SEQ2FUN

FURNA
Download all results in tab-seperated text for 14210 RNAs.
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    # PDB
    (Resolution)
    Length EC number
    & GO term
    RNAcentral Rfam Taxon PubMed ATtRACT
    motif
    Ligand &
    binding nucleotides
    12601 8pt7:S
    (2.8Å)

    15 N/A URS000291567A N/A Tilapia
    lake
    virus

    1549864
    38066000 Assembly1
    rna:V:3~16 1~6,8~9
    12602 8pt7:V
    (2.8Å)

    14 N/A URS000291567A N/A Tilapia
    lake
    virus

    1549864
    38066000 Assembly1
    rna:S:1~15 10~16
    12603 8pth:D
    (2.73Å)

    14 N/A URS000291569A N/A Tilapia
    lake
    virus

    1549864
    38066000 Assembly1
    rna:V:3~15 26~30,33
    12604 8pth:V
    (2.73Å)

    13 N/A URS000291569A N/A Tilapia
    lake
    virus

    1549864
    38066000 Assembly1
    rna:D:26~40 11~15
    12605 8pv1:C1
    (2.56Å)

    3078 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00029156E5 RF02543 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C2:1~156 4~24,60,139,323~330,332~335,33
    8~339,342,344,361~362,397~412,
    644~645,679,1377~1378,1382,140
    1~1403,1424,1513,1541,1565,159
    9~1600,1810~1812,2349~2350,295
    3~2954
    12606 8pv1:C2
    (2.56Å)

    156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000029C274 RF00002 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C1:1~3338 1,3~22,24~33,35~37,40~41,53~54
    ,104,109,112~115,128,136~150,1
    52~156
    12607 8pv2:C1
    (2.63Å)

    3056 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00029156B2 RF02543 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C2:1~156 4~24,60,139,323~330,332~335,33
    8~339,342,344,361~362,397~412,
    644~645,679,1377~1378,1382,140
    1~1403,1424,1513,1541,1564~156
    5,1599~1600,1810~1812,2349~235
    0,2544,2953~2954
    12608 8pv2:C2
    (2.63Å)

    153 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000029C274 RF00002 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C1:4~3338 1~22,24~33,35~37,40~41,53~54,1
    04,109,112~115,128,136~156
    12609 8pv3:C1
    (2.8Å)

    2998 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00029156E5 RF02543 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C2:1~156 4~24,60,139,323~330,332~335,33
    8~339,342,344,361~362,397~412,
    644~645,679,1377~1378,1382,140
    1~1403,1424,1513,1541,1564~156
    5,1599,1810~1812,2349~2350,295
    3~2954
    12610 8pv3:C2
    (2.8Å)

    156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000029C274 RF00002 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C1:1~3338 1,3~22,24~33,35~37,40~41,53~54
    ,104,109,112~115,128,136~150,1
    52~156
    12611 8pv4:C1
    (2.9Å)

    3136 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00029156E5 RF02543 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C2:1~156 4~24,60,139,323~330,332~335,33
    8~339,342,344,361~362,397~412,
    644~645,679,1377~1378,1382,140
    1~1403,1424,1513,1541,1564~156
    5,1599~1600,1810~1812,2349~235
    0,2953~2954
    12612 8pv4:C2
    (2.9Å)

    156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000029C274 RF00002 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C1:1~3338 1~22,24~33,35~37,40~41,52~54,1
    04,109,112~115,128,136~150,152
    ~156
    12613 8pv5:C1
    (2.86Å)

    3060 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00029156E5 RF02543 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C2:1~156 4~24,60,139,323~330,332~336,33
    8~339,342,344,361~362,397~412,
    644~645,679,1377~1378,1381~138
    2,1401~1403,1424,1513,1541,156
    4~1565,1598~1599,1810~1812,234
    9~2350,2544,2953~2954
    12614 8pv5:C2
    (2.86Å)

