SEQ2FUN

FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    13301 8ury:B
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 39117885 Assembly1
    rna:7:1~47 35,37
    rna:D:1~1534 30~32,37~38
    rna:a:1~2903 2,13,24,75~76
    13302 8ury:D
    (3.1Å)
    		 1524 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF02542
    RF01960    		 Escherichia
    coli
    562    		 39117885 Assembly1
    rna:7:1~47 926,1196,1395,1397,1401,1403,1
    493,1499~1501,1505
    rna:B:1~76 790,1339~1341
    rna:a:1~2903 1408~1409,1475,1492,1494,1517
    13303 8ury:a
    (3.1Å)
    		 2880 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Escherichia
    coli
    562    		 39117885 Assembly1
    rna:A:1~76 1851~1852,2111~2112,2168,2180~
    2181,2394~2395,2421~2422
    rna:B:1~76 1907,1922~1923,2255,2493~2494,
    2602
    rna:D:1~1534 1689,1912~1913,1916,1920
    rna:d:1~120 861~864,915,917~919,958,2340
    13304 8ury:d
    (3.1Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    562    		 39117885 Assembly1
    rna:a:1~2903 41,78~81,89~90,96~97,99~101
    13305 8ut0:2
    (3.22Å)
    		 1771 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF01960
    RF02542
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 39900920
    101

    441

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:A:3~3396 628~629,913,971~973,1644~1646,
    1655~1657,1667,1746~1747,1757~
    1759,1780
    rna:m:1~76 577~578,1274,1756
    rna:n:1~76 1001,1191,1462,1575~1577,1637
    rna:D:1~10 577,904,1150,1634,1637,1639,17
    55~1756,1761
    13306 8ut0:A
    (3.22Å)
    		 3184 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02540
    RF02541
    RF02543    		 Saccharomyces
    cerevisiae
    4932    		 39900920
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:2:1~1799 846~848,1935~1936,2125,2207,22
    55~2259,2262~2263,2290~2292,23
    02~2304
    rna:B:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1202~1203
    rna:C:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1398~139
    9,1419~1420,1441,1530,1558,161
    8~1619,1830~1832,2386~2387,258
    5,2994~2995
    rna:m:1~76 2256,2839,2851,2876,2922~2924,
    2952~2954,2971
    rna:n:1~76 2251~2252,2265~2266,2619~2621,
    2808,2819~2820,2970~2971
    13307 8ut0:B
    (3.22Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Saccharomyces
    cerevisiae
    4932    		 39900920 Assembly1
    rna:A:3~3396 79~82,86,90,100,102~104
    13308 8ut0:C
    (3.22Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00002 Saccharomyces
    cerevisiae
    4932    		 39900920
    441    		 Assembly1
    rna:A:3~3396 1,3~22,24~37,40~41,53~54,104,1
    09,112~115,125~126,129,137~157
    13309 8ut0:D
    (3.22Å)
    		 10 N/A N/A N/A Saccharomyces
    cerevisiae
    4932    		 39900920 Assembly1
    rna:2:1~1799 1,3~10
    rna:m:1~76 7~9
    rna:n:1~76 4~6
    13310 8ut0:m
    (3.22Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Saccharomyces
    cerevisiae
    4932    		 39900920 Assembly1
    rna:2:1~1799 34~37
    rna:A:3~3396 37~38,63,74~76
    rna:D:1~10 34~37
    13311 8ut0:n
    (3.22Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00021ED942 RF00005 Saccharomyces
    cerevisiae
    4932    		 39900920 Assembly1
    rna:2:1~1799 30~31,34,38~41
    rna:A:3~3396 11~12,24~25,74~76
    rna:D:1~10 34~37
    13312 8uti:A
    (3.13Å)
    		 3044 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02540
    RF02541
    RF02543    		 Saccharomyces
    cerevisiae
    4932    		 39900920
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:B:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1203
    rna:C:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,398,404~
    419,656~657,691,1394~1395,1398
    ~1399,1419~1420,1441,1530,1558
