SEQ2FUN

FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    11201 8c3a:AU
    (3.0Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000082EA4 RF00002 Candida
    albicans
    5476    		 N/A Assembly2
    rna:AS:3~3361 1~22,24~37,40,53~54,95,104,109
    ,112~115,117,125~126,129,136~1
    56
    11202 8c3a:B
    (3.0Å)
    		 1761 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000059AE3B RF01960
    RF02542
    RF01959
    RF00177    		 Candida
    albicans
    5476    		 N/A Assembly1
    rna:1:3~3361 626~627,898~899,956~958,979~98
    0,1108,1631~1633,1642~1644,165
    4,1733~1734,1742,1744~1746,176
    7
    11203 8c3a:CM
    (3.0Å)
    		 1765 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000059AE3B RF01960
    RF02542
    RF01959
    RF00177    		 Candida
    albicans
    5476    		 N/A Assembly2
    rna:AS:3~3361 626~627,898,956~958,979~980,11
    08,1631~1633,1642~1644,1654~16
    55,1733~1734,1742,1744~1746,17
    67
    11204 8c4u:H
    (3.36Å)
    		 20 N/A URS000268141C N/A Hantaan
    virus
    76-118
    11602    		 37221161 Assembly1
    rna:T:6~25 13~20
    11205 8c4u:T
    (3.36Å)
    		 18 N/A URS0002681417 N/A Hantaan
    virus
    76-118
    11602    		 37221161 Assembly1
    rna:H:1~20 7~13
    11206 8c4v:H
    (3.14Å)
    		 19 N/A URS000268141C N/A Hantaan
    virus
    76-118
    11602    		 37221161 Assembly1
    rna:V:6~14 13~20
    11207 8c4v:T
    (3.14Å)
    		 12 N/A URS0002681417 N/A Hantaan
    virus
    76-118
    11602    		 37221161 Assembly1
    rna:P:13~21 16~25
    11208 8c6j:2
    (2.8Å)
    		 142 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003EE995 RF00004 Homo
    sapiens
    9606    		 36867703
    1212

    1373

    M055_0.6

    M068_0.6

    504

    97

    78    		 Assembly1
    rna:6:1~97 1~12,16~17,19~22,25~28
    rna:I:1~193 32~38,40~44,46
    11209 8c6j:5
    (2.8Å)
    		 113 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS0000118C49 RF00020 Homo
    sapiens
    9606    		 36867703
    1213

    M150_0.6

    1263

    42

    1267

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390    		 Assembly1
    rna:6:1~97 42~43
    rna:E:-24~-1 40~44
    11210 8c6j:6
    (2.8Å)
    		 97 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000035C796 RF00026 Homo
    sapiens
    9606    		 36867703
    1334

    1124

    s59

    M021_0.6    		 Assembly1
    rna:2:1~184 47,49~56,80,82~83,87~97
    rna:5:3~115 67,69~70
    rna:E:-24~-1 71~72
    rna:I:1~193 29~45,53~54,73
    11211 8c6j:E
    (2.8Å)
    		 24 N/A URS0002681447 N/A Homo
    sapiens
    9606    		 36867703
    583    		 Assembly1
    rna:5:3~115 -5~-1
    rna:6:1~97 -2~-1
    11212 8c6j:I
    (2.8Å)
    		 84 N/A URS0002681437 N/A Homo
    sapiens
    9606    		 36867703
    605

