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FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.
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    # PDB
    (Resolution)
    Length EC number
    & GO term
    RNAcentral Rfam Taxon PubMed ATtRACT
    motif
    Ligand &
    binding nucleotides
    12901 8rdv:D8
    (2.6Å)

    115 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Psychrobacter
    urativorans

    45610
    38355796 Assembly1
    rna:Z2:9~2868 76~79,94,96~97
    12902 8rdv:V
    (2.6Å)

    76 N/A N/A N/A Psychrobacter
    urativorans

    45610
    38355796 Assembly1
    rna:Z2:9~2868 2~3,12,74~76
    rna:Y:13~18 34,37
    rna:iN:48~1578 31~32,34,38~41
    12903 8rdv:Z2
    (2.6Å)

    2710 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02541 Psychrobacter
    urativorans

    45610
    38355796 Assembly1
    rna:D8:1~115 846~848,900,902~904
    rna:V:1~76 1894,1909,2049~2050,2234~2236,
    2238,2433~2434

    rna:iN:48~1578 1677,1688~1689,1691~1692,1818,
    1823,1832~1834,1898~1902,1905~
    1906,1933~1934,1945~1947
    12904 8rdv:iN
    (2.6Å)

    1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00177
    RF01959
    RF02542
    RF01960
    Psychrobacter
    urativorans

    45610
    38355796 Assembly1
    rna:Z2:9~2868 746,828,943,1452~1454,1463,147
    4~1475,1519~1520,1528~1529,153
    7,1539~1541,1562

    rna:V:1~76 834,1010,1383~1385,1445
    rna:Y:13~18 737,833,970,1445~1446,1448,154
    3
    12905 8rdw:D8
    (2.74Å)

    115 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Psychrobacter
    urativorans

    45610
    38355796 Assembly1
    rna:Z2:9~2868 76~79,94,96~97
    12906 8rdw:Z2
    (2.74Å)

    2729 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02541 Psychrobacter
    urativorans

    45610
    38355796 Assembly1
    rna:D8:1~115 846~849,900,902~904
    rna:iN:48~1578 1677,1688~1689,1691~1692,1818,
    1823,1832~1834,1881,1898~1902,
    1905~1906,1933~1934,1945~1947
    12907 8rdw:iN
    (2.74Å)

    1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00177
    RF01959
    RF02542
    RF01960
    Psychrobacter
    urativorans

    45610
    38355796 Assembly1
    rna:Z2:9~2868 746,828,943,1452~1454,1463,147
    4,1519~1520,1528~1529,1537~154
    1,1562
    12908 8rjb:K
    (2.69243Å)

    3543 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000A7632C RF02543 Oryctolagus
    cuniculus

    9986
    38896445
    28710774
    29872003
    34783343
    Assembly1
    rna:q:1~76 3754~3755,3769~3771,4196~4198,
    4200,4396~4397,4548

    rna:u:1~120 1736~1738,1741,1792~1796,1894,
    1909,1936,1942

    rna:v:1~156 1~22,58,146,339,341~348,350~35
    3,356~357,360,362,379~380,415~
    430,1304~1305,1333~1334,1371,2
    308~2309,2312~2313,2333~2334,2
    355,2444,2472,2487~2488,2544~2
    545,2778~2780,3890
    12909 8rjb:q
    (2.69243Å)

    76 GO:0030533 (F) triplet codon-amino aci... URS0000868530 RF00005 Sus
    scrofa

    9823
    38896445
    28710774
    29872003
    34783343
    Assembly1
    rna:K:1~5069 2~3,12,24~25,74~76
    12910 8rjb:u
    (2.69243Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000002B0D5 RF00001 Oryctolagus
    cuniculus

    9986
    38896445
    28710774
    29872003
    34783343
    Assembly1
    rna:K:1~5069 77~80,84,88,98,100~101,103~104
    12911 8rjb:v
    (2.69243Å)

    156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00004B2C76 RF00002
    RF02540
    Oryctolagus
    cuniculus

    9986
    38896445
    28710774
    29872003
    34783343
    Assembly1
    rna:K:1~5069 3~22,24~37,40,53~54,103,108,11
    0~113,115,124~125,127,136,138~
    149,151~156
    12912 8rjc:K
    (2.90061Å)

    3543 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000A7632C RF02543 Oryctolagus
    cuniculus