    ,1584,1618~1619,1830~1832,2386
    ~2387,2585,2994~2995
    rna:m:1~76 2256,2839,2851,2876,2922~2924,
    2952~2954,2971
    rna:n:1~76 2251,2266,2619~2620,2820,2971
    rna:E:1~1799 846~848,1935~1936,2125,2207,22
    55~2259,2262~2263,2290~2292,23
    02~2303,2330
    13313 8uti:B
    (3.13Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Saccharomyces
    cerevisiae
    4932    		 39900920 Assembly1
    rna:A:3~3396 79~82,86,90,100,102~104
    13314 8uti:C
    (3.13Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00002 Saccharomyces
    cerevisiae
    4932    		 39900920
    441    		 Assembly1
    rna:A:3~3396 1,3~22,24~37,40~41,53~54,104,1
    09,113~115,126,129,136~157
    13315 8uti:D
    (3.13Å)
    		 10 N/A N/A N/A Saccharomyces
    cerevisiae
    4932    		 39900920 Assembly1
    rna:m:1~76 7~9
    rna:n:1~76 4~6
    rna:E:1~1799 1,3~9
    13316 8uti:E
    (3.13Å)
    		 1597 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF01960
    RF02542
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 39900920
    101

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:A:3~3396 628,913,971~973,1644~1646,1655
    ~1657,1667,1746~1747,1756~1759
    ,1780
    rna:D:1~10 577,904,1150,1637~1638,1640,17
    55~1756,1761
    rna:m:1~76 577,1274,1756
    rna:n:1~76 1001,1191,1462,1575~1577,1637
    13317 8uti:m
    (3.13Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Saccharomyces
    cerevisiae
    4932    		 39900920 Assembly1
    rna:A:3~3396 37~38,52,63,74~76
    rna:D:1~10 34~37
    rna:E:1~1799 34~37
    13318 8uti:n
    (3.13Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002CB170 RF00005 Saccharomyces
    cerevisiae
    4932    		 39900920 Assembly1
    rna:A:3~3396 12,24,74~76
    rna:D:1~10 34~37
    rna:E:1~1799 30~31,34,38~41
    13319 8uu4:A
    (3.0Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Listeria
    innocua
    1642    		 38407413 Assembly1
    rna:a:4~1548 1750,1752~1753,1865,1870,1881,
    1945~1949,1952~1953,1980~1983,
    1992~1993
    rna:B:2~115 908~910,962,964~965
    13320 8uu4:B
    (3.0Å)
    		 114 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002311A24 RF00001 Listeria
    innocua
    1642    		 38407413 Assembly1
    rna:A:3~2930 76~78,95,97~98
    13321 8uu4:a
    (3.0Å)
    		 1516 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF01959
    RF00177
    RF02542
    RF01960    		 Listeria
    innocua
    1642    		 38407413 Assembly1
    rna:A:3~2930 710,792,908,1414~1416,1425~142
    7,1436,1482,1491~1492,1501~150
    3,1525
    13322 8uu5:A
    (3.0Å)
    		 2902 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Listeria
    innocua
    1642    		 38407413 Assembly1
    rna:a:4~1548 1749~1750,1752~1753,1870,1879,
    1881,1945~1946,1948~1949,1952~
    1953,1980~1983,1992~1993
    rna:x:1~76 1883~1884,1925~1926,2145,2202,
    2427,2454~2455,2465
    rna:B:2~115 908~910,964~965
    13323 8uu5:B
    (3.0Å)
    		 114 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002311A24 RF00001 Listeria
    innocua
    1642    		 38407413 Assembly1
    rna:A:3~2930 76~78,95,97~98
    13324 8uu5:a
    (3.0Å)
    		 1523 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF01959
    RF00177
    RF02542
    RF01960    		 Listeria
    innocua
    1642    		 38407413 Assembly1
    rna:x:1~76 701,975,1236,1345~1347
    rna:w:4~17 701,1541~1548
    rna:A:3~2930 710,792,908,1414~1416,1425~142
    7,1436,1482,1491~1492,1501~150
    3,1525
    13325 8uu5:w
    (3.0Å)
    		 14 N/A N/A N/A Escherichia
    phage
    T4
    2681598    		 38407413 Assembly1
    rna:a:4~1548 4~10,13~14
    rna:x:1~76 14~16
    13326 8uu5:x
    (3.0Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 38407413 Assembly1
    rna:a:4~1548 30~31,34,37,40~41
