SEQ2FUN

FURNA
Download all results in tab-seperated text for 3166 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.
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    # PDB
    (Resolution)
    Length EC number
    & GO term
    RNAcentral Rfam Taxon PubMed ATtRACT
    motif
    Ligand &
    binding nucleotides
    2301 7oax:D
    (2.24Å)

    51 N/A URS0002311967 N/A synthetic
    construct

    32630
    34112799 Assembly1
    SPM:B:102 23,25
    SPM:D:102 14,29~30
    GTP:D:101 2,52
    V5Z:D:103 9,13~15,31~32
    2302 7of2:A
    (2.7Å)

    1410 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080E357 RF02541
    RF02540
    Homo
    sapiens

    9606
    34135319
    591

    590

    M269_0.6

    1165

    1328

    1201

    1228

    M019_0.6

    M089_0.6

    495

    175

    1199

    693

    M106_0.6

    1191

    1193

    156

    M161_0.6

    161

    1395

    M272_0.6

    M013_0.6

    M081_0.6

    1075

    996

    M148_0.6

    M087_0.6

    1310

    1353

    1334

    s25

    1239

    M350_0.6

    s93

    74

    M111_0.6

    M043_0.6

    120

    800

    M088_0.6

    1289

    s44

    1364

    s41

    1100

    1246

    1385

    687

    M016_0.6

    s60
    Assembly1
    GTP:A:3382 1685~1686,1766~1767
    GTP:A:3383 2899,2909~2910,2919
    2303 7of3:A
    (2.7Å)

    1386 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080E357 RF02541
    RF02540
    Homo
    sapiens

    9606
    34135319
    591

    590

    M269_0.6

    1146

    1165

    1328

    1201

    1228

    M019_0.6

    M089_0.6

    495

    175

    M353_0.6

    1199

    693

    M106_0.6

    1191

    1193

    156

    M161_0.6

    43

    161

    1395

    M272_0.6

    M013_0.6

    M081_0.6

    996

    M087_0.6

    1310

    1353

    1334

    s25

    1239

    M350_0.6

    s93

    74

    M111_0.6

    M043_0.6

    120

    800

    33

    M088_0.6

    1289

    s44

    s45

    1364

    s41

    1100

    1246

    1385

    M016_0.6

    1002

    s60
    Assembly1
    GTP:A:3358 1685~1686,1766~1767
    GTP:A:3359 2899,2909~2910,2919
    2304 7of4:A
    (2.7Å)

    1463 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080E357 RF02541
    RF02540
    Homo
    sapiens

    9606
    34135319
    591

    590

    M269_0.6

    1165

    1328

    1201

    1228

    M019_0.6

    M089_0.6

    495

    175

    1199

    693

    M106_0.6

    1191

    1193

    156

    M161_0.6

    M111_0.6

    1271

    1395

    M272_0.6

    M013_0.6

    M081_0.6

    1075

    996

    M087_0.6

    1310

    1353

    1334

    M148_0.6

    1239

    M350_0.6

    s93

    74

    161

    M043_0.6

    120

    800

    s25

    M088_0.6

    1289

    s44

    1364

    s41

    1100

    1246

    1385

    687

    M016_0.6

    s60
    Assembly1
    GTP:A:3387 1685~1686,1766~1767
    GTP:A:3388 2899,2909~2910,2919
    2305 7of5:A
    (2.9Å)

    1389 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080E357 RF02541
    RF02540
    Homo
    sapiens

    9606
    34135319
    591

    590

    M269_0.6

    1146

    1165

    1328

    M019_0.6

    M089_0.6

    175

    1199

    693

    M106_0.6

    1191

    156

    M161_0.6

    161

    1395

    M272_0.6

    M013_0.6

    M081_0.6

    1075

    996

    M087_0.6

    1353

    1334

    s25

    1239

    M350_0.6

    s93

    74

    M111_0.6

    M043_0.6

    800

    33

    M088_0.6

    1289

    s44

    1364

    s41

    1100

    1246

    1385

    M148_0.6

    M016_0.6

    1002

    s60
    Assembly1
    GTP:A:3369 1685~1686,1766~1767
    GTP:A:3370 2899,2909~2910,2919
    2306 7of6:A
    (2.6Å)

    1463 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080E357 RF02541
    RF02540
    Homo
    sapiens

    9606
    34135319
    591

    590

    M269_0.6

    1165

    1328

    1201

    1228

    M019_0.6

    M089_0.6

    495

    175

    1199

    693

    M106_0.6

    1191

    1193

    156

    M161_0.6

    M111_0.6

    1271

    1395

    M272_0.6

    M013_0.6

    M081_0.6

    1075

    996

    M087_0.6

    1310

    1353

    1334

    M148_0.6

    1239

    M350_0.6

    s93

    74

    161

    M043_0.6

    120

    800

    s25

    M088_0.6

    1289

    s44

    1364

    s41

    1100

    1246

    1385

    687

    M016_0.6

    s60
    Assembly1
    GTP:A:3386 1685~1686,1766~1767
    GTP:A:3387 2899,2909~2910,2919
    2307 7og4:XA
    (3.8Å)

