SEQ2FUN

FURNA
Download all results in tab-seperated text for 3166 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1101 4v8z:B2
    (6.6Å)
    		 1781 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE56 RF01960
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 24200810
    101

    441

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    OHX:AI:301 118,293
    OHX:B2:1901 1642,1756~1758
    OHX:B2:1902 984~986,1014
    OHX:B2:1903 1414,1418
    OHX:B2:1904 549~550,583~584
    OHX:B2:1905 104,353,355
    OHX:B2:1906 1085,1298
    OHX:B2:1907 1212~1213,1449
    OHX:B2:1908 1046~1047
    OHX:B2:1909 1497~1498,1508
    OHX:B2:1910 867~868
    OHX:B2:1912 129,264
    OHX:B2:1913 992,1006
    OHX:B2:1914 103,355~356
    OHX:B2:1915 833,837
    OHX:B2:1916 120,452~453
    OHX:B2:1917 565,577
    OHX:B2:1918 42,438
    OHX:B2:1919 1661~1662,1738
    OHX:B2:1920 405,423
    OHX:B2:1922 1672,1727
    OHX:B2:1923 980,1015
    OHX:B2:1924 57~58
    OHX:B2:1925 1237~1239
    OHX:B2:1926 120,122
    OHX:B2:1927 976,1023
    OHX:B2:1930 523,527
    OHX:B2:1931 800,802
    OHX:B2:1932 1667~1668
    OHX:B2:1933 32~33
    OHX:B2:1936 1486,1520,1522
    OHX:B2:1937 357~358
    OHX:B2:1938 760~761
    OHX:B2:1941 301,384
    OHX:B2:1942 1155,1314
    OHX:B2:1943 8,1139~1140
    OHX:B2:1944 62,82~83
    OHX:B2:1945 205,261
    OHX:B2:1947 1110~1111
    OHX:B2:1948 515,530
    OHX:B2:1949 1413,1417
    OHX:B2:1950 51~52
    OHX:B2:1951 131,176
    OHX:B2:1952 1114,1129~1130
    OHX:B2:1953 1495,1596,1598
    OHX:B2:1954 470~471
    OHX:B2:1955 1294~1295
    OHX:B2:1957 108~110
    OHX:B2:1958 877~878
    OHX:B2:1959 1718,1720
    OHX:B2:1961 25,27,40
    OHX:B2:1962 1317~1318
    OHX:B2:1963 1283~1284
    OHX:B2:1964 1653~1654,1745
    OHX:B2:1965 938,940
    OHX:B2:1966 101,358
    OHX:B2:1968 990~991,1011
    OHX:B2:1969 321~322
    OHX:B2:1970 1764~1766,1770,1794
    OHX:B2:1971 245,248
    OHX:B2:1972 894,915
    OHX:B2:1973 1353,1368~1369
    OHX:B2:1974 698,738~740
    OHX:B2:1976 1725~1726
    OHX:B2:1977 1485~1486
    OHX:B2:1978 205~206
    OHX:B2:1982 1747~1748
    OHX:B2:1983 364~365
    OHX:B2:1984 329,336
    OHX:B2:1985 422~423
    OHX:B2:1987 1366~1367
    OHX:B2:1988 1679~1680
    OHX:B2:1990 1201~1202,1599
    OHX:B2:1992 1150,1637
    OHX:B2:1994 1159,1193,1282~1283,1285
    OHX:B2:1995 213~214
    OHX:B2:1996 1167~1168,1588
    OHX:B2:1997 1181~1182
    OHX:B2:1998 21~22,598
    OHX:B2:1999 1370,1518
    OHX:B2:2000 880,1018
    OHX:B2:2002 1669~1670
    OHX:B2:2005 318,346
    OHX:B2:2007 348~349
    OHX:B2:2009 701~702,732
    OHX:B2:2010 383~384
    OHX:B2:2011 991,1010~1011
    OHX:B2:2012 1157~1158,1616
    OHX:B2:2016 982~983
    OHX:B2:2018 1665,1734~1735
    OHX:B2:2019 764,769~770
    OHX:B2:2020 1589~1590
    OHX:B2:2022 833,835
    OHX:B2:2023 562,579~580
    OHX:B2:2024 1351~1353
    OHX:B2:2025 1282~1283
    OHX:B2:2026 461~462
    OHX:B2:2028 1005~1006,1769
    OHX:B2:2029 1500,1507
    OHX:B2:2031 1117~1119
    OHX:B2:2033 1152~1153
    OHX:B2:2035 1175,1561
    OHX:B2:2036 1041~1042
    OHX:B2:2037 73,76~77,80
    OHX:B2:2038 687~688
    OHX:B2:2039 313~314
    OHX:B2:2040 1233,1245~1247
    OHX:B2:2042 1035,1095
    OHX:B2:2044 1537,1570~1572
    OHX:B2:2047 434,437
    OHX:B2:2048 1303,1305
    OHX:B2:2051 622~624
    OHX:B2:2057 367,759
    OHX:B2:2059 1051,1053
    OHX:B2:2060 1142,1631
    OHX:B2:2061 1469,1589
    OHX:B2:2062 430~431,438
    OHX:B2:2064 1336~1337,1381,1485
    OHX:B2:2067 1590~1591
    OHX:B2:2068 1634,1639
    OHX:B2:2069 222~223,837~840
    OHX:B2:2071 1618~1620
    OHX:B2:2072 885,925