    152 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000029C274 RF00002 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C1:4~3338 1,3~22,24~33,35~37,40~41,53~54
    ,104,109,112~115,126,129,136~1
    56
    12615 8pv6:C1
    (2.94Å)

    3100 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00029156E5 RF02543 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C2:1~156 4~24,60,139,323~330,332~335,33
    8~339,342,344,361~362,397~412,
    644~645,679,1377~1378,1381~138
    2,1401~1403,1424,1513,1541,156
    4~1565,1599~1600,1810~1812,234
    9~2350,2953~2954

    rna:C4:1~119 1154,1181,2803
    12616 8pv6:C2
    (2.94Å)

    156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000029C274 RF00002 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C1:1~3338 1~22,24~33,35~37,40~41,53~54,1
    04,109,112~115,128,136~150,152
    ~156
    12617 8pv6:C4
    (2.94Å)

    115 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0002617727 RF00001 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C1:1~3338 85,88,104
    12618 8pv7:C1
    (2.12Å)

    3078 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00029156E5 RF02543 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C2:1~156 4~24,60,139,323~330,332~335,33
    8~339,342,344,361~362,397~412,
    644~645,679,1377~1378,1382,140
    1~1403,1424,1513,1541,1564~156
    5,1599,1810~1812,2349~2350,295
    3~2954
    12619 8pv7:C2
    (2.12Å)

    156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000029C274 RF00002 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C1:1~3338 1~22,24~33,35~37,40,53~54,104,
    109,112~115,128,136~150,152~15
    6
    12620 8pv8:C1
    (2.91Å)

    3085 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00029156E5 RF02543 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C2:1~156 4~24,60,139,323~330,332~335,33
    8~339,342,344,361~362,397~412,
    644~645,679,1377~1378,1381~138
    2,1401~1403,1424,1513,1541,156
    4~1565,1598~1600,1810~1812,234
    9~2350,2544,2953~2954

    rna:C4:1~119 1154,1181,2803
    12621 8pv8:C2
    (2.91Å)

    150 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000029C274 RF00002 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C1:4~3338 1,3~22,24~33,35~37,40~41,53~54
    ,104,109~110,112~115,125~126,1
    29,136~156
    12622 8pv8:C4
    (2.91Å)

    115 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0002617727 RF00001 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C1:4~3338 85,88,104
    12623 8pva:A
    (4.5Å)

    1519 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00000ABFE9 RF00177
    RF01959
    RF02542
    RF01960
    Escherichia
    coli

    562
    38011573 Assembly1
    rna:a:1~2903 702,784,899,1407~1409,1418,142
    9,1473~1475,1483~1484,1494~149
    6,1517

    rna:X:13~24 693,926,1196,1397,1400~1402,14
    92~1493,1498

    rna:Y:1~76 530~531,1054,1493
    rna:Z:2~76 790,966,1229~1230,1338~1340,14
    00
    12624 8pva:X
    (4.5Å)

    12 N/A N/A N/A Escherichia
    coli

    562
    38011573 Assembly1
    rna:A:2~1534 13,15~20,23~24
    rna:Y:1~76 19~21
    rna:Z:2~76 16~18
    12625 8pva:Y
    (4.5Å)

    74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS000009F4BF RF00005 Escherichia
    coli

    562
    38011573 Assembly1
    rna:A:2~1534 34~37
    rna:a:1~2903 19,37~38,53,56,63,74~76
    rna:X:13~24 34~37
    12626 8pva:Z
    (4.5Å)

    76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00002905B5 RF00005 Escherichia
    coli

    562
    38011573 Assembly1
    rna:A:2~1534 29~32,34,38~41
    rna:a:1~2903 11~13,24~25,74~76
    rna:X:13~24 34~37
    12627 8pva:a
    (4.5Å)

    2753 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00004B0F34 RF02541 Escherichia
    coli

