SEQ2FUN

FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    10801 7z20:b
    (2.29Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000311517 RF02541 Escherichia
    coli
    562    		 35869078 Assembly1
    rna:a:2~119 860~863,914,916~918,957
    rna:v:1~76 1906~1908,1922,2063,2250~2252,
    2449~2450,2601
    10802 7z20:v
    (2.29Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001DEEBE RF00005 Escherichia
    coli
    562    		 35869078 Assembly1
    rna:b:1~2901 11~12,24,74~76
    10803 7z34:1
    (3.8Å)
    		 3347 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 36097293 Assembly1
    rna:2:1~121 998,1051~1052,1055,1171,1197,1
    202~1204
    rna:3:1~157 3~13,15~24,59,143,330~337,339~
    343,345~346,349,351,368~369,40
    4~419,656,691,1395,1399,1419~1
    420,1441,1530,1584,1618~1619,1
    830~1832,2387,2585,2994~2995
    10804 7z34:2
    (3.8Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 36097293 Assembly1
    rna:1:3~3396 81,86,90,102~104
    10805 7z34:3
    (3.8Å)
    		 157 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 36097293 Assembly1
    rna:1:3~3396 1,4~13,15~22,24~33,35~37,40,53
    ,109,113~115,125~126,138~157
    10806 7z3n:1
    (3.2Å)
    		 3191 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000051B013 RF02543 Thermochaetoides
    thermophila
    DSM
    1495
    759272    		 37081320 Assembly1
    rna:2:1~1796 828,1915,2088,2170,2218~2219,2
    222,2225~2226,2253~2254,2265~2
    266
    rna:3:1~119 978~979,983,1035,1037~1038,115
    4,1180,1186
    rna:4:1~156 3~4,6~24,60,322~330,332~335,33
    8,342,344,361~362,398~409,411~
    412,644,679,1382,1403,1513,159
    8~1599,1811,2349,2544,2953~295
    4
    10807 7z3n:2
    (3.2Å)
    		 1772 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00026813EF RF01960
    RF02542
    RF01959
    RF00177    		 Thermochaetoides
    thermophila
    DSM
    1495
    759272    		 37081320 Assembly1
    rna:1:3~3337 625~626,911,1640~1641,1651,165
    3,1663,1742~1743,1751~1754,177
    6
    10808 7z3n:3
    (3.2Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00006BED5F RF00001 Thermochaetoides
    thermophila
    DSM
    1495
    759272    		 37081320 Assembly1
    rna:1:3~3337 78~80,85,89,101~102,104
    10809 7z3n:4
    (3.2Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000029C274 RF00002 Thermochaetoides
    thermophila
    DSM
    1495
    759272    		 37081320 Assembly1
    rna:1:3~3337 1,3~5,7~22,24~33,35~37,40,53~5
    4,104,114~115,126,129,137,140~
    156
    10810 7z3o:1
    (3.3Å)
    		 3191 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000051B013 RF02543 Thermochaetoides
    thermophila
    DSM
    1495
    759272    		 37081320 Assembly1
    rna:2:1~1796 828,1915,2088,2170,2218~2219,2
    222,2225~2226,2253~2255,2265~2
    266
    rna:3:1~119 978~979,983,1037~1038,1154,118
    0,1186
    rna:4:1~156 3~4,6~24,60,322~330,332~335,33
    8,342,344,361~362,398~401,403~
    408,411~412,644,679,1377~1378,
    1382,1403,1513,1565,1598,1811,
    2349,2544,2953~2954
    10811 7z3o:2
    (3.3Å)
    		 1765 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00026813EF RF01960
    RF02542
    RF01959
    RF00177    		 Thermochaetoides
    thermophila
    DSM
    1495
    759272    		 37081320 Assembly1
    rna:1:3~3337 625~626,911,1640~1641,1651~165
    3,1663,1742~1743,1751~1754,177
    6
    10812 7z3o:3
    (3.3Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00006BED5F RF00001 Thermochaetoides
    thermophila
