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Download all results in tab-seperated text for 3166 RNAs.

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#	PDB (Resolution)	Length	EC number & GO term	RNAcentral	Rfam	Taxon	PubMed	ATtRACT motif	Ligand & binding nucleotides
1101	4v8z:B2 (6.6Å)	1781	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DE56	RF01960 RF01959 RF00177	Saccharomyces cerevisiae 4932	24200810	101 441 M080_0.6 386 M107_0.6 497 490	Assembly1 OHX:AI:301 118,293 OHX:B2:1901 1642,1756~1758 OHX:B2:1902 984~986,1014 OHX:B2:1903 1414,1418 OHX:B2:1904 549~550,583~584 OHX:B2:1905 104,353,355 OHX:B2:1906 1085,1298 OHX:B2:1907 1212~1213,1449 OHX:B2:1908 1046~1047 OHX:B2:1909 1497~1498,1508 OHX:B2:1910 867~868 OHX:B2:1912 129,264 OHX:B2:1913 992,1006 OHX:B2:1914 103,355~356 OHX:B2:1915 833,837 OHX:B2:1916 120,452~453 OHX:B2:1917 565,577 OHX:B2:1918 42,438 OHX:B2:1919 1661~1662,1738 OHX:B2:1920 405,423 OHX:B2:1922 1672,1727 OHX:B2:1923 980,1015 OHX:B2:1924 57~58 OHX:B2:1925 1237~1239 OHX:B2:1926 120,122 OHX:B2:1927 976,1023 OHX:B2:1930 523,527 OHX:B2:1931 800,802 OHX:B2:1932 1667~1668 OHX:B2:1933 32~33 OHX:B2:1936 1486,1520,1522 OHX:B2:1937 357~358 OHX:B2:1938 760~761 OHX:B2:1941 301,384 OHX:B2:1942 1155,1314 OHX:B2:1943 8,1139~1140 OHX:B2:1944 62,82~83 OHX:B2:1945 205,261 OHX:B2:1947 1110~1111 OHX:B2:1948 515,530 OHX:B2:1949 1413,1417 OHX:B2:1950 51~52 OHX:B2:1951 131,176 OHX:B2:1952 1114,1129~1130 OHX:B2:1953 1495,1596,1598 OHX:B2:1954 470~471 OHX:B2:1955 1294~1295 OHX:B2:1957 108~110 OHX:B2:1958 877~878 OHX:B2:1959 1718,1720 OHX:B2:1961 25,27,40 OHX:B2:1962 1317~1318 OHX:B2:1963 1283~1284 OHX:B2:1964 1653~1654,1745 OHX:B2:1965 938,940 OHX:B2:1966 101,358 OHX:B2:1968 990~991,1011 OHX:B2:1969 321~322 OHX:B2:1970 1764~1766,1770,1794 OHX:B2:1971 245,248 OHX:B2:1972 894,915 OHX:B2:1973 1353,1368~1369 OHX:B2:1974 698,738~740 OHX:B2:1976 1725~1726 OHX:B2:1977 1485~1486 OHX:B2:1978 205~206 OHX:B2:1982 1747~1748 OHX:B2:1983 364~365 OHX:B2:1984 329,336 OHX:B2:1985 422~423 OHX:B2:1987 1366~1367 OHX:B2:1988 1679~1680 OHX:B2:1990 1201~1202,1599 OHX:B2:1992 1150,1637 OHX:B2:1994 1159,1193,1282~1283,1285 OHX:B2:1995 213~214 OHX:B2:1996 1167~1168,1588 OHX:B2:1997 1181~1182 OHX:B2:1998 21~22,598 OHX:B2:1999 1370,1518 OHX:B2:2000 880,1018 OHX:B2:2002 1669~1670 OHX:B2:2005 318,346 OHX:B2:2007 348~349 OHX:B2:2009 701~702,732 OHX:B2:2010 383~384 OHX:B2:2011 991,1010~1011 OHX:B2:2012 1157~1158,1616 OHX:B2:2016 982~983 OHX:B2:2018 1665,1734~1735 OHX:B2:2019 764,769~770 OHX:B2:2020 1589~1590 OHX:B2:2022 833,835 OHX:B2:2023 562,579~580 OHX:B2:2024 1351~1353 OHX:B2:2025 1282~1283 OHX:B2:2026 461~462 OHX:B2:2028 1005~1006,1769 OHX:B2:2029 1500,1507 OHX:B2:2031 1117~1119 OHX:B2:2033 1152~1153 OHX:B2:2035 1175,1561 OHX:B2:2036 1041~1042 OHX:B2:2037 73,76~77,80 OHX:B2:2038 687~688 OHX:B2:2039 313~314 OHX:B2:2040 1233,1245~1247 OHX:B2:2042 1035,1095 OHX:B2:2044 1537,1570~1572 OHX:B2:2047 434,437 OHX:B2:2048 1303,1305 OHX:B2:2051 622~624 OHX:B2:2057 367,759 OHX:B2:2059 1051,1053 OHX:B2:2060 1142,1631 OHX:B2:2061 1469,1589 OHX:B2:2062 430~431,438 OHX:B2:2064 1336~1337,1381,1485 OHX:B2:2067 1590~1591 OHX:B2:2068 1634,1639 OHX:B2:2069 222~223,837~840 OHX:B2:2071 1618~1620 OHX:B2:2072 885,925 OHX:B2:2075 1055~1056,1062~1064 OHX:B2:2078 1310~1311,1314 OHX:B2:2079 792~793 OHX:B2:2081 1214~1215,1446,1448 OHX:B5:3402 1004,1780