    562
    38011573 Assembly1
    rna:A:2~1534 1689,1700~1704,1832,1836~1837,
    1846,1848,1895,1912~1916,1919~
    1920,1947~1948,1959~1961

    rna:b:1~119 861~864,915,917~919,958,2339~2
    340

    rna:Y:1~76 896,1913,2469,2482~2483,2506~2
    507,2553~2555,2583~2585

    rna:Z:2~76 1907~1909,1922~1924,2251~2253,
    2450~2451,2602

    rna:5:75~76 2394~2395,2421~2422,2432
    12628 8pva:b
    (4.5Å)

    119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000049E57 RF00001 Escherichia
    coli

    562
    38011573 Assembly1
    rna:a:1~2903 41,78~81,89~90,96~97,99~101
    12629 8pvk:C1
    (2.55Å)

    3138 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00029156E5 RF02543 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C2:1~156 4~24,60,139,323~330,332~335,33
    8~339,342,344,361~362,397~412,
    644~645,679,1377~1378,1382,140
    1~1403,1424,1513,1541,1564~156
    5,1599,1810~1811,2349~2350,295
    3~2954

    rna:C4:1~119 2420~2421,2439~2440
    12630 8pvk:C2
    (2.55Å)

    156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000029C274 RF00002 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C1:1~3338 1,3~22,24~33,35~37,40,53~54,10
    4,109,112,114~115,128,136~150,
    152~156
    12631 8pvk:C4
    (2.55Å)

    119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0002617727 RF00001 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C1:1~3338 83,89~91
    12632 8pvl:C1
    (2.19Å)

    3078 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00029156E5 RF02543 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C2:1~156 4~24,60,139,323~330,332~335,33
    8~339,342,344,361~362,397~412,
    644~645,679,1377~1378,1381~138
    2,1401~1403,1424,1513,1541,156
    4~1565,1599~1600,1810~1812,234
    9~2350,2953~2954
    12633 8pvl:C2
    (2.19Å)

    156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000029C274 RF00002 Thermochaetoides
    thermophila
    DSM
    1495

    759272
    37921038 Assembly1
    rna:C1:1~3338 1~22,24~33,35~37,40~41,53~54,1
    04,109~110,112~115,128,136~150
    ,152~156
    12634 8q4f:A
    (3.1Å)

    1512 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00177
    RF01959
    RF02542
    RF01960
    Escherichia
    coli

    562
    N/A Assembly1
    rna:X:16~18 926,1400~1403,1498
    rna:Z:2~76 790,1338~1340,1400
    rna:a:1~2903 702,899,1407~1409,1418,1420,14
    28~1429,1473~1475,1483~1484,14
    93~1496,1517
    12635 8q4f:Z
    (3.1Å)

    76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli

    562
    N/A Assembly1
    rna:A:2~1534 30~31,34,38,40~41
    rna:X:16~18 34~37
    rna:a:1~2903 12,24~25,74~76
    12636 8q4f:a
    (3.1Å)

    2732 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02541 Escherichia
    coli

    562
    N/A Assembly1
    rna:A:2~1534 1687,1689,1701~1703,1848,1895,
    1912~1916,1919~1920,1947,1950,
    1959~1960

    rna:Z:2~76 1907~1908,1922~1923,2064,2252,
    2255,2450~2451,2602

    rna:b:1~119 861~864,915,917~918,958
    12637 8q4f:b
    (3.1Å)

    119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Escherichia
    coli

    562
    N/A Assembly1
    rna:a:1~2903 78~81,89,97,99~100
    12638 8q5i:1
    (2.45Å)

    3073 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000C2FD9C RF02543 Candida
    albicans

    5476
    N/A Assembly1
    rna:3:1~121 992~995,1048,1050~1052,1152,11
    67,1193,1199

    rna:4:1~158 3~22,58,330~337,339~342,345~34
    6,349,351,368~369,404~419,654~
    655,689,1390~1391,1394,1415~14
    16,1437,1526,1557,1580,1614~16
    15,1826~1828,2364,2557,2966~29
    67

    rna:10:68~76 2189,2213~2214,2736~2737,2765~
    2766

    rna:A:1~1785 842~844,1931~1932,2103,2169,21
    74,2185~2186,2233~2235,2237,22
    40~2243,2268~2270,2280~2282

    rna:g:1~5 2188~2189
    12639 8q5i:3
    (2.45Å)