    1129

    1101

    M156_0.6

    596

    1340

    1102

    1122

    1201

    332

    M077_0.6

    s100

    1095

    1368

    1093

    991

    175

    M227_0.6

    84

    749

    726

    775

    M043_0.6

    s65

    779

    1193

    772

    798

    428

    1039

    1018

    M149_0.6

    M075_0.6

    M012_0.6

    1015

    105

    1012

    1013

    1094

    410

    1096

    1097

    1159

    1158

    1242

    465

    609

    996

    611

    1098

    1135

    995

    109

    720

    s95

    725

    164

    M150_0.6

    100

    765

    161

    s0

    1069

    1284

    1287

    1286

    15

    1022

    1061

    1063

    1065

    s101

    M232_0.6

    1106

    1243

    1105

    353

    683

    1100

    721

    s67

    686

    1244

    1074

    1108    		 Assembly1
    rna:2:1~184 140~151,153,155,157
    rna:6:1~97 2~11,13~18,170~172
    11213 8c8x:A
    (3.93Å)
    		 2705 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    562    		 36797249 Assembly1
    rna:B:1~119 861~863,915,917~919,958
    11214 8c8x:B
    (3.93Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E133 RF00001 Escherichia
    coli
    562    		 36797249 Assembly1
    rna:A:1~2903 78~81,89,96~97,99~100
    11215 8c8y:A
    (3.03Å)
    		 2548 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    562    		 36797249 Assembly1
    rna:B:1~119 861~863,915~919
    11216 8c8y:B
    (3.03Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E133 RF00001 Escherichia
    coli
    562    		 36797249 Assembly1
    rna:A:1~2903 78~81,97,99~100
    11217 8c8z:A
    (3.12Å)
    		 2205 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    562    		 36797249 Assembly1
    rna:B:1~119 861~863,915,917~919
    11218 8c8z:B
    (3.12Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E133 RF00001 Escherichia
    coli
    562    		 36797249 Assembly1
    rna:A:1~2903 78~81,97,99~100
    11219 8c90:A
    (3.15Å)
    		 2100 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    562    		 36797249 Assembly1
    rna:B:1~119 861~863,915,917~918
    11220 8c90:B
    (3.15Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E133 RF00001 Escherichia
    coli
    562    		 36797249 Assembly1
    rna:A:1~2903 78~80,97,100
    11221 8c94:A
    (3.8Å)
    		 1668 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    562    		 36797249 Assembly1
    rna:B:1~119 862,915,918
    11222 8c94:B
    (3.8Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E133 RF00001 Escherichia
    coli
    562    		 36797249 Assembly1
    rna:A:1~2903 78,80,96~97,99~100
    11223 8c95:A
    (4.92Å)
    		 1220 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    562    		 36797249 Assembly1
    rna:B:1~119 861~862,917~918
    11224 8c95:B
    (4.92Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E133 RF00001 Escherichia
    coli
    562    		 36797249 Assembly1
    rna:A:1~2903 78~81,97,99
    11225 8cam:a
    (1.86Å)
    		 2690 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    rna:b:72~105 861~864,915,917~919,958
    11226 8cam:b
    (1.86Å)
    		 34 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    rna:a:1~2902 78~81,89~90,96~97,99~101
    11227 8cas:1
    (3.3Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002CB170 RF00005 Saccharomyces
    cerevisiae
    W303
    580240    		 37169754 Assembly1
    rna:3:26~33 34~37
    rna:2:1~1799 30~32,34,38,40~41
    11228 8cas:2
    (3.3Å)
    		 1763 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2C2D RF01960
    RF02542
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    W303
    580240    		 37169754 Assembly1
    rna:1:1~76 1001,1191,1462~1463,1575~1577,
    1637
    rna:3:26~33 1150,1637~1639,1761,1768
    11229 8ccs:AA
    (1.97Å)
    		 3190 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    4932    		 38030725
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:BB:1~121 996~999,1052~1056,1156,1171,11
    97,1203
    rna:Bb:1~76 1034,2256,2258,2875~2876,2922~
    2924,2952~2953
    rna:CC:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1398~139
    9,1418~1420,1441,1530,1558,158
    4~1585,1618~1619,1830~1832,238
    6~2387,2585,2994~2995
    rna:Cc:1~77 2454,2484,2764~2765,2793~2794
    rna:c:1~1799 846~848,2125,2206,2255~2259,22
    62~2263,2290~2292,2302~2304
    11230 8ccs:BB
    (1.97Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 38030725 Assembly1
    rna:AA:3~3396 79~82,86,90,100,102~104
    11231 8ccs:Bb
    (1.97Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 38030725 Assembly1
    rna:AA:3~3396 25,37~38,56,75~76
    rna:Dd:13~25 34~37
    rna:c:1~1799 34~37
    11232 8ccs:CC
    (1.97Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 38030725
    441    		 Assembly1
    rna:AA:3~3396 1~22,24~33,35~37,40~41,53~54,1
    04,109,112~115,125~126,129,136
    ~157
    11233 8ccs:Cc
    (1.97Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Escherichia
    coli
    562    		 38030725 Assembly1
    rna:AA:3~3396 20,57,76~77
    rna:Dd:13~25 35~38
    rna:c:1~1799 30~33,35,39~42
    11234 8ccs:Dd
    (1.97Å)
    		 13 N/A N/A N/A Saccharomyces
    cerevisiae
    4932    		 38030725 Assembly1
    rna:Bb:1~76 22~25
    rna:Cc:1~77 19~21
    rna:c:1~1799 14~16,18~23
    11235 8ccs:c
    (1.97Å)
    		 1604 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000268149C RF01960
    RF02542
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 38030725
    101