    9986
    38896445
    28710774
    29872003
    34783343
    Assembly1
    rna:q:1~76 3769~3771,4196~4198,4200,4396~
    4397,4547~4548

    rna:u:1~120 1736~1739,1741,1792~1796,1894,
    1909,1936,1942

    rna:v:1~156 1~22,58,146,339,342~348,350~35
    3,356~357,360,362,379~380,415~
    430,1304~1305,1333~1334,1371,2
    308~2309,2312~2313,2332~2334,2
    355,2444,2472,2487~2488,2508,2
    544~2545,2778~2780,3890
    12913 8rjc:q
    (2.90061Å)

    76 GO:0030533 (F) triplet codon-amino aci... URS0000868530 RF00005 Sus
    scrofa

    9823
    38896445
    28710774
    29872003
    34783343
    Assembly1
    rna:K:1~5069 2,12,24~25,74~76
    12914 8rjc:u
    (2.90061Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000002B0D5 RF00001 Oryctolagus
    cuniculus

    9986
    38896445
    28710774
    29872003
    34783343
    Assembly1
    rna:K:1~5069 77~80,84,88,98,100~104
    12915 8rjc:v
    (2.90061Å)

    156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00004B2C76 RF00002
    RF02540
    Oryctolagus
    cuniculus

    9986
    38896445
    28710774
    29872003
    34783343
    Assembly1
    rna:K:1~5069 3~22,24~37,40~41,53~54,103,108
    ,110~113,115,124~127,136,138~1
    49,151~156
    12916 8rjd:K
    (2.78574Å)

    3543 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000A7632C RF02543 Oryctolagus
    cuniculus

    9986
    38896445
    28710774
    29872003
    34783343
    Assembly1
    rna:q:1~76 3755,3769~3771,4196~4198,4200,
    4396~4397,4548

    rna:u:1~120 1736~1739,1741,1792~1796,1894,
    1909,1936,1942

    rna:v:1~156 1~22,58,146,339,341~348,350~35
    3,356~357,360,362,379~380,409,
    415~430,1304~1305,1333~1334,13
    71,2308~2309,2312~2313,2332~23
    34,2355,2444,2472,2487~2488,25
    08~2509,2544~2545,2778~2780,38
    90
    12917 8rjd:q
    (2.78574Å)

    76 GO:0030533 (F) triplet codon-amino aci... URS0000868530 RF00005 Sus
    scrofa

    9823
    38896445
    28710774
    29872003
    34783343
    Assembly1
    rna:K:1~5069 2~3,12~13,24~25,74~76
    12918 8rjd:u
    (2.78574Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000002B0D5 RF00001 Oryctolagus
    cuniculus

    9986
    38896445
    28710774
    29872003
    34783343
    Assembly1
    rna:K:1~5069 77~80,84,88,98,100~104
    12919 8rjd:v
    (2.78574Å)

    156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00004B2C76 RF00002
    RF02540
    Oryctolagus
    cuniculus

    9986
    38896445
    28710774
    29872003
    34783343
    Assembly1
    rna:K:1~5069 3~22,24~37,40,53~54,103,108,11
    0~113,115,124~125,127,136,138~
    149,151~156
    12920 8rl2:L5
    (2.84Å)

    3382 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02540
    RF02543
    RF02541
    Homo
    sapiens