    121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00001B6144 RF00001 Candida
    albicans

    5476
    N/A Assembly1
    rna:1:3~3361 79~82,86,90,100,102~104
    12640 8q5i:4
    (2.45Å)

    158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000082EA4 RF00002 Candida
    albicans

    5476
    N/A Assembly1
    rna:1:3~3361 1~22,24~33,35~37,40~41,53~54,1
    04,109,112~115,117,125~126,129
    ,136~155
    12641 8q5i:A
    (2.45Å)

    1558 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000059AE3B RF01960
    RF02542
    RF01959
    RF00177
    Candida
    albicans

    5476
    N/A Assembly1
    rna:1:3~3361 626,898,956~958,980,987~988,11
    08,1631~1633,1642~1644,1654~16
    55,1733~1734,1742,1744~1746,17
    67
    12642 8q7n:4
    (3.1Å)

    76 GO:0017070 (F) U6 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005687 (C) U4 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS0000200C70 RF00015 Homo
    sapiens

    9606
    38383864
    1368
    Assembly1
    rna:6:1~78 1~12,14~17,21,55~61
    12643 8q7n:5
    (3.1Å)

    115 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS000075BAAE RF00020 Homo
    sapiens

    9606
    38383864
    1213

    M150_0.6

    1263

    42

    1267

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390
    Assembly1
    rna:Z:49~79 40~44
    12644 8q7n:6
    (3.1Å)

    78 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS000035C796 RF00026 Homo
    sapiens

    9606
    38383864
    1334

    1124

    s59

    M021_0.6
    Assembly1
    rna:Z:49~79 29~44,46
    rna:4:1~81 51~75
    12645 8q7n:Z
    (3.1Å)

    31 N/A N/A N/A Homo
    sapiens

    9606
    38383864 Assembly1
    rna:5:3~117 54~58
    rna:6:1~78 61~65,67~76
    12646 8q7z:A2
    (2.5Å)

    1676 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF01960
    RF02542
    RF01959
    RF00177
    Gallus
    gallus

    9031
    N/A
    1371

    1337

    M244_0.6
    Assembly1
    rna:B5:1~4440 329,638,928,986~987,1010,1138,
    1663~1665,1674~1676,1686~1687,
    1769~1770,1778~1782,1803

    rna:V:1~76 919~920,1177,1639
    12647 8q7z:B5
    (2.5Å)

    3562 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02543 Gallus
    gallus

    9031
    N/A
    1371

    1337

    1185_17893325.pfm
    Assembly1
    rna:B8:1~157 1~22,58,146~147,340,342~349,35
    1~354,356~358,361,363,380~381,
    416~431,1229~1230,1258~1259,12
    96,2057~2058,2061~2062,2081~20
    83,2104,2193,2221,2236,2257,22
    92~2293,2527~2529,3367,3606,40
    15

    rna:B7:1~119 1644~1647,1649,1700,1702~1704,
    1803,1818,1845,1851

    rna:A2:1~1823 1486~1487,2616,2633~2634,3106,
    3172,3176~3177,3188,3236~3240,
    3243~3244,3271~3273,3283~3285

    rna:V:1~76 3191~3192,3215~3217,3435,3494,
    3505~3506,3784~3785,3813~3814
    12648 8q7z:B7
    (2.5Å)

    119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Gallus
    gallus

    9031
    N/A Assembly1
    rna:B5:1~4440 77~80,84,88,98,100~104
    12649 8q7z:B8
    (2.5Å)

    157 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00002
    RF02540
    Gallus
    gallus

    9031
    N/A Assembly1
    rna:B5:1~4440 1,3~22,24~37,40~41,53~54,103,1
    08,110~113,115,124~127,136,138
    ~157
    12650 8q7z:V
    (2.5Å)

