SEQ2FUN

FURNA
Download all results in tab-seperated text for 16611 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    12901 8rcm:A2
    (3.59Å)
    		 1537 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:72:1~2904 702,783~784,899,1407~1409,1418
    ,1428~1429,1473~1475,1483~1484
    ,1494~1496,1517
    rna:V2:8~65 693,926,1196,1397,1400~1403,14
    92~1493,1498,1534~1537
    rna:W:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:Y2:1~76 530,1054,1493
    12902 8rcm:V2
    (3.59Å)
    		 58 N/A N/A N/A Escherichia
    coli
    562    		 38409277 Assembly1
    rna:A1:1~1542 8,10~15,17~18,20~24,27~28
    rna:A2:1~1537 40~43,48,50~55,57~58
    rna:W:1~76 51~53
    rna:W1:8~48 21~23
    rna:X2:1~77 48~49
    rna:Y1:8~48 24~26
    rna:Y2:1~76 54~57
    12903 8rcm:W
    (3.59Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000AE709C RF00005 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:72:1~2904 11~12,74~76
    rna:A2:1~1537 30~31,34,38,40~41
    rna:V2:8~65 34~37
    12904 8rcm:W1
    (3.59Å)
    		 36 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000024E9F9 RF00005 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:A1:1~1542 30~32,34,38~41
    rna:V2:8~65 34~37
    12905 8rcm:X2
    (3.59Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... URS0002915713 RF00005 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:72:1~2904 1,20,57,71~73,76~77
    rna:V2:8~65 35~37
    12906 8rcm:Y1
    (3.59Å)
    		 36 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00003179F7 RF00005 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:71:1906~1924 37~38
    rna:A1:1~1542 34~37,41
    rna:V2:8~65 34~37
    12907 8rcm:Y2
    (3.59Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001C39A4 RF00005 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:72:1~2904 19,52,56,64,74~76
    rna:A2:1~1537 34~37
    rna:V2:8~65 34~37
    12908 8rcs:71
    (4.46Å)
    		 19 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002915702 RF02541 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:A1:1~1542 1912~1916,1919~1920
    rna:W1:8~46 1907,1909,1923~1924
    12909 8rcs:72
    (4.46Å)
    		 2904 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002915702 RF02541 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:82:1~120 861~863,915~919,958
    rna:A1:1~1542 2153~2154
    rna:A2:1~1537 1846~1847,1912~1916,1919~1920,
    1949~1950,1959~1961
    rna:W:1~76 1850~1851,1891~1893,2112,2168,
    2394~2395,2421~2422,2432
    rna:Y:1~76 2063~2064,2251~2253,2450~2451,
    2602
    12910 8rcs:82
    (4.46Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:72:1~2904 78~81,90,97,99~101
    12911 8rcs:A1
    (4.46Å)
    		 1542 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:71:1906~1924 1407~1410,1494~1496,1517
    rna:V2:5~63 693,926,1196,1397,1400~1403,14
    92~1493,1498,1505,1535~1542
    rna:W1:8~46 790,966,1229~1230,1338~1341,14
    00
    rna:Y1:8~48 530,1054,1493
    12912 8rcs:A2
    (4.46Å)
    		 1537 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:72:1~2904 702,1407~1409,1418,1420,1483~1
    484,1493~1495,1517
    rna:V2:5~63 926,1397,1400~1401,1492~1493,1
    498,1534~1537
    rna:W:1~76 790,966,1230,1338~1340,1400
    rna:Y:1~76 530,955,1054,1492~1493
    12913 8rcs:V2
    (4.46Å)
    		 59 N/A N/A N/A Escherichia
    coli
    562    		 38409277 Assembly1
    rna:A1:1~1542 6~15,17~18,20~25,28
    rna:A2:1~1537 40~44,50~55,57~58
    rna:W:1~76 51~53
    rna:W1:8~46 21~23
    rna:Y:1~76 54~56
    rna:Y1:8~48 24~26
    12914 8rcs:W
    (4.46Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000AE709C RF00005 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:72:1~2904 3~4,19~20,56,70~72,75~76
    rna:A2:1~1537 30~31,34,38~42
    rna:V2:5~63 34~37
    12915 8rcs:W1
    (4.46Å)
    		 33 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000024E9F9 RF00005 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:71:1906~1924 12~13
    rna:A1:1~1542 29~32,34,38~42
    rna:V2:5~63 34~37
    12916 8rcs:Y
    (4.46Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001C39A4 RF00005 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:72:1~2904 74~76
    rna:A2:1~1537 34~36,41
    rna:V2:5~63 34~37
    12917 8rcs:Y1
    (4.46Å)
    		 36 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00003179F7 RF00005 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:71:1906~1924 37~38
    rna:A1:1~1542 34~37
    rna:V2:5~63 34~37
    12918 8rct:71
    (5.32Å)
    		 19 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002915702 RF02541 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:A1:1~1542 1912~1916,1919~1920
