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FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.
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    # PDB
    (Resolution)
    Length EC number
    & GO term
    RNAcentral Rfam Taxon PubMed ATtRACT
    motif
    Ligand &
    binding nucleotides
    13601 8y39:A
    (3.6Å)

    2885 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02541 Staphylococcus
    aureus

    1280
    38992047 Assembly1
    rna:B:1~115 906~908,962~963,1002
    rna:a:5~1552 1745,1747~1748,1859,1874~1875,
    1974~1977,1986
    13602 8y39:B
    (3.6Å)

    115 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Staphylococcus
    aureus

    1280
    38992047 Assembly1
    rna:A:3~2920 76~78,87,94,96~97
    13603 8y39:a
    (3.6Å)

    1479 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0002311997 RF01959
    RF00177
    RF02542
    RF01960
    Staphylococcus
    aureus

    1280
    38992047 Assembly1
    rna:A:3~2920 710,908,1428,1430,1439~1440,14
    85,1494
    13604 8y6o:A
    (3.38Å)

    13 N/A N/A N/A Homo
    sapiens

    9606
    38484052 Assembly1
    rna:P:1~133 3~11
    13605 8y6o:J
    (3.38Å)

    109 GO:0030624 (F) U6atac snRNA binding
    GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0005690 (C) U4atac snRNP
    N/A RF00618 Homo
    sapiens

    9606
    38484052
    M031_0.6

    M347_0.6

    s0

    1195

    s79

    s55

    655

    M227_0.6

    399

    81

    119
    Assembly1
    rna:K:23~67 3~21,59~65
    13606 8y6o:K
    (3.38Å)

    44 GO:0030622 (F) U4atac snRNA binding
    GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0005691 (C) U6atac snRNP
    N/A RF00619 Homo
    sapiens

    9606
    38484052 Assembly1
    rna:J:1~130 23~48
    13607 8y6o:P
    (3.38Å)

    124 GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0005692 (C) U11 snRNP
    N/A RF00548 Homo
    sapiens

    9606
    38484052
    M150_0.6

    M158_0.6

    M025_0.6

    M075_0.6

    660
    Assembly1
    rna:A:-1~11 1~7,61~62,75~77
    13608 8y7e:A
    (4.66Å)

    30 N/A N/A N/A Homo
    sapiens

    9606
    38484052
    605

    1129

    596

    609

    332

    M149_0.6

    726

    775

    1074

    798

    1039

    1018

    M012_0.6

    1015

    1094

    1096

    1159

    1158

    772

    465

    611

    1098

    1135

    s95

    725

    765

    1069

    1286

    1061

    1063

    1065

    s101

    M232_0.6

    1106

    1243

    1242

    683

    720

    721

    686

    1108
    Assembly1
    rna:H:14~84 193~202,204~206
    13609 8y7e:H
    (4.66Å)

    50 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005693 (C) U12 snRNP
    N/A RF00007 Homo
    sapiens

    9606
    38484052 Assembly1
    rna:A:193~222 16~28
    13610 8ydb:C
    (3.4Å)

    60 N/A N/A N/A Selenomonas
    sp.

    2053611
    39047725 Assembly1
    rna:T:22~53 9,11~13,16~19,21~25,27~31
    13611 8ydb:N
    (3.4Å)

    11 N/A N/A N/A Selenomonas
    sp.

    2053611
    39047725 Assembly1
    rna:T:22~53 9~17
    13612 8ydb:T
    (3.4Å)

    32 N/A N/A N/A Selenomonas
    sp.

    2053611
    39047725 Assembly1
    rna:C:1~60 22~26,28~32,34~37,40~42,44
    rna:N:9~19 45~53
    13613 8ydc:A
    (2.89Å)

    57 EC:3.1.-.-
    GO:0004540 (F) RNA nuclease activity
    N/A RF03152 synthetic
    construct

    32630
    39103372 Assembly1
    rna:B:1~14 24~28,31~32,34,44~55
    13614 8ydc:B
    (2.89Å)

    14 N/A N/A N/A synthetic
    construct

    32630
    39103372 Assembly1
    rna:A:-1~55 1~14
    13615 8yeo:C
    (3.44Å)