    DSM
    1495
    759272    		 37081320 Assembly1
    rna:1:3~3337 78~80,85,89,102,104
    10813 7z3o:4
    (3.3Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000029C274 RF00002 Thermochaetoides
    thermophila
    DSM
    1495
    759272    		 37081320 Assembly1
    rna:1:3~3337 1,3~5,8~13,15~22,24~33,35~37,4
    0,54,104,114~115,126,140~156
    10814 7z43:RRR
    (3.123Å)
    		 18 N/A URS000080E01C N/A Influenza
    B
    virus
    11520    		 35605026 Assembly1
    rna:VVV:1~14 4,6~10
    10815 7z43:VVV
    (3.123Å)
    		 14 N/A URS000080E200 N/A Influenza
    B
    virus
    11520    		 35605026 Assembly1
    rna:RRR:1~18 11~14
    10816 7zag:2
    (2.77Å)
    		 1497 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023359D6 RF01959
    RF00177
    RF01960
    RF02542    		 Pyrococcus
    abyssi
    GE5
    272844    		 35694843 Assembly1
    rna:5:4~25 496,660,897,1374,1467,1501~150
    9
    rna:4:1~76 757,938,1203~1204,1312~1314,13
    74
    10817 7zag:4
    (2.77Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000B21E07 RF00005 Pyrococcus
    abyssi
    GE5
    272844    		 35694843 Assembly1
    rna:2:13~1509 30~31,34,38,40~41
    rna:5:4~25 34~37
    10818 7zag:5
    (2.77Å)
    		 22 N/A N/A N/A Pyrococcus
    abyssi
    GE5
    272844    		 35694843 Assembly1
    rna:2:13~1509 4~13,15,17~20,25
    rna:4:1~76 18,20
    10819 7zah:2
    (2.7Å)
    		 1497 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023359D6 RF01959
    RF00177
    RF01960
    RF02542    		 Pyrococcus
    abyssi
    GE5
    272844    		 35694843 Assembly1
    rna:5:4~25 496,660,897,1019,1374,1467,150
    2~1509
    rna:4:1~76 757,938,1203,1312~1314,1374
    10820 7zah:4
    (2.7Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000B21E07 RF00005 Pyrococcus
    abyssi
    GE5
    272844    		 35694843 Assembly1
    rna:2:13~1509 30~32,34,40~41
    rna:5:4~25 34~36
    10821 7zah:5
    (2.7Å)
    		 22 N/A N/A N/A Pyrococcus
    abyssi
    GE5
    272844    		 35694843 Assembly1
    rna:2:13~1509 4~12,15,18~20,24~25
    rna:4:1~76 18~20
    10822 7zai:2
    (2.6Å)
    		 1497 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023359D6 RF00177
    RF01959
    RF01960    		 Pyrococcus
    abyssi
    GE5
    272844    		 35694843 Assembly1
    rna:5:4~25 496,660,897,1019,1374,1467,150
    1~1509
    rna:4:1~76 757,938,1203~1204,1312~1314,13
    74
    10823 7zai:4
    (2.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000B21E07 RF00005 Pyrococcus
    abyssi
    GE5
    272844    		 35694843 Assembly1
    rna:2:13~1509 30~31,34,38,40~41
    rna:5:4~25 34~37
    10824 7zai:5
    (2.6Å)
    		 22 N/A N/A N/A Pyrococcus
    abyssi
    GE5
    272844    		 35694843 Assembly1
    rna:2:13~1509 4~12,15,18~20,24~25
    rna:4:1~76 18~20
    10825 7zhg:2
    (2.25Å)
    		 1497 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023359D6 RF00177
    RF01959
    RF01960    		 Pyrococcus
    abyssi
    GE5
    272844    		 35694843 Assembly1
    rna:5:4~20 660,897,1374,1467,1472,1501~15
    09
    rna:4:26~44 757,938,1203~1204,1312~1314,13
    74
    10826 7zhg:4
    (2.25Å)
    		 19 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000B21E07 RF00005 Pyrococcus
    abyssi
    GE5
    272844    		 35694843 Assembly1
    rna:2:13~1509 30~32,34,38,40~41
    rna:5:4~20 34~37
    10827 7zhg:5
    (2.25Å)
    		 17 N/A N/A N/A Pyrococcus
    abyssi
    GE5
    272844    		 35694843 Assembly1
    rna:2:13~1509 4~13,15,18~20
    rna:4:26~44 18~20