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:AA:3~3396 628,913,971~973,1644~1647,1655
    ~1657,1746~1747,1757~1759,1780
    rna:Bb:1~76 577~578,1274,1756
    rna:Cc:1~77 1001,1191,1462~1463,1575~1577,
    1637
    rna:Dd:13~25 904,1150,1637~1638,1755~1756,1
    761
    11236 8cd1:A
    (3.0Å)
    		 2883 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000197CF82 RF02541 Pseudomonas
    aeruginosa
    PAO1
    208964    		 38443577 Assembly1
    rna:B:1~120 850~853,904,906~908,948~949
    rna:Dt:1~76 1894~1895,1909~1910,2051,2238~
    2240,2437~2438,2589
    rna:a:2~1527 1679,1690~1694,1735,1818~1819,
    1824,1833,1835,1882,1900,1903,
    1905~1907,1909,1934~1936,1946~
    1948
    11237 8cd1:B
    (3.0Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005ACE34 RF00001 Pseudomonas
    aeruginosa
    PAO1
    208964    		 38443577 Assembly1
    rna:A:2~2889 78~81,89~90,97,99~100
    11238 8cd1:Dt
    (3.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Pseudomonas
    aeruginosa
    PAO1
    208964    		 38443577 Assembly1
    rna:A:2~2889 12,24~25,74~76
    rna:a:2~1527 29~31,34,38,40~41
    11239 8cd1:a
    (3.0Å)
    		 1526 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000197CF85 RF01959
    RF00177
    RF02542
    RF01960    		 Pseudomonas
    aeruginosa
    PAO1
    208964    		 38443577 Assembly1
    rna:A:2~2889 264,696,778,784~785,893~894,14
    01~1402,1412,1422~1424,1467~14
    69,1477~1478,1488~1490,1511
    rna:Dt:1~76 784,960,1223~1224,1332~1334,13
    94
    11240 8cdl:AA
    (2.72Å)
    		 3190 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    4932    		 38030725
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:BB:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1203
    rna:Bb:1~76 2256,2678,2876,2922,2952~2953
    rna:CC:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1399,141
    8~1420,1441,1530,1558,1584~158
    5,1618~1619,1830~1832,2386,258
    5,2994~2995
    rna:Cc:1~77 2454,2484,2764~2765,2793~2794
    rna:c:1~1799 846~848,2206,2255~2259,2262~22
    63,2290~2292,2302~2304
    11241 8cdl:BB
    (2.72Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 38030725 Assembly1
    rna:AA:3~3396 79~82,86,90,100,102~104
    11242 8cdl:Bb
    (2.72Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 38030725 Assembly1
    rna:AA:3~3396 37~38,56,75~76
    rna:Dd:13~26 34~37
    rna:c:1~1799 34~37
    11243 8cdl:CC
    (2.72Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 38030725
    441    		 Assembly1
    rna:AA:3~3396 1~22,24~37,40~41,53~54,104,109
    ,112~115,125~126,129,136~157
    11244 8cdl:Cc
    (2.72Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Escherichia
    coli
    562    		 38030725 Assembly1
    rna:AA:3~3396 20,57,76~77
    rna:Dd:13~26 35~38
    rna:c:1~1799 31~33,35,39~42
    11245 8cdl:Dd
    (2.72Å)
    		 14 N/A N/A N/A Saccharomyces
    cerevisiae
    4932    		 38030725 Assembly1
    rna:Bb:1~76 22~24
    rna:Cc:1~77 19~21
    rna:c:1~1799 14~16,18~24,26
    11246 8cdl:c
    (2.72Å)
    		 1604 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000268149C RF01960
    RF02542
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 38030725
    101