    1498 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00021ED93A RF02541
    RF02540
    Homo
    sapiens

    9606
    32812867
    591

    590

    M269_0.6

    1165

    1328

    1228

    M019_0.6

    175

    1199

    693

    M106_0.6

    156

    1191

    1075

    M161_0.6

    43

    M111_0.6

    1271

    1395

    M272_0.6

    M013_0.6

    M081_0.6

    994

    996

    M087_0.6

    1310

    1353

    1334

    M148_0.6

    1239

    M350_0.6

    s93

    74

    161

    M043_0.6

    800

    s25

    33

    M088_0.6

    1289

    s44

    1364

    s41

    1100

    1246

    1385

    687

    M016_0.6

    s60
    Assembly1
    H8Q:XA:5144 1956~1957,2502,2721,2725,2992,
    3073,3096~3097

    DOL:XA:5145 2724~2726,2938~2939,2990~2992,
    3071~3072
    2308 7oic:A
    (3.1Å)

    1383 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00023119E2 RF02541
    RF02540
    Homo
    sapiens

    9606
    34315873
    591

    590

    M269_0.6

    1165

    1328

    1201

    M019_0.6

    495

    175

    1199

    693

    M106_0.6

    1191

    1193

    156

    M161_0.6

    43

    161

    1395

    M272_0.6

    M013_0.6

    M081_0.6

    1075

    996

    M087_0.6

    1353

    1334

    s25

    1239

    M350_0.6

    s14

    s93

    74

    M111_0.6

    104

    M043_0.6

    120

    800

    M088_0.6

    1289

    s44

    1364

    s41

    1100

    1246

    1385

    M148_0.6

    M016_0.6

    s60

    s61
    Assembly1
    C:A:1673 1231,1239
    A:A:1674 1229~1230,1239~1240
    2309 7oiz:A
    (2.9Å)

    1519 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00023119D3 RF00177
    RF01959
    RF01960
    Escherichia
    coli
    K-12

    83333
    34403461 Assembly1
    PAR:A:1601 1405,1408,1489~1494
    2310 7oiz:a
    (2.9Å)

    2753 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0002311999 RF02540
    RF02541
    Escherichia
    coli
    K-12

    83333
    34403461 Assembly1
    TRP:a:6206 746,748,752,2609
    2311 7oj0:a
    (3.5Å)

    2807 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00023119BB RF02540
    RF02541
    Escherichia
    coli
    K-12

    83333
    34403461 Assembly1
    TRP:a:6209 746,748,752,2609
    2312 7ood:3
    (3.4Å)

    2879 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000AB9B3C RF02540
    RF02541
    Mycoplasmoides
    pneumoniae
    M129

    272634
    36171285
    36171285
    Assembly1
    CLM:3:3026 2068,2460,2511,2513
    2313 7orj:T
    (3.9Å)

    17 N/A URS00023358F9 N/A 2560547 35173159 Assembly1
    ATP:A:2302 22~23
    2314 7ork:T
    (3.1Å)

    18 N/A URS00023358F9 N/A La
    Crosse
    virus

    11577
    35173159 Assembly1
    ATP:A:2304 22~23
    2315 7orn:T
    (2.8Å)

    18 N/A URS00023358F9 N/A 2560547 35173159 Assembly1
    ATP:A:2301 22~23
    2316 7os0:D
    (2.2Å)

    48 N/A URS0002311A20 N/A Rhodobacter
    capsulatus
    SB
    1003

    272942
    35058543 Assembly2
    EDO:D:101 28~29,31
    EDO:D:102 28~29
    2317 7os0:F
    (2.2Å)

    48 N/A URS0002311A20 N/A Rhodobacter
    capsulatus
    SB
    1003

    272942
    35058543 Assembly1
    EDO:A:1403 17~18
    EDO:F:101 28~29,31
    2318 7otc:A
    (2.9Å)

    2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00023358D7 RF02540
    RF02541
    Escherichia
    coli
    BL21(DE3)

    469008
    35500116 Assembly1
    ATP:A:3001 369,404
    PUT:A:3002 743,2581
    PUT:A:3003 805,829~831,2068
    PUT:A:3004 860,910,913
    PUT:A:3005 863~864,908~909
    PUT:A:3006 2518,2540
    PUT:A:3007 2018,2055,2057
    PUT:A:3008 2508,2576
    PUT:A:3144 1214~1216
    SPD:A:3009 748~750,1271,1615
    SPD:A:3010 945,2448~2449
    2319 7ozq:G
    (1.91Å)

    32 N/A URS00023119B0 N/A Saccharomyces
    cerevisiae

    4932
    34475498 Assembly4
    ACT:G:101 25~26
    2320 7ozq:H
    (1.91Å)