    rna:W1:8~48 1907,1909,1923~1924
    12919 8rct:72
    (5.32Å)
    		 2904 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002915702 RF02541 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:82:1~120 861~863,915~919,958
    rna:A2:1~1537 1846~1847,1912~1916,1919~1920,
    1949~1950,1959~1961
    rna:W:1~76 1850~1851,1891~1893,2112,2168,
    2394~2395,2421~2422,2432
    rna:Y:1~76 2063~2064,2251~2253,2450~2451,
    2602
    12920 8rct:82
    (5.32Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:72:1~2904 78~81,90,97,99~100
    12921 8rct:A1
    (5.32Å)
    		 1542 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:71:1906~1924 1407~1410,1494~1496,1517
    rna:V2:5~63 530,693,926,1196,1397,1400~140
    3,1492~1493,1498,1505,1535~154
    2
    rna:W1:8~48 790,966,1229~1230,1338~1341,14
    00
    rna:Y1:8~48 530,1054,1493
    12922 8rct:A2
    (5.32Å)
    		 1537 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:72:1~2904 702,1407~1410,1418,1420,1483~1
    484,1491,1493~1496,1517
    rna:V2:5~63 926,1397,1400~1401,1492~1493,1
    498,1534~1537
    rna:W:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:Y:1~76 530,955,1054,1492~1493
    12923 8rct:V2
    (5.32Å)
    		 59 N/A N/A N/A Escherichia
    coli
    562    		 38409277 Assembly1
    rna:A1:1~1542 6~15,17~18,20~28
    rna:A2:1~1537 41~44,50~55,57~58
    rna:W:1~76 51~53
    rna:W1:8~48 21~23
    rna:Y:1~76 54~56
    rna:Y1:8~48 24~26
    12924 8rct:W
    (5.32Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000AE709C RF00005 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:72:1~2904 3~4,19,56,70~72,75~76
    rna:A2:1~1537 30~31,34,38~42
    rna:V2:5~63 34~37
    12925 8rct:W1
    (5.32Å)
    		 36 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000024E9F9 RF00005 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:71:1906~1924 12~13
    rna:A1:1~1542 29~32,34,38~42
    rna:V2:5~63 34~37
    12926 8rct:Y
    (5.32Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001C39A4 RF00005 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:72:1~2904 74~76
    rna:A2:1~1537 34~37,41
    rna:V2:5~63 34~37
    12927 8rct:Y1
    (5.32Å)
    		 36 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00003179F7 RF00005 Escherichia
    coli
    562    		 38409277 Assembly1
    rna:71:1906~1924 37~38
    rna:A1:1~1542 34~37
    rna:V2:5~63 34~37
    12928 8rd8:D8
    (2.62Å)
    		 115 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00029156FC RF00001 Psychrobacter
    urativorans
    45610    		 38355796 Assembly1
    rna:Z2:9~2868 76~79,94,96~97
    12929 8rd8:Z2
    (2.62Å)
    		 2705 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00008DA65B RF02541 Psychrobacter
    urativorans
    45610    		 38355796 Assembly1
    rna:D8:1~115 846~849,900,902~904
    rna:iN:48~1578 1688~1689,1691~1692,1818,1823,
    1832,1834,1898~1902,1905~1906,
    1933~1936,1945~1947
    12930 8rd8:iN
    (2.62Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00008D5990 RF00177 Psychrobacter
    urativorans
    45610    		 38355796 Assembly1
    rna:Z2:9~2868 746,828,943,1452~1454,1463~146
    5,1474~1475,1519,1528~1529,153
    7,1539~1541,1562
    12931 8rdv:D8
    (2.6Å)
    		 115 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00029156FC RF00001 Psychrobacter
    urativorans
    45610    		 38355796 Assembly1
    rna:Z2:9~2868 76~79,94,96~97
    12932 8rdv:V
    (2.6Å)
    		 76 N/A URS0002915729 N/A Psychrobacter
    urativorans
    45610    		 38355796 Assembly1
    rna:Z2:9~2868 2~3,12,74~76
    rna:Y:13~18 34,37
    rna:iN:48~1578 31~32,34,38~41
    12933 8rdv:Z2
    (2.6Å)
    		 2710 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002915704 RF02541 Psychrobacter
    urativorans
    45610    		 38355796 Assembly1
    rna:D8:1~115 846~848,900,902~904
    rna:V:1~76 1894,1909,2049~2050,2234~2236,
    2238,2433~2434
    rna:iN:48~1578 1677,1688~1689,1691~1692,1818,
    1823,1832~1834,1898~1902,1905~
    1906,1933~1934,1945~1947
    12934 8rdv:iN
    (2.6Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00008D5990 RF00177 Psychrobacter
    urativorans
    45610    		 38355796 Assembly1
    rna:Z2:9~2868 746,828,943,1452~1454,1463,147
    4~1475,1519~1520,1528~1529,153
    7,1539~1541,1562
    rna:V:1~76 834,1010,1383~1385,1445
    rna:Y:13~18 737,833,970,1445~1446,1448,154
    3
    12935 8rdw:D8
    (2.74Å)
    		 115 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00029156FC RF00001 Psychrobacter
    urativorans
    45610    		 38355796 Assembly1
    rna:Z2:9~2868 76~79,94,96~97
    12936 8rdw:Z2