    9606
    29872004
    M054_0.6

    1306

    769

    M329_0.6

    1303

    762

    42

    1148

    1149

    764

    870

    167

    21

    1079

    930

    1029

    1072

    1073

    s77

    1071

    819

    1373

    938

    546

    s52

    s50

    813

    936

    s59

    995

    994

    1314

    991

    1312

    1311

    1150

    123

    124

    125

    1068

    s72

    1060

    s100

    s102

    52

    533

    M227_0.6

    1384

    375

    926

    822

    1128

    988

    1321

    1083

    1081

    704

    705

    1328

    707

    1124

    987

    1126

    703

    M077_0.6

    M290_0.6

    1037

    1336

    1181

    119

    797

    796

    795

    836

    837

    791

    790

    838

    1334

    s70

    1016

    1017

    1393

    610

    1012

    1013

    1234

    1236

    1237

    763

    1231

    1232

    1233

    1335

    1331

    M109_0.6

    440

    1238

    1239

    1333

    589

    776

    s96

    s99

    M273_0.6

    1389

    902

    821

    900

    901

    906

    905

    33

    924

    s17

    853

    M044_0.6

    1245

    1183

    s62

    s61

    1227

    883

    M035_0.6

    1223

    M156_0.6

    1165

    M320_0.6

    1347

    60

    s81

    M349_0.6

    595

    175

    1026

    977

    976

    974

    852

    970

    M154_0.6

    884

    s55

    979

    M153_0.6

    183

    185

    1375

    1036

    706

    1034

    659

    1212

    M102_0.6

    1211

    1216

    1042

    986

    467

    M148_0.6

    1354

    708

    M103_0.6

    169

    91

    1127

    162

    M070_0.6

    M272_0.6

    M020_0.6

    M050_0.6

    1187

    1182

    815

    503

    727

    M347_0.6

    722

    935

    M086_0.6

    1035

    1164

    604

    1166

    606

    886

    156

    748

    749

    608

    1313

    M061_0.6

    s48

    1055

    878

    1059

    953

    952

    872

    954

    957

    1107

    1352

    774

    1215

    M104_0.6

    1173

    770

    773

    958

    1271

    1272

    1273

    779

    778

    1178

    M151_0.6

    78

    1285

    M083_0.6

    1041

    1040

    1043

    1045

    1044

    1288

    354

    1360

    684

    800

    1368

    804
    Assembly1
    rna:L8:1~156 1~22,58,146~147,339,342~348,35
    0~353,355~357,360,362,379~380,
    415~430,1304~1305,1333~1334,13
    71,2308~2309,2312~2313,2333~23
    34,2355,2444,2472,2488,2493~24
    94,2508,2778~2780,3890,4162
    12921 8rl2:L8
    (2.84Å)

    156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00002
    RF02540
    Homo
    sapiens

    9606
    29872004
    1227

    592

    s24

    993

    1215

    1352

    s37

    1238

    1178

    M085_0.6

    1389

    1360

    589

    375

    M106_0.6
    Assembly1
    rna:L5:1~5069 3~13,15~22,24~37,40~41,53~54,1
    03,108,110~113,115,125~127,136
    ,138~156
    12922 8rm5:2
    (6.9Å)

    98 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP
    N/A RF00004 Homo
    sapiens

    9606
    38778104
    504
    Assembly1
    rna:Z:29~43 33~45
    rna:6:32~106 3~14
    12923 8rm5:4
    (6.9Å)

    110 GO:0017070 (F) U6 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005687 (C) U4 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    N/A RF00015 Homo
    sapiens

    9606
    38778104
    583
    Assembly1
    rna:6:32~106 1~18,55~62
    12924 8rm5:5
    (6.9Å)

    112 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    N/A RF00020 Homo
    sapiens

    9606
    38778104
    1213

    M150_0.6

    1263

    42

    1267

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390
    Assembly1
    rna:z:-3~15 41~43
    12925 8rm5:6
    (6.9Å)

    64 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    N/A RF00026 Homo
    sapiens

    9606
    38778104
    1334

    s59

    M021_0.6
    Assembly1
    rna:2:3~184 85~88,90~95
    rna:z:-3~15 37~44
    rna:4:1~144 51~75
    12926 8rm5:Z
    (6.9Å)

    15 N/A N/A N/A Homo
    sapiens

    9606
    38778104 Assembly1
    rna:2:3~184 29~30,32~39,42~43
    12927 8rm5:z
    (6.9Å)

    18 N/A N/A N/A Homo
    sapiens

    9606
    38778104 Assembly1
    rna:5:3~117 -3~-1
    rna:6:32~106 3,5~10
    12928 8ro0:2
    (2.9Å)

    61 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP
    N/A RF00004 Caenorhabditis
    elegans

    6239
    38925148 Assembly1
    rna:6:1~90 3~12,18,20~23,26~28
    12929 8ro0:5
    (2.9Å)

    111 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    N/A RF00020 Caenorhabditis
    elegans

    6239
    38925148 Assembly1
    rna:6:1~90 45~47
    12930 8ro0:6
    (2.9Å)

    90 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    N/A RF00026 Caenorhabditis
    elegans

    6239
    38925148 Assembly1
    rna:2:3~186 45~46,48~51,75,77~78,82~90
    rna:5:3~121 61~62,64~65
    rna:In:10~28 24,36
    12931 8ro0:In
    (2.9Å)

    19 N/A N/A N/A Caenorhabditis
    elegans

    6239
    38925148 Assembly1
    rna:6:1~90 13,25
    12932 8ro1:2
    (3.0Å)

    76 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP
    N/A RF00004 Caenorhabditis
    elegans

    6239
    38925148 Assembly1
    rna:6:1~101 4~12,18,20~23,26~28
    12933 8ro1:5
    (3.0Å)

    111 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    N/A RF00020 Caenorhabditis
    elegans

    6239
    38925148 Assembly1
    rna:6:1~101 45~46
    12934 8ro1:6
    (3.0Å)

    101 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    N/A RF00026 Caenorhabditis
    elegans

    6239
    38925148 Assembly1
    rna:2:1~186 42,45~51,77,82~90
    rna:5:3~121 61~62,64~65
    rna:IN:1~51 24~25,39~40
    12935 8ro1:IN
    (3.0Å)