1102	4v8z:B5 (6.6Å)	3147	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000061F377	RF02540 RF02543	Saccharomyces cerevisiae 4932	24200810	M107_0.6 M080_0.6 M299_0.6 16	Assembly1 OHX:B5:3402 2263~2264
1103	4v8z:B7 (6.6Å)	121	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000055688D	RF00001	Saccharomyces cerevisiae 4932	24200810		Assembly1 OHX:B7:201 75,77 OHX:B7:202 14,58~59 OHX:B7:206 109~110 OHX:B7:219 79,81
1104	4v97:AA (3.516Å)	1504	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E306	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	23630274		Assembly1 PAR:AA:7111 1405,1408,1490~1495
1105	4v97:CA (3.516Å)	1504	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E306	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	23630274		Assembly2 PAR:CA:1741 1405,1407~1408,1490~1494
1106	4v9a:AA (3.2999Å)	1506	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DEDF	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	23431179		Assembly1 TAC:AA:1833 1054,1195~1198
1107	4v9a:CA (3.2999Å)	1506	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DEDF	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	23431179		Assembly2 TAC:CA:1805 1054,1195,1197~1198
1108	4v9b:AA (3.1Å)	1506	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DEDF	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	23431179		Assembly1 T1C:AA:1837 1054,1195~1198
1109	4v9b:CA (3.1Å)	1506	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DEDF	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	23431179		Assembly2 T1C:CA:1800 966,1054,1195,1197~1198
1110	4v9c:AA (3.3Å)	1539	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00000ABFE9	RF00177 RF01959 RF01960	Escherichia coli K-12 83333	22902368		Assembly1 NMY:AA:1655 1405,1407~1408,1490~1495 NMY:AA:1656 1417,1419~1420,1477 NMY:AA:1657 902,1513~1515
1111	4v9c:BA (3.3Å)	2897	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00004B0F34	RF02540 RF02541	Escherichia coli K-12 83333	22902368		Assembly1 NMY:BA:3161 1906,1921~1923 NMY:BA:3162 990~992,1157~1158,1162~1164,11 84~1185 NMY:BA:3163 1202,1204~1206,1239~1240 NMY:BA:3164 482,492,494,507~508 NMY:BA:3165 2674,2727~2728,2730~2731 NMY:BA:3166 536~540,550~551,553 NMY:BA:3167 1858~1859,1861,1880,1882~1883
1112	4v9c:CA (3.3Å)	1538	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00000ABFE9	RF00177 RF01959 RF01960	Escherichia coli K-12 83333	22902368		Assembly2 NMY:CA:1672 1406~1408,1489~1491,1493~1494
1113	4v9c:DA (3.3Å)	2897	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00004B0F34	RF02540 RF02541	Escherichia coli K-12 83333	22902368		Assembly2 NMY:DA:3184 1921~1923,1929~1931 NMY:DA:3185 2673~2674,2727~2731 NMY:DA:3186 536~540 NMY:DA:3187 1858~1859,1879~1880,1882 NMY:DA:3188 991~992,1157~1159,1162~1163,11 84 NMY:DA:3189 482,488,492~494,507 NMY:DA:3190 1204~1205,1238~1240
1114	4v9f:0 (2.404Å)	2808	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E02E	RF02540 RF00002	Haloarcula marismortui ATCC 43049 272569	23695244 10937989		Assembly1 CL:0:8185 1300,1329 CL:0:8190 1072,1087,1291 ACY:0:8212 2756,2895~2897 ACY:0:8213 966~967,1002
1115	4v9q:AA (3.4Å)	2832	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DD88	RF02540 RF02541 RF00002	Thermus thermophilus HB27 262724	23824292		Assembly1 BLS:AA:4001 2063~2064,2251~2252,2439,2600~ 2601
1116	4v9q:BV (3.4Å)	77	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000041AF00	RF00005	Alcaligenes sp. 512	23824292		Assembly1 BLS:AA:4001 74~76