    (2.74Å)
    		 2729 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000291572D RF02541 Psychrobacter
    urativorans
    45610    		 38355796 Assembly1
    rna:D8:1~115 846~849,900,902~904
    rna:iN:48~1578 1677,1688~1689,1691~1692,1818,
    1823,1832~1834,1881,1898~1902,
    1905~1906,1933~1934,1945~1947
    12937 8rdw:iN
    (2.74Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00008D5990 RF00177 Psychrobacter
    urativorans
    45610    		 38355796 Assembly1
    rna:Z2:9~2868 746,828,943,1452~1454,1463,147
    4,1519~1520,1528~1529,1537~154
    1,1562
    12938 8rjb:K
    (2.69243Å)
    		 3543 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632C RF02543 Oryctolagus
    cuniculus
    9986    		 38896445
    28710774
    29872003
    34783343    		 Assembly1
    rna:q:1~76 3754~3755,3769~3771,4196~4198,
    4200,4396~4397,4548
    rna:u:1~120 1736~1738,1741,1792~1796,1894,
    1909,1936,1942
    rna:v:1~156 1~22,58,146,339,341~348,350~35
    3,356~357,360,362,379~380,415~
    430,1304~1305,1333~1334,1371,2
    308~2309,2312~2313,2333~2334,2
    355,2444,2472,2487~2488,2544~2
    545,2778~2780,3890
    12939 8rjb:q
    (2.69243Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS0000868530 RF00005 Sus
    scrofa
    9823    		 38896445
    28710774
    29872003
    34783343    		 Assembly1
    rna:K:1~5069 2~3,12,24~25,74~76
    12940 8rjb:u
    (2.69243Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 38896445
    28710774
    29872003
    34783343    		 Assembly1
    rna:K:1~5069 77~80,84,88,98,100~101,103~104
    12941 8rjb:v
    (2.69243Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B2C76 RF00002 Oryctolagus
    cuniculus
    9986    		 38896445
    28710774
    29872003
    34783343    		 Assembly1
    rna:K:1~5069 3~22,24~37,40,53~54,103,108,11
    0~113,115,124~125,127,136,138~
    149,151~156
    12942 8rjc:K
    (2.90061Å)
    		 3543 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632C RF02543 Oryctolagus
    cuniculus
    9986    		 38896445
    28710774
    29872003
    34783343    		 Assembly1
    rna:q:1~76 3769~3771,4196~4198,4200,4396~
    4397,4547~4548
    rna:u:1~120 1736~1739,1741,1792~1796,1894,
    1909,1936,1942
    rna:v:1~156 1~22,58,146,339,342~348,350~35
    3,356~357,360,362,379~380,415~
    430,1304~1305,1333~1334,1371,2
    308~2309,2312~2313,2332~2334,2
    355,2444,2472,2487~2488,2508,2
    544~2545,2778~2780,3890
    12943 8rjc:q
    (2.90061Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS0000868530 RF00005 Sus
    scrofa
    9823    		 38896445
    28710774
    29872003
    34783343    		 Assembly1
    rna:K:1~5069 2,12,24~25,74~76
    12944 8rjc:u
    (2.90061Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 38896445
    28710774
    29872003
    34783343    		 Assembly1
    rna:K:1~5069 77~80,84,88,98,100~104
    12945 8rjc:v
    (2.90061Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B2C76 RF00002 Oryctolagus
    cuniculus
    9986    		 38896445
    28710774
    29872003
    34783343    		 Assembly1
    rna:K:1~5069 3~22,24~37,40~41,53~54,103,108
    ,110~113,115,124~127,136,138~1
    49,151~156
    12946 8rjd:K
    (2.78574Å)
    		 3543 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632C RF02543 Oryctolagus
    cuniculus
    9986    		 38896445
    28710774
    29872003
    34783343    		 Assembly1
    rna:q:1~76 3755,3769~3771,4196~4198,4200,
    4396~4397,4548
    rna:u:1~120 1736~1739,1741,1792~1796,1894,
    1909,1936,1942
    rna:v:1~156 1~22,58,146,339,341~348,350~35
    3,356~357,360,362,379~380,409,
    415~430,1304~1305,1333~1334,13
    71,2308~2309,2312~2313,2332~23
    34,2355,2444,2472,2487~2488,25
    08~2509,2544~2545,2778~2780,38
    90
    12947 8rjd:q
    (2.78574Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS0000868530 RF00005 Sus
    scrofa
    9823    		 38896445
    28710774
    29872003
    34783343    		 Assembly1
    rna:K:1~5069 2~3,12~13,24~25,74~76
    12948 8rjd:u
    (2.78574Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 38896445
    28710774
    29872003
    34783343    		 Assembly1
    rna:K:1~5069 77~80,84,88,98,100~104
    12949 8rjd:v
    (2.78574Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B2C76 RF00002 Oryctolagus
    cuniculus
    9986    		 38896445
    28710774
    29872003
    34783343    		 Assembly1
    rna:K:1~5069 3~22,24~37,40,53~54,103,108,11
    0~113,115,124~125,127,136,138~
    149,151~156
    12950 8rl2:L5
    (2.84Å)
    		 3382 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000075EC78 RF02543 Homo
    sapiens
    9606    		 40207627
    29872004
    M054_0.6