    10828 7zjw:F
    (2.8Å)
    		 90 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000014E598 RF01852 Homo
    sapiens
    9606    		 35709277
    1285

    s70

    787

    757

    805    		 Assembly1
    rna:I:30~226 36~39
    rna:L5:1~4808 39~40,67
    rna:S2:1~1870 36~39
    10829 7zjw:I
    (2.8Å)
    		 183 GO:0043022 (F) ribosome binding URS0002617726 RF00458 Cricket
    paralysis
    virus
    12136    		 35709277 Assembly1
    rna:F:1~90 217~220
    rna:S2:1~1870 182~184,187,191~192,194~195,21
    4~216,218~220
    10830 7zjw:L5
    (2.8Å)
    		 3764 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002616B6F RF02543 Oryctolagus
    cuniculus
    9986    		 35709277 Assembly1
    rna:F:1~90 3492,4165
    rna:L7:2~120 1675~1677,1680,1731,1733~1734,
    1848,1875,1881
    rna:L8:1~156 1~22,58,146,339,342~348,350~35
    3,356~357,360,362,379~380,409,
    415~430,1248~1249,1277~1278,13
    15,2151~2152,2155,2175~2177,21
    98,2287,2315,2351,2386~2387,23
    89,2621~2622
    rna:S2:1~1870 1518~1519,2727~2728,3361,3427,
    3432,3444,3491~3495,3498~3499,
    3526~3528,3538~3540
    10831 7zjw:L7
    (2.8Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000231198C RF00001 Oryctolagus
    cuniculus
    9986    		 35709277 Assembly1
    rna:L5:1~4808 77~79,84,88,98,100~101,103
    10832 7zjw:L8
    (2.8Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119A4 RF00002
    RF02540    		 Oryctolagus
    cuniculus
    9986    		 35709277 Assembly1
    rna:L5:1~4808 4~22,24~37,40~41,53~54,103,108
    ,110,112~113,124~125,127,138~1
    49,151~156
    10833 7zjw:S
    (2.8Å)
    		 46 GO:0001514 (P) selenocysteine incorpor... URS0002616B65 RF00031 Rattus
    norvegicus
    10116    		 35709277 Assembly1
    rna:S2:1~1870 1128~1130,1143
    10834 7zjw:S2
    (2.8Å)
    		 1770 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002616B7D RF01960
    RF02542
    RF01959
    RF00177    		 Oryctolagus
    cuniculus
    9986    		 35709277 Assembly1
    rna:F:1~90 627,1332,1826
    rna:I:30~226 627,1059,1208,1249,1332,1524,1
    640~1642,1702~1703,1825~1826,1
    831
    rna:S:1110~1155 1295~1297,1307
    rna:L5:1~4808 678~679,971,1029~1030,1053,118
    1,1709~1711,1720~1722,1732,181
    6~1817,1826~1829,1850
    10835 7zjx:I
    (3.1Å)
    		 163 GO:0043022 (F) ribosome binding URS0002616B80 RF00458 Cricket
    paralysis
    virus
    12136    		 35709277 Assembly1
    rna:S2:1~1870 219~221
    10836 7zjx:L5
    (3.1Å)
    		 3732 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002616B6F RF02543 Oryctolagus
    cuniculus
    9986    		 35709277 Assembly1
    rna:L7:1~120 1675~1677,1680,1731,1733~1735,
    1848,1875,1881
    rna:L8:1~156 1~22,58,146,193,339,341~348,35
    0~353,356~357,360,362,379~380,
    415~430,1248~1249,1277~1278,13
    15,2151~2152,2155,2176~2177,21
    98,2287~2288,2315,2330~2331,23
    36,2351,2386~2389,2621~2623,36
    22~3623
    rna:S2:1~1870 1518~1520,2727~2728,3361,3427,
    3432,3444,3491~3492,3494~3495,
    3498~3499,3526~3528,3538~3540
    10837 7zjx:L7
    (3.1Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 35709277 Assembly1
    rna:L5:1~4808 77~80,84,88,98,100~101,103
    10838 7zjx:L8
    (3.1Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119A4 RF00002
    RF02540    		 Oryctolagus
    cuniculus
    9986    		 35709277 Assembly1
    rna:L5:1~4808 3~22,24~37,40,53~54,68,103,108
    ,110~113,115,123~127,136,138~1
    49,151~156
    10839 7zjx:S
    (3.1Å)