1117	4v9q:CA (3.4Å)	2832	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DD88	RF02540 RF02541 RF00002	Thermus thermophilus HB27 262724	23824292		Assembly2 BLS:CA:4405 2063~2064,2251~2252,2439,2600~ 2601
1118	4v9q:DV (3.4Å)	77	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000041AF00	RF00005	Alcaligenes sp. 512	23824292		Assembly2 BLS:CA:4405 74~76
1119	4v9r:BA (3.0Å)	2731	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00001698E8	RF02540 RF02541 RF00002	Thermus thermophilus 274	24412368		Assembly1 FME:AX:101 2085,2463,2597
1120	4v9r:DA (3.0Å)	2714	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00001698E8	RF02540 RF02541 RF00002	Thermus thermophilus 274	24412368		Assembly2 FME:CX:101 2451,2585
1121	4v9s:BA (3.1Å)	2731	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00001698E8	RF02540 RF02541 RF00002	Thermus thermophilus HB8 300852	24412368		Assembly1 FME:AX:101 2085,2463,2597
1122	4v9s:DA (3.1Å)	2714	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00001698E8	RF02540 RF02541 RF00002	Thermus thermophilus HB8 300852	24412368		Assembly2 FME:CX:101 2063,2451,2585
1123	4w29:AA (3.8Å)	1511	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DFCE	RF00177 RF01959 RF01960	Thermus thermophilus HB27 262724	25190797		Assembly1 NMY:AA:1601 1405~1406,1408,1491~1494
1124	4w29:BA (3.8Å)	2879	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DEC7	RF02540 RF02541 RF00002	Thermus thermophilus HB27 262724	25190797		Assembly1 NMY:BA:2902 1831~1832,1933,1974 NMY:BA:2903 1963~1966 NMY:BA:2904 1905,1930,1966~1972,2593
1125	4w29:CA (3.8Å)	1511	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DFCE	RF00177 RF01959 RF01960	Thermus thermophilus HB27 262724	25190797		Assembly2 NMY:CA:1601 1405~1406,1408,1491~1494
1126	4w29:DA (3.8Å)	2879	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DEC7	RF02540 RF02541 RF00002	Thermus thermophilus HB27 262724	25190797		Assembly2 NMY:DA:2901 1831~1832,1933~1934,1974
1127	4w2e:A (2.9Å)	2873	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00001698E8	RF02540 RF02541 RF00002	Thermus thermophilus 274	25104389		Assembly1 PHE:w:107 2451~2452,2585
1128	4w2f:AA (2.4Å)	1497	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DFED	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	25306919		Assembly1 UAM:AA:3232 693,788,794~796,1506
1129	4w2f:AV (2.4Å)	13	N/A	N/A	N/A	synthetic construct 32630	25306919		Assembly1 UAM:AA:3232 14~15
1130	4w2f:CA (2.4Å)	1503	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DFED	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	25306919		Assembly2 UAM:CA:3202 693,788,792,794~796,1506
1131	4w2g:AA (2.55Å)	1498	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DFED	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	25306919		Assembly1 PCY:AA:3231 693,787~788,795~796
1132	4w2g:AY (2.55Å)	74	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS00005AA258	RF00005	Escherichia coli 562	25306919		Assembly1 PCY:AA:3231 34~35
1133	4w2g:CA (2.55Å)	1503	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DFED	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	25306919		Assembly2 PCY:CA:3178 693,787~788,795~796
1134	4w2h:AA (2.7Å)	1497	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DFED	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	25306919		Assembly1 PCY:AA:3191 693,788~789,795~796