    76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Gallus
    gallus

    9031
    N/A Assembly1
    rna:B5:1~4440 3~4,17,19,56,70~71,75~76
    rna:A2:1~1823 34,37
    12651 8q87:A2
    (2.4Å)

    1697 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF01960
    RF02542
    RF01959
    RF00177
    Gallus
    gallus

    9031
    N/A
    1371

    1337

    M244_0.6
    Assembly1
    rna:B5:1~4440 638,928,986~988,1663~1666,1674
    ~1676,1769~1770,1780~1782,1803

    rna:V:1~76 1206,1479~1480,1594~1596
    12652 8q87:B5
    (2.4Å)

    3638 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02543 Gallus
    gallus

    9031
    N/A
    1371

    1337

    1185_17893325.pfm
    Assembly1
    rna:B8:1~157 1~22,58,146~147,340,342~349,35
    1~354,356~358,361,363,380~381,
    416~431,1229~1230,1258~1259,12
    96,2057~2058,2061~2062,2081~20
    83,2104,2193,2221,2237,2257~22
    58,2292~2293,2296,2527~2529,33
    67,3606,4015

    rna:B7:1~119 1644~1647,1649,1700,1702~1704,
    1803,1818,1845,1851

    rna:A2:1~1823 1486~1488,3106,3186~3187,3236~
    3238,3243~3244,3271~3273,3283~
    3285

    rna:V:1~76 3191~3192,3215~3217,3435,3494,
    3784~3785,3813~3814
    12653 8q87:B7
    (2.4Å)

    119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Gallus
    gallus

    9031
    N/A Assembly1
    rna:B5:1~4440 77~80,84,88,98,100~104
    12654 8q87:B8
    (2.4Å)

    157 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00002
    RF02540
    Gallus
    gallus

    9031
    N/A Assembly1
    rna:B5:1~4440 1,3~22,24~37,40,53~54,103,108,
    110~113,115,124~127,136,138~15
    7
    12655 8q87:V
    (2.4Å)

    76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Gallus
    gallus

    9031
    N/A Assembly1
    rna:B5:1~4440 3~4,19,56,70~71,75~76
    rna:A2:1~1823 30~32,34,40~41
    12656 8qbk:C
    (2.99Å)

    61 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:D:1~14 2~14
    12657 8qbk:D
    (2.99Å)

    14 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:C:2~82 2~14
    12658 8qbk:M
    (2.99Å)

    61 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:N:1~14 2~13
    12659 8qbk:N
    (2.99Å)

    14 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:M:2~82 4~14
    12660 8qbk:R
    (2.99Å)

    61 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:S:1~14 2~14
    12661 8qbk:S
    (2.99Å)

    14 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:R:2~82 2~14
    12662 8qbk:W
    (2.99Å)

    61 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:X:1~14 2~14
    12663 8qbk:X
    (2.99Å)

    14 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:W:2~82 2~14
    12664 8qbl:C
    (2.66Å)

    61 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:D:1~14 2~14
    12665 8qbl:D
    (2.66Å)

    14 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:C:2~82 3~14
    12666 8qbl:M
    (2.66Å)

    58 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:N:1~14 2~8,11~14
    12667 8qbl:N
    (2.66Å)

    14 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:M:2~79 3~5,8~14
    12668 8qbl:O
    (2.66Å)

    61 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:Y:1~14 2~9,13
    12669 8qbl:R
    (2.66Å)

    61 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:S:1~14 2~14
    12670 8qbl:S
    (2.66Å)

    14 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:R:2~82 3~14
    12671 8qbl:W
    (2.66Å)

    61 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:X:1~14 2~14
    12672 8qbl:X
    (2.66Å)

    14 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:W:2~82 3~14
    12673 8qbl:Y
    (2.66Å)

    14 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:O:2~82 3~4,7~14
    12674 8qbl:b
    (2.66Å)

    61 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:c:1~14 2~14
    12675 8qbl:c
    (2.66Å)