    		 46 GO:0001514 (P) selenocysteine incorpor... URS0002616B65 RF00031 Rattus
    norvegicus
    10116    		 35709277 Assembly1
    rna:S2:1~1870 1129~1130,1143
    10840 7zjx:S2
    (3.1Å)
    		 1770 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002616B7D RF01960
    RF02542
    RF01959
    RF00177    		 Oryctolagus
    cuniculus
    9986    		 35709277 Assembly1
    rna:I:30~222 1332,1699,1826
    rna:L5:1~4808 678~679,971,1029~1031,1053,118
    1,1709~1711,1720~1722,1732,181
    6~1817,1825,1827~1829,1850
    rna:S:1110~1155 1295~1296,1307
    10841 7zlq:C
    (2.8Å)
    		 13 N/A URS00029156DB N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:C-2:1~13 1~11
    10842 7zlq:D
    (2.8Å)
    		 13 N/A URS00029156DB N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:E:1~13 1~5,7~11
    10843 7zlq:E
    (2.8Å)
    		 13 N/A URS00029156DB N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:D:1~13 1~5,7~11
    10844 7zod:a
    (2.56Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 35869078 Assembly1
    rna:b:1~2901 41,78~81,88~89,96~97,99~100
    10845 7zod:b
    (2.56Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000311517 RF02541 Escherichia
    coli
    562    		 35869078 Assembly1
    rna:a:2~119 861~863,915,917~919,958,2340
    rna:v:1~76 1850~1852,1891~1893,2112~2114,
    2180,2432
    10846 7zod:v
    (2.56Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001DEEBE RF00005 Escherichia
    coli
    562    		 35869078 Assembly1
    rna:b:1~2901 2~4,18~20,20A,57,70~72,76
    10847 7zp8:a
    (2.2Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 35869078 Assembly1
    rna:b:1~2901 78~81,88~89,96~97,99~100
    10848 7zp8:b
    (2.2Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000311517 RF02541 Escherichia
    coli
    562    		 35869078 Assembly1
    rna:a:2~119 861~863,915,917~919,958~959
    rna:v:1~76 1908~1909,1922~1923,2064,2251~
    2253,2255,2450~2451,2602
    10849 7zp8:v
    (2.2Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001DEEBE RF00005 Escherichia
    coli
    562    		 35869078 Assembly1
    rna:b:1~2901 3,12~13,24~25,74~76
    10850 7zpq:2
    (3.47Å)
    		 1771 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0001A16A88 RF01960
    RF02542
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 36801861
    101

    441

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:5:3~3396 628~630,913,970~973,995,1123,1
    644~1646,1655~1657,1667,1746~1
    747,1755~1759,1780
    rna:6:1~76 1001,1191,1462,1575~1577,1637
    10851 7zpq:3
    (3.47Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 36801861
    441    		 Assembly1
    rna:5:3~3396 1,3~22,24~33,35~37,40~41,53~54
    ,104,109,112~115,126,129,136,1
    38~155,157
    10852 7zpq:4
    (3.47Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 36801861 Assembly1
    rna:5:3~3396 79~82,86,90,100,102~103
    10853 7zpq:5
    (3.47Å)
    		 3184 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    4932    		 36801861
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:2:1~1799 846~848,1935~1936,2125,2191,21
    95~2196,2207,2255~2259,2262~22
    63,2290~2292,2302~2304
    rna:3:1~158 3~23,59,330~337,339~342,345~34
    6,349,351,368~369,404~419,656~
    657,691,1394~1395,1398~1399,14
    18~1420,1441,1530,1558,1584,16
    18~1619,1830~1832,2386,2585,29
    94~2995
    rna:4:1~121 996~998,1052~1056,1156,1171,11
    97,1203
    rna:6:1~76 2266,2619~2621,2819~2820,2971
    10854 7zpq:6