1135	4w2h:CA (2.7Å)	1503	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DFED	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	25306919		Assembly2 PCY:CA:3176 693~694,787~788,795~796
1136	4w2i:AA (2.7Å)	1496	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DFED	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	25306922		Assembly1 NEG:AA:3216 965~966,1054,1197~1198 NEG:AA:3217 569,873 NEG:AA:3218 941~942,1336 NEG:AA:3219 669~672,807
1137	4w2i:BA (2.7Å)	2822	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00001698E8	RF02540 RF02541 RF00002	Thermus thermophilus HB8 300852	25306922		Assembly1 NEG:AA:3220 1966~1969,1976~1977 NEG:AA:3221 785~786,801~802,804 NEG:AA:3222 553~554,558~559,580~581 NEG:AW:3004 1963~1966,2616 NEG:AX:3013 2333~2336,2342~2344
1138	4w2i:CA (2.7Å)	1503	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DFED	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	25306922		Assembly2 NEG:CA:3170 965,1054,1197~1198 NEG:CA:3171 569~570,873 NEG:CA:3172 942,1336 NEG:CA:3173 669~672
1139	4w2i:DA (2.7Å)	2800	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00001698E8	RF02540 RF02541 RF00002	Thermus thermophilus HB8 300852	25306922		Assembly2 NEG:CA:3174 1945~1946,1949~1950,1954~1955 NEG:CA:3175 739,754~755,757 NEG:CA:3176 528~529,533,557~559 NEG:CA:3177 13~16,524~525 NEG:CW:3002 1941~1942,1944,2604 NEG:CX:3004 2321~2324,2329~2332
1140	4w90:C (3.118Å)	101	GO:0180001 (F) cyclic-di-AMP binding GO:0010468 (P) regulation of gene expr...	URS000080DDC9	RF00379	Bacillus subtilis 1423	25271255		Assembly1 2BA:C:201 9,25~28,60~62,95~96,100,109~11 0 2BA:C:202 5~7,64,80~82,89~90,114~116
1141	4w92:C (3.209Å)	96	GO:0180001 (F) cyclic-di-AMP binding GO:0010468 (P) regulation of gene expr...	URS000080DDC9	RF00379	Bacillus subtilis 1423	25271255		Assembly1 EDO:C:207 23~24,110 2BA:C:208 5~7,64,80~82,89~90,114~116 2BA:C:209 9,25~28,60~63,95~96,100,109~11 0
1142	4wce:X (3.526Å)	2708	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00001450D9	RF02540 RF02541	Staphylococcus aureus subsp. aureus NCTC 8325 93061	26464510		Assembly1 MPD:X:3001 1604~1605 MPD:X:3002 2549~2550 MPD:X:3003 2088~2089,2470~2471 MPD:X:3004 204,207 MPD:X:3005 1340~1341,1650~1651 MPD:X:3006 691~692 MPD:X:3007 627~628,1289 MPD:X:3008 197~198,712~713 MPD:X:3011 622,1298 EPE:X:3311 2065~2066,2068 SPD:X:3313 1019~1020 SPD:X:3315 2571,2669~2672
1143	4wf1:CA (3.09Å)	1539	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DDC0	RF00177 RF01959 RF01960	Escherichia coli str. K-12 substr. MG1655 511145	25368144		Assembly2 NEG:CA:1657 965,1054,1196~1198
1144	4wf9:X (3.427Å)	2712	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00001450D9	RF02540 RF02541	Staphylococcus aureus subsp. aureus NCTC 8325 93061	26464510		Assembly1 TEL:X:3001 791,2085~2086,2532,2638 MPD:X:3002 1560~1561,1604~1605 MPD:X:3003 2708,2711~2713,2747 MPD:X:3004 1316~1317 MPD:X:3005 2059,2082,2480,2526 MPD:X:3006 508~509 MPD:X:3007 843~845 MPD:X:3008 513~514 MPD:X:3009 572,2807 SPD:X:3362 2478~2479 SPD:X:3363 2571,2669~2670,2672 SPD:X:3364 1975~1978 SPD:X:3365 373,522~523,1248,1275 EOH:X:3368 1384~1385