    OHX:B2:2075 1055~1056,1062~1064
    OHX:B2:2078 1310~1311,1314
    OHX:B2:2079 792~793
    OHX:B2:2081 1214~1215,1446,1448
    OHX:B5:3402 1004,1780
    1102 4v8z:B5
    (6.6Å)
    		 3147 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02540
    RF02543    		 Saccharomyces
    cerevisiae
    4932    		 24200810
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    OHX:B5:3402 2263~2264
    1103 4v8z:B7
    (6.6Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 24200810 Assembly1
    OHX:B7:201 75,77
    OHX:B7:202 14,58~59
    OHX:B7:206 109~110
    OHX:B7:219 79,81
    1104 4v97:AA
    (3.516Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E306 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23630274 Assembly1
    PAR:AA:7111 1405,1408,1490~1495
    1105 4v97:CA
    (3.516Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E306 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23630274 Assembly2
    PAR:CA:1741 1405,1407~1408,1490~1494
    1106 4v9a:AA
    (3.2999Å)
    		 1506 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEDF RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23431179 Assembly1
    TAC:AA:1833 1054,1195~1198
    1107 4v9a:CA
    (3.2999Å)
    		 1506 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEDF RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23431179 Assembly2
    TAC:CA:1805 1054,1195,1197~1198
    1108 4v9b:AA
    (3.1Å)
    		 1506 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEDF RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23431179 Assembly1
    T1C:AA:1837 1054,1195~1198
    1109 4v9b:CA
    (3.1Å)
    		 1506 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEDF RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23431179 Assembly2
    T1C:CA:1800 966,1054,1195,1197~1198
    1110 4v9c:AA
    (3.3Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 22902368 Assembly1
    NMY:AA:1655 1405,1407~1408,1490~1495
    NMY:AA:1656 1417,1419~1420,1477
    NMY:AA:1657 902,1513~1515
    1111 4v9c:BA
    (3.3Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 22902368 Assembly1
    NMY:BA:3161 1906,1921~1923
    NMY:BA:3162 990~992,1157~1158,1162~1164,11
    84~1185
    NMY:BA:3163 1202,1204~1206,1239~1240
    NMY:BA:3164 482,492,494,507~508
    NMY:BA:3165 2674,2727~2728,2730~2731
    NMY:BA:3166 536~540,550~551,553
    NMY:BA:3167 1858~1859,1861,1880,1882~1883
    1112 4v9c:CA
    (3.3Å)
    		 1538 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 22902368 Assembly2
    NMY:CA:1672 1406~1408,1489~1491,1493~1494
    1113 4v9c:DA
    (3.3Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 22902368 Assembly2
    NMY:DA:3184 1921~1923,1929~1931
    NMY:DA:3185 2673~2674,2727~2731
    NMY:DA:3186 536~540
    NMY:DA:3187 1858~1859,1879~1880,1882
    NMY:DA:3188 991~992,1157~1159,1162~1163,11
    84
    NMY:DA:3189 482,488,492~494,507
    NMY:DA:3190 1204~1205,1238~1240
    1114 4v9f:0
    (2.404Å)
    		 2808 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E02E RF02540
    RF00002    		 Haloarcula
    marismortui
    ATCC
    43049
    272569    		 23695244
    10937989    		 Assembly1
    CL:0:8185 1300,1329
    CL:0:8190 1072,1087,1291
    ACY:0:8212 2756,2895~2897
    ACY:0:8213 966~967,1002
    1115 4v9q:AA
    (3.4Å)
    		 2832 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DD88 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB27
    262724    		 23824292 Assembly1
    BLS:AA:4001 2063~2064,2251~2252,2439,2600~
    2601
    1116 4v9q:BV
    (3.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Alcaligenes
    sp.