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:AA:3~3396 628,913,971~973,1644~1646,1655
    ~1657,1746~1748,1757~1759,1780
    rna:Bb:1~76 577,1274,1756
    rna:Cc:1~77 1001,1191,1462~1463,1575~1577,
    1637
    rna:Dd:13~26 577,904,1150,1634,1637~1638,17
    55~1756,1761
    11247 8cdr:AA
    (2.04Å)
    		 3197 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    4932    		 38030725
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:BB:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1203
    rna:Bb:1~76 2619~2621,2623,2819~2820,2971
    rna:CC:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1398~139
    9,1418~1420,1441~1442,1530,155
    8,1584~1585,1618~1619,1830~183
    2,2386~2387,2585,2994~2995
    rna:Cc:1~77 2210~2211,2235~2236,2453~2454,
    2484,2764~2765,2793~2794
    rna:c:1~1799 846~848,1919,1935,2125,2191,21
    95~2196,2208,2255,2257~2259,22
    62~2263,2290~2292,2302~2304
    11248 8cdr:BB
    (2.04Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 38030725 Assembly1
    rna:AA:3~3396 79~82,86,90,100,102~104
    11249 8cdr:Bb
    (2.04Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 38030725 Assembly1
    rna:AA:3~3396 3,74~76
    rna:Dd:19~24 34~37
    rna:c:1~1799 33~34,41
    11250 8cdr:CC
    (2.04Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 38030725
    441    		 Assembly1
    rna:AA:3~3396 1~22,24~33,35~37,40~41,53~54,1
    04,106,109~110,112~115,125~126
    ,129,136~157
    11251 8cdr:Cc
    (2.04Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Escherichia
    coli
    562    		 38030725 Assembly1
    rna:AA:3~3396 3~4,20,57,71~72,76~77
    rna:Dd:19~24 35~38
    rna:c:1~1799 30~33,35,41~42
    11252 8cdr:c
    (2.04Å)
    		 1608 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000268149C RF01960
    RF02542
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 38030725
    101

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:AA:3~3396 320,628~629,913,971~973,995,11
    23,1644~1647,1655~1657,1667,17
    46~1747,1757~1759,1780
    rna:Bb:1~76 1179,1190,1637
    rna:Cc:1~77 1191,1462~1463,1575~1577
    rna:Dd:19~24 1150,1637~1638,1640,1761,1768
    11253 8ceh:AA
    (2.05Å)
    		 3197 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    4932    		 38030725
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:BB:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1203
    rna:Bb:1~76 2619~2621,2623,2819~2820,2970~
    2971
    rna:CC:1~158 3~23,59,143,330~337,339~342,34
    4~346,349,351,368~369,398,404~
    419,656~657,691,1394~1395,1398
    ~1399,1418~1420,1441~1442,1530
    ,1558,1584~1585,1618~1619,1830
    ~1832,2386~2387,2585,2994~2995
    rna:Cc:1~77 2210~2211,2234~2236,2453~2454,
    2484,2496,2764~2765,2793~2794
    rna:c:1~1799 846~848,1935~1936,2124~2125,21
    91,2195~2196,2208,2255~2259,22
    62~2263,2290~2292,2302~2304
    11254 8ceh:BB
    (2.05Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 38030725 Assembly1
    rna:AA:3~3396 79~82,86,90,100,102~104
    11255 8ceh:Bb
    (2.05Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 38030725 Assembly1
    rna:AA:3~3396 2~3,74~76
    rna:Dd:19~24 34~37
    rna:c:1~1799 33~34
    11256 8ceh:CC
    (2.05Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 38030725
    441    		 Assembly1
    rna:AA:3~3396 1~22,24~33,35~37,40~41,53~54,1
    04,109,112~115,125~126,129,136
    ~157
    11257 8ceh:Cc
    (2.05Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Escherichia
    coli
    562    		 38030725 Assembly1
    rna:AA:3~3396 3~4,18,20,57,71~73,76~77
    rna:Dd:19~24 35~38
    rna:c:1~1799 31~33,35,41~42
    11258 8ceh:c
    (2.05Å)
    		 1608 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000268149C RF01960
    RF02542
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 38030725
    101