    33 N/A N/A N/A Caenorhabditis
    elegans

    6239
    38925148 Assembly1
    rna:6:1~101 1~2,24
    12936 8ro2:2
    (3.5Å)

    39 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP
    N/A RF00004 Homo
    sapiens

    9606
    38925148
    M068_0.6
    Assembly1
    rna:6:1~97 1,3~11,16~17,19~22,25~28
    12937 8ro2:5
    (3.5Å)

    92 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    N/A RF00020 Homo
    sapiens

    9606
    38925148
    M150_0.6

    42

    M025_0.6

    M075_0.6

    185

    s67

    M158_0.6
    Assembly1
    rna:6:1~97 42~43
    12938 8ro2:6
    (3.5Å)

    97 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    N/A RF00026 Homo
    sapiens

    9606
    38925148
    1334

    1124

    s59

    M021_0.6
    Assembly1
    rna:2:1~39 47,49~56,80,82~83,87~95,97
    rna:5:9~115 67,69~70
    rna:IN:1~154 30,35
    12939 8ro2:IN
    (3.5Å)

    41 N/A N/A N/A Homo
    sapiens

    9606
    38925148 Assembly1
    rna:6:1~97 12,17
    12940 8rpy:A
    (2.64Å)

    2900 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02541 Escherichia
    coli

    562
    38730238 Assembly1
    rna:B:1~120 861~864,915,917~918,958~959
    12941 8rpy:B
    (2.64Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Escherichia
    coli

    562
    38730238 Assembly1
    rna:A:1~2903 78~80,89~90,97,99~100
    12942 8rpz:A
    (2.44Å)

    2900 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02541 Escherichia
    coli

    562
    38730238 Assembly1
    rna:B:1~120 861~863,915,917~919,958~959
    12943 8rpz:B
    (2.44Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Escherichia
    coli

    562
    38730238 Assembly1
    rna:A:1~2903 78~81,89~90,97,99~100
    12944 8rq0:A
    (2.44Å)

    2900 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02541 Escherichia
    coli

    562
    38730238 Assembly1
    rna:B:1~120 861~863,915,917~919,958~959
    12945 8rq0:B
    (2.44Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Escherichia
    coli

    562
    38730238 Assembly1
    rna:A:1~2903 78~81,89~90,97,99~100
    12946 8rq2:A
    (2.44Å)

    2900 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02541 Escherichia
    coli

    562
    38730238 Assembly1
    rna:B:1~120 861~863,915,917~919,958~959
    12947 8rq2:B
    (2.44Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Escherichia
    coli

    562
    38730238 Assembly1
    rna:A:1~2903 78~81,89~90,97,99~100
    12948 8ruh:A
    (4.55Å)

    390 GO:0000373 (P) Group II intron splicing URS000080DF32 RF02001
    RF01998
    Oceanobacillus
    iheyensis

    182710
    38898052 Assembly1
    rna:B:-2~0 181,183~184,374~375
    12949 8rw1:1
    (3.35Å)

    75 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Saccharomyces
    cerevisiae
    S288C

    559292
    39193907 Assembly1
    rna:2:1~1798 29~32,34,38~42
    rna:3:15~40 35~37
    12950 8rw1:2
    (3.35Å)

    1798 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF01960
    RF02542
    RF01959
    RF00177
    Kluyveromyces
    lactis
    NRRL
    Y-1140

    284590
    39193907 Assembly1
    rna:3:15~40 576,903,1149,1632,1635~1638,17
    59,1766,1798

    rna:1:1~76 1000,1190,1460,1573~1575,1635
    12951 8rw1:3
    (3.35Å)

    26 N/A N/A N/A Kluyveromyces
    lactis

    28985
    39193907 Assembly1
    rna:2:1~1798 20,25~26,28~31,34~35
    rna:1:1~76 28~31
    12952 8rwg:A
    (2.46Å)

    2805 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02540
    RF02541
    RF02543
    RF00002
    Pseudomonas
    aeruginosa
    PAO1

    208964
    N/A Assembly1
    rna:B:1~1527 1678,1689~1693,1818,1823,1832,
    1834,1898~1899,1902,1905~1906,
    1933~1934,1936,1945~1947

    rna:C:1~120 849~851,903,905~907
    12953 8rwg:B
    (2.46Å)

    1527 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF01959
    RF00177
    RF02542
    RF01960
    Pseudomonas
    aeruginosa
    PAO1