1145	4wfa:X (3.392Å)	2711	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00001450D9	RF02540 RF02541	Staphylococcus aureus subsp. aureus NCTC 8325 93061	26464510		Assembly1 ZLD:X:3001 2088,2474,2478~2479,2528,2531~ 2533,2612 MPD:X:3003 1316~1317 MPD:X:3005 1560~1561,1605 MPD:X:3006 2740,2744~2746 MPD:X:3007 350,1249~1250 MPD:X:3009 635~637,707 EPE:X:3423 789~791,2637~2639 EPE:X:3424 1698~1700 EPE:X:3425 2289~2290,2292~2293,2300 EPE:X:3426 626~628,1289 SPD:X:3427 1015,1018~1020,1022,1032~1033 SPD:X:3428 2669~2670,2672 SPD:X:3430 513~514 SPD:X:3432 622,1297~1299 SPD:X:3433 638~640,705 SPD:X:3434 1247,1249 EOH:X:3437 691,693
1146	4wfb:X (3.43Å)	2707	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00001450D9	RF02540 RF02541	Staphylococcus aureus subsp. aureus NCTC 8325 93061	26464510		Assembly1 3LK:X:3001 2088,2090,2478~2479,2531~2533, 2612 MPD:X:3003 15~16 MPD:X:3004 884,981 MPD:X:3005 884,982~984 MPD:X:3006 642,702 MPD:X:3007 1315~1317 MPD:X:3009 695~696 MPD:X:3012 1734,2005 MPD:X:3016 626~628,1289 EPE:X:3421 790~791,2638~2639 EPE:X:3422 1822~1823,1849 EPE:X:3423 2651,2654,2804 EPE:X:3424 1073~1075 SPD:X:3425 508,1655 SPD:X:3426 3,2657~2659,2913 SPD:X:3427 2669~2672 SPD:X:3428 1021~1022,1025 SPD:X:3429 638~639 SPD:X:3430 637,707 SPD:X:3431 2431~2432 SPD:X:3432 1340,1650~1652 SPD:X:3434 198~200,849~850
1147	4wfl:A (2.49Å)	107	GO:0006617 (P) SRP-dependent cotransla... GO:0048501 (C) signal recognition part...	URS000080DF51	RF01854	Bacillus subtilis subsp. subtilis str. 168 224308	25270875		Assembly1 NCO:A:202 67~68 NCO:A:205 18,28 NCO:A:206 57~58 NCO:A:208 81~82 NCO:A:209 106~108 NCO:A:212 3,103 NCO:A:213 73~74 NCO:A:214 35,94 NCO:A:217 21,23 NCO:A:218 11,62
1148	4wfm:A (3.1Å)	103	GO:0006617 (P) SRP-dependent cotransla... GO:0048501 (C) signal recognition part...	URS000080E098	RF01854	Bacillus subtilis subsp. subtilis str. 168 224308	25270875		Assembly1 NCO:A:202 57~58 NCO:A:203 18,28~29 NCO:A:204 11,62 NCO:A:206 73~74,88 NCO:A:207 79~80 NCO:A:209 3,103 NCO:A:212 53~54
1149	4wfm:B (3.1Å)	103	GO:0006617 (P) SRP-dependent cotransla... GO:0048501 (C) signal recognition part...	URS000080E098	RF01854	Bacillus subtilis subsp. subtilis str. 168 224308	25270875		Assembly2 NCO:B:201 57~58 NCO:B:202 11,62 NCO:B:203 7,64 NCO:B:205 17~18,28~29 NCO:B:206 73~74,88 NCO:B:207 3,103~104 NCO:B:210 16,68
1150	4wfn:X (3.54Å)	2680	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DEF1	RF02540 RF02541	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 243230	28689968		Assembly1 ERY:X:2902 759,2041,2484,2589~2590
1151	4woi:AA (3.0Å)	1538	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00000ABFE9	RF00177 RF01959 RF01960	Escherichia coli str. K-12 substr. MDS42 1110693	26224058		Assembly1 PAR:AA:1672 1405,1407~1408,1490~1491,1493~ 1494
1152	4woi:BA (3.0Å)	2897	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00004B0F34	RF02540 RF02541	Escherichia coli str. K-12 substr. MDS42 1110693	26224058		Assembly1 PAR:BA:3001 1906,1921~1922,1929~1930 PAR:BA:3002 2673~2674,2727~2731 PAR:BA:3003 536~538,550~551 PAR:BA:3004 482~483,492,494~495,507 PAR:BA:3005 1858~1862,1880~1882
1153	4woi:CA (3.0Å)	2897	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00004B0F34	RF02540 RF02541	Escherichia coli str. K-12 substr. MDS42 1110693	26224058		Assembly2 PAR:CA:3166 2673~2675,2727~2728,2730~2731 PAR:CA:3167 1906,1921~1923,1929~1930 PAR:CA:3168 1858~1861,1878,1880~1881 PAR:CA:3169 536~539,550~551,555 PAR:CA:3170 482,492~495,507~508
1154	4woi:DA (3.0Å)	1539	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00000ABFE9	RF00177 RF01959 RF01960	Escherichia coli str. K-12 substr. MDS42 1110693	26224058		Assembly2 PAR:DA:1654 1405,1407~1408,1490~1494 PAR:DA:1655 1419~1421,1480