    512    		 23824292 Assembly1
    BLS:AA:4001 74~76
    1117 4v9q:CA
    (3.4Å)
    		 2832 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DD88 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB27
    262724    		 23824292 Assembly2
    BLS:CA:4405 2063~2064,2251~2252,2439,2600~
    2601
    1118 4v9q:DV
    (3.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Alcaligenes
    sp.
    512    		 23824292 Assembly2
    BLS:CA:4405 74~76
    1119 4v9r:BA
    (3.0Å)
    		 2731 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    274    		 24412368 Assembly1
    FME:AX:101 2085,2463,2597
    1120 4v9r:DA
    (3.0Å)
    		 2714 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    274    		 24412368 Assembly2
    FME:CX:101 2451,2585
    1121 4v9s:BA
    (3.1Å)
    		 2731 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 24412368 Assembly1
    FME:AX:101 2085,2463,2597
    1122 4v9s:DA
    (3.1Å)
    		 2714 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 24412368 Assembly2
    FME:CX:101 2063,2451,2585
    1123 4w29:AA
    (3.8Å)
    		 1511 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCE RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB27
    262724    		 25190797 Assembly1
    NMY:AA:1601 1405~1406,1408,1491~1494
    1124 4w29:BA
    (3.8Å)
    		 2879 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEC7 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB27
    262724    		 25190797 Assembly1
    NMY:BA:2902 1831~1832,1933,1974
    NMY:BA:2903 1963~1966
    NMY:BA:2904 1905,1930,1966~1972,2593
    1125 4w29:CA
    (3.8Å)
    		 1511 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCE RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB27
    262724    		 25190797 Assembly2
    NMY:CA:1601 1405~1406,1408,1491~1494
    1126 4w29:DA
    (3.8Å)
    		 2879 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEC7 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB27
    262724    		 25190797 Assembly2
    NMY:DA:2901 1831~1832,1933~1934,1974
    1127 4w2e:A
    (2.9Å)
    		 2873 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    274    		 25104389 Assembly1
    PHE:w:107 2451~2452,2585
    1128 4w2f:AA
    (2.4Å)
    		 1497 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25306919 Assembly1
    UAM:AA:3232 693,788,794~796,1506
    1129 4w2f:AV
    (2.4Å)
    		 13 N/A N/A N/A synthetic
    construct
    32630    		 25306919 Assembly1
    UAM:AA:3232 14~15
    1130 4w2f:CA
    (2.4Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25306919 Assembly2
    UAM:CA:3202 693,788,792,794~796,1506
    1131 4w2g:AA
    (2.55Å)
    		 1498 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25306919 Assembly1
    PCY:AA:3231 693,787~788,795~796
    1132 4w2g:AY
    (2.55Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 25306919 Assembly1
    PCY:AA:3231 34~35
    1133 4w2g:CA
    (2.55Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25306919 Assembly2
    PCY:CA:3178 693,787~788,795~796
    1134 4w2h:AA
    (2.7Å)
    		 1497 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25306919 Assembly1
    PCY:AA:3191 693,788~789,795~796
    1135 4w2h:CA
    (2.7Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25306919 Assembly2
    PCY:CA:3176 693~694,787~788,795~796
    1136 4w2i:AA
    (2.7Å)
    		 1496 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25306922 Assembly1
    NEG:AA:3216 965~966,1054,1197~1198
    NEG:AA:3217 569,873
    NEG:AA:3218 941~942,1336
    NEG:AA:3219 669~672,807
    1137 4w2i:BA
    (2.7Å)
    		 2822 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25306922 Assembly1