    208964
    N/A Assembly1
    rna:A:1~2889 696,778,893,1401~1403,1412,141
    4,1423,1468~1469,1477~1478,148
    5,1487~1490,1511
    12954 8rwg:C
    (2.46Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00005ACE34 RF00001 Pseudomonas
    aeruginosa
    PAO1

    208964
    N/A Assembly1
    rna:A:1~2889 78~81,97,99~100
    12955 8rxh:L1
    (2.93Å)

    1677 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02543 Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L2:2~1526 39~41,69,92~93,312~313,321,327
    ~328,341,343~350,460~464,668~6
    69,674,676~685,747~749,762,818
    ,826~828,856~859,869~870,881~8
    82,911~912,916,920,922~927,929
    ~930,932~933,935~938,941~943,9
    47,951,959,964~969,972,975,988
    ~991,1006~1013,1018,1044~1046,
    1098~1099,1105~1107,1109,1173,
    1180~1182,1185~1193,1207~1209,
    1262~1267,1364~1370,1372~1373,
    1526,1533~1544,1547,1581~1601,
    1611,1613,1619,1626~1630,1632~
    1635,1649~1651,1654,1656,1658,
    1661,1666~1667,1682,1712,1730,
    1755~1756,1758,1770~1774,1776~
    1781

    rna:L3:5~216 876,889~890,906~908,1638~1639,
    1674,1710,1737,1740~1742,1746~
    1750,1763,1767~1768,1778~1780

    rna:L4:1~184 222~230,455~458,461,1250,1270,
    1288,1504,1544~1545

    rna:L5:2~135 1564,1568
    rna:L6:3~73 491~492,644
    rna:L7:1~170 2~21,57,142,184,273~275,369~37
    7,379~382,385~386,389,391,408,
    410,439,445~460,688~689,729,14
    83~1484,1488,1509~1510,1531,16
    36,1647,1734~1735,1772~1775

    rna:L8:5~124 1047~1049,1052,1103,1105~1107,
    1213,1228,1258,1261,1265

    rna:S1:1~2203 897~899
    12956 8rxh:L2
    (2.93Å)

    1155 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02543 Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L1:2~1781 2~26,29,31~34,37~42,47~50,54~6
    0,62~63,73~75,91~92,378~385,38
    8,391~393,412~414,416,421,468~
    470,570,592~593,599~609,612~62
    7,630~632,643,648,654,656~661,
    666,768~769,1025~1028,1038,104
    1~1043,1045,1059~1065,1068~107
    0,1072~1073,1146~1148,1154~115
    6,1190~1191,1208,1212~1214,121
    6~1226,1237~1241,1247,1249~125
    3,1255,1263~1264,1266,1270,127
    2~1273,1293~1296,1298,1301~130
    7,1309~1310,1322~1325,1376~137
    7,1388,1395~1396,1416~1419,142
    1,1437~1438

    rna:L3:5~216 4,43,132~133,347,977~978
    rna:L4:1~184 43~45,52~53,78~80,360~364,587~
    588,590,631,1329~1330,1332,133
    8~1340,1346~1348,1350,1371,143
    3~1435,1437,1445

    rna:L5:2~135 68~69,124~127,355~357,595,635~
    636,1429~1430,1512

    rna:L6:3~73 1441~1443,1450,1452
    rna:L7:1~170 9~10,15,632~633,784,1011~1012,
    1432~1433

    rna:S1:1~2203 101~102,119~120,437,442,452~45
    3,501~505,508~509,518,536~539,
    548~550

    rna:S2:1~76 502,531,1277,1289~1290,1313~13
    14,1360,1362,1390~1391

    rna:S3:2~76 497,511~513,1046~1048,1050,125
    7~1258,1409

    rna:S4:1~76 456~458,480~482,1191~1192,1231
    ~1232
    12957 8rxh:L3
    (2.93Å)

    183 N/A N/A N/A Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L1:2~1781 18~19,25,32~33,38,72~74,122~12
    5,148,151~153,170~171,202~205,
    216

    rna:L2:2~1526 18,22,25,46,182,211~213
    rna:L4:1~184 56~57,59~62
    12958 8rxh:L4
    (2.93Å)

    184 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02543 Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L1:2~1781 7~16,20,105~106,133,143~144,17
    0

    rna:L2:2~1526 41~43,52~54,57~60,80~82,84,89~
    94,105,107~111,116~118,121,133
    ~135,157~160,170,172~174

    rna:L3:5~216 97~99
    rna:L5:2~135 3,21~22,24,27,85,87~88,99~100,
    112~114,179~181

    rna:L6:3~73 1,23
    12959 8rxh:L5
    (2.93Å)