    (3.47Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00023119BF RF00005 Saccharomyces
    cerevisiae
    4932    		 36801861 Assembly1
    rna:2:1~1799 30~32,34,38,40~41
    rna:5:3~3396 12,74~76
    10855 7zq5:a
    (2.7Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 35869078 Assembly1
    rna:b:1~2901 78~80,89~90,96~97,99~100
    10856 7zq5:b
    (2.7Å)
    		 2900 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000311517 RF02541 Escherichia
    coli
    562    		 35869078 Assembly1
    rna:a:2~119 861~863,915,917~918,958
    10857 7zq6:M
    (2.75Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001ACE3E RF00005 Escherichia
    coli
    562    		 35869078 Assembly1
    rna:b:1~2901 3,12~13,24~25,74~76
    10858 7zq6:a
    (2.75Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 35869078 Assembly1
    rna:b:1~2901 41,78~81,89,96~97,99~100
    10859 7zq6:b
    (2.75Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000311517 RF02541 Escherichia
    coli
    562    		 35869078 Assembly1
    rna:a:2~119 861~863,915,917~919,958,2340
    rna:M:1~76 1907~1909,1922~1924,2063~2064,
    2251~2253,2255,2450~2451,2601~
    2602
    10860 7zrs:2
    (4.8Å)
    		 1771 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0001A16A88 RF01960
    RF02542
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 36801861
    101

    441

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:5:3~3397 628~629,913,971~973,994~995,11
    23,1644~1646,1655~1657,1667,17
    46~1747,1755~1759,1780
    rna:6:1~75 1000,1191,1462~1463,1575~1577
    10861 7zrs:3
    (4.8Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 36801861
    441    		 Assembly1
    rna:5:3~3397 1,3~22,24~37,40,53~54,104,109,
    113~115,125~126,129,137~157
    10862 7zrs:4
    (4.8Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 36801861 Assembly1
    rna:5:3~3397 79~82,86,90,100,102~103
    10863 7zrs:5
    (4.8Å)
    		 3185 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    4932    		 36801861
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:2:1~1799 847~849,1936,2126,2192,2196~21
    97,2208,2256~2260,2263~2264,22
    91~2293,2303~2305
    rna:3:1~158 3~23,59,330~337,339~342,345~34
    6,349,351,368~369,404~419,657~
    658,692,1395~1396,1399~1400,14
    19~1421,1442~1443,1531,1619~16
    20,1831~1833,2387,2586,2995~29
    96
    rna:4:1~121 997~999,1053,1055~1057,1157,11
    72,1198,1204
    rna:6:1~75 2210,2212,2236~2237,2765~2766,
    2794~2795
    10864 7zrs:6
    (4.8Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000E60BA3 RF00005 Saccharomyces
    cerevisiae
    4932    		 36801861 Assembly1
    rna:2:1~1799 30~31,34,37~38,40~41
    rna:5:3~3397 3,5,69~70,74~75
    10865 7zs5:1
    (3.2Å)
    		 3248 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    4932    		 36801861
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:3:1~121 996~999,1052,1054~1056,1156,11
    70~1171,1197,1203
    rna:4:1~158 3~12,14~23,59,143,330~337,339~
    342,345~346,349,351,368~369,39
    8,404~419,656~657,691,1394~139
    5,1398~1399,1419~1420,1529~153
    0,1584~1585,1618~1620,1830~183
    2,2386~2387,2585,2994~2995
    rna:2:1~76 2405~2406,2619~2621,2678,2820,
    2954,2971
    10866 7zs5:2
    (3.2Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00023119BF RF00005 Saccharomyces
    cerevisiae
    4932    		 36801861 Assembly1
    rna:1:3~3396 56,74~76
    10867 7zs5:3
    (3.2Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 36801861 Assembly1
    rna:1:3~3396 79~82,86,90,100,102~104