    rna:w:4~17 34~37
    rna:A:3~2930 3,19,56,70~71,75~76
    13327 8uu6:A
    (3.3Å)
    		 2904 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Listeria
    innocua
    1642    		 38407413 Assembly1
    rna:a:4~1548 1945~1947,1949,1952~1953,1980~
    1981,1992~1994
    rna:x:1~76 1884,1925~1926,2145,2202,2427,
    2454~2455,2465
    rna:B:2~115 908~910,962,965
    13328 8uu6:B
    (3.3Å)
    		 114 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002311A24 RF00001 Listeria
    innocua
    1642    		 38407413 Assembly1
    rna:A:2~2930 76~78,95,98
    13329 8uu6:a
    (3.3Å)
    		 1516 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF01959
    RF00177
    RF02542
    RF01960    		 Listeria
    innocua
    1642    		 38407413 Assembly1
    rna:x:1~76 798,975,1236,1345~1347
    rna:w:11~16 701,796~797,935,1407~1408,1506
    rna:A:2~2930 1414~1416,1425,1491~1492,1501~
    1503,1525
    13330 8uu6:x
    (3.3Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 38407413 Assembly1
    rna:a:4~1548 30~31,34~35,38,40~42
    rna:w:11~16 34~37
    rna:A:2~2930 3,19,56,70~71,75~76
    13331 8uu7:A
    (3.2Å)
    		 2909 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Listeria
    innocua
    1642    		 38407413 Assembly1
    rna:a:4~1548 1750,1752,1945~1946,1949,1952~
    1953,1955,1980~1982,1992~1993
    rna:y:1~76 1884,1918,2145,2202,2427,2454~
    2455
    rna:B:2~115 908~910,962,965
    13332 8uu7:B
    (3.2Å)
    		 114 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002311A24 RF00001 Listeria
    innocua
    1642    		 38407413 Assembly1
    rna:A:2~2930 76~78,95,97~98
    13333 8uu7:a
    (3.2Å)
    		 1516 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF01959
    RF00177
    RF02542
    RF01960    		 Listeria
    innocua
    1642    		 38407413 Assembly1
    rna:A:2~2930 710,799,1414~1415,1425~1426,14
    36,1482,1491~1492,1501~1503,15
    25
    13334 8uu7:y
    (3.2Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 38407413 Assembly1
    rna:A:2~2930 3,19,55~56,70~71,76
    13335 8uu8:A
    (3.1Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Listeria
    innocua
    1642    		 38407413 Assembly1
    rna:a:4~1548 1749~1750,1752~1753,1880~1881,
    1945~1946,1949,1952~1953,1980~
    1981,1992~1993
    rna:x:1~76 1884,1925~1926,2145,2202,2427,
    2454~2455,2465
    rna:B:2~115 908~910,962,964~965,1004
    13336 8uu8:B
    (3.1Å)
    		 114 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002311A24 RF00001 Listeria
    innocua
    1642    		 38407413 Assembly1
    rna:A:2~2930 76~78,94~95,97~98
    13337 8uu8:a
    (3.1Å)
    		 1516 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF01959
    RF00177
    RF02542
    RF01960    		 Listeria
    innocua
    1642    		 38407413 Assembly1
    rna:x:1~76 701~702,1236,1345~1347
    rna:w:11~19 701,797,1407~1408,1542
    rna:A:2~2930 710,1414~1415,1425,1436,1482~1
    483,1491~1492,1501~1503,1525
    13338 8uu8:x
    (3.1Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 38407413 Assembly1
    rna:a:4~1548 30~31,37~38,40~41
    rna:w:11~19 34~37
    rna:A:2~2930 3,19,56,70~71,75~76
    13339 8uu9:A
    (3.1Å)
    		 2899 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Listeria
    innocua
    1642    		 38407413 Assembly1
    rna:a:5~1548 1879,1945~1946,1948~1949,1952~
    1953,1980~1982,1992~1993
    rna:x:1~76 1883~1884,1925,2202,2427~2428,
    2454~2455,2465
    rna:B:2~115 908~910,962,964~965
    13340 8uu9:B
    (3.1Å)
    		 114 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002311A24 RF00001 Listeria
    innocua
    1642    		 38407413 Assembly1
    rna:A:3~2930 76~78,95,97~98
    13341 8uu9:a
    (3.1Å)
    		 1515 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF01959