    60 N/A N/A N/A Selenomonas
    sp.

    2053611
    39047725 Assembly1
    rna:T:6~53 9,11~13,16~19,21~25,27~31,33~3
    7,39~41,43
    13616 8yeo:N
    (3.44Å)

    11 N/A N/A N/A Selenomonas
    sp.

    2053611
    39047725 Assembly1
    rna:T:6~53 9~17
    13617 8yeo:T
    (3.44Å)

    48 N/A N/A N/A Selenomonas
    sp.

    2053611
    39047725 Assembly1
    rna:C:1~60 12~14,16~20,22~26,28~32,34~37,
    40~42,44

    rna:N:9~19 45~53
    13618 8yhd:M
    (2.93Å)

    53 N/A N/A N/A metagenome
    256318
    39143216 Assembly1
    rna:N:3~37 1~4,6~10,12~16,18~22,24~28,30~
    34
    13619 8yhd:N
    (2.93Å)

    35 N/A N/A N/A metagenome
    256318
    39143216 Assembly1
    rna:M:-9~44 3~22,24~31,33~36
    13620 8yhe:M
    (3.07Å)

    46 N/A N/A N/A metagenome
    256318
    39143216 Assembly1
    rna:N:9~38 1~4,6~10,12~16,18~22,24~28
    13621 8yhe:N
    (3.07Å)

    30 N/A N/A N/A metagenome
    256318
    39143216 Assembly1
    rna:M:-8~37 9~25,27~31,33~36
    13622 8yld:2
    (3.9Å)

    1771 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF01960
    RF02542
    RF01959
    RF00177
    Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:A:3~3396 628~629,913,972~973,1645,1655~
    1657,1746~1747,1756~1759,1780

    rna:s:1~76 1274,1756
    rna:t:1~76 1001,1191,1462~1463,1575~1577
    13623 8yld:A
    (3.9Å)

    3193 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02540
    RF02541
    RF02543
    Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:2:1~1799 846~848,2125,2205,2207,2255~22
    56,2258~2259,2262~2263,2290~22
    93,2302~2304

    rna:B:1~121 996~998,1054~1055,1171,1197,12
    03

    rna:C:1~158 3~23,59,143,330~337,340~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1398~139
    9,1419,1442,1530,1558,1571,158
    5,1617~1618,1830~1832,2386~238
    7,2585,2994~2995

    rna:s:1~76 2256,2875,2924,2952~2953
    rna:t:1~76 2454,2484,2764~2765,2793~2794
    13624 8yld:B
    (3.9Å)

    121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:A:3~3396 79~81,86,90,100,102
    13625 8yld:C
    (3.9Å)

    158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00002 Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:A:3~3396 1~22,24~37,40,53~54,104,109,11
    2~115,126~127,129,136~137,139~
    152,154~157
    13626 8yld:s
    (3.9Å)

    75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00021ED942 RF00005 Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:2:1~1799 34,36~37
    rna:A:3~3396 37~38,75~76
    13627 8yld:t
    (3.9Å)

    75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00021ED942 RF00005 Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:2:1~1799 30~31,34,38~42
    rna:A:3~3396 19,56,72,75~76
    13628 8ylr:2
    (3.9Å)

    1771 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF01960
    RF02542
    RF01959
    RF00177
    Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:A:3~3396 628~629,913,972~973,995,1644~1
    647,1655,1657,1667,1746~1747,1
    756~1758,1780

    rna:t:1~76 1274,1637
    rna:u:1~75 1191,1462~1463,1576~1577
    13629 8ylr:A
    (3.9Å)

    3192 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02540
    RF02541
    RF02543
    Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:2:1~1799 846~848,1935,2124~2125,2196,22
    06~2207,2255~2259,2262~2263,22
    90~2292,2302~2303

    rna:B:1~121 996~999,1054~1055,1171,1197,12
    03

    rna:C:1~158 3~23,59,143~144,330~337,339~34
    2,345~346,349,351,368~369,404~
    419,656~657,691,1395,1398~1399
    ,1419~1420,1442,1530,1558,1585
    ,1618,1830~1832,2386,2585,2994
    ~2995

    rna:t:1~76 2821,2862~2863,2875~2876,2942,
    2953,2971
    13630 8ylr:B
    (3.9Å)