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:AA:3~3396 628~629,913,971~973,994~995,11
    23,1644~1646,1655~1657,1667,17
    46~1747,1756~1759,1780
    rna:Bb:1~76 1179,1190~1191,1637
    rna:Cc:1~77 1191,1462,1575~1577
    rna:Dd:19~24 904,1150,1637~1638,1640,1761
    11259 8cep:A
    (2.04Å)
    		 1046 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000268143B RF00177
    RF01959
    RF02542
    RF01960    		 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    rna:a:1905~1935 1407~1409,1493~1496,1517
    11260 8cep:a
    (2.04Å)
    		 31 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    rna:A:1~1534 1912~1916,1919~1920
    11261 8ceu:a
    (1.83Å)
    		 2753 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    rna:b:1~119 861~864,915,917~919,958,2339~2
    340
    11262 8ceu:b
    (1.83Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    rna:a:1~2903 41,78~81,89~90,96~97,99~100
    11263 8cf2:A

    		 11 N/A URS0000BC466C N/A synthetic
    construct
    32630    		 38554107 Assembly1
    rna:B:12~22 1~2,4~11
    11264 8cf2:B

    		 11 N/A URS0000BC4661 N/A synthetic
    construct
    32630    		 38554107 Assembly1
    rna:A:1~11 12~22
    11265 8cf5:AA
    (2.71Å)
    		 3190 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    4932    		 38030725
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:BB:1~121 996~999,1052~1056,1156,1171,11
    97,1203
    rna:Bb:1~76 2256,2678,2875~2876,2922~2924,
    2952~2954
    rna:CC:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1398~139
    9,1418~1420,1441,1530,1558,158
    4~1585,1618~1620,1830~1832,238
    6,2585,2994~2995
    rna:Cc:1~77 2454,2484,2764~2765,2793~2794
    rna:c:1~1799 846~848,2125,2255~2259,2262~22
    63,2290~2292,2302~2304
    11266 8cf5:BB
    (2.71Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 38030725 Assembly1
    rna:AA:3~3396 79~82,86,90,100,102~104
    11267 8cf5:Bb
    (2.71Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 38030725 Assembly1
    rna:AA:3~3396 37,56,75~76
    rna:Dd:13~25 34~37
    rna:c:1~1799 34~37
    11268 8cf5:CC
    (2.71Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 38030725
    441    		 Assembly1
    rna:AA:3~3396 1~22,24~37,40~41,53~54,104,106
    ,109~110,113~115,125~126,129,1
    36~157
    11269 8cf5:Cc
    (2.71Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Escherichia
    coli
    562    		 38030725 Assembly1
    rna:AA:3~3396 20,57,76~77
    rna:Dd:13~25 35~38
    rna:c:1~1799 30~33,35,39~42
    11270 8cf5:Dd
    (2.71Å)
    		 13 N/A N/A N/A Saccharomyces
    cerevisiae
    4932    		 38030725 Assembly1
    rna:Bb:1~76 22~24
    rna:Cc:1~77 19~21
    rna:c:1~1799 14~16,18~23
    11271 8cf5:c
    (2.71Å)
    		 1604 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000268149C RF01960
    RF02542
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 38030725
    101