    RF00177
    RF02542
    RF01960    		 Listeria
    innocua
    1642    		 38407413 Assembly1
    rna:x:1~76 975,1236,1345~1347
    rna:w:11~18 935,1407,1513
    rna:A:3~2930 710,1414~1416,1425~1426,1491~1
    492,1501~1503,1525
    13342 8uu9:x
    (3.1Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 38407413 Assembly1
    rna:a:5~1548 30~32,34,40~41
    rna:w:11~18 34~37
    rna:A:3~2930 3,19,56,70~71,75~76
    13343 8uua:A
    (2.7Å)
    		 2894 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Listeria
    innocua
    1642    		 38407413 Assembly1
    rna:B:2~115 908~910,962,964~966
    13344 8uua:B
    (2.7Å)
    		 114 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002311A24 RF00001 Listeria
    innocua
    1642    		 38407413 Assembly1
    rna:A:2~2930 76~79,95,97~98
    13345 8uvr:1A
    (2.6Å)
    		 2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Thermus
    thermophilus
    HB8
    300852    		 38165935 Assembly1
    rna:1B:1~120 861~864,915,917~919,958
    rna:1a:4~1533 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1916,1919~1920,
    1947~1949,1959~1961,2863~2864
    rna:1w:1~76 882,896~897,1913,2482~2483,250
    6~2507,2553~2555,2583~2585,260
    2
    rna:1x:2~76 1907~1909,1922~1924,2251~2253,
    2439,2450~2451,2601~2602
    rna:1y:1~76 1851,2112,2169,2394~2395,2421~
    2422,2432
    13346 8uvr:1B
    (2.6Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Thermus
    thermophilus
    HB8
    300852    		 38165935 Assembly1
    rna:1A:6~2897 78~81,90,97~98,100~102
    13347 8uvr:1a
    (2.6Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177
    RF01959
    RF02542
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 38165935 Assembly1
    rna:1A:6~2897 702,783~784,899,1407~1409,1418
    ,1429,1442A,1473~1475,1483~148
    4,1494~1496,1517
    rna:1v:12~24 530,926,1196,1397,1400~1402,14
    92~1493,1498,1503,1505,1507
    rna:1w:1~76 530~531,1054,1493
    rna:1x:2~76 790,966,1229~1230,1338~1340,14
    00
    13348 8uvr:1v
    (2.6Å)
    		 13 N/A N/A N/A Tequatrovirus
    T4
    10665    		 38165935 Assembly1
    rna:1a:4~1533 13,15~24
    rna:1w:1~76 19~21
    rna:1x:2~76 16~18
    13349 8uvr:1w
    (2.6Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 38165935 Assembly1
    rna:1A:6~2897 19,37~38,56,64,74~76
    rna:1a:4~1533 34~37
    rna:1v:12~24 34~37
    13350 8uvr:1x
    (2.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 38165935 Assembly1
    rna:1A:6~2897 11~13,24~25,74~76
    rna:1a:4~1533 29~32,34,38~41
    rna:1v:12~24 34~37
    13351 8uvr:1y
    (2.6Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 38165935 Assembly1
    rna:1A:6~2897 19,56,71,76
    13352 8uvr:2A
    (2.6Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Thermus
    thermophilus
    HB8
    300852    		 38165935 Assembly2
    rna:2B:1~120 861~863,915,917~919,958
    rna:2a:4~1532 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1916,1919~1920,
    1947~1949,1959~1961,2864
    rna:2w:2~76 897,1913,2482~2483,2506~2507,2
    553~2555,2583~2585,2602
    rna:2x:2~76 1907~1909,1922~1924,2251~2253,
    2450~2451,2601~2602
    rna:2y:1~76 1851,2112,2169,2394~2395,2421~
    2422,2432
    13353 8uvr:2B
    (2.6Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Thermus
    thermophilus
    HB8
    300852    		 38165935 Assembly2
    rna:2A:6~2897 78~81,90,97~98,100~101
    13354 8uvr:2a
    (2.6Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177
    RF01959
    RF02542
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 38165935 Assembly2
    rna:2A:6~2897 702,783~784,899~900,1407~1409,
    1418,1429~1430,1442A,1473~1475
    ,1483~1484,1493~1496,1517
    rna:2v:12~24 530,926,1196,1397,1400~1402,14
    92~1493,1498,1503,1505,1507