    NEG:AA:3220 1966~1969,1976~1977
    NEG:AA:3221 785~786,801~802,804
    NEG:AA:3222 553~554,558~559,580~581
    NEG:AW:3004 1963~1966,2616
    NEG:AX:3013 2333~2336,2342~2344
    1138 4w2i:CA
    (2.7Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25306922 Assembly2
    NEG:CA:3170 965,1054,1197~1198
    NEG:CA:3171 569~570,873
    NEG:CA:3172 942,1336
    NEG:CA:3173 669~672
    1139 4w2i:DA
    (2.7Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25306922 Assembly2
    NEG:CA:3174 1945~1946,1949~1950,1954~1955
    NEG:CA:3175 739,754~755,757
    NEG:CA:3176 528~529,533,557~559
    NEG:CA:3177 13~16,524~525
    NEG:CW:3002 1941~1942,1944,2604
    NEG:CX:3004 2321~2324,2329~2332
    1140 4w90:C
    (3.118Å)
    		 101 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000080DDC9 RF00379 Bacillus
    subtilis
    1423    		 25271255 Assembly1
    2BA:C:201 9,25~28,60~62,95~96,100,109~11
    0
    2BA:C:202 5~7,64,80~82,89~90,114~116
    1141 4w92:C
    (3.209Å)
    		 96 GO:0180001 (F) cyclic-di-AMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000080DDC9 RF00379 Bacillus
    subtilis
    1423    		 25271255 Assembly1
    EDO:C:207 23~24,110
    2BA:C:208 5~7,64,80~82,89~90,114~116
    2BA:C:209 9,25~28,60~63,95~96,100,109~11
    0
    1142 4wce:X
    (3.526Å)
    		 2708 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001450D9 RF02540
    RF02541    		 Staphylococcus
    aureus
    subsp.
    aureus
    NCTC
    8325
    93061    		 26464510 Assembly1
    MPD:X:3001 1604~1605
    MPD:X:3002 2549~2550
    MPD:X:3003 2088~2089,2470~2471
    MPD:X:3004 204,207
    MPD:X:3005 1340~1341,1650~1651
    MPD:X:3006 691~692
    MPD:X:3007 627~628,1289
    MPD:X:3008 197~198,712~713
    MPD:X:3011 622,1298
    EPE:X:3311 2065~2066,2068
    SPD:X:3313 1019~1020
    SPD:X:3315 2571,2669~2672
    1143 4wf1:CA
    (3.09Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    str.
    K-12
    substr.
    MG1655
    511145    		 25368144 Assembly2
    NEG:CA:1657 965,1054,1196~1198
    1144 4wf9:X
    (3.427Å)
    		 2712 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001450D9 RF02540
    RF02541    		 Staphylococcus
    aureus
    subsp.
    aureus
    NCTC
    8325
    93061    		 26464510 Assembly1
    TEL:X:3001 791,2085~2086,2532,2638
    MPD:X:3002 1560~1561,1604~1605
    MPD:X:3003 2708,2711~2713,2747
    MPD:X:3004 1316~1317
    MPD:X:3005 2059,2082,2480,2526
    MPD:X:3006 508~509
    MPD:X:3007 843~845
    MPD:X:3008 513~514
    MPD:X:3009 572,2807
    SPD:X:3362 2478~2479
    SPD:X:3363 2571,2669~2670,2672
    SPD:X:3364 1975~1978
    SPD:X:3365 373,522~523,1248,1275
    EOH:X:3368 1384~1385
    1145 4wfa:X
    (3.392Å)
    		 2711 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001450D9 RF02540
    RF02541    		 Staphylococcus
    aureus
    subsp.
    aureus
    NCTC
    8325
    93061    		 26464510 Assembly1
    ZLD:X:3001 2088,2474,2478~2479,2528,2531~
    2533,2612
    MPD:X:3003 1316~1317
    MPD:X:3005 1560~1561,1605
    MPD:X:3006 2740,2744~2746
    MPD:X:3007 350,1249~1250
    MPD:X:3009 635~637,707
    EPE:X:3423 789~791,2637~2639
    EPE:X:3424 1698~1700
    EPE:X:3425 2289~2290,2292~2293,2300
    EPE:X:3426 626~628,1289
    SPD:X:3427 1015,1018~1020,1022,1032~1033
    SPD:X:3428 2669~2670,2672
    SPD:X:3430 513~514
    SPD:X:3432 622,1297~1299
    SPD:X:3433 638~640,705
    SPD:X:3434 1247,1249
    EOH:X:3437 691,693
    1146 4wfb:X
    (3.43Å)
    		 2707 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001450D9 RF02540
    RF02541    		 Staphylococcus
    aureus
    subsp.