    121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:A:3~3396 79~81,86,90,100,102~104
    13631 8ylr:C
    (3.9Å)

    158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00002 Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:A:3~3396 1~22,24~37,40,53~54,104,106,10
    9,113~115,118,126,129,136~152,
    154~157
    13632 8ylr:t
    (3.9Å)

    75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00021ED942 RF00005 Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:A:3~3396 75~76
    13633 8ylr:u
    (3.9Å)

    74 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:2:1~1799 30,32,34,41
    13634 8yno:A
    (1.3Å)

    12 N/A N/A N/A synthetic
    construct

    32630
    39231537 Assembly1
    rna:B:1~12 1~12
    13635 8yno:B
    (1.3Å)

    12 N/A N/A N/A synthetic
    construct

    32630
    39231537 Assembly1
    rna:A:1~12 1~12
    13636 8ynp:A
    (1.4Å)

    12 N/A N/A N/A synthetic
    construct

    32630
    39231537 Assembly1
    rna:B:1~12 1~12
    13637 8ynp:B
    (1.4Å)

    12 N/A N/A N/A synthetic
    construct

    32630
    39231537 Assembly1
    rna:A:1~12 1~12
    13638 8yoo:L5
    (2.0Å)

    3670 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02543 Homo
    sapiens

    9606
    38942792
    M054_0.6

    1306

    769

    706

    1303

    762

    42

    1148

    1149

    764

    870

    167

    21

    1079

    930

    1029

    1075

    1072

    1073

    s77

    1071

    819

    1373

    938

    546

    s52

    s51

    s50

    931

    813

    936

    s59

    995

    994

    595

    1314

    991

    1312

    1311

    1028

    1150

    673

    123

    124

    125

    1068

    s72

    1060

    s100

    s102

    52

    533

    M227_0.6

    1384

    375

    926

    822

    1128

    988

    1321

    708

    704

    705

    1328

    707

    1124

    987

    1126

    703

    M077_0.6

    1237

    83

    1181

    797

    796

    795

    836

    837

    791

    790

    838

    1334

    s70

    1016

    1017

    1393

    610

    1012

    1013

    1236

    M290_0.6

    763

    1231

    1232

    1233

    1335

    s17

    M109_0.6

    1336

    1331

    1239

    1333

    589

    776

    M273_0.6

    s99

    1389

    902

    821

    900

    901

    906

    905

    33

    s48

    853

    924

    M044_0.6

    1245

    s62

    s96

    1227

    883

    M035_0.6

    1223

    M156_0.6

    604

    M320_0.6

    1347

    60

    s81

    M349_0.6

    1083

    175

    1026

    100

    s61

    977

    976

    974

    852

    970

    M154_0.6

    884

    s55

    979

    M153_0.6

    183

    1238

    185

    1375

    1036

    503

    1034

    1035

    1212

    M102_0.6

    1211

    1216

    1042

    986

    467

    M148_0.6

    1354

    M103_0.6

    169

    91

    1127

    162

    M070_0.6

    M272_0.6

    M020_0.6

    M050_0.6

    1187

    1182

    815

    1037

    727

    M347_0.6

    722

    935

    M086_0.6

    1164

    1165

    1166

    606

    886

    156

    748

    749

    608

    M061_0.6

    958

    1055

    878

    879

    1059

    953

    952

    872

    954

    957

    1107

    1352

    774

    1215

    M104_0.6

    1173

    770

    773

    1183

    1271

    1272

    1273

    779

    778

    1178

    M151_0.6

    78

    1285

    M083_0.6

    1041

    1040

    1043

    1045

    1044

    1288

    354

    688

    1360

    684

    800

    1368
    Assembly1
    rna:L7:1~120 1736~1738,1741,1792~1796,1894,
    1909,1936,1942

    rna:L8:1~156 1~22,58,146,193,339,341~348,35
    0~353,355~357,360,362,379~380,
    415~430,1304~1305,1333~1334,13
    71,2308~2309,2312,2332~2334,23
    55,2444,2472,2493~2494,2508,25
    44,2778~2780,3890

    rna:S2:1~1869 1563~1565,2867~2868,2884~2885,
    3629,3695,3699~3700,3709~3710,
    3759~3763,3766~3767,3794~3796,
    3806~3808
    13639 8yoo:L7
    (2.0Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Homo
    sapiens