    1306

    769

    M329_0.6

    1303

    762

    42

    1148

    1149

    764

    870

    167

    21

    1079

    930

    1029

    1072

    1073

    s77

    1071

    819

    1373

    938

    546

    s52

    s50

    813

    936

    s59

    995

    994

    1314

    991

    1312

    1311

    1150

    123

    124

    125

    1068

    s72

    1060

    s100

    s102

    52

    533

    M227_0.6

    1384

    375

    926

    822

    1128

    988

    1321

    1083

    1081

    704

    705

    1328

    707

    1124

    987

    1126

    703

    M077_0.6

    M290_0.6

    1037

    1336

    1181

    119

    797

    796

    795

    836

    837

    791

    790

    838

    1334

    s70

    1016

    1017

    1393

    610

    1012

    1013

    1234

    1236

    1237

    763

    1231

    1232

    1233

    1335

    1331

    M109_0.6

    440

    1238

    1239

    1333

    589

    776

    s96

    s99

    M273_0.6

    1389

    902

    821

    900

    901

    906

    905

    33

    924

    s17

    853

    M044_0.6

    1245

    1183

    s62

    s61

    1227

    883

    M035_0.6

    1223

    M156_0.6

    1165

    M320_0.6

    1347

    60

    s81

    M349_0.6

    595

    175

    1026

    977

    976

    974

    852

    970

    M154_0.6

    884

    s55

    979

    M153_0.6

    183

    185

    1375

    1036

    706

    1034

    659

    1212

    M102_0.6

    1211

    1216

    1042

    986

    467

    M148_0.6

    1354

    708

    M103_0.6

    169

    91

    1127

    162

    M070_0.6

    M272_0.6

    M020_0.6

    M050_0.6

    1187

    1182

    815

    503

    727

    M347_0.6

    722

    935

    M086_0.6

    1035

    1164

    604

    1166

    606

    886

    156

    748

    749

    608

    1313

    M061_0.6

    s48

    1055

    878

    1059

    953

    952

    872

    954

    957

    1107

    1352

    774

    1215

    M104_0.6

    1173

    770

    773

    958

    1271

    1272

    1273

    779

    778

    1178

    M151_0.6

    78

    1285

    M083_0.6

    1041

    1040

    1043

    1045

    1044

    1288

    354

    1360

    684

    800

    1368

    804    		 Assembly1
    rna:L8:1~156 1~22,58,146~147,339,342~348,35
    0~353,355~357,360,362,379~380,
    415~430,1304~1305,1333~1334,13
    71,2308~2309,2312~2313,2333~23
    34,2355,2444,2472,2488,2493~24
    94,2508,2778~2780,3890,4162
    12951 8rl2:L8
    (2.84Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000005270 RF00002 Homo
    sapiens
    9606    		 40207627
    29872004
    1227