    32 N/A URS00023119B0 N/A Saccharomyces
    cerevisiae

    4932
    34475498 Assembly1
    CL:H:102 10~11
    2321 7p2e:A
    (2.4Å)

    955 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0001A24B4C RF00177 Homo
    sapiens

    9606
    36480258
    1321

    886

    1302

    156

    748

    749

    1207

    M027_0.6

    979

    M089_0.6

    82

    495

    175

    399

    492

    s44

    M043_0.6

    M033_0.6

    M329_0.6

    1194

    1197

    1196

    938

    M142_0.6

    509

    1290

    1031

    760

    994

    M164_0.6

    1312

    1273

    779

    778

    s14

    120

    121

    M047_0.6

    M169_0.6

    M274_0.6

    M325_0.6

    1354

    78

    800

    17

    1186

    M331_0.6

    1241

    M143_0.6

    1364

    M016_0.6

    33

    s61
    Assembly1
    NAD:A:1701 781~782,948,1046,1048
    SPM:A:1702 944~946,1044~1046,1048,1110
    5I0:A:1703 655~656,898~899,1166~1167,1556
    2322 7p3k:a
    (2.9Å)

    2753 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0002311999 RF02540
    RF02541
    Escherichia
    coli
    K-12

    83333
    34403461 Assembly1
    CLM:a:6206 2061~2062,2451~2452,2503~2504,
    2506
    2323 7p7q:A
    (2.4Å)

    2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0002335906 RF02540
    RF02541
    RF00002
    Enterococcus
    faecalis

    1351
    35387982
    30404935
    Assembly1
    PUT:A:3136 1716,1998~1999
    2324 7p7q:a
    (2.4Å)

    1521 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00023358DE RF00177
    RF01959
    RF01960
    Enterococcus
    faecalis

    1351
    35387982
    30404935
    Assembly1
    SCM:a:1652 1090~1091,1093,1095,1217~1219,
    1412~1413

    PUT:a:1669 396~397,414
    2325 7p7r:a
    (2.9Å)

    1521 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00023358DE RF00177
    RF01959
    RF01960
    Enterococcus
    faecalis
    V583

    226185
    35387982
    30404935
    Assembly1
    PUT:a:1664 396~397,414
    SCM:a:1675 1090~1091,1093,1095~1096,1217~
    1219,1412~1413
    2326 7p7s:a
    (3.0Å)

    1521 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00023358DE RF00177
    RF01959
    RF01960
    Enterococcus
    faecalis

    1351
    35387982
    30404935
    Assembly1
    PUT:a:1664 396~397
    SCM:a:1675 1090~1091,1093,1095~1096,1217~
    1220,1413~1414
    2327 7p7t:a
    (2.9Å)

    1521 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00023358DE RF00177
    RF01959
    RF01960
    Enterococcus
    faecalis

    1351
    35387982
    30404935
    Assembly1
    SCM:a:1615 1090~1091,1093,1095~1096,1217~
    1219,1412~1413

    PUT:a:1627 396~397
    2328 7p7u:a
    (3.1Å)

    1521 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00023358DE RF00177
    RF01959
    RF01960
    Enterococcus
    faecalis

    1351
    35387982
    30404935
    Assembly1
    PUT:a:1610 396~397
    SCM:a:1660 1090~1091,1093,1095~1096,1217~
    1219,1412~1413
    2329 7pd3:A
    (3.4Å)

    1280 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0002311A1E RF02541
    RF02540
    Homo
    sapiens

    9606
    34609277
    591

    1165

    M269_0.6

    156

    M013_0.6

    1228

    M089_0.6

    1199

    693

    1191

    1075

    M111_0.6

    1271

    1395

    M272_0.6

    1328

    M081_0.6

    1310

    1353

    1334

    M148_0.6

    1239

    M350_0.6

    s14

    74

    161

    s25

    1289

    s44

    1100

    1246

    1385

    687

    800

    s60

    s61
    Assembly1
    OMG:A:3301 2994,3039
    G:A:3307 3035~3036
    G:A:3311 3004,3007,3033
    G:A:3318 2999~3000
    G:A:3332 1993~1994,2503,2505
    G:A:3344 2502~2503
    G:A:3382 3011~3012,3026~3027
    A:A:3309 3007~3008,3032~3033
    A:A:3310 3033~3034
    A:A:3316 2695,2718,2940,2991
    A:A:3321 2717,2719
    A:A:3326 2476,2994~2995
    A:A:3331 2502~2503,2927
    A:A:3333 1993,2507
    A:A:3337 2736~2737,2923~2924
    A:A:3354 2713,2715
    A:A:3385 2458,2669,2710~2711
    A:L:201 3034~3035
    C:A:3313 2232,3002~3003
    C:A:3314 2232,2978,3001~3002
    C:A:3317 2940,2994
    C:A:3323 2996~2997
    C:A:3339 2925~2926
    C:A:3342 2506,2646
    C:A:3348 2719~2720
    C:A:3352 2685,2716~2717
    U:A:3315 3000~3001
    U:A:3322 2714,2997
    U:A:3345 1962,2502
    U:A:3347 1956,2720~2721
    U:A:3349 2312,2676~2677
    U:A:3353 2685~2686,2715~2716
    U:A:3355 2711~2712
    PSU:A:3324 2995~2996
    2330 7phb:3
    (4.9Å)