    120 N/A N/A N/A Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L1:2~1781 10,127~129
    rna:L2:2~1526 18,20~21,67~69,91~93,107,113
    rna:L4:1~184 2~7,40~41,45~46,102~103,105~10
    6,135
    12960 8rxh:L6
    (2.93Å)

    71 N/A N/A N/A Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L1:2~1781 65~66
    rna:L2:2~1526 5~9,13~14
    rna:L4:1~184 3~4
    12961 8rxh:L7
    (2.93Å)

    166 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00002 Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L1:2~1781 4~21,23~37,40~41,53~54,94,103,
    108~109,114,126,139~140,150~15
    6,158~163,165~169

    rna:L2:2~1526 1~3,112,125,164,166,168
    rna:L4:1~184 9~10
    12962 8rxh:L8
    (2.93Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L1:2~1781 81~84,88,92~93,102,104~107
    12963 8rxh:S1
    (2.93Å)

    1844 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF01960
    RF02542
    RF01959
    RF00177
    Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L1:2~1781 677,1218~1220
    rna:L2:2~1526 364,1160,1242,1251,1475,2064~2
    066,2075~2077,2086~2087,2149~2
    150,2160~2162,2183

    rna:S2:1~76 626,1626,2159
    rna:S3:2~76 1248,1543,1863~1864,1995~1997,
    2057

    rna:S5:1~12 626,1151,1502,1828,2054,2057,2
    158~2159,2164
    12964 8rxh:S2
    (2.93Å)

    76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L2:2~1526 37~38,51~52,63,72,74~76
    rna:S1:1~2203 34~37
    rna:S5:1~12 34~37
    12965 8rxh:S3
    (2.93Å)

    75 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L2:2~1526 2,12~13,24~25,74~76
    rna:S1:1~2203 30~32,34,38,40~41
    rna:S5:1~12 34~37
    12966 8rxh:S4
    (2.93Å)

    74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L2:2~1526 3~4,71~72,75~76
    12967 8rxh:S5
    (2.93Å)

    12 N/A URS00021ED951 N/A Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:S1:1~2203 2~3,5~10,12
    rna:S2:1~76 8~11
    rna:S3:2~76 5~7
    12968 8rxx:L1
    (2.97Å)

    1657 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02543 Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L2:2~1526 38~41,69,92~93,312~313,321,327
    ~328,341,343~350,460~464,668~6
    69,674,676~685,747~749,762,818
    ~819,826~829,856~859,869~870,8
    81~882,911~912,920,922~927,929
    ~930,932~933,935~938,941~943,9
    47,951,959,964~967,969~970,972
    ,975,988~991,1006~1013,1018,10
    44~1046,1098~1099,1105~1109,11
    73,1181~1182,1185~1193,1207~12
    09,1262,1264~1267,1364~1370,13
    72~1373,1526,1533~1544,1547,15
    81~1601,1611,1613~1614,1619,16
    26~1630,1632~1635,1649~1651,16
    54,1656~1658,1661,1666~1667,16
    82,1711~1712,1730,1755~1756,17
    58,1770~1774,1776~1781

    rna:L3:5~216 876,889~890,906~908,1638~1640,
    1710,1737,1740~1742,1746~1750,
    1763,1767~1768,1778~1779

    rna:L4:1~184 222~230,455,457~458,461,651,12
    50,1270,1504,1544~1545

    rna:L5:2~135 1564,1568~1569
    rna:L6:3~73 491~492,643~644
    rna:L7:1~170 3~21,57,142,184,273~275,369~37
    7,379~382,384~386,389,391,408,
    410,439,445~459,661,688~689,72
    9,1483~1484,1488,1509~1510,153
    1,1636,1647,1668,1734~1735,177
    2~1775

    rna:L8:5~123 1047~1050,1052,1103~1107,1213,
    1228,1258,1261,1264~1265

    rna:S1:1~2203 897~899
    12969 8rxx:L2
    (2.97Å)

    1149 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02543 Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L1:3~1781 2~26,29~34,37~42,47~49,54~63,7
    2~75,91~92,378~385,388,391~393
    ,412~416,421,468~470,570,592~5
    93,599~609,612~627,630~632,643
    ,648,654,656~661,666,768~769,1
    025~1027,1038,1041~1043,1045,1
    059~1065,1068~1070,1072~1074,1
    146~1148,1155~1156,1190~1191,1
    208,1212~1214,1216~1226,1237~1
    241,1247,1249~1253,1255,1263~1
    266,1270,1272~1273,1293~1295,1
    298,1301~1303,1305~1309,1322~1
    325,1375~1377,1388,1395~1396,1
    416~1418,1421,1437~1438