    rna:2w:2~76 530,1054,1493
    rna:2x:2~76 790,966,1229~1230,1338~1340,14
    00
    rna:2y:1~76 693~694
    13355 8uvr:2v
    (2.6Å)
    		 13 N/A N/A N/A Tequatrovirus
    T4
    10665    		 38165935 Assembly2
    rna:2a:4~1532 13,15~24
    rna:2w:2~76 19~21
    rna:2x:2~76 16~18
    13356 8uvr:2w
    (2.6Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 38165935 Assembly2
    rna:2A:6~2897 37~38,56,64,74~76
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    13357 8uvr:2x
    (2.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 38165935 Assembly2
    rna:2A:6~2897 11~13,24~25,74~76
    rna:2a:4~1532 30~32,34,38,40~41
    rna:2v:12~24 34~37
    13358 8uvr:2y
    (2.6Å)
    		 73 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 38165935 Assembly2
    rna:2A:6~2897 19,56,71~72,76
    13359 8uvs:1A
    (2.75Å)
    		 2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Thermus
    thermophilus
    HB8
    300852    		 38165935 Assembly1
    rna:1B:1~120 861~864,915,917~919,958
    rna:1a:4~1533 1701~1704,1832,1836~1837,1846,
    1848,1912~1916,1919~1920,1947~
    1948,1959~1961,2863~2864
    rna:1w:1~76 881~882,897,1913,2482~2483,250
    6~2507,2553~2555,2573,2583~258
    5,2602
    rna:1x:2~76 1907~1909,1922~1924,2251~2253,
    2450~2451,2601~2602
    rna:1y:1~76 1851,2112,2169,2394~2395,2421~
    2422
    13360 8uvs:1B
    (2.75Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Thermus
    thermophilus
    HB8
    300852    		 38165935 Assembly1
    rna:1A:6~2897 78~81,90,97~98,100~102
    13361 8uvs:1a
    (2.75Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177
    RF01959
    RF02542
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 38165935 Assembly1
    rna:1A:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1473~1475,1483
    ~1484,1494~1496,1517
    rna:1v:12~24 530,926,1196,1397,1400~1402,14
    92~1493,1498,1503,1505,1507
    rna:1w:1~76 530~531,1054,1493
    rna:1x:2~76 790,966,1229~1230,1338~1340,14
    00
    13362 8uvs:1v
    (2.75Å)
    		 13 N/A N/A N/A Tequatrovirus
    T4
    10665    		 38165935 Assembly1
    rna:1a:4~1533 12~13,15~24
    rna:1w:1~76 19~22
    rna:1x:2~76 16~18
    13363 8uvs:1w
    (2.75Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 38165935 Assembly1
    rna:1A:6~2897 19,37~38,56,64,74~76
    rna:1a:4~1533 34~37
    rna:1v:12~24 34~37
    13364 8uvs:1x
    (2.75Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 38165935 Assembly1
    rna:1A:6~2897 11~13,24~25,74~76
    rna:1a:4~1533 30~32,34,38,40~41
    rna:1v:12~24 34~37
    13365 8uvs:1y
    (2.75Å)
    		 74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 38165935 Assembly1
    rna:1A:6~2897 19,56,71~72,76
    13366 8uvs:2A
    (2.75Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Thermus
    thermophilus
    HB8
    300852    		 38165935 Assembly2
    rna:2B:1~120 861~863,915,917~919,958
    rna:2a:4~1532 1700~1704,1832,1836~1837,1846,
    1848,1912~1916,1919~1920,1947~
    1949,1959~1961,2864
    rna:2w:2~76 881,896~897,1913,2482~2483,250
    6~2507,2553~2555,2583~2585,260
    2
    rna:2x:2~76 1907~1909,1922~1924,2251~2253,
    2255,2439,2450~2451,2601~2602
    rna:2y:1~76 1851,2112,2169,2394~2395,2421~
    2422
    13367 8uvs:2B
    (2.75Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Thermus
    thermophilus
    HB8
    300852    		 38165935 Assembly2
    rna:2A:6~2897 78~81,90,97~98,100~101
    13368 8uvs:2a
    (2.75Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177
    RF01959
    RF02542
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 38165935 Assembly2
    rna:2A:6~2897 702,783~784,899~900,1407~1409,
    1418,1429~1430,1442A,1473~1475
    ,1483~1484,1493~1496,1517
    rna:2v:12~24 530,926,1196,1397,1400~1402,14