    2878 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000AB9B3C RF02540
    RF02541
    Mycoplasmoides
    pneumoniae
    M129

    272634
    36171285 Assembly1
    CLM:3:3001 2068,2460,2511~2512,2514
    2331 7pib:5
    (4.7Å)

    1493 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00019B76CF RF00177
    RF01959
    RF01960
    Mycoplasmoides
    pneumoniae
    M129

    272634
    36171285 Assembly1
    SCM:5:1601 1054~1055,1057,1059,1166~1167,
    1361~1362
    2332 7pjs:a
    (2.35Å)

    1540 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00000ABFE9 RF00177
    RF01959
    RF01960
    Escherichia
    coli

    562
    N/A Assembly1
    AM2:a:1682 1408,1491,1493~1495
    AM2:a:1684 1425,1429~1431,1471~1473
    AM2:a:1685 833~838,846,850
    AM2:a:1689 818~820,855,868,871
    2333 7pjt:a
    (6.0Å)

    1540 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00000ABFE9 RF00177
    RF01959
    RF01960
    Escherichia
    coli

    562
    34635670 Assembly1
    AM2:a:2001 1491,1493~1494
    2334 7pju:a
    (9.5Å)

    1540 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00000ABFE9 RF00177
    RF01959
    RF01960
    Escherichia
    coli
    K-12

    83333
    34635670 Assembly1
    AM2:a:2001 1408,1491~1495
    2335 7pjv:a
    (3.1Å)

    1540 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00000ABFE9 RF00177
    RF01959
    RF01960
    Escherichia
    coli
    K-12

    83333
    34635670 Assembly1
    AM2:a:1648 1408,1491~1495
    AM2:a:1652 833~835,837,846,848,850
    AM2:a:1657 818,820,854~856,868~869,871
    2336 7pjw:a
    (4.0Å)

    1540 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00000ABFE9 RF00177
    RF01959
    RF01960
    Escherichia
    coli

    562
    34635670 Assembly1
    AM2:a:2001 1408~1409,1491,1494
    2337 7pjx:a
    (6.5Å)

    1540 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00000ABFE9 RF00177
    RF01959
    RF01960
    Escherichia
    coli

    562
    34635670 Assembly1
    AM2:a:2001 1408,1491,1493~1495
    2338 7pjy:a
    (3.1Å)

    1540 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00000ABFE9 RF00177
    RF01959
    RF01960
    Escherichia
    coli
    K-12

    83333
    34635670 Assembly1
    AM2:a:1620 1408,1491,1493~1495
    AM2:a:1626 833~835,850~851
    AM2:a:1628 1425,1429,1471~1475
    AM2:a:1636 818,820,855~856,868,871
    2339 7pjz:a
    (6.0Å)

    1540 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00000ABFE9 RF00177
    RF01959
    RF01960
    Escherichia
    coli

    562
    34635670 Assembly1
    AM2:a:2001 1408,1491~1495
    2340 7pmm:C
    (3.0Å)

    42 N/A URS0002616B6B N/A synthetic
    construct

    32630
    37221012 Assembly1
    POP:C:101 1~2
    2341 7pnx:A
    (2.76Å)

    951 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0001A24B4C RF00177 Homo
    sapiens

    9606
    35676484
    1321

    886

    1302

    156

    748

    749

    1207

    M027_0.6

    979

    M089_0.6

    82

    495

    175

    399

    492

    s44

    M043_0.6

    M033_0.6

    M329_0.6

    1194

    1197

    1196

    938

    M142_0.6

    509

    1290

    1031

    760

    994

    M164_0.6

    1273

    779

    778

    s14

    120

    121

    M047_0.6

    M169_0.6

    M274_0.6

    M325_0.6

    1354

    78

    800

    17

    1186

    M331_0.6

    1241

    M143_0.6

    1364

    M016_0.6

    33

    s61
    Assembly1
    NAD:A:1701 781~783,948,1046,1048
    2342 7pny:A
    (3.06Å)

    951 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0001A24B4C RF00177 Homo
    sapiens

    9606
    35676484
    1321

    886

    1302

    156

    748

    749

    1207

    M027_0.6

    979

    M089_0.6

    82

    495

    175

    399

    492

    s44

    M043_0.6

    M033_0.6

    M329_0.6

    1194

    1197

    1196

    938

    M142_0.6

    509

    1290

    1031

    760

    994

    M164_0.6

    1273

    779

    778

    s14

    120

    121

    M047_0.6

    M169_0.6

    M274_0.6

    M325_0.6

    1354

    78

    800

    17

    1186

    M331_0.6

    1241

    M143_0.6

    1364

    M016_0.6

    33

    s61
    Assembly1
    NAD:A:1701 781~782,948,1046,1048
    2343 7pnz:A
    (3.09Å)