1155	4wra:13 (3.05Å)	1505	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E226	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	26037619		Assembly1 PAR:13:1745 1405,1408,1490~1491,1493~1495
1156	4wra:1G (3.05Å)	1504	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E226	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	26037619		Assembly2 PAR:1G:1686 1405~1406,1408,1490~1491,1493~ 1495
1157	4wsd:13 (2.95Å)	1498	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS0000868551	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	26037619		Assembly1 PAR:13:1749 1405~1406,1408,1490~1491,1493~ 1495
1158	4wsd:1G (2.95Å)	1498	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS0000868551	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	26037619		Assembly2 PAR:1G:1697 1405~1406,1408,1491~1495
1159	4wt8:Ab (3.4Å)	1504	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E260	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	25562208		Assembly1 PAR:Ab:1601 1388~1389,1391,1469,1471~1472
1160	4wt8:Bb (3.4Å)	1504	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E260	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	25562208		Assembly2 PAR:Bb:1601 1391,1468~1469,1471~1473
1161	4wt8:C1 (3.4Å)	2807	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E136	RF02540 RF02541 RF00002	Thermus thermophilus HB8 300852	25562208		Assembly1 3V6:C1:3001 2085,2449~2450,2611~2613
1162	4wt8:C4 (3.4Å)	77	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000041AF00	RF00005	Thermus thermophilus HB8 300852	25562208		Assembly1 3V6:C1:3001 76~77
1163	4wt8:D1 (3.4Å)	2807	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E136	RF02540 RF02541 RF00002	Thermus thermophilus HB8 300852	25562208		Assembly2 3V6:D1:3001 2084~2085,2450,2611~2613
1164	4www:RA (3.1Å)	2854	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00004B0F34	RF02540 RF02541	Escherichia coli str. K-12 substr. MG1655 511145	20855725		Assembly1 EM1:RA:3135 748,750,752,2058~2059,2062,250 3,2505,2609,2611
1165	4x4n:B (2.953Å)	32	N/A	URS000080E2D0	N/A	Homo sapiens 9606	25640237	1124	Assembly1 GMP:B:101 15~16 5GP:B:102 14,16~17,19
1166	4x4s:B (3.25Å)	35	N/A	URS000080DD43	N/A	Homo sapiens 9606	25640237	M044_0.6 1124	Assembly1 CTP:A:501 36~37
1167	4x4v:B (2.6Å)	33	N/A	URS000080E308	N/A	Homo sapiens 9606	25640237	1335 1124 s49 1333	Assembly1 TAR:B:501 11,21~22 5GP:B:502 14,16~17,19 5GP:B:503 15~16
1168	4x4v:D (2.6Å)	26	N/A	URS000080E308	N/A	Homo sapiens 9606	25640237		Assembly2 5GP:D:101 16~17
1169	4x62:A (3.4492Å)	1512	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DE21	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	26751643		Assembly1 PAR:A:1601 1407~1408,1491~1495 PAR:A:1602 569,821 PAR:A:1603 31,47~48,51~52,114,355~356,359 ~360 PAR:A:1604 662,664,666,741~743 PAR:A:1605 610~611,622~626 PAR:A:1606 670~672,716
1170	4x64:A (3.35Å)	1512	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DE21	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	26751643		Assembly1 PAR:A:1601 1405,1407~1408,1491~1495 PAR:A:1602 568~569,575,821,875 PAR:A:1603 47~48,51~52,114,355~356,359~36 0 PAR:A:1604 662,664,666,741~743 PAR:A:1605 610~611,622~626 PAR:A:1606 669~671,715~716