    92~1493,1498,1503,1505,1507
    rna:2w:2~76 530,1054,1493
    rna:2x:2~76 790,966,1229~1230,1338~1340,14
    00
    13369 8uvs:2v
    (2.75Å)
    		 13 N/A N/A N/A Tequatrovirus
    T4
    10665    		 38165935 Assembly2
    rna:2a:4~1532 13,15~24
    rna:2w:2~76 19~21
    rna:2x:2~76 16~18
    13370 8uvs:2w
    (2.75Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 38165935 Assembly2
    rna:2A:6~2897 19,37~38,55~56,64,74~76
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    13371 8uvs:2x
    (2.75Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 38165935 Assembly2
    rna:2A:6~2897 11~13,24~25,74~76
    rna:2a:4~1532 30~32,34,38~41
    rna:2v:12~24 34~37
    13372 8uvs:2y
    (2.75Å)
    		 73 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 38165935 Assembly2
    rna:2A:6~2897 19,56,71~72,76
    13373 8v83:1
    (2.53Å)
    		 2015 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02543 Saccharomyces
    cerevisiae
    BY4741
    1247190    		 38632236 Assembly1
    rna:2:1~158 1,3~23,59,143,330~337,339~342,
    344~346,349,351,368~369,404~42
    0,422,656~657,691,1394~1395,13
    99,1418~1420,1441,2386,2997
    rna:6:1~232 1,3
    13374 8v83:2
    (2.53Å)
    		 150 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00002 Saccharomyces
    cerevisiae
    BY4741
    1247190    		 38632236 Assembly1
    rna:1:1~3396 1~22,24~37,40~41,53,104,117,13
    6~150,152~157
    13375 8v83:6
    (2.53Å)
    		 58 N/A N/A N/A Saccharomyces
    cerevisiae
    BY4741
    1247190    		 38632236 Assembly1
    rna:2:1~158 1,230
    13376 8v84:1
    (2.7Å)
    		 1970 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02543 Saccharomyces
    cerevisiae
    BY4741
    1247190    		 38632236 Assembly1
    rna:2:1~158 1,3~23,59,143,330~337,339~342,
    345~346,349,351,368~369,404~42
    0,422,656~657,691,1394~1395,13
    99,1418~1420,1441,2386,2997
    rna:6:1~232 1,3
    13377 8v84:2
    (2.7Å)
    		 150 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00002 Saccharomyces
    cerevisiae
    BY4741
    1247190    		 38632236 Assembly1
    rna:1:1~3396 1~22,24~37,40~41,53,104,117,13
    6~150,152~156
    13378 8v84:6
    (2.7Å)
    		 58 N/A N/A N/A Saccharomyces
    cerevisiae
    BY4741
    1247190    		 38632236 Assembly1
    rna:2:1~158 1,230
    13379 8v87:1
    (2.66Å)
    		 2489 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02543 Saccharomyces
    cerevisiae
    BY4741
    1247190    		 38632236 Assembly1
    rna:2:1~158 1,3~23,59,143,330~337,339~342,
    345~346,349,351,368~369,404~41
    9,656~657,691,1394~1395,1399,1
    418~1420,1441,1530,1558,1584,1
    618~1619,1831,2386,2994~2995
    rna:6:1~232 1,3,1570
    13380 8v87:2
    (2.66Å)
    		 155 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    BY4741
    1247190    		 38632236 Assembly1
    rna:1:1~3396 1~22,24~37,40~41,52~53,104,109
    ,114~115,128~129,136~150,152~1
    57
    13381 8v87:6
    (2.66Å)
    		 87 N/A N/A N/A Saccharomyces
    cerevisiae
    BY4741
    1247190    		 38632236 Assembly1
    rna:1:1~3396 229,232
    rna:2:1~158 1,230
    13382 8v9j:A
    (3.1Å)
    		 3073 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003A7753 RF02541 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 38355796 Assembly1
    rna:a:7~1517 1918~1919,1921~1922,2063,2065,
    2136~2137,2140,2143~2144,2171~
    2173,2183~2185
    rna:y:1~76 2067~2068,2115~2117,2335,2391,
    2618~2619,2645~2646,2656
    rna:B:1~118 976~978,1030,1032~1033
    13383 8v9j:B
    (3.1Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ACC0A RF00001 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 38355796 Assembly1
    rna:A:2~3120 79~81,94~98
    13384 8v9j:a
    (3.1Å)