    951 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0001A24B4C RF00177 Homo
    sapiens

    9606
    35676484
    1321

    886

    1302

    156

    748

    749

    1207

    M027_0.6

    979

    M089_0.6

    82

    495

    175

    399

    492

    s44

    M043_0.6

    M033_0.6

    M329_0.6

    1194

    1197

    1196

    938

    M142_0.6

    509

    1290

    1031

    760

    994

    M164_0.6

    1273

    779

    778

    s14

    120

    121

    M047_0.6

    M169_0.6

    M274_0.6

    M325_0.6

    1354

    78

    800

    17

    1186

    M331_0.6

    1241

    M143_0.6

    1364

    M016_0.6

    33

    s61
    Assembly1
    NAD:A:1701 781~783,948,1046,1048
    2344 7po0:A
    (2.9Å)

    951 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0001A24B4C RF00177 Homo
    sapiens

    9606
    35676484
    1321

    886

    1302

    156

    748

    749

    1207

    M027_0.6

    979

    M089_0.6

    82

    495

    175

    399

    492

    s44

    M043_0.6

    M033_0.6

    M329_0.6

    1194

    1197

    1196

    938

    M142_0.6

    509

    1290

    1031

    760

    994

    M164_0.6

    1273

    779

    778

    s14

    120

    121

    M047_0.6

    M169_0.6

    M274_0.6

    M325_0.6

    1354

    78

    800

    17

    1186

    M331_0.6

    1241

    M143_0.6

    1364

    M016_0.6

    33

    s61
    Assembly1
    NAD:A:1701 781~783,948,1046,1048
    2345 7pwg:1
    (2.75Å)

    2450 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00023358CC RF02543
    RF02540
    Giardia
    lamblia
    ATCC
    50803

    184922
    35100413 Assembly1
    PGE:1:3063 39~40,89~91,2186
    2346 7pzy:1
    (2.32Å)

    3209 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000C2FD9C RF02540
    RF02543
    Candida
    albicans
    SC5314

    237561
    35613268 Assembly1
    SPD:1:3401 39~40,91~93,2735
    SPD:1:3402 280,282
    SPD:1:3404 1520~1522,1591~1592,1602~1604
    SPD:1:3405 424,633~636,2356
    SPD:1:3406 948~950,1113,1137~1138
    SPD:1:3407 1485~1486,1834~1836,1849~1850
    SPD:1:3408 27,59~61,78~79,326~327
    SPD:1:3409 31~33
    SPD:1:3410 1144~1145,1166~1168,1174
    SPD:1:3411 908~910
    PUT:1:3403 1443,2332~2333
    2347 7pzy:4
    (2.32Å)

    158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000082EA4 RF00002 Candida
    albicans
    SC5314

    237561
    35613268 Assembly1
    PUT:4:201 42~44
    2348 7q08:1
    (2.56Å)

    3209 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000C2FD9C RF02540
    RF02543
    Candida
    albicans
    SC5314

    237561
    35613268 Assembly1
    SPD:1:3401 39~40,91~93,2735
    3HE:1:3402 91~92,2735~2736,2766
    2349 7q0f:1
    (2.64Å)

    3209 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000C2FD9C RF02540
    RF02543
    Candida
    albicans
    SC5314

    237561
    35613268 Assembly1
    SPD:1:3401 39~40,91~93,2735
    3K5:1:3402 2736,2738,2765~2766
    2350 7q0p:1
    (2.77Å)

    3209 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000C2FD9C RF02540
    RF02543
    Candida
    albicans
    SC5314

    237561
    35613268 Assembly1
    SPD:1:3401 39~40,91~93,2735
    SPD:1:3402 280,282
    ANM:1:3403 2381,2792~2793,2844~2845,2847
    2351 7q0r:1
    (2.67Å)

    3209 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000C2FD9C RF02540
    RF02543
    Candida
    albicans
    SC5314

    237561
    35613268 Assembly1
    SPD:1:3401 39~40,91~93,2735
    SPD:1:3402 280,282
    BLS:1:3403 2383~2384,2591,2780,2941~2942
    2352 7q4k:BA
    (3.0Å)

    2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080E25C RF02541 Escherichia
    coli

    562
    37393329 Assembly1
    ERY:BA:3001 2058~2059,2062,2503,2611
    2353 7q7x:B
    (2.8Å)

    24 N/A URS00023358C9 N/A synthetic
    construct

    32630
    35301481 Assembly1
    GUN:C:101 12~13
    2354 7q7x:C
    (2.8Å)

    24 N/A URS00023358B5 N/A synthetic
    construct

    32630
    35301481 Assembly1
    GUN:C:101 38,42~43
    2355 7q7y:B
    (2.9Å)

    24 N/A URS00023358C9 N/A synthetic
    construct

    32630
    35301481 Assembly1
    GUN:C:103 12~13
    2356 7q7y:C
    (2.9Å)