    10868 7zs5:4
    (3.2Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 36801861
    441    		 Assembly1
    rna:1:3~3396 1~22,24~37,40,52~54,104,106,10
    9~110,112~115,125~126,129,137~
    152,154~157
    10869 7zta:05S1
    (2.7Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    K-12
    83333    		 37322159 Assembly1
    rna:23S1:1~2903 78~80,89,96~97,99~100
    10870 7zta:16S1
    (2.7Å)
    		 1534 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177
    RF01959
    RF02542
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 37322159 Assembly1
    rna:23S1:1~2903 702,784,899,1407~1409,1418,142
    9,1473~1474,1483~1484,1493~149
    6,1517
    rna:ATR1:1~91 530~531,1054,1493
    rna:PTR1:1~76 790,966,1229~1230,1339~1340,14
    00
    rna:ETR1:1~94 694,1382~1383
    rna:MRN1:1~14 530,693,926,1196,1400~1402,149
    2~1493,1498
    10871 7zta:23S1
    (2.7Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02541 Escherichia
    coli
    K-12
    83333    		 37322159 Assembly1
    rna:16S1:1~1534 1700,1702~1704,1837,1846,1848,
    1912~1916,1919~1920,1947~1949,
    1959~1961
    rna:05S1:1~120 861~863,915,917~918,958
    rna:ATR1:1~91 896,1913,2469~2470,2482
    rna:PTR1:1~76 1907~1908,1923,2063,2251~2253,
    2439,2585,2602
    rna:ETR1:1~94 1851~1852,1893
    10872 7zta:ATR1
    (2.7Å)
    		 68 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000003E908 N/A Escherichia
    coli
    K-12
    83333    		 37322159 Assembly1
    rna:16S1:1~1534 31~34
    rna:23S1:1~2903 18,34~35,48~49,81
    rna:MRN1:1~14 31~34
    10873 7zta:ETR1
    (2.7Å)
    		 68 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00004FF598 RF00005 Escherichia
    coli
    K-12
    83333    		 37322159 Assembly1
    rna:16S1:1~1534 33,37~38
    rna:23S1:1~2903 2~4,92~93
    rna:MRN1:1~14 33~36
    10874 7zta:MRN1
    (2.7Å)
    		 14 N/A N/A N/A Escherichia
    coli
    K-12
    83333    		 37322159 Assembly1
    rna:16S1:1~1534 1,4~9,11
    rna:ATR1:1~91 7~10
    rna:PTR1:1~76 3~6
    rna:ETR1:1~94 1~3
    10875 7zta:PTR1
    (2.7Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000042DDAB RF00005 Escherichia
    coli
    K-12
    83333    		 37322159 Assembly1
    rna:16S1:1~1534 30~32,34,38~41
    rna:23S1:1~2903 12~13,24,73~76
    rna:MRN1:1~14 34~37
    10876 7zuw:2
    (4.3Å)
    		 1771 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2C2D RF01960
    RF02542
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 36801861
    101

    441

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:5:3~3397 628~630,913,970~973,994~995,11
    23,1644~1645,1655~1657,1667,17
    46~1747,1755~1759,1780
    rna:6:1~76 1001,1191,1462,1576~1577
    10877 7zuw:3
    (4.3Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 36801861
    441    		 Assembly1
    rna:5:3~3397 1,3~22,24~33,35~37,40~41,53,10
    4,109,113~115,118,125~126,129,
    136,138~155,157
    10878 7zuw:4
    (4.3Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 36801861 Assembly1
    rna:5:3~3397 79~81,86,90,100,102~104
    10879 7zuw:5
    (4.3Å)
    		 3163 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    4932    		 36801861
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:2:1~1799 847~849,1936~1937,2126,2192,21
    96~2197,2208,2256~2257,2260,22
    63~2264,2291~2293,2303~2304
    rna:3:1~158 3~23,59,330~337,339~342,345~34
    6,349,351,368~369,404~419,657~
    658,692,1395~1396,1400,1420,14
    42,1531,1585,1619,1831~1833,23