    		 1511 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001AF2F7 RF00177
    RF01959
    RF02542
    RF01960    		 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 38355796 Assembly1
    rna:y:1~76 948,1211,1320~1322
    rna:A:2~3120 682,1390~1391,1401~1402,1412,1
    458~1459,1467~1468,1477~1479,1
    501
    13385 8v9j:y
    (3.1Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 38355796 Assembly1
    rna:a:7~1517 30~32,34,41
    rna:v:1~3 35~37
    rna:A:2~3120 3~4,19,56,70~71,75~76
    13386 8v9k:A
    (3.1Å)
    		 3081 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003A7753 RF02541 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 38355796 Assembly1
    rna:a:7~1517 1907,1918,1921,2063,2065,2136~
    2137,2140,2143~2144,2171~2173,
    2183~2184
    rna:y:1~76 2067~2068,2116~2117,2335,2391,
    2618~2619,2645~2646,2656
    rna:B:1~118 976~978,1032~1033
    13387 8v9k:B
    (3.1Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ACC0A RF00001 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 38355796 Assembly1
    rna:A:2~3120 79~81,94~98
    13388 8v9k:a
    (3.1Å)
    		 1511 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001AF2F7 RF00177
    RF01959
    RF02542
    RF01960    		 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 38355796 Assembly1
    rna:y:1~76 948,1210,1320~1322
    rna:A:2~3120 682,1390~1391,1401~1402,1412,1
    458~1459,1467~1468,1476~1479,1
    501
    13389 8v9k:y
    (3.1Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 38355796 Assembly1
    rna:a:7~1517 30~31,34,40~41
    rna:v:1~3 34~37
    rna:A:2~3120 3~4,19,56,70~71,75~76
    13390 8v9l:A
    (3.0Å)
    		 3073 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003A7753 RF02541 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 38355796 Assembly1
    rna:a:7~1517 1919,1921~1922,2063~2065,2136~
    2137,2139~2140,2143~2144,2171~
    2173,2183~2184
    rna:y:1~76 2067~2068,2115~2117,2335,2391,
    2618~2619,2645~2646,2656
    rna:B:1~118 976~978,1030,1032~1033
    13391 8v9l:B
    (3.0Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ACC0A RF00001 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 38355796 Assembly1
    rna:A:2~3120 79~81,95~98
    13392 8v9l:a
    (3.0Å)
    		 1511 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001AF2F7 RF00177
    RF01959
    RF02542
    RF01960    		 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 38355796 Assembly1
    rna:v:1~4 673,908
    rna:y:1~76 769,948,1210~1211,1320~1322
    rna:A:2~3120 682,1390~1392,1401~1402,1412,1
    458~1459,1467~1468,1477~1479,1
    501
    13393 8v9l:y
    (3.0Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 38355796 Assembly1
    rna:a:7~1517 30~32,34,37~38,40~41
    rna:v:1~4 35~37
    rna:A:2~3120 3~4,19,56,70~71,75~76
    13394 8vaj:E
    (3.45Å)
    		 12 N/A N/A N/A Homo
    sapiens
    9606    		 39368090
    399    		 Assembly1
    rna:F:5~16 2~9
    13395 8vaj:F
    (3.45Å)
    		 12 N/A N/A N/A Homo
    sapiens
    9606    		 39368090 Assembly1
    rna:E:1~14 6~13
    13396 8vaw:A
    (1.25Å)
    		 15 N/A N/A N/A synthetic
    construct
    32630    		 38579124 Assembly1
    rna:B:1~15 2~15
    13397 8vaw:B
    (1.25Å)
    		 15 N/A N/A N/A synthetic
    construct
    32630    		 38579124 Assembly1
    rna:A:1~15 2~15
    13398 8vax:AAA
    (1.417Å)
    		 15 N/A N/A N/A synthetic
    construct
    32630    		 38579124 Assembly1
    rna:BBB:1~15 2~15
    13399 8vax:BBB
    (1.417Å)
    		 15 N/A N/A N/A synthetic
    construct
    32630    		 38579124 Assembly1
    rna:AAA:1~15 2~15
    13400 8vfs:A
    (2.7Å)
    		 27 N/A N/A N/A Providencia
    stuartii
    588    		 38992441 Assembly1
    rna:B:1~27 1~5,7~27
    << < 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.