SEQ2FUN

FURNA
Download all results in tab-seperated text for 3651 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
  • Hover over PDB to view the title of the structure.
  • Hover over Rfam to view names of Rfam families.
  • Hover over PubMed to view title of the PubMed publications.
  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    3601 9v51:A
    (3.23Å)
    		 71 GO:0009113 (P) purine nucleobase biosy... N/A RF00167 Staphylococcus
    aureus
    1280    		 40966503 Assembly1
    H4B:A:101 8~9,38~39,64~65
    3602 9v7n:B
    (3.11Å)
    		 205 GO:0000372 (P) Group I intron splicing N/A RF00028 Azoarcus
    olearius
    418699    		 N/A Assembly1
    GMP:B:301 1,126~127,171~172
    3603 9v7o:B
    (3.06Å)
    		 205 GO:0000372 (P) Group I intron splicing N/A RF00028 Azoarcus
    olearius
    418699    		 N/A Assembly1
    GMP:B:301 126~127,129,171
    3604 9vma:G
    (3.46Å)
    		 163 N/A N/A N/A Escherichia
    coli
    562    		 40836036 Assembly1
    DTP:A:501 125~126
    3605 9vuo:B
    (2.19Å)
    		 14 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    A1ETT:A:101 13~14
    3606 9yd3:A
    (1.592Å)
    		 15 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    EQ4:B:101 1~2
    3607 9yd3:B
    (1.592Å)
    		 15 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    EQ4:A:101 1~2
    3608 9yd4:A
    (1.658Å)
    		 15 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    A1CWA:A:101 1~2
    3609 9yd4:B
    (1.658Å)
    		 15 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    A1CWA:B:101 1~2
    3610 9ypg:11
    (3.0Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 41350250
    1235

    1075    		 Assembly1
    ATP:11:101 3,72~73
    3611 9ypg:12
    (3.0Å)
    		 75 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Saccharomyces
    cerevisiae
    4932    		 41350250 Assembly1
    GTP:12:101 2,72~73
    3612 9ypg:13
    (3.0Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 41350250
    1235

    1075    		 Assembly1
    ATP:13:101 3,72~73
    3613 9ypg:5
    (3.0Å)
    		 3601 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02540
    RF02541
    RF02543    		 Oryctolagus
    cuniculus
    9986    		 41350250 Assembly1
    SPD:5:5101 39~40,91~93,4340
    MET:13:102 3909,4531
    3614 9ypo:11
    (3.0Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 41350250
    1235

    1075    		 Assembly1
    ATP:11:101 3,72~73
    3615 9ypo:12
    (3.0Å)
    		 75 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Saccharomyces
    cerevisiae
    4932    		 41350250 Assembly1
    GTP:12:101 2,72~73
    3616 9ypo:13
    (3.0Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 41350250
    1235

    1075    		 Assembly1
    ATP:13:101 3,72~73
    3617 9ypo:5
    (3.0Å)
    		 3601 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02540
    RF02541
    RF02543    		 Oryctolagus
    cuniculus
    9986    		 41350250 Assembly1
    SPD:5:5101 39~40,91~93
    3618 9yps:11
    (3.0Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 41350250
    1235

    1075    		 Assembly1
    ATP:11:101 3,72~73
    3619 9yps:12
    (3.0Å)
    		 75 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Saccharomyces
    cerevisiae
    4932    		 41350250 Assembly1
    GTP:12:101 2,72~73
    3620 9yps:13
    (3.0Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 41350250
    1235

    1075    		 Assembly1
    ATP:13:101 3,72~73
    3621 9yps:5
    (3.0Å)
    		 3601 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02540
    RF02541
    RF02543    		 Oryctolagus
    cuniculus
    9986    		 41350250 Assembly1
    SPD:5:5101 39~40,91~93,4340
    3622 9ypt:11
    (3.1Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 41350250
    1235

    1075    		 Assembly1
    ATP:11:101 3,72~73
    3623 9ypt:12
    (3.1Å)
    		 75 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Saccharomyces
    cerevisiae
    4932    		 41350250 Assembly1
    GTP:12:101 2,72~73
    3624 9ypt:13
    (3.1Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 41350250
    1235

    1075    		 Assembly1
    ATP:13:101 3,72~73
    3625 9ypt:5
    (3.1Å)
    		 3601 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02540
    RF02541
    RF02543    		 Oryctolagus
    cuniculus
    9986    		 41350250 Assembly1
    SPD:5:5101 39~40,91~93,4340
    MET:13:102 4397,4452,4531
    3626 9ypv:11
    (3.0Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 41350250
    1235