    rna:L3:5~216 4~5,42~43,132~133,347,977~978
    rna:L4:1~184 43~45,52~53,78~80,360~363,587~
    590,631,1329~1333,1338~1340,13
    46~1350,1371,1433~1435,1437,14
    45

    rna:L5:2~135 68~69,124~127,355~357,595,635~
    636,1429~1430,1512

    rna:L6:3~73 1441~1443,1450,1452
    rna:L7:1~170 9~10,15,632~633,784,1011~1012,
    1432~1433

    rna:S1:1~2203 101~102,119~120,437,442,451~45
    2,501~505,508~509,536~539,548~
    550

    rna:S3:1~76 496~498,511~513,652,1046~1048,
    1050,1258~1259,1313,1392,1409

    rna:S4:1~76 456~458,481~482,1191~1192,1231
    ~1232
    12970 8rxx:L3
    (2.97Å)

    183 N/A N/A N/A Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L1:3~1781 18~19,32~33,38,72~74,122~124,1
    48,151~153,170~171,202~205,216

    rna:L2:2~1526 17~18,22,25~26,46,182,212~213
    rna:L4:1~184 57,60~62
    12971 8rxx:L4
    (2.97Å)

    184 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02543 Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L1:3~1781 7~17,20,105~106,133,143,170
    rna:L2:2~1526 41~43,52~54,56~60,80~84,89~95,
    105,107~111,116~118,121,133~13
    5,157~160,170,172~174

    rna:L3:5~216 97~98
    rna:L5:2~135 3~4,21~22,24,27,87~88,100,112~
    113,179~181

    rna:L6:3~73 1,23
    12972 8rxx:L5
    (2.97Å)

    122 N/A N/A N/A Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L1:3~1781 10,126~130
    rna:L2:2~1526 18~21,67~69,91~93,107,113
    rna:L4:1~184 2~7,40~42,45,102~103,135
    12973 8rxx:L6
    (2.97Å)

    71 N/A N/A N/A Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L1:3~1781 64~66
    rna:L2:2~1526 5~9,14
    rna:L4:1~184 3~4
    12974 8rxx:L7
    (2.97Å)

    166 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00002 Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L1:3~1781 4~21,23~37,40~41,53~54,94,103,
    105,108~109,114,125~127,139~14
    0,149~156,158~163,165~169

    rna:L2:2~1526 1~3,112,125,164,166,168
    rna:L4:1~184 9~10
    12975 8rxx:L8
    (2.97Å)

    119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L1:3~1781 81~84,88,92,102,104~107
    12976 8rxx:S1
    (2.97Å)

    1836 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF01960
    RF02542
    RF01959
    RF00177
    Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L1:3~1781 677~678,1218~1220
    rna:L2:2~1526 364,1160,1242,1475,2064~2066,2
    075~2077,2086~2087,2149~2150,2
    159~2162,2183

    rna:S2:30~41 626,1626,2159
    rna:S3:1~76 1248,1543,1863~1864,1995~1997,
    2057

    rna:S4:1~76 1151~1152,1996
    rna:S5:1~11 626,1151,1246,1502,2054,2057~2
    058,2060,2158~2159,2164
    12977 8rxx:S2
    (2.97Å)

    12 N/A N/A N/A Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:S1:1~2203 34~37
    rna:S5:1~11 34~37
    12978 8rxx:S3
    (2.97Å)

    71 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L2:2~1526 2~3,11~13,24~25,73~76
    rna:S1:1~2203 30~32,34,38,40~41
    rna:S5:1~11 34~37
    12979 8rxx:S4
    (2.97Å)

    66 N/A N/A N/A Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:L2:2~1526 3~4,70~72,75~76
    rna:S1:1~2203 31,38
    12980 8rxx:S5
    (2.97Å)

    11 N/A N/A N/A Leishmania
    major
    strain
    Friedlin

    347515
    38722744 Assembly1
    rna:S1:1~2203 1~2,4~11
    rna:S2:30~41 8~11
    rna:S3:1~76 5~7
    12981 8s1p:A
    (1.96Å)

    2733 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02541 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168

    224308
    38811035 Assembly1
    rna:B:3~114 908~911,962~966,1004
    rna:a:1~76 2280~2282,2479~2480,2631
    12982 8s1p:B
    (1.96Å)

    112 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168

    224308
    38811035 Assembly1
    rna:A:3~2925 76~79,87,94~99
    12983 8s1p:a
    (1.96Å)

    69 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00002F180C RF00005 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168

    224308
    38811035 Assembly1
    rna:A:3~2925 74~76
    12984 8s1u:A
    (3.4Å)

    2789 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02541 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168