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:AA:3~3396 628,971~973,1644~1646,1655~165
    7,1746~1748,1756~1759,1780
    rna:Bb:1~76 577~578,1274,1756
    rna:Cc:1~77 1001,1191,1462~1463,1575~1577,
    1637
    rna:Dd:13~25 904~905,1150,1637~1638,1640,17
    55~1756,1761
    11272 8cg8:AA
    (2.57Å)
    		 3197 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    4932    		 38030725
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:BB:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1203
    rna:Bb:1~76 2405~2406,2619~2620,2819~2820,
    2954,2971
    rna:CC:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,398,404~
    419,656~657,691,1394~1395,1398
    ~1399,1418~1420,1441~1442,1530
    ,1558,1584~1585,1618~1619,1830
    ~1832,2386,2585,2994~2995
    rna:Cc:1~77 2210~2211,2235~2236,2454,2484,
    2764~2765,2793~2794
    rna:c:1~1799 846~848,1935~1936,2125,2195~21
    96,2208,2255~2259,2262~2263,22
    90~2292,2302~2304,2330
    11273 8cg8:BB
    (2.57Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 38030725 Assembly1
    rna:AA:3~3396 79~82,86,90,100,102~104
    11274 8cg8:Bb
    (2.57Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 38030725 Assembly1
    rna:AA:3~3396 74~76
    rna:Dd:19~24 34~37
    rna:c:1~1799 33~34
    11275 8cg8:CC
    (2.57Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 38030725
    441    		 Assembly1
    rna:AA:3~3396 1~22,24~37,40~41,53~54,104,106
    ,109,112~115,125~126,129,136~1
    52,154~157
    11276 8cg8:Cc
    (2.57Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Escherichia
    coli
    562    		 38030725 Assembly1
    rna:AA:3~3396 3,20,57,71~72,76~77
    rna:Dd:19~24 35~38
    rna:c:1~1799 31~33,35,41~42
    11277 8cg8:c
    (2.57Å)
    		 1608 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000268149C RF01960
    RF02542
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 38030725
    101

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:AA:3~3396 628~629,913,971~973,994~995,11
    23,1644~1646,1655~1657,1667,17
    46~1747,1756~1758,1780
    rna:Bb:1~76 1190~1191,1637
    rna:Cc:1~77 1191,1462,1575~1578
    rna:Dd:19~24 1150,1637~1638,1640,1761
    11278 8cgd:a
    (1.98Å)
    		 2748 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    rna:b:1~119 861~864,915,917~919,958,2339~2
    340
    11279 8cgd:b
    (1.98Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    rna:a:1~2902 41,78~81,89~90,96~97,99~100
    11280 8cgj:A
    (1.79Å)
    		 1130 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000268143B RF00177
    RF01959
    RF02542
    RF01960    		 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    rna:a:1905~1935 1407~1409,1493~1496,1517
    11281 8cgj:a
    (1.79Å)
    		 31 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    rna:A:2~1534 1912~1916,1919~1920
    11282 8cgk:a
    (1.64Å)
    		 2699 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    rna:b:11~106 861~864,915,917~919,958
    11283 8cgk:b
    (1.64Å)
    		 39 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    rna:a:1~2902 78~81,89~90,96~97,99~100
    11284 8cgn:AA
    (2.28Å)
    		 3197 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    4932    		 38030725
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:BB:1~121 996~999,1052~1056,1156,1171,11
    97,1203
    rna:Bb:1~77 2250~2252,2265~2267,2619~2621,
    2623,2819~2820,2971
    rna:CC:1~158 3~23,59,143,330~337,339~342,34
    4~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1398~139
    9,1418~1420,1441~1442,1530,155
    8,1584~1585,1618~1619,1830~183
    2,2386,2585,2994~2995
    rna:Cc:1~77 2210~2211,2235~2236,2453~2454,
    2484,2764~2765,2793~2794
    rna:c:1~1799 846~848,1918~1919,1935~1936,21
    25,2191,2195~2196,2208,2255~22
    59,2262~2263,2290~2292,2302~23
    04
    11285 8cgn:BB
    (2.28Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 38030725 Assembly1
    rna:AA:3~3396 79~82,86,90,100,102~104
    11286 8cgn:Bb
    (2.28Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Escherichia
    coli
    562    		 38030725 Assembly1
    rna:AA:3~3396 2~3,11~13,25~26,75~77
    rna:Dd:16~21 35~38
    rna:c:1~1799 30~33,35,39~42
    11287 8cgn:CC
    (2.28Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 38030725
    441    		 Assembly1
    rna:AA:3~3396 1~22,24~33,35~37,40~41,53~54,1
    04,106,109,112~115,125~126,129
    ,136~157
    11288 8cgn:Cc
    (2.28Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Escherichia
    coli
    562    		 38030725 Assembly1
    rna:AA:3~3396 3~4,19~20,56~58,71~72,76~77
    11289 8cgn:c
    (2.28Å)
    		 1624 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000268149C RF01960
    RF02542
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 38030725
    101