    aureus
    NCTC
    8325
    93061    		 26464510 Assembly1
    3LK:X:3001 2088,2090,2478~2479,2531~2533,
    2612
    MPD:X:3003 15~16
    MPD:X:3004 884,981
    MPD:X:3005 884,982~984
    MPD:X:3006 642,702
    MPD:X:3007 1315~1317
    MPD:X:3009 695~696
    MPD:X:3012 1734,2005
    MPD:X:3016 626~628,1289
    EPE:X:3421 790~791,2638~2639
    EPE:X:3422 1822~1823,1849
    EPE:X:3423 2651,2654,2804
    EPE:X:3424 1073~1075
    SPD:X:3425 508,1655
    SPD:X:3426 3,2657~2659,2913
    SPD:X:3427 2669~2672
    SPD:X:3428 1021~1022,1025
    SPD:X:3429 638~639
    SPD:X:3430 637,707
    SPD:X:3431 2431~2432
    SPD:X:3432 1340,1650~1652
    SPD:X:3434 198~200,849~850
    1147 4wfl:A
    (2.49Å)
    		 107 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080DF51 RF01854 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 25270875 Assembly1
    NCO:A:202 67~68
    NCO:A:205 18,28
    NCO:A:206 57~58
    NCO:A:208 81~82
    NCO:A:209 106~108
    NCO:A:212 3,103
    NCO:A:213 73~74
    NCO:A:214 35,94
    NCO:A:217 21,23
    NCO:A:218 11,62
    1148 4wfm:A
    (3.1Å)
    		 103 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080E098 RF01854 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 25270875 Assembly1
    NCO:A:202 57~58
    NCO:A:203 18,28~29
    NCO:A:204 11,62
    NCO:A:206 73~74,88
    NCO:A:207 79~80
    NCO:A:209 3,103
    NCO:A:212 53~54
    1149 4wfm:B
    (3.1Å)
    		 103 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080E098 RF01854 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 25270875 Assembly2
    NCO:B:201 57~58
    NCO:B:202 11,62
    NCO:B:203 7,64
    NCO:B:205 17~18,28~29
    NCO:B:206 73~74,88
    NCO:B:207 3,103~104
    NCO:B:210 16,68
    1150 4wfn:X
    (3.54Å)
    		 2680 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02540
    RF02541    		 Deinococcus
    radiodurans
    R1
    =
    ATCC
    13939
    =
    DSM
    20539
    243230    		 28689968 Assembly1
    ERY:X:2902 759,2041,2484,2589~2590
    1151 4woi:AA
    (3.0Å)
    		 1538 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 26224058 Assembly1
    PAR:AA:1672 1405,1407~1408,1490~1491,1493~
    1494
    1152 4woi:BA
    (3.0Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 26224058 Assembly1
    PAR:BA:3001 1906,1921~1922,1929~1930
    PAR:BA:3002 2673~2674,2727~2731
    PAR:BA:3003 536~538,550~551
    PAR:BA:3004 482~483,492,494~495,507
    PAR:BA:3005 1858~1862,1880~1882
    1153 4woi:CA
    (3.0Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 26224058 Assembly2
    PAR:CA:3166 2673~2675,2727~2728,2730~2731
    PAR:CA:3167 1906,1921~1923,1929~1930
    PAR:CA:3168 1858~1861,1878,1880~1881
    PAR:CA:3169 536~539,550~551,555
    PAR:CA:3170 482,492~495,507~508
    1154 4woi:DA
    (3.0Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 26224058 Assembly2
    PAR:DA:1654 1405,1407~1408,1490~1494
    PAR:DA:1655 1419~1421,1480
    1155 4wra:13
    (3.05Å)
    		 1505 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26037619 Assembly1
    PAR:13:1745 1405,1408,1490~1491,1493~1495
    1156 4wra:1G
    (3.05Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26037619 Assembly2
    PAR:1G:1686 1405~1406,1408,1490~1491,1493~
    1495
    1157 4wsd:13
    (2.95Å)
    		 1498 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000868551 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26037619 Assembly1
    PAR:13:1749 1405~1406,1408,1490~1491,1493~
    1495
    1158 4wsd:1G
    (2.95Å)
    		 1498 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000868551 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26037619 Assembly2
    PAR:1G:1697 1405~1406,1408,1491~1495
    1159 4wt8:Ab
    (3.4Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E260 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25562208 Assembly1
    PAR:Ab:1601 1388~1389,1391,1469,1471~1472
    1160 4wt8:Bb
    (3.4Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E260 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25562208 Assembly2
    PAR:Bb:1601 1391,1468~1469,1471~1473
    1161 4wt8:C1
    (3.4Å)
    		 2807 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E136 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25562208 Assembly1
    3V6:C1:3001 2085,2449~2450,2611~2613
    1162 4wt8:C4
    (3.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    HB8
    300852    		 25562208 Assembly1
    3V6:C1:3001 76~77
    1163 4wt8:D1
    (3.4Å)
    		 2807 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E136 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25562208 Assembly2
    3V6:D1:3001 2084~2085,2450,2611~2613
    1164 4www:RA
    (3.1Å)
    		 2854 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    str.