    24 N/A URS00023358B5 N/A synthetic
    construct

    32630
    35301481 Assembly1
    GUN:C:103 38,42~43
    2357 7q7z:B
    (3.26Å)

    24 N/A URS00023358C9 N/A synthetic
    construct

    32630
    35301481 Assembly1
    GUN:C:101 12~13
    2358 7q7z:C
    (3.26Å)

    24 N/A URS00023358B5 N/A synthetic
    construct

    32630
    35301481 Assembly1
    GUN:C:101 38,42~43
    2359 7q7z:E
    (3.26Å)

    24 N/A URS00023358C9 N/A synthetic
    construct

    32630
    35301481 Assembly2
    GUN:F:101 12~13
    2360 7q7z:F
    (3.26Å)

    24 N/A URS00023358B5 N/A synthetic
    construct

    32630
    35301481 Assembly2
    GUN:F:101 38,42~43
    2361 7q80:B
    (3.14Å)

    24 N/A URS00023358C9 N/A synthetic
    construct

    32630
    35301481 Assembly1
    GUN:C:101 12~13
    2362 7q80:C
    (3.14Å)

    24 N/A URS00023358B5 N/A synthetic
    construct

    32630
    35301481 Assembly1
    GUN:C:101 38,42~43
    2363 7q80:E
    (3.14Å)

    24 N/A URS00023358C9 N/A synthetic
    construct

    32630
    35301481 Assembly2
    GUN:F:101 12~13
    2364 7q80:F
    (3.14Å)

    24 N/A URS00023358B5 N/A synthetic
    construct

    32630
    35301481 Assembly2
    GUN:F:101 38,42~43
    2365 7q81:B
    (2.85Å)

    24 N/A URS00023358C9 N/A synthetic
    construct

    32630
    35301481 Assembly1
    GUN:C:101 12~13
    2366 7q81:C
    (2.85Å)

    24 N/A URS00023358B5 N/A synthetic
    construct

    32630
    35301481 Assembly1
    GUN:C:101 38,42~43
    2367 7q82:B
    (2.95Å)

    24 N/A URS00023358C9 N/A synthetic
    construct

    32630
    35301481 Assembly1
    GUN:C:101 12~13
    2368 7q82:C
    (2.95Å)

    24 N/A URS00023358B5 N/A synthetic
    construct

    32630
    35301481 Assembly1
    GUN:C:101 38,42~43
    2369 7qi4:A
    (2.21Å)

    1558 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00023359E4 RF02541
    RF02540
    Homo
    sapiens

    9606
    38769321
    38769321
    37503168

    591

    590

    M269_0.6

    1165

    1328

    1228

    M019_0.6

    175

    1199

    693

    M106_0.6

    156

    1191

    1075

    M161_0.6

    M111_0.6

    1271

    1395

    M272_0.6

    M013_0.6

    M081_0.6

    994

    996

    M087_0.6

    1310

    1353

    1334

    M148_0.6

    1239

    M350_0.6

    120

    74

    161

    M043_0.6

    s93

    800

    s25

    33

    M088_0.6

    1289

    s44

    1364

    s41

    1100

    1246

    1385

    687

    M016_0.6

    s60
    Assembly1
    SPD:A:3301 2538~2539,2634~2635
    SPD:A:3302 2459~2461
    SPD:A:3303 2233,2687~2688,2696~2697,3104
    PUT:A:3304 1960,2431
    2370 7qi4:AA
    (2.21Å)

    954 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00008F947B RF00177 Homo
    sapiens

    9606
    38769321
    38769321
    37503168

    1321

    886

    1302

    156

    748

    749

    1207

    M027_0.6

    979

    M089_0.6

    82

    495

    175

    399

    492

    s44

    M043_0.6

    M033_0.6

    M329_0.6

    1194

    1197

    1196

    938

    M142_0.6

    509

    1290

    1031

    760

    994

    M164_0.6

    1312

    1273

    779

    778

    s14

    120

    121

    M047_0.6

    M169_0.6

    M274_0.6

    M325_0.6

    1354

    78

    800

    17

    1186

    M331_0.6

    1241

    M143_0.6

    1364

    M016_0.6

    33

    s61
    Assembly1
    NAD:AA:1701 781~782,948,1046,1048
    SPM:AA:1702 944~946,1045~1046,1048
    SPD:AA:1703 1254,1330~1331,1333~1335
    2371 7qi5:A
    (2.63Å)

    1558 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00021ED93A RF02541 Homo
    sapiens