    592

    s24

    993

    1215

    1352

    s37

    1238

    1178

    M085_0.6

    1389

    1360

    589

    375

    M106_0.6    		 Assembly1
    rna:L5:1~5069 3~13,15~22,24~37,40~41,53~54,1
    03,108,110~113,115,125~127,136
    ,138~156
    12952 8rm5:2
    (6.9Å)
    		 98 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003EE995 RF00004 Homo
    sapiens
    9606    		 38778104
    504    		 Assembly1
    rna:Z:29~43 33~45
    rna:6:32~106 3~14
    12953 8rm5:4
    (6.9Å)
    		 110 GO:0017070 (F) U6 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005687 (C) U4 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00003F07BD RF00015 Homo
    sapiens
    9606    		 38778104
    583    		 Assembly1
    rna:6:32~106 1~18,55~62
    12954 8rm5:5
    (6.9Å)
    		 112 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000075BAAE RF00020 Homo
    sapiens
    9606    		 38778104
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390    		 Assembly1
    rna:z:-3~15 41~43
    12955 8rm5:6
    (6.9Å)
    		 64 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000035C796 RF00026 Homo
    sapiens
    9606    		 38778104
    1334

    s59

    M021_0.6    		 Assembly1
    rna:2:3~184 85~88,90~95
    rna:z:-3~15 37~44
    rna:4:1~144 51~75
    12956 8rm5:Z
    (6.9Å)
    		 15 N/A N/A N/A Homo
    sapiens
    9606    		 38778104 Assembly1
    rna:2:3~184 29~30,32~39,42~43
    12957 8rm5:z
    (6.9Å)
    		 18 N/A URS0002915754 N/A Homo
    sapiens
    9606    		 38778104 Assembly1
    rna:5:3~117 -3~-1
    rna:6:32~106 3,5~10
    12958 8ro0:2
    (2.9Å)
    		 61 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 N/A RF00004 Caenorhabditis
    elegans
    6239    		 38925148 Assembly1
    rna:6:1~90 3~12,18,20~23,26~28
    12959 8ro0:5
    (2.9Å)
    		 111 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000067AA3F RF00020 Caenorhabditis
    elegans
    6239    		 38925148 Assembly1
    rna:6:1~90 45~47
    12960 8ro0:6
    (2.9Å)
    		 90 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00004B9C91 RF00026 Caenorhabditis
    elegans
    6239    		 38925148 Assembly1
    rna:2:3~186 45~46,48~51,75,77~78,82~90
    rna:5:3~121 61~62,64~65
    rna:In:10~28 24,36
    12961 8ro0:In
    (2.9Å)
    		 19 N/A N/A N/A Caenorhabditis
    elegans
    6239    		 38925148 Assembly1
    rna:6:1~90 13,25
    12962 8ro1:2
    (3.0Å)
    		 76 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 N/A RF00004 Caenorhabditis
    elegans
    6239    		 38925148 Assembly1
    rna:6:1~101 4~12,18,20~23,26~28
    12963 8ro1:5
    (3.0Å)
    		 111 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00029EB37E RF00020 Caenorhabditis
    elegans
    6239    		 38925148 Assembly1
    rna:6:1~101 45~46
    12964 8ro1:6
    (3.0Å)
    		 101 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00004B9C91 RF00026 Caenorhabditis
    elegans
    6239    		 38925148 Assembly1
    rna:2:1~186 42,45~51,77,82~90
    rna:5:3~121 61~62,64~65
    rna:IN:1~51 24~25,39~40
    12965 8ro1:IN
    (3.0Å)
    		 33 N/A N/A N/A Caenorhabditis
    elegans
    6239    		 38925148 Assembly1
    rna:6:1~101 1~2,24
    12966 8ro2:2
    (3.5Å)
    		 39 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003EE995 RF00004 Homo
    sapiens
    9606    		 38925148
    M068_0.6    		 Assembly1
    rna:6:1~97 1,3~11,16~17,19~22,25~28
    12967 8ro2:5
    (3.5Å)
    		 92 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS0000118C49 RF00020 Homo
    sapiens
    9606    		 38925148
    M150_0.6

    42

    M025_0.6

    M075_0.6

    185

    s67

    M158_0.6    		 Assembly1
    rna:6:1~97 42~43
    12968 8ro2:6
    (3.5Å)
    		 97 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000035C796 RF00026 Homo
    sapiens
    9606    		 38925148
    1334