    K-12
    substr.
    MG1655
    511145    		 20855725 Assembly1
    EM1:RA:3135 748,750,752,2058~2059,2062,250
    3,2505,2609,2611
    1165 4x4n:B
    (2.953Å)
    		 32 N/A URS000080E2D0 N/A Homo
    sapiens
    9606    		 25640237
    1124    		 Assembly1
    GMP:B:101 15~16
    5GP:B:102 14,16~17,19
    1166 4x4s:B
    (3.25Å)
    		 35 N/A URS000080DD43 N/A Homo
    sapiens
    9606    		 25640237
    M044_0.6

    1124    		 Assembly1
    CTP:A:501 36~37
    1167 4x4v:B
    (2.6Å)
    		 33 N/A URS000080E308 N/A Homo
    sapiens
    9606    		 25640237
    1335

    1124

    s49

    1333    		 Assembly1
    TAR:B:501 11,21~22
    5GP:B:502 14,16~17,19
    5GP:B:503 15~16
    1168 4x4v:D
    (2.6Å)
    		 26 N/A URS000080E308 N/A Homo
    sapiens
    9606    		 25640237 Assembly2
    5GP:D:101 16~17
    1169 4x62:A
    (3.4492Å)
    		 1512 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE21 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26751643 Assembly1
    PAR:A:1601 1407~1408,1491~1495
    PAR:A:1602 569,821
    PAR:A:1603 31,47~48,51~52,114,355~356,359
    ~360
    PAR:A:1604 662,664,666,741~743
    PAR:A:1605 610~611,622~626
    PAR:A:1606 670~672,716
    1170 4x64:A
    (3.35Å)
    		 1512 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE21 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26751643 Assembly1
    PAR:A:1601 1405,1407~1408,1491~1495
    PAR:A:1602 568~569,575,821,875
    PAR:A:1603 47~48,51~52,114,355~356,359~36
    0
    PAR:A:1604 662,664,666,741~743
    PAR:A:1605 610~611,622~626
    PAR:A:1606 669~671,715~716
    1171 4x65:A
    (3.345Å)
    		 1512 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE21 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26751643 Assembly1
    PAR:A:1601 1405,1407~1408,1491~1495
    PAR:A:1602 569,575,821
    PAR:A:1603 47~48,51~52,114,355~356,359~36
    0
    PAR:A:1604 662,664,740~743
    PAR:A:1605 610~611,622~626
    PAR:A:1606 670~671,716
    1172 4x66:A
    (3.446Å)
    		 1512 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE21 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26751643 Assembly1
    PAR:A:1601 1405,1407~1408,1491,1493~1495
    PAR:A:1602 569,575,821
    PAR:A:1603 47~48,51~52,114,355~356,359~36
    0
    PAR:A:1604 662,664,740~743
    PAR:A:1605 610~611,622~626
    PAR:A:1606 670,672,715~716
    1173 4xnr:X
    (2.21Å)
    		 71 GO:0009113 (P) purine nucleobase biosy... URS000080E2A9 RF00167 Vibrio
    vulnificus
    672    		 25938715 Assembly1
    ADE:X:101 21~22,47,51~52,74~75
    1174 4xw0:A
    (1.81Å)
    		 10 N/A URS00008FED46 N/A Homo
    sapiens
    9606    		 26543073 Assembly1
    SO4:A:101 6~7
    1175 4xw7:A
    (2.5Å)