1171	4x65:A (3.345Å)	1512	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DE21	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	26751643		Assembly1 PAR:A:1601 1405,1407~1408,1491~1495 PAR:A:1602 569,575,821 PAR:A:1603 47~48,51~52,114,355~356,359~36 0 PAR:A:1604 662,664,740~743 PAR:A:1605 610~611,622~626 PAR:A:1606 670~671,716
1172	4x66:A (3.446Å)	1512	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DE21	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	26751643		Assembly1 PAR:A:1601 1405,1407~1408,1491,1493~1495 PAR:A:1602 569,575,821 PAR:A:1603 47~48,51~52,114,355~356,359~36 0 PAR:A:1604 662,664,740~743 PAR:A:1605 610~611,622~626 PAR:A:1606 670,672,715~716
1173	4xnr:X (2.21Å)	71	GO:0009113 (P) purine nucleobase biosy...	URS000080E2A9	RF00167	Vibrio vulnificus 672	25938715		Assembly1 ADE:X:101 21~22,47,51~52,74~75
1174	4xw0:A (1.81Å)	10	N/A	URS00008FED46	N/A	Homo sapiens 9606	26543073		Assembly1 SO4:A:101 6~7
1175	4xw7:A (2.5Å)	64	GO:0006730 (P) one-carbon metabolic pr... GO:1900371 (P) regulation of purine nu...	URS0000868555	RF01750	Schaalia odontolytica 1660	26144884		Assembly1 AMZ:A:101 11~12,29 IRI:A:115 7~8
1176	4xwf:A (1.8Å)	64	GO:0006730 (P) one-carbon metabolic pr... GO:1900371 (P) regulation of purine nu...	URS0000868555	RF01750	Schaalia odontolytica 1660	26144884		Assembly1 AMZ:A:101 11~12,29 IRI:A:105 7~8 IRI:A:106 60~61 IRI:A:107 58~59 IRI:A:108 10,30
1177	4y1i:A (2.85Å)	100	N/A	URS00008116C1	N/A	Lactococcus lactis subsp. lactis 1360	25794619		Assembly1 GTP:A:201 3,101
1178	4y1i:B (2.85Å)	100	N/A	URS00008116C1	N/A	Lactococcus lactis subsp. lactis 1360	25794619		Assembly1 GTP:A:226 3,101
1179	4y1j:A (2.24Å)	100	N/A	URS00008116BC	N/A	Lactococcus lactis subsp. lactis 1360	25794619		Assembly1 GTP:A:201 3,101
1180	4y1j:B (2.24Å)	100	N/A	URS00008116BC	N/A	Lactococcus lactis subsp. lactis 1360	25794619		Assembly1 GTP:B:202 3,101
1181	4y1m:A (3.0Å)	76	N/A	URS00008116AD	N/A	Escherichia coli 562	25794619		Assembly2 GTP:A:208 2,108
1182	4y1m:B (3.0Å)	107	GO:0030145 (F) manganese ion binding	URS00008116AD	RF00080	Escherichia coli 562	25794619		Assembly1 GTP:B:212 2,108
1183	4y1n:A (3.0Å)	249	GO:0000373 (P) Group II intron splicing	URS0000868528	RF02001	Oceanobacillus iheyensis HTE831 221109	26502156		Assembly1 IRI:A:401 8~10,259 IRI:A:402 70,113~114 IRI:A:403 25,27~29 IRI:A:404 12,14~16,255~256 IRI:A:406 36~37 IRI:A:407 39,243~244 IRI:A:408 242~244 IRI:A:409 40~41 IRI:A:410 119,173 IRI:A:411 264~266 IRI:A:412 31~32 IRI:A:413 164,211~213
1184	4y1n:B (3.0Å)	259	GO:0000373 (P) Group II intron splicing	URS0000868528	RF02001	Oceanobacillus iheyensis HTE831 221109	26502156		Assembly2 IRI:B:401 32,34 IRI:B:402 12,14~15,255 IRI:B:403 8~10,259 IRI:B:404 38~39,243~244 IRI:B:405 242~244 IRI:B:407 80,100~101 IRI:B:408 212~213 IRI:B:409 159~160 IRI:B:410 264~266 IRI:B:411 31~32 IRI:B:412 52~53,169~170 IRI:B:413 64,120 IRI:B:414 119,239~240 IRI:B:415 142,144~146
1185	4y4o:1A (2.3Å)	2872	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00001698E8	RF02540 RF02541 RF00002	Thermus thermophilus HB8 300852	25775268		Assembly1 MPD:1A:4028 449~451
1186	4y4o:1B (2.3Å)	120	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DEE8	RF00001	Thermus thermophilus HB8 300852	25775268		Assembly1 ARG:1B:230 80~82,93~94
1187	4y4o:1a (2.3Å)	1500	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080DFED	RF00177 RF01959 RF01960	Thermus thermophilus HB8 300852	25775268		Assembly1 MPD:1a:1880 345~347