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:AA:3~3396 320,628~629,913,971~973,994~99
    5,1123,1644~1646,1655~1657,166
    7,1746~1747,1755~1759,1780
    rna:Bb:1~77 1001,1191,1462~1463,1575~1577,
    1637
    rna:Dd:16~21 904,1150,1637~1638,1640,1761
    11290 8cgr:A
    (2.12Å)
    		 1060 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000268143B RF00177
    RF01959
    RF02542
    RF01960    		 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    rna:a:1906~1935 1407~1409,1493~1496,1517
    11291 8cgr:a
    (2.12Å)
    		 30 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    rna:A:1~1534 1912~1916,1919~1920
    11292 8cgu:A
    (1.89Å)
    		 1047 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000268143B RF00177
    RF01959
    RF02542
    RF01960    		 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    rna:a:1905~1935 1407~1409,1494~1496,1517
    11293 8cgu:a
    (1.89Å)
    		 31 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    rna:A:1~1534 1912,1914~1916,1919~1920
    11294 8cgv:a
    (1.66Å)
    		 2687 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    rna:b:8~109 861~863,915,917~919,958
    11295 8cgv:b
    (1.66Å)
    		 56 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    BW25113
    679895    		 37550453 Assembly1
    rna:a:1~2903 78~81,89~90,96~97,99~100
    11296 8ch6:d
    (5.9Å)
    		 93 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000035C796 RF00026 Homo
    sapiens
    9606    		 37165190
    1334

    1124

    s59

    M021_0.6    		 Assembly1
    rna:e:8~116 67,69~70
    rna:f:1~184 47,49~56,79~81,86~97
    rna:g:-14~164 29~45,71,73
    11297 8ch6:e
    (5.9Å)
    		 98 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000075BAAE RF00020 Homo
    sapiens
    9606    		 37165190
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390    		 Assembly1
    rna:d:1~97 42~43
    rna:g:-14~164 42~44
    11298 8ch6:f
    (5.9Å)
    		 137 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003EE995 RF00004 Homo
    sapiens
    9606    		 37165190
    1212

    1272

    1384

    1373

    M068_0.6

    504    		 Assembly1
    rna:d:1~97 1~15,19~22,25~29
    rna:g:-14~164 32~44
    11299 8ch6:g
    (5.9Å)
    		 76 N/A URS00026813FC N/A unidentified
    adenovirus
    10535    		 37165190 Assembly1
    rna:d:1~97 -2~-1,3~17
    rna:e:8~116 -5~-2
    rna:f:1~184 132~135,137~143,145~148
    11300 8civ:AA
    (2.47Å)
    		 3197 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    4932    		 38030725
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:BB:1~121 996~999,1052~1056,1156,1171,11
    97,1203
    rna:Bb:1~76 2253,2619~2621,2623,2819~2820,
    2971
    rna:CC:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,398,404~
    419,656~657,691,1394~1395,1398
    ~1399,1418~1420,1441,1530,1558
    ,1584~1585,1618~1619,1830~1832
    ,2386,2585,2994~2995
    rna:Cc:1~77 2210~2211,2234~2236,2454,2484,
    2764~2765,2793~2794
    rna:c:1~1799 846~848,1918,1935~1936,2125,21
    91,2195~2196,2208,2255~2259,22
    62~2263,2290~2292,2302~2304
    << < 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.