    1124

    s59

    M021_0.6    		 Assembly1
    rna:2:1~39 47,49~56,80,82~83,87~95,97
    rna:5:9~115 67,69~70
    rna:IN:1~154 30,35
    12969 8ro2:IN
    (3.5Å)
    		 41 N/A N/A N/A Homo
    sapiens
    9606    		 38925148 Assembly1
    rna:6:1~97 12,17
    12970 8rpy:A
    (2.64Å)
    		 2900 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A76322 RF02541 Escherichia
    coli
    562    		 38730238 Assembly1
    rna:B:1~120 861~864,915,917~918,958~959
    12971 8rpy:B
    (2.64Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00008116C5 RF00001 Escherichia
    coli
    562    		 38730238 Assembly1
    rna:A:1~2903 78~80,89~90,97,99~100
    12972 8rpz:A
    (2.44Å)
    		 2900 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A76322 RF02541 Escherichia
    coli
    562    		 38730238 Assembly1
    rna:B:1~120 861~863,915,917~919,958~959
    12973 8rpz:B
    (2.44Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00008116C5 RF00001 Escherichia
    coli
    562    		 38730238 Assembly1
    rna:A:1~2903 78~81,89~90,97,99~100
    12974 8rq0:A
    (2.44Å)
    		 2900 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A76322 RF02541 Escherichia
    coli
    562    		 38730238 Assembly1
    rna:B:1~120 861~863,915,917~919,958~959
    12975 8rq0:B
    (2.44Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00008116C5 RF00001 Escherichia
    coli
    562    		 38730238 Assembly1
    rna:A:1~2903 78~81,89~90,97,99~100
    12976 8rq2:A
    (2.44Å)
    		 2900 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A76322 RF02541 Escherichia
    coli
    562    		 38730238 Assembly1
    rna:B:1~120 861~863,915,917~919,958~959
    12977 8rq2:B
    (2.44Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00008116C5 RF00001 Escherichia
    coli
    562    		 38730238 Assembly1
    rna:A:1~2903 78~81,89~90,97,99~100
    12978 8rri:A
    (2.4Å)
    		 1551 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023359E4 RF02541 Homo
    sapiens
    9606    		 40312422
    591

    590

    M269_0.6

    1165

    1328

    1228

    M019_0.6

    175

    1199

    693

    M106_0.6

    156

    1191

    1075

    M161_0.6

    M111_0.6

    1271

    1395

    M272_0.6

    M013_0.6

    M081_0.6

    994

    996

    M087_0.6

    1310

    1353

    1334

    M148_0.6

    1239

    M350_0.6

    120

    74

    161

    M043_0.6

    s93

    800

    s25

    33

    M088_0.6

    1289

    s44

    1364

    s41

    1100

    1246

    1385

    687

    M016_0.6

    s60    		 Assembly1
    rna:Ay:73~76 2899,2901,2909~2910,2919
    rna:AA:649~1602 2558,2576,2582~2583,2610~2613,
    2622~2624
    rna:Ax:1~76 2572,2585~2587,2726~2727,2815~
    2817,2937~2938
    12979 8rri:AA
    (2.4Å)
    		 954 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00008F947B RF00177 Homo
    sapiens
    9606    		 40312422
    1321

    886

    1302

    156

    748

    749

    1207

    M027_0.6

    979

    M089_0.6

    82

    495

    175

    399

    492

    s44

    M043_0.6

    M033_0.6

    M329_0.6

    1194

    1197

    1196

    938

    M142_0.6

    509

    1290

    1031

    760

    994

    M164_0.6

    1312

    1273

    779

    778

    s14

    120

    121

    M047_0.6

    M169_0.6

    M274_0.6

    M325_0.6

    1354

    78

    800

    17

    1186

    M331_0.6

    1241

    M143_0.6

    1364

    M016_0.6

    33

    s61    		 Assembly1
    rna:A:1671~3230 1001,1491~1492,1502~1504,1548~
    1549,1560~1561,1582
    rna:Az:0~31 877~878,906,993,1179,1481,1484
    ~1486,1558,1563
    rna:Ax:1~76 1078,1220,1358~1359,1422~1424,
    1484
    12980 8rri:Ax
    (2.4Å)
    		 70 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00023359E1 RF00005 Homo
    sapiens
    9606    		 40312422
    1285