    87,2586,2995~2996
    rna:4:1~121 997~1000,1053,1055~1056,1157,1
    172,1198,1204
    rna:6:1~76 2267,2620~2622,2820~2821,2972
    10880 7zuw:6
    (4.3Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00023119BF RF00005 Saccharomyces
    cerevisiae
    4932    		 36801861 Assembly1
    rna:2:1~1799 30~31,34,38~41
    rna:5:3~3397 12,74~76
    10881 7zux:2
    (2.5Å)
    		 1769 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2C2D RF01960
    RF02542
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 36801861
    101

    441

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:5:3~3397 628~629,969,971~973,1644~1646,
    1655~1657,1746~1748,1756~1759,
    1780
    rna:6:1~76 1274,1756
    rna:7:1~77 1001,1191,1462~1463,1575~1577,
    1637
    10882 7zux:3
    (2.5Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 36801861
    441    		 Assembly1
    rna:5:3~3397 1~22,24~33,35~37,40~41,53~54,1
    04,109~110,113~115,126,129,136
    ~157
    10883 7zux:4
    (2.5Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 36801861 Assembly1
    rna:5:3~3397 79~82,86,90,100,102~103
    10884 7zux:5
    (2.5Å)
    		 3163 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    4932    		 36801861
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:2:1~1799 847~849,2126,2256~2260,2263~22
    64,2291,2303~2305
    rna:3:1~158 3~12,14~23,59,143,330~337,339~
    342,345~346,349,351,368~369,40
    4~419,657~658,692,1395~1396,13
    99~1400,1420~1421,1442,1531,15
    59,1586,1619~1620,1831~1833,23
    87,2586,2995~2996
    rna:4:1~121 997~999,1053,1055~1057,1157,11
    72,1198,1204
    rna:6:1~76 2257,2620~2622,2679,2820~2821,
    2972
    rna:7:1~77 2212,2236~2237,2765,2794~2795
    10885 7zux:6
    (2.5Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00008FED3A RF00005 Saccharomyces
    cerevisiae
    4932    		 36801861 Assembly1
    rna:2:1~1799 34~37
    rna:5:3~3397 37~38,56~57,74~76
    10886 7zux:7
    (2.5Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Saccharomyces
    cerevisiae
    4932    		 36801861 Assembly1
    rna:2:1~1799 31~33,35,39,41~43
    rna:5:3~3397 71~72,77
    10887 7zw0:2
    (2.4Å)
    		 1765 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2C2D RF01960
    RF02542
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    W303
    580240    		 36113412 Assembly1
    rna:LA:3~3396 973~974,1644~1646,1655~1657,17
    46~1747,1757~1759,1780
    rna:sm:5~33 10,904,1150,1634,1637~1638,175
    5~1756,1761
    rna:sl:1~76 577,1274,1756
    rna:sn:1~76 1001,1191,1462,1575~1577,1637
    10888 7zw0:LA
    (2.4Å)
    		 3217 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    W303
    580240    		 36113412 Assembly1
    rna:2:1~1799 846~848,2125,2255~2259,2262~22
    63,2290~2292,2302~2304
    rna:sl:1~76 2256,2619~2621,2678,2819~2820,
    2971
    rna:sn:1~76 2209,2211,2235~2236,2454,2484,
    2764~2765,2793~2794
    rna:LC:1~121 996~998,1052,1054~1056,1156,11
    71,1197,1203
    rna:LD:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1398~139
    9,1418~1420,1441,1530,1618~161
    9,1830~1832,2386~2387,2585,299
    4~2995
    10889 7zw0:LC
    (2.4Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    W303
    580240    		 36113412 Assembly1
    rna:LA:3~3396 79~82,86,90,100,102~103
    10890 7zw0:LD
    (2.4Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    W303
    580240    		 36113412 Assembly1
    rna:LA:3~3396 1~13,15~22,24~33,35~37,40~41,5
    3~54,104,109,113~115,125~126,1