    14 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:b:2~82 2~14
    12676 8qbm:C
    (3.09Å)

    61 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:D:1~14 2~14
    12677 8qbm:D
    (3.09Å)

    14 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:C:2~82 2~14
    12678 8qbm:M
    (3.09Å)

    61 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:N:1~14 3~13
    12679 8qbm:N
    (3.09Å)

    14 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:M:2~82 3~14
    12680 8qbm:O
    (3.09Å)

    61 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:Y:1~14 2~13
    12681 8qbm:R
    (3.09Å)

    61 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:S:1~14 2~14
    12682 8qbm:S
    (3.09Å)

    14 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:R:2~82 3~14
    12683 8qbm:W
    (3.09Å)

    61 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:X:1~14 2~14
    12684 8qbm:X
    (3.09Å)

    14 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:W:2~82 2~14
    12685 8qbm:Y
    (3.09Å)

    14 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:O:2~82 4~14
    12686 8qbm:b
    (3.09Å)

    61 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:c:1~14 2~14
    12687 8qbm:c
    (3.09Å)

    14 N/A N/A N/A Escherichia
    coli
    BL21(DE3)

    469008
    38788717 Assembly1
    rna:b:2~82 2~14
    12688 8qbt:4
    (2.2Å)

    10 N/A N/A N/A Sinorhizobium
    medicae

    110321
    38503735 Assembly1
    rna:i:2~1540 13,15~21
    rna:5:1~77 19~22
    rna:6:1~76 16~18
    rna:7:1~76 13~14
    12689 8qbt:5
    (2.2Å)

    77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00002E063F RF00005 Escherichia
    coli
    BW25113

    679895
    38503735 Assembly1
    rna:A:1~2903 20,38~39,53,57,64,73,75~77
    rna:i:2~1540 35~38
    rna:4:13~22 35~38
    12690 8qbt:6
    (2.2Å)

    77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00002E063F RF00005 Escherichia
    coli
    BW25113

    679895
    38503735 Assembly1
    rna:A:1~2903 11~13,24~25,74~76
    rna:i:2~1540 30~32,34,38,40~41
    rna:4:13~22 34~37
    12691 8qbt:7
    (2.2Å)

    76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00005F0912 RF00005 Escherichia
    coli
    BW25113

    679895
    38503735 Assembly1
    rna:A:1~2903 19,55,70,74~76
    rna:i:2~1540 34,38
    rna:4:13~22 35~37
    12692 8qbt:A
    (2.2Å)

    2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02541 Escherichia
    coli
    BW25113

    679895
    38503735 Assembly1
    rna:B:2~119 861~864,915,917~919,958~959,23
    40

    rna:i:2~1540 1700~1704,1832,1836~1837,1846,
    1848,1912~1916,1919~1920,1947~
    1948,1959~1961

    rna:5:1~77 896~897,1913,1942,2470,2482,25
    06~2507,2553~2555,2583~2585,26
    02

    rna:6:1~76 1907~1909,1922~1924,2251~2253,
    2439,2450~2451,2602

    rna:7:1~76 1851,2112,2168,2394~2395,2421~
    2422,2432
    12693 8qbt:B
    (2.2Å)

    118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Escherichia
    coli
    BW25113

    679895
    38503735 Assembly1
    rna:A:1~2903 41,78~81,89,96~97,99~100
    12694 8qbt:i
    (2.2Å)

    1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF01959
    RF00177
    RF02542
    RF01960
    Escherichia
    coli
    BW25113

    679895
    38503735 Assembly1
    rna:A:1~2903 702,783~784,899,1407~1409,1418
    ,1429,1473~1475,1483~1484,1494
    ~1496,1517

    rna:4:13~22 530,693,926,1400~1401,1492~149
    3,1498

    rna:5:1~77 530,1054,1493
    rna:6:1~76 790,966,1229~1230,1338~1341,14
    00

    rna:7:1~76 694,1382~1383
    12695 8qcq:A
    (2.3Å)