    		 64 GO:0006730 (P) one-carbon metabolic pr...
    GO:1900371 (P) regulation of purine nu...    		 URS0000868555 RF01750 Schaalia
    odontolytica
    1660    		 26144884 Assembly1
    AMZ:A:101 11~12,29
    IRI:A:115 7~8
    1176 4xwf:A
    (1.8Å)
    		 64 GO:0006730 (P) one-carbon metabolic pr...
    GO:1900371 (P) regulation of purine nu...    		 URS0000868555 RF01750 Schaalia
    odontolytica
    1660    		 26144884 Assembly1
    AMZ:A:101 11~12,29
    IRI:A:105 7~8
    IRI:A:106 60~61
    IRI:A:107 58~59
    IRI:A:108 10,30
    1177 4y1i:A
    (2.85Å)
    		 100 N/A URS00008116C1 N/A Lactococcus
    lactis
    subsp.
    lactis
    1360    		 25794619 Assembly1
    GTP:A:201 3,101
    1178 4y1i:B
    (2.85Å)
    		 100 N/A URS00008116C1 N/A Lactococcus
    lactis
    subsp.
    lactis
    1360    		 25794619 Assembly1
    GTP:A:226 3,101
    1179 4y1j:A
    (2.24Å)
    		 100 N/A URS00008116BC N/A Lactococcus
    lactis
    subsp.
    lactis
    1360    		 25794619 Assembly1
    GTP:A:201 3,101
    1180 4y1j:B
    (2.24Å)
    		 100 N/A URS00008116BC N/A Lactococcus
    lactis
    subsp.
    lactis
    1360    		 25794619 Assembly1
    GTP:B:202 3,101
    1181 4y1m:A
    (3.0Å)
    		 76 N/A URS00008116AD N/A Escherichia
    coli
    562    		 25794619 Assembly2
    GTP:A:208 2,108
    1182 4y1m:B
    (3.0Å)
    		 107 GO:0030145 (F) manganese ion binding URS00008116AD RF00080 Escherichia
    coli
    562    		 25794619 Assembly1
    GTP:B:212 2,108
    1183 4y1n:A
    (3.0Å)
    		 249 GO:0000373 (P) Group II intron splicing URS0000868528 RF02001 Oceanobacillus
    iheyensis
    HTE831
    221109    		 26502156 Assembly1
    IRI:A:401 8~10,259
    IRI:A:402 70,113~114
    IRI:A:403 25,27~29
    IRI:A:404 12,14~16,255~256
    IRI:A:406 36~37
    IRI:A:407 39,243~244
    IRI:A:408 242~244
    IRI:A:409 40~41
    IRI:A:410 119,173
    IRI:A:411 264~266
    IRI:A:412 31~32
    IRI:A:413 164,211~213
    1184 4y1n:B
    (3.0Å)
    		 259 GO:0000373 (P) Group II intron splicing URS0000868528 RF02001 Oceanobacillus
    iheyensis
    HTE831
    221109    		 26502156 Assembly2
    IRI:B:401 32,34
    IRI:B:402 12,14~15,255
    IRI:B:403 8~10,259
    IRI:B:404 38~39,243~244
    IRI:B:405 242~244
    IRI:B:407 80,100~101
    IRI:B:408 212~213
    IRI:B:409 159~160
    IRI:B:410 264~266
    IRI:B:411 31~32
    IRI:B:412 52~53,169~170
    IRI:B:413 64,120
    IRI:B:414 119,239~240
    IRI:B:415 142,144~146
    1185 4y4o:1A
    (2.3Å)
    		 2872 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25775268 Assembly1
    MPD:1A:4028 449~451
    1186 4y4o:1B
    (2.3Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 25775268 Assembly1
    ARG:1B:230 80~82,93~94
    1187 4y4o:1a
    (2.3Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25775268 Assembly1
    MPD:1a:1880 345~347
    1188 4y4o:2A
    (2.3Å)
    		 2867 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25775268 Assembly2
    MPD:2A:3747 1772,1976,1978
    MPD:2A:3748 2397,2413~2414
    MPD:2B:3020 915~916
    1189 4yaz:A
    (2.0Å)