    29,137~157
    10891 7zw0:sl
    (2.4Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000EEAD03 RF00005 Saccharomyces
    cerevisiae
    W303
    580240    		 36113412 Assembly1
    rna:LA:3~3396 18,37~38,56,74~76
    rna:2:1~1799 34~37
    rna:sm:5~33 34~37
    10892 7zw0:sm
    (2.4Å)
    		 29 N/A N/A N/A Saccharomyces
    cerevisiae
    W303
    580240    		 36113412 Assembly1
    rna:2:1~1799 13,15~20,23~24
    rna:sl:1~76 19~22
    rna:sn:1~76 16~18
    10893 7zw0:sn
    (2.4Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000EEAD03 RF00005 Saccharomyces
    cerevisiae
    W303
    580240    		 36113412 Assembly1
    rna:LA:3~3396 3,5,18,56,70~71,75~76
    rna:2:1~1799 30~32,34,38,40~41
    rna:sm:5~33 34~37
    10894 8a22:A1
    (2.91Å)
    		 109 N/A URS000261776F N/A Polytomella
    magna
    353565    		 36253367 Assembly1
    rna:A2:1~81 10,40~41
    rna:A3:1~210 25~28
    rna:A6:1~132 5,12,41~42
    10895 8a22:A2
    (2.91Å)
    		 81 N/A URS000261777F N/A Polytomella
    magna
    353565    		 36253367 Assembly1
    rna:A1:1~109 34~35,37
    rna:A3:1~210 20,40~54
    rna:A4:1~73 22~24
    rna:A6:1~132 18~19,31~40
    rna:A7:1~576 1~2,16~17,24~28,32~33
    rna:A8:1~350 24,29~31
    10896 8a22:A3
    (2.91Å)
    		 207 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002617776 RF02541 Polytomella
    magna
    353565    		 36253367 Assembly1
    rna:A1:1~109 26~27,136,143~144
    rna:A2:1~81 1~11,14~15,157~158
    rna:A4:1~73 167~170,180~181,184~187
    rna:A6:1~132 156~157,159~167
    rna:A7:1~576 20~21,31~32,77~78,86,88,91,97~
    98,100~102,106~108,112,129,131
    ,134,138,140,152~153,155,172,1
    75~177,182~183
    rna:A8:1~350 19~20,94,132,140,154~155,173~1
    74,178
    10897 8a22:A4
    (2.91Å)
    		 73 N/A URS000261775F N/A Polytomella
    magna
    353565    		 36253367 Assembly1
    rna:A2:1~81 7~9,34,45
    rna:A3:1~210 1,3~6,8,34~35
    rna:A5:1~142 37~38,42,50,52~56,58~66,68~69,
    71~73
    rna:A6:1~132 3~4,35~36,52~53
    rna:A7:1~576 15~16,23,25~27,42~43
    rna:A8:1~350 7,19,21~22,24
    10898 8a22:A5
    (2.91Å)
    		 136 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002617788 RF02541
    RF02540    		 Polytomella
    magna
    353565    		 36253367 Assembly1
    rna:A4:1~73 100~102,109~124
    rna:A6:1~132 125~126
    rna:A7:1~576 95,97~99,101
    rna:A8:1~350 92~94,96
    10899 8a22:A6
    (2.91Å)
    		 109 N/A URS0002617775 N/A Polytomella
    magna
    353565    		 36253367 Assembly1
    rna:A1:1~109 19,39~40,42,54~56
    rna:A2:1~81 45,47~56
    rna:A3:1~210 3,5~13,44~45,48
    rna:A4:1~73 3~8
    rna:A5:1~142 1~3
    rna:A7:1~576 56~68,78~91,93~94,105~107,110~
    112
    10900 8a22:A7
    (2.91Å)
    		 534 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002617768 RF02541 Polytomella
    magna
    353565    		 36253367 Assembly1
    rna:A2:1~81 310~314,322~324,326,328~329,34
    8
    rna:A3:1~210 21~23,54,115~118,120~122,125,1
    29~130,274,353,361,363,365,444
    ~446,531
    rna:A4:1~73 320~321,323~324,329~330,448,46
    3,470~472
    rna:A5:1~142 317~320,331~332
    rna:A6:1~132 4~10,12,15,26~30,37~44,302~310
    rna:A8:1~350 46~48,57~59,64,67,123~124,127~
    128,231~232,245~246,248,259,29
    1~292,300,306,315~316,323~325,
    336~350,352~354,356~360,362~37
    1,441~444,448~449,456~457,480,
    532~533,563~565,567~576
    rna:A9:51~129 465~466
    rna:B4:2~349 81,95~96,205~208,212~213,240,2
    52~253
    << < 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.