    224308
    38811035 Assembly1
    rna:B:3~114 908~911,962,964~966,1004
    rna:a:1~76 2280~2282,2479~2480,2631
    12985 8s1u:B
    (3.4Å)

    112 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168

    224308
    38811035 Assembly1
    rna:A:3 76~79,87,94~95,97~98
    12986 8s1u:a
    (3.4Å)

    69 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00002F180C RF00005 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168

    224308
    38811035 Assembly1
    rna:A:3 74~76
    12987 8s6w:A
    (5.3Å)

    36 N/A N/A N/A synthetic
    construct

    32630
    N/A Assembly1
    rna:B:1~36 13~14,25~26,36
    rna:C:1~36 1~23
    rna:D:1~36 23~36
    12988 8s6w:B
    (5.3Å)

    36 N/A N/A N/A synthetic
    construct

    32630
    N/A Assembly1
    rna:A:1~36 1~2,13~14,25~26
    rna:C:1~36 23~36
    rna:D:1~36 1~23
    12989 8s6w:C
    (5.3Å)

    36 N/A N/A N/A synthetic
    construct

    32630
    N/A Assembly1
    rna:A:1~36 1~20,22~23,35~36
    rna:B:1~36 21~34
    rna:D:1~36 34~35
    12990 8s6w:D
    (5.3Å)

    36 N/A N/A N/A synthetic
    construct

    32630
    N/A Assembly1
    rna:A:1~36 21~34
    rna:B:1~36 1~20,22~23,35~36
    rna:C:1~36 34~35
    12991 8s8d:1
    (3.45Å)

    75 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Saccharomyces
    cerevisiae
    S288C

    559292
    39193907 Assembly1
    rna:2:1~1798 29~32,34,38~42
    rna:3:15~40 35~37
    12992 8s8d:2
    (3.45Å)

    1798 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF01960
    RF02542
    RF01959
    RF00177
    Kluyveromyces
    lactis
    NRRL
    Y-1140

    284590
    39193907 Assembly1
    rna:3:15~40 576,903,1149,1632,1635~1637,17
    59,1798

    rna:1:1~76 1000,1190,1460,1573~1575,1635
    12993 8s8d:3
    (3.45Å)

    26 N/A N/A N/A Kluyveromyces
    lactis

    28985
    39193907 Assembly1
    rna:2:1~1798 19~20,25~26,28~31,35
    rna:1:1~76 28~31
    12994 8s8e:1
    (3.85Å)

    75 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Saccharomyces
    cerevisiae
    S288C

    559292
    39193907 Assembly1
    rna:2:1~1798 30~31,34,38,40~42
    rna:3:15~40 35~37
    12995 8s8e:2
    (3.85Å)

    1798 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF01960
    RF02542
    RF01959
    RF00177
    Kluyveromyces
    lactis
    NRRL
    Y-1140

    284590
    39193907 Assembly1
    rna:3:15~40 576,903,1149,1632,1635~1636,16
    38,1759,1798

    rna:1:1~76 1000,1190,1460,1573~1575,1635
    12996 8s8e:3
    (3.85Å)

    26 N/A N/A N/A Kluyveromyces
    lactis

    28985
    39193907 Assembly1
    rna:2:1~1798 19~20,25~26,28~31,34~35
    rna:1:1~76 28~31
    12997 8s8f:1
    (3.95Å)

    75 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Saccharomyces
    cerevisiae
    S288C

    559292
    39193907 Assembly1
    rna:2:1~1798 30~31,34,38,40,42
    rna:3:15~40 34~37
    12998 8s8f:2
    (3.95Å)

    1789 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF01960
    RF02542
    RF01959
    RF00177
    Kluyveromyces
    lactis
    NRRL
    Y-1140

    284590
    39193907 Assembly1
    rna:3:15~40 576,903,1149,1632,1635~1636,17
    59,1766

    rna:1:1~76 1000,1190,1460,1573~1575,1635
    12999 8s8f:3
    (3.95Å)

    26 N/A N/A N/A Kluyveromyces
    lactis

    28985
    39193907 Assembly1
    rna:2:1~1798 25~26,28~32,34~35
    rna:1:1~76 28~31
    13000 8s8g:1
    (4.0Å)

    75 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Saccharomyces
    cerevisiae
    S288C

    559292
    39193907 Assembly1
    rna:2:1~1798 29~31,34,38~42
    rna:3:15~40 34~37
    << < 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 > >>
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    Reference:
  • Chengxin Zhang, P. Lydia Freddolino (2023) FURNA: a database for function annotations of RNA structures, bioRxiv 2023.12.19.572314.
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