    		 84 GO:0035438 (F) cyclic-di-GMP binding URS00008116B1 RF01051 Geobacter
    28231    		 25818298 Assembly2
    4BW:A:103 8,11~12,14,40~41,75~76
    1190 4yaz:R
    (2.0Å)
    		 84 GO:0035438 (F) cyclic-di-GMP binding URS00008116B1 RF01051 Geobacter
    28231    		 25818298 Assembly1
    4BW:R:106 8,11~12,14,40~41,75~76
    1191 4yb0:A
    (2.121Å)
    		 83 GO:0035438 (F) cyclic-di-GMP binding URS00008116A8 RF01051 Geobacter
    28231    		 25818298 Assembly2
    GDP:A:101 2,84
    C2E:A:102 8,11~12,14,40~41,75~76
    1192 4yb0:R
    (2.121Å)
    		 83 GO:0035438 (F) cyclic-di-GMP binding URS00008116A8 RF01051 Geobacter
    28231    		 25818298 Assembly1
    GDP:R:101 2,84
    C2E:R:102 8,11~12,14,40~41,75~76
    1193 4yb1:R
    (2.081Å)
    		 91 GO:0035438 (F) cyclic-di-GMP binding URS00008116BA RF03167
    RF01051    		 Vibrio
    cholerae
    666    		 25818298 Assembly1
    4BW:R:102 14,16~17,20~21,46~47,93~94
    1194 4ybb:AA
    (2.1Å)
    		 1534 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 25775265 Assembly1
    PG4:AA:1670 774~775,806
    MPD:AA:1671 1457~1458
    MPD:AA:1676 293,307~308
    PUT:AA:1673 453,479~480
    1195 4ybb:BA
    (2.1Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 25775265 Assembly2
    PG4:BA:1642 774,806
    1196 4ybb:DA
    (2.1Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 25775265 Assembly1
    SPD:DA:3183 855~857
    SPD:DA:3187 860~861,910~911,913,2265
    SPD:DA:3207 1769~1770,1959,1975
    SPD:DA:3225 677,792~793,2440~2442
    1PE:DA:3185 22~23,519
    1PE:DA:3203 948~949,961
    PGE:DA:3186 998~999,1158
    PGE:DA:3215 1424,1575
    PGE:DA:3226 1693,1831,1975~1976
    PUT:DA:3189 504~505,1235~1236
    PUT:DA:3195 2628~2629,2781
    PUT:DA:3206 1904,1968,2593
    PUT:DA:3213 1698,1979
    PUT:DA:3214 1132~1133,1136~1137
    PUT:DA:3220 698,1554~1555
    PUT:DA:3223 787~790,794
    PUT:DA:3224 825,2259,2428
    MPD:DA:3190 602,655
    MPD:DA:3192 1202,1244
    MPD:DA:3205 61~63,92~93
    MPD:DA:3208 2751~2752
    MPD:DA:3211 2451~2452,2506
    ACY:DA:3191 59~60,74
    PG4:DA:3193 2256~2258,2275
    PG4:DA:3217 1349,1383,1406
    EDO:DA:3194 1782,2609
    EDO:DA:3197 189,205
    EDO:DA:3198 2821,2826~2827
    EDO:DR:203 998~999
    PEG:DA:3200 2008~2009
    PEG:DA:3201 978~979,986,1002
    PEG:DA:3227 747,2015
    PEG:DA:3228 2058~2059
    GUN:DA:3212 2814,2831
    1197 4ybb:DB
    (2.1Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    K-12
    83333    		 25775265 Assembly1
    EDO:DB:212 84~85,93
    1198 4yco:D
    (2.1Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E264 RF00005 Escherichia
    coli
    K-12
    83333    		 25902496 Assembly1
    FMN:A:401 16~17
    1199 4yco:E
    (2.1Å)
    		 67 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E264 RF00005 Escherichia
    coli
    K-12
    83333    		 25902496 Assembly2
    FMN:B:402 16~17
    1200 4yco:F
    (2.1Å)
    		 71 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E264 RF00005 Escherichia
    coli
    K-12
    83333    		 25902496 Assembly3
    FMN:C:401 16~17
    << < 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.