    1146

    M043_0.6

    1002    		 Assembly1
    rna:AA:649~1602 29~32,34,38~41
    rna:A:1671~3230 12~13,24~25,74~76
    rna:Az:0~31 34~37
    12981 8rri:Az
    (2.4Å)
    		 32 N/A N/A N/A Homo
    sapiens
    9606    		 40312422
    738    		 Assembly1
    rna:AA:649~1602 0~1,3~8,10~11,13
    rna:Ax:1~76 4~6
    12982 8ruh:A
    (4.55Å)
    		 390 GO:0000373 (P) Group II intron splicing URS00029EB33A RF02001
    RF01998    		 Oceanobacillus
    iheyensis
    182710    		 38898052 Assembly1
    rna:B:-2~0 181,183~184,374~375
    12983 8rw1:1
    (3.35Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002CB170 RF00005 Saccharomyces
    cerevisiae
    S288C
    559292    		 39193907 Assembly1
    rna:2:1~1798 29~32,34,38~42
    rna:3:15~40 35~37
    12984 8rw1:2
    (3.35Å)
    		 1798 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00029EB32A RF01960 Kluyveromyces
    lactis
    NRRL
    Y-1140
    284590    		 39193907 Assembly1
    rna:3:15~40 576,903,1149,1632,1635~1638,17
    59,1766,1798
    rna:1:1~76 1000,1190,1460,1573~1575,1635
    12985 8rw1:3
    (3.35Å)
    		 26 N/A N/A N/A Kluyveromyces
    lactis
    28985    		 39193907 Assembly1
    rna:2:1~1798 20,25~26,28~31,34~35
    rna:1:1~76 28~31
    12986 8rwg:A
    (2.46Å)
    		 2805 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000028F9C0 RF02541 Pseudomonas
    aeruginosa
    PAO1
    208964    		 N/A Assembly1
    rna:B:1~1527 1678,1689~1693,1818,1823,1832,
    1834,1898~1899,1902,1905~1906,
    1933~1934,1936,1945~1947
    rna:C:1~120 849~851,903,905~907
    12987 8rwg:B
    (2.46Å)
    		 1527 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004149DE RF00177 Pseudomonas
    aeruginosa
    PAO1
    208964    		 N/A Assembly1
    rna:A:1~2889 696,778,893,1401~1403,1412,141
    4,1423,1468~1469,1477~1478,148
    5,1487~1490,1511
    12988 8rwg:C
    (2.46Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000305490C RF00001 Pseudomonas
    aeruginosa
    PAO1
    208964    		 N/A Assembly1
    rna:A:1~2889 78~81,97,99~100
    12989 8rxh:L1
    (2.93Å)
    		 1677 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000291574A RF02543 Leishmania
    major
    strain
    Friedlin
    347515    		 38722744 Assembly1
    rna:L2:2~1526 39~41,69,92~93,312~313,321,327
    ~328,341,343~350,460~464,668~6
    69,674,676~685,747~749,762,818
    ,826~828,856~859,869~870,881~8
    82,911~912,916,920,922~927,929
    ~930,932~933,935~938,941~943,9
    47,951,959,964~969,972,975,988
    ~991,1006~1013,1018,1044~1046,
    1098~1099,1105~1107,1109,1173,
    1180~1182,1185~1193,1207~1209,
    1262~1267,1364~1370,1372~1373,
    1526,1533~1544,1547,1581~1601,
    1611,1613,1619,1626~1630,1632~
    1635,1649~1651,1654,1656,1658,
    1661,1666~1667,1682,1712,1730,
    1755~1756,1758,1770~1774,1776~
    1781
    rna:L3:5~216 876,889~890,906~908,1638~1639,
    1674,1710,1737,1740~1742,1746~
    1750,1763,1767~1768,1778~1780
    rna:L4:1~184 222~230,455~458,461,1250,1270,
    1288,1504,1544~1545
    rna:L5:2~135 1564,1568
    rna:L6:3~73 491~492,644
    rna:L7:1~170 2~21,57,142,184,273~275,369~37
    7,379~382,385~386,389,391,408,
    410,439,445~460,688~689,729,14
    83~1484,1488,1509~1510,1531,16
    36,1647,1734~1735,1772~1775
    rna:L8:5~124 1047~1049,1052,1103,1105~1107,
    1213,1228,1258,1261,1265
    rna:S1:1~2203 897~899
    12990 8rxh:L2
    (2.93Å)
    		 1155 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002915752 RF02543 Leishmania
    major
    strain
    Friedlin
    347515    		 38722744 Assembly1
    rna:L1:2~1781 2~26,29,31~34,37~42,47~50,54~6
    0,62~63,73~75,91~92,378~385,38
    8,391~393,412~414,416,421,468~
    470,570,592~593,599~609,612~62
    7,630~632,643,648,654,656~661,
    666,768~769,1025~1028,1038,104
    1~1043,1045,1059~1065,1068~107
    0,1072~1073,1146~1148,1154~115
    6,1190~1191,1208,1212~1214,121
    6~1226,1237~1241,1247,1249~125