1188	4y4o:2A (2.3Å)	2867	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS00001698E8	RF02540 RF02541 RF00002	Thermus thermophilus HB8 300852	25775268		Assembly2 MPD:2A:3747 1772,1976,1978 MPD:2A:3748 2397,2413~2414 MPD:2B:3020 915~916
1189	4yaz:A (2.0Å)	84	GO:0035438 (F) cyclic-di-GMP binding	URS00008116B1	RF01051	Geobacter 28231	25818298		Assembly2 4BW:A:103 8,11~12,14,40~41,75~76
1190	4yaz:R (2.0Å)	84	GO:0035438 (F) cyclic-di-GMP binding	URS00008116B1	RF01051	Geobacter 28231	25818298		Assembly1 4BW:R:106 8,11~12,14,40~41,75~76
1191	4yb0:A (2.121Å)	83	GO:0035438 (F) cyclic-di-GMP binding	URS00008116A8	RF01051	Geobacter 28231	25818298		Assembly2 GDP:A:101 2,84 C2E:A:102 8,11~12,14,40~41,75~76
1192	4yb0:R (2.121Å)	83	GO:0035438 (F) cyclic-di-GMP binding	URS00008116A8	RF01051	Geobacter 28231	25818298		Assembly1 GDP:R:101 2,84 C2E:R:102 8,11~12,14,40~41,75~76
1193	4yb1:R (2.081Å)	91	GO:0035438 (F) cyclic-di-GMP binding	URS00008116BA	RF03167 RF01051	Vibrio cholerae 666	25818298		Assembly1 4BW:R:102 14,16~17,20~21,46~47,93~94
1194	4ybb:AA (2.1Å)	1534	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000081169C	RF00177 RF01959 RF01960	Escherichia coli K-12 83333	25775265		Assembly1 PG4:AA:1670 774~775,806 MPD:AA:1671 1457~1458 MPD:AA:1676 293,307~308 PUT:AA:1673 453,479~480
1195	4ybb:BA (2.1Å)	1533	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000081169C	RF00177 RF01959 RF01960	Escherichia coli K-12 83333	25775265		Assembly2 PG4:BA:1642 774,806
1196	4ybb:DA (2.1Å)	2897	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS000080E25C	RF02540 RF02541	Escherichia coli K-12 83333	25775265		Assembly1 SPD:DA:3183 855~857 SPD:DA:3187 860~861,910~911,913,2265 SPD:DA:3207 1769~1770,1959,1975 SPD:DA:3225 677,792~793,2440~2442 1PE:DA:3185 22~23,519 1PE:DA:3203 948~949,961 PGE:DA:3186 998~999,1158 PGE:DA:3215 1424,1575 PGE:DA:3226 1693,1831,1975~1976 PUT:DA:3189 504~505,1235~1236 PUT:DA:3195 2628~2629,2781 PUT:DA:3206 1904,1968,2593 PUT:DA:3213 1698,1979 PUT:DA:3214 1132~1133,1136~1137 PUT:DA:3220 698,1554~1555 PUT:DA:3223 787~790,794 PUT:DA:3224 825,2259,2428 MPD:DA:3190 602,655 MPD:DA:3192 1202,1244 MPD:DA:3205 61~63,92~93 MPD:DA:3208 2751~2752 MPD:DA:3211 2451~2452,2506 ACY:DA:3191 59~60,74 PG4:DA:3193 2256~2258,2275 PG4:DA:3217 1349,1383,1406 EDO:DA:3194 1782,2609 EDO:DA:3197 189,205 EDO:DA:3198 2821,2826~2827 EDO:DR:203 998~999 PEG:DA:3200 2008~2009 PEG:DA:3201 978~979,986,1002 PEG:DA:3227 747,2015 PEG:DA:3228 2058~2059 GUN:DA:3212 2814,2831
1197	4ybb:DB (2.1Å)	120	GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome	URS0000049E57	RF00001	Escherichia coli K-12 83333	25775265		Assembly1 EDO:DB:212 84~85,93
1198	4yco:D (2.1Å)	74	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000080E264	RF00005	Escherichia coli K-12 83333	25902496		Assembly1 FMN:A:401 16~17
1199	4yco:E (2.1Å)	67	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000080E264	RF00005	Escherichia coli K-12 83333	25902496		Assembly2 FMN:B:402 16~17
1200	4yco:F (2.1Å)	71	GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation	URS000080E264	RF00005	Escherichia coli K-12 83333	25902496		Assembly3 FMN:C:401 16~17

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Reference:

Chengxin Zhang, P. Lydia Freddolino (2023) FURNA: a database for function annotations of RNA structures, bioRxiv 2023.12.19.572314.

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