    1075    		 Assembly1
    ATP:11:101 3,72~73
    3627 9ypv:12
    (3.0Å)
    		 75 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Saccharomyces
    cerevisiae
    4932    		 41350250 Assembly1
    GTP:12:101 2,72~73
    3628 9ypv:13
    (3.0Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 41350250
    1235

    1075    		 Assembly1
    ATP:13:101 3,72~73
    3629 9ypv:5
    (3.0Å)
    		 3601 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02540
    RF02541
    RF02543    		 Oryctolagus
    cuniculus
    9986    		 41350250 Assembly1
    SPD:5:5101 39~40,91~93,4340
    3630 9ypw:11
    (2.9Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 41350250
    31588918
    1235

    1075    		 Assembly1
    ATP:11:101 3,73
    3631 9ypw:12
    (2.9Å)
    		 75 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Saccharomyces
    cerevisiae
    4932    		 41350250
    31588918    		 Assembly1
    GTP:12:101 2,72~73
    3632 9ypw:13
    (2.9Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 41350250
    31588918
    1235

    1075    		 Assembly1
    ATP:13:101 3,72~73
    3633 9ypw:5
    (2.9Å)
    		 3601 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02540
    RF02541
    RF02543    		 Oryctolagus
    cuniculus
    9986    		 41350250
    31588918    		 Assembly1
    SPD:5:5101 39~40,91~93
    3634 9ypy:11
    (3.0Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 41350250
    1235

    1075    		 Assembly1
    ATP:11:101 3,72~73
    3635 9ypy:12
    (3.0Å)
    		 75 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Saccharomyces
    cerevisiae
    4932    		 41350250 Assembly1
    GTP:12:101 2,72
    3636 9ypy:13
    (3.0Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 41350250
    1235

    1075    		 Assembly1
    ATP:13:101 3,73
    3637 9ypy:5
    (3.0Å)
    		 3601 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02540
    RF02541
    RF02543    		 Oryctolagus
    cuniculus
    9986    		 41350250 Assembly1
    SPD:5:5101 39~40,91~93,4340
    PHE:12:102 4397~4398,4531
    MET:13:102 3909,4531
    3638 9ypz:11
    (2.9Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 41350250
    1235

    1075    		 Assembly1
    ATP:11:101 3,72~73
    3639 9ypz:13
    (2.9Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 41350250
    1235

    1075    		 Assembly1
    ATP:13:101 3,72~73
    3640 9ypz:5
    (2.9Å)
    		 3601 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02540
    RF02541
    RF02543    		 Oryctolagus
    cuniculus
    9986    		 41350250 Assembly1
    SPD:5:8701 39~40,91~93,4340
    MET:13:102 3909,4452,4531
    3641 9yq0:11
    (2.9Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 41350250
    1235

    1075    		 Assembly1
    ATP:11:101 3,72~73
    3642 9yq0:13
    (2.9Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 41350250
    1235

    1075    		 Assembly1
    ATP:13:101 3,72~73
    3643 9yq0:5
    (2.9Å)
    		 3601 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02540
    RF02541
    RF02543    		 Oryctolagus
    cuniculus
    9986    		 41350250 Assembly1
    SPD:5:5101 39~40,91~93,4340
    MET:13:102 3909,4385,4531
    3644 9yq1:11
    (2.9Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 41350250
    1235

    1075    		 Assembly1
    ATP:11:101 3,72~73
    3645 9yq1:13
    (2.9Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 41350250
    1235

    1075    		 Assembly1
    ATP:13:101 3,72~73
    3646 9yq1:5
    (2.9Å)
    		 3601 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02540
    RF02541
    RF02543    		 Oryctolagus
    cuniculus
    9986    		 41350250 Assembly1
    SPD:5:5101 39~40,91~93,4340
    MET:13:102 4452,4531
    3647 9yrk:E
    (3.1Å)
    		 34 N/A N/A N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 41530153 Assembly1
    EIF:E:101 7,38
    3648 9yrl:C
    (2.9Å)
    		 32 N/A N/A N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 41530153 Assembly1
    EIF:C:101 7,38
    3649 9yrn:E
    (2.4Å)
    		 22 N/A N/A N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 41530153 Assembly1
    K5X:E:101 7,38
    3650 9yrn:K
    (2.4Å)
    		 22 N/A N/A N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 41530153 Assembly1
    K5X:K:101 7,38
    3651 9yro:E
    (2.55Å)
    		 16 N/A N/A N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 41530153 Assembly1
    K5X:E:101 7,38
    << < 27 28 29 30 31 32 33 34 35 36 37 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.