    3,1255,1263~1264,1266,1270,127
    2~1273,1293~1296,1298,1301~130
    7,1309~1310,1322~1325,1376~137
    7,1388,1395~1396,1416~1419,142
    1,1437~1438
    rna:L3:5~216 4,43,132~133,347,977~978
    rna:L4:1~184 43~45,52~53,78~80,360~364,587~
    588,590,631,1329~1330,1332,133
    8~1340,1346~1348,1350,1371,143
    3~1435,1437,1445
    rna:L5:2~135 68~69,124~127,355~357,595,635~
    636,1429~1430,1512
    rna:L6:3~73 1441~1443,1450,1452
    rna:L7:1~170 9~10,15,632~633,784,1011~1012,
    1432~1433
    rna:S1:1~2203 101~102,119~120,437,442,452~45
    3,501~505,508~509,518,536~539,
    548~550
    rna:S2:1~76 502,531,1277,1289~1290,1313~13
    14,1360,1362,1390~1391
    rna:S3:2~76 497,511~513,1046~1048,1050,125
    7~1258,1409
    rna:S4:1~76 456~458,480~482,1191~1192,1231
    ~1232
    12991 8rxh:L3
    (2.93Å)
    		 183 N/A URS00027E5AFF N/A Leishmania
    major
    strain
    Friedlin
    347515    		 38722744 Assembly1
    rna:L1:2~1781 18~19,25,32~33,38,72~74,122~12
    5,148,151~153,170~171,202~205,
    216
    rna:L2:2~1526 18,22,25,46,182,211~213
    rna:L4:1~184 56~57,59~62
    12992 8rxh:L4
    (2.93Å)
    		 184 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002915759 RF02543 Leishmania
    major
    strain
    Friedlin
    347515    		 38722744 Assembly1
    rna:L1:2~1781 7~16,20,105~106,133,143~144,17
    0
    rna:L2:2~1526 41~43,52~54,57~60,80~82,84,89~
    94,105,107~111,116~118,121,133
    ~135,157~160,170,172~174
    rna:L3:5~216 97~99
    rna:L5:2~135 3,21~22,24,27,85,87~88,99~100,
    112~114,179~181
    rna:L6:3~73 1,23
    12993 8rxh:L5
    (2.93Å)
    		 120 N/A URS0002915757 N/A Leishmania
    major
    strain
    Friedlin
    347515    		 38722744 Assembly1
    rna:L1:2~1781 10,127~129
    rna:L2:2~1526 18,20~21,67~69,91~93,107,113
    rna:L4:1~184 2~7,40~41,45~46,102~103,105~10
    6,135
    12994 8rxh:L6
    (2.93Å)
    		 71 N/A URS00005EBAC0 N/A Leishmania
    major
    strain
    Friedlin
    347515    		 38722744 Assembly1
    rna:L1:2~1781 65~66
    rna:L2:2~1526 5~9,13~14
    rna:L4:1~184 3~4
    12995 8rxh:L7
    (2.93Å)
    		 166 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A76380 RF00002 Leishmania
    major
    strain
    Friedlin
    347515    		 38722744 Assembly1
    rna:L1:2~1781 4~21,23~37,40~41,53~54,94,103,
    108~109,114,126,139~140,150~15
    6,158~163,165~169
    rna:L2:2~1526 1~3,112,125,164,166,168
    rna:L4:1~184 9~10
    12996 8rxh:L8
    (2.93Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002915758 RF00001 Leishmania
    major
    strain
    Friedlin
    347515    		 38722744 Assembly1
    rna:L1:2~1781 81~84,88,92~93,102,104~107
    12997 8rxh:S1
    (2.93Å)
    		 1844 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000291573B RF01960 Leishmania
    major
    strain
    Friedlin
    347515    		 38722744 Assembly1
    rna:L1:2~1781 677,1218~1220
    rna:L2:2~1526 364,1160,1242,1251,1475,2064~2
    066,2075~2077,2086~2087,2149~2
    150,2160~2162,2183
    rna:S2:1~76 626,1626,2159
    rna:S3:2~76 1248,1543,1863~1864,1995~1997,
    2057
    rna:S5:1~12 626,1151,1502,1828,2054,2057,2
    158~2159,2164
    12998 8rxh:S2
    (2.93Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E264 RF00005 Leishmania
    major
    strain
    Friedlin
    347515    		 38722744 Assembly1
    rna:L2:2~1526 37~38,51~52,63,72,74~76
    rna:S1:1~2203 34~37
    rna:S5:1~12 34~37
    12999 8rxh:S3
    (2.93Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Leishmania
    major
    strain
    Friedlin
    347515    		 38722744 Assembly1
    rna:L2:2~1526 2,12~13,24~25,74~76
    rna:S1:1~2203 30~32,34,38,40~41
    rna:S5:1~12 34~37
    13000 8rxh:S4
    (2.93Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E264 RF00005 Leishmania
    major
    strain
    Friedlin
    347515    		 38722744 Assembly1
    rna:L2:2~1526 3~4,71~72,75~76
    << < 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.