    9606
    38769321
    38769321
    37503168

    591

    590

    M269_0.6

    1165

    1328

    1228

    M019_0.6

    175

    1199

    693

    M106_0.6

    156

    1191

    1075

    M161_0.6

    M111_0.6

    1271

    1395

    M272_0.6

    M013_0.6

    M081_0.6

    994

    996

    M087_0.6

    1310

    1353

    1334

    M148_0.6

    1239

    M350_0.6

    120

    74

    161

    M043_0.6

    s93

    800

    s25

    33

    M088_0.6

    1289

    s44

    1364

    s41

    1100

    1246

    1385

    687

    M016_0.6

    s60
    Assembly1
    SPD:A:3301 2538,2635
    SPD:A:3302 2458~2461
    SPD:A:3303 2233,2687~2688,2697,3104
    PUT:A:3304 1960,2431
    2372 7qi5:AA
    (2.63Å)

    954 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00008F947B RF00177 Homo
    sapiens

    9606
    38769321
    38769321
    37503168

    1321

    886

    1302

    156

    748

    749

    1207

    M027_0.6

    979

    M089_0.6

    82

    495

    175

    399

    492

    s44

    M043_0.6

    M033_0.6

    M329_0.6

    1194

    1197

    1196

    938

    M142_0.6

    509

    1290

    1031

    760

    994

    M164_0.6

    1312

    1273

    779

    778

    s14

    120

    121

    M047_0.6

    M169_0.6

    M274_0.6

    M325_0.6

    1354

    78

    800

    17

    1186

    M331_0.6

    1241

    M143_0.6

    1364

    M016_0.6

    33

    s61
    Assembly1
    NAD:AA:1701 781~782,947,1046,1048
    SPM:AA:1702 944~946,1045,1048
    SPD:AA:1703 1254,1330~1331,1333~1335
    2373 7qi6:A
    (2.98Å)

    1558 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00021ED93A RF02541 Homo
    sapiens

    9606
    38769321
    38769321
    37503168

    591

    590

    M269_0.6

    1165

    1328

    1228

    M019_0.6

    175

    1199

    693

    M106_0.6

    156

    1191

    1075

    M161_0.6

    M111_0.6

    1271

    1395

    M272_0.6

    M013_0.6

    M081_0.6

    994

    996

    M087_0.6

    1310

    1353

    1334

    M148_0.6

    1239

    M350_0.6

    120

    74

    161

    M043_0.6

    s93

    800

    s25

    33

    M088_0.6

    1289

    s44

    1364

    s41

    1100

    1246

    1385

    687

    M016_0.6

    s60
    Assembly1
    SPD:A:3301 2538,2635
    SPD:A:3302 2459~2461
    SPD:A:3303 2233,2687~2688,2696~2697
    PUT:A:3304 1960,2431
    2374 7qi6:AA
    (2.98Å)

    954 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00008F947B RF00177 Homo
    sapiens

    9606
    38769321
    38769321
    37503168

    1321

    886

    1302

    156

    748

    749

    1207

    M027_0.6

    979

    M089_0.6

    82

    495

    175

    399

    492

    s44

    M043_0.6

    M033_0.6

    M329_0.6

    1194

    1197

    1196

    938

    M142_0.6

    509

    1290

    1031

    760

    994

    M164_0.6

    1312

    1273

    779

    778

    s14

    120

    121

    M047_0.6

    M169_0.6

    M274_0.6

    M325_0.6

    1354

    78

    800

    17

    1186

    M331_0.6

    1241

    M143_0.6

    1364

    M016_0.6

    33

    s61
    Assembly1
    NAD:AA:1701 781,948~949,1046,1048
    SPM:AA:1702 945~946,1045~1046,1048
    SPD:AA:1703 1254,1331,1333~1335
    2375 7qiw:2
    (2.35Å)

    3098 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00021745CD RF02540
    RF02543
    Solanum
    lycopersicum

    4081
    35643637 Assembly1
    SPM:2:3480 1151,1153~1154
    SPM:2:3481 44,46~47,277,279~280
    SPM:2:3483 1540~1541,1591~1592
    SPD:2:3482 38~39,90~92,2767
    2376 7qiw:8
    (2.35Å)

    159 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00023359E6 RF00002 Solanum
    lycopersicum

    4081
    35643637 Assembly1
    SPM:2:3483 116~117
    2377 7qiy:2
    (2.58Å)

    474 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00023359C7 RF01960
    RF01959
    RF00177
    Solanum
    lycopersicum

    4081
    35643637 Assembly1
    PUT:2:1908 1591~1592,1612~1613
    2378 7qiz:2
    (2.38Å)

    3098 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00021745CD RF02543 Solanum
    lycopersicum

    4081
    35643637 Assembly1
    SPM:2:3479 1151,1153
    SPM:2:3480 44,46~47,277,279
    SPM:2:3482 1540~1541,1591~1592
    SPD:2:3481 38~39,90~92,2767
    2379 7qiz:8
    (2.38Å)

    159 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00023359E6 RF00002 Solanum
    lycopersicum

    4081
    35643637 Assembly1
    SPM:2:3482 116~117
    2380 7qiz:S2
    (2.38Å)

    1584 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0002349D61 RF01960
    RF02542
    RF01959
    RF00177
    Solanum
    lycopersicum

    4081
    35643637 Assembly1
    PUT:S2:1927 1592~1593,1613
    2381 7qqp:A
    (2.6Å)