    2745 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02541 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168

    224308
    38503735 Assembly1
    rna:B:3~114 908~911,962~966,1004
    rna:a:8~1540 1745~1749,1861,1866,1875,1877,
    1941~1945,1948~1949,1976~1979,
    1988~1990

    rna:y:1~77 943~944,1942,1971,2499,2511,25
    35~2536,2582~2584,2612~2614,26
    31

    rna:w:1~77 1936~1938,1951~1952,2280~2282,
    2479~2480,2630~2631
    12696 8qcq:B
    (2.3Å)

    112 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168

    224308
    38503735 Assembly1
    rna:A:3~2925 76~79,87,94~95,97~98
    12697 8qcq:a
    (2.3Å)

    1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF01959
    RF00177
    RF02542
    RF01960
    Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168

    224308
    38503735 Assembly1
    rna:A:3~2925 711,793,909,1416~1418,1427~142
    9,1438,1483~1485,1493~1494,150
    4~1506,1527

    rna:y:1~77 539,1064,1502~1503
    rna:w:1~77 799,976,1238~1239,1347~1349,14
    09

    rna:8:16~21 539,936,1409~1410,1412,1502~15
    03,1508
    12698 8qcq:w
    (2.3Å)

    77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168

    224308
    38503735 Assembly1
    rna:A:3~2925 11~12,25~26,75~77
    rna:a:8~1540 31~33,35,39,41~42
    rna:8:16~21 35~38
    12699 8qcq:y
    (2.3Å)

    77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168

    224308
    38503735 Assembly1
    rna:A:3~2925 20,38~39,53,57,64,73,75~77
    rna:a:8~1540 35~38
    rna:8:16~21 35~38
    12700 8qfd:5
    (2.2Å)

    3130 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02543 Homo
    sapiens

    9606
    38383789
    M054_0.6

    1306

    1302

    1303

    42

    1148

    957

    21

    1373

    938

    1375

    s52

    s51

    s50

    931

    813

    M347_0.6

    s59

    995

    994

    991

    1312

    1311

    673

    123

    124

    125

    986

    s100

    s102

    52

    533

    M227_0.6

    1384

    375

    926

    988

    1321

    1083

    704

    705

    706

    707

    1124

    987

    1126

    703

    M349_0.6

    1237

    83

    1181

    s17

    837

    838

    1334

    s70

    s72

    1393

    1012

    1013

    1236

    M290_0.6

    1231

    1232

    1233

    1335

    1238

    M109_0.6

    1336

    1331

    1239

    588

    1332

    1333

    s99

    589

    1389

    902

    900

    901

    906

    905

    33

    924

    853

    1245

    1244

    1183

    1227

    1226

    M035_0.6

    1223

    M156_0.6

    1344

    1347

    60

    s81

    M077_0.6

    708

    100

    852

    970

    M154_0.6

    s55

    979

    M153_0.6

    183

    185

    546

    1328

    1212

    M102_0.6

    1211

    1216

    1214

    1215

    1352

    467

    M148_0.6

    1354

    M103_0.6

    169

    91

    162

    M070_0.6

    M272_0.6

    M050_0.6

    1187

    1182

    815

    503

    M086_0.6

    M273_0.6

    1165

    1166

    886

    156

    748

    749

    M061_0.6

    s48

    879

    953

    952

    872

    954

    870

    1164

    1177

    M104_0.6

    1173

    s77

    958

    1271

    1272

    779

    778

    1178

    M151_0.6

    836

    78

    1285

    M083_0.6

    1288

    354

    688

    1360

    800
    Assembly1
    rna:7:1~119 1728~1730,1784~1788,1886,1901,
    1928,1934

    rna:8:2~156 -4~17,53,334,337~343,345~348,3
    51~352,355,357,374~375,410~425
    ,1296~1297,1325~1326,1363,2300
    ~2301,2304~2305,2325~2326,2347
    ,2436,2464,2770~2772,3890
    << < 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.