    84 N/A URS000261771F RF02348 synthetic
    construct

    32630
    36306733 Assembly1
    EDO:A:107 63~64
    EDO:A:108 3~4
    2382 7qr3:C
    (2.18Å)

    69 EC:3.1.-.-
    GO:0004540 (F) RNA nuclease activity
    URS0002617738 RF00622 Pan
    troglodytes

    9598
    N/A Assembly1
    GOL:C:101 57~58
    2383 7qsh:A
    (0.86Å)

    25 N/A URS000268136D N/A synthetic
    construct

    32630
    35687141 Assembly1
    HYJ:A:2702 2649,2671~2673
    GOL:A:2703 2654,2656
    2384 7r81:A1
    (2.7Å)

    3123 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0002311989 RF02540
    RF02543
    Neurospora
    crassa

    5141
    34815343
    M206_0.6
    Assembly1
    3HE:A1:8001 93,2723~2724,2753~2754
    SPD:A1:8002 40~41,92~94
    2385 7r97:C
    (1.804Å)

    28 N/A URS000080DE20 N/A Escherichia
    coli

    562
    35829618
    30916338
    Assembly1
    TRS:C:103 11~12
    EDO:C:105 6~8
    2386 7r97:D
    (1.804Å)

    28 N/A URS000080DE20 N/A Escherichia
    coli

    562
    35829618
    30916338
    Assembly1
    TRS:D:103 11~12
    EDO:D:104 5~6
    EDO:D:105 4~5
    2387 7rex:A
    (2.6Å)

    34 GO:0008616 (P) queuosine biosynthetic ... URS00023119CB RF00522 Carnobacterium
    antarcticum

    2126436
    N/A Assembly1
    PRF:A:101 12,16,31~32
    PRF:A:102 5,17~18,30
    2388 7rex:B
    (2.6Å)

    33 GO:0008616 (P) queuosine biosynthetic ... URS00023119CB RF00522 Carnobacterium
    antarcticum

    2126436
    N/A Assembly2
    PRF:B:101 12,16,31~32
    PRF:B:102 5~6,17~18,30
    2389 7rex:C
    (2.6Å)

    30 N/A URS00023119CB N/A Carnobacterium
    antarcticum

    2126436
    N/A Assembly3
    PRF:C:101 12,31
    PRF:C:102 5~6,17~18,30
    2390 7rq8:1A
    (2.5Å)

    2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00001698E8 RF02540
    RF02541
    RF00002
    Thermus
    thermophilus
    HB8

    300852
    34707295 Assembly1
    6IF:1A:4109 2058~2059,2061,2451~2452,2503,
    2505~2506,2585
    2391 7rq8:2A
    (2.5Å)

    2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00001698E8 RF02540
    RF02541
    RF00002
    Thermus
    thermophilus
    HB8

    300852
    34707295 Assembly2
    6IF:2A:3731 2058,2061,2451~2452,2503,2505~
    2506,2585
    2392 7rq9:1A
    (2.6Å)

    2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00001698E8 RF02540
    RF02541
    RF00002
    Thermus
    thermophilus
    HB8

    300852
    34707295 Assembly1
    6IF:1A:4089 2058,2061,2451~2452,2503~2506,
    2585
    2393 7rq9:2A
    (2.6Å)

    2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00001698E8 RF02540
    RF02541
    RF00002
    Thermus
    thermophilus
    HB8

    300852
    34707295 Assembly2
    6IF:2A:3857 2058~2059,2061,2451~2452,2503,
    2505~2506
    2394 7rqa:1A
    (2.4Å)

    2872 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00001698E8 RF02540
    RF02541
    RF00002
    Thermus
    thermophilus
    HB8

    300852
    35165455 Assembly1
    MPD:1A:4029 422~424
    2395 7rqa:1B
    (2.4Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8

    300852
    35165455 Assembly1
    ARG:1B:231 80~82,94
    2396 7rqa:1a
    (2.4Å)

    1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DFED RF00177
    RF01959
    RF01960
    Thermus
    thermophilus
    HB8

    300852
    35165455 Assembly1
    MPD:1a:1881 345~347
    2397 7rqa:2A
    (2.4Å)

    2867 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00001698E8 RF02540
    RF02541
    RF00002
    Thermus
    thermophilus
    HB8

    300852
    35165455 Assembly2
    MRD:2A:3738 1771~1772,1976
    MPD:2A:3739 2397,2413
    MPD:2B:221 915~916
    2398 7rqa:2B
    (2.4Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8

    300852
    35165455 Assembly2
    MPD:2B:221 72,101
    2399 7rqb:1A
    (2.45Å)

    2872 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00001698E8 RF02540
    RF02541
    RF00002
    Thermus
    thermophilus
    HB8

    300852
    35165455 Assembly1
    MPD:1A:4014 422~424
    2400 7rqb:1B
    (2.45Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8

    300852
    35165455 Assembly1
    ARG:1B:231 80~82,94
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.