    9606
    38942792
    931

    1290

    s51

    879
    Assembly1
    rna:L5:1~5069 77~80,84,88,98,100~101,103
    13640 8yoo:L8
    (2.0Å)

    156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00002
    RF02540
    Homo
    sapiens

    9606
    38942792
    1227

    592

    s24

    993

    1215

    1352

    s37

    1238

    1178

    M085_0.6

    1389

    1360

    589

    375

    M106_0.6
    Assembly1
    rna:L5:1~5069 3~13,15~22,24~37,40~41,53~54,6
    8,103,108,110~113,115,124~127,
    136,138~149,151~156
    13641 8yoo:S2
    (2.0Å)

    1719 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF01960
    RF02542
    RF01959
    RF00177
    Homo
    sapiens

    9606
    38942792
    1303

    1263

    872

    1149

    1267

    764

    954

    692

    1079

    1075

    1072

    1073

    819

    346

    546

    1378

    930

    936

    935

    M296_0.6

    1314

    M141_0.6

    1068

    s72

    M147_0.6

    1060

    s102

    1386

    M016_0.6

    s48

    926

    822

    1128

    1323

    988

    595

    1327

    707

    986

    796

    836

    762

    790

    838

    1124

    1017

    1393

    1392

    1390

    1236

    1335

    1334

    M109_0.6

    1238

    M273_0.6

    s14

    445

    s99

    1311

    105

    902

    900

    821

    788

    1333

    924

    1244

    s62

    s96

    M074_0.6

    335

    60

    1167

    977

    976

    974

    970

    509

    1037

    1035

    1213

    756

    639

    M148_0.6

    786

    1355

    M065_0.6

    93

    167

    M070_0.6

    813

    M050_0.6

    1188

    1022

    1187

    1029

    815

    727

    722

    883

    604

    606

    884

    749

    779

    608

    996

    M037_0.6

    1055

    878

    1059

    952

    1195

    43

    870

    1380

    325

    758

    770

    610

    1274

    1042

    M127_0.6

    s24

    s61

    804
    Assembly1
    rna:L5:1~5069 368,677~678,970,1028~1029,1051
    ~1052,1180,1708~1710,1719~1721
    ,1731,1815~1816,1824~1828,1849
    13642 8yop:L5
    (2.2Å)

    3771 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02543 Homo
    sapiens

    9606
    38942792
    M054_0.6

    1306

    769

    706

    1303

    762

    763

    1148

    1149

    764

    870

    167

    21

    1079

    930

    1029

    1075

    1072

    1073

    M104_0.6

    1071

    819

    1373

    938

    546

    s52

    s51

    s50

    931

    813

    936

    s59

    995

    994

    595

    1314

    991

    1312

    1311

    1028

    1150

    673

    123

    124

    125

    1068

    1017

    1060

    s100

    s102

    52

    533

    M227_0.6

    1384

    375

    926

    822

    1128

    988

    1321

    708

    704

    705

    1328

    707

    1124

    987

    1126

    703

    M077_0.6

    1237

    83

    1181

    797

    796

    795

    836

    837

    791

    727

    838

    1334

    s70

    1016

    s72

    1393

    610

    1012

    1013

    1236

    M290_0.6

    1231

    1232

    1233

    1335

    s17

    M109_0.6

    1336

    1331

    1239

    1333

    589

    M273_0.6

    s99

    1389

    902

    821

    900

    901

    906

    905

    33

    s48

    853

    M102_0.6

    924

    M044_0.6

    1245

    s62

    s96

    1227

    883

    M035_0.6

    1223

    M156_0.6

    604

    M320_0.6

    1347

    60

    s81

    M349_0.6

    1083

    175

    100

    42

    s61

    977

    976

    974

    852

    970

    M154_0.6

    884

    s55

    979

    M153_0.6

    183

    1238

    185

    1375

    1036

    503

    1034

    1035

    1212

    1043

    1211

    1216

    1042

    986

    467

    M148_0.6

    1354

    M103_0.6

    169

    91

    1127

    162

    M070_0.6

    1026

    M020_0.6

    M050_0.6

    1187

    1182

    815

    1037

    1107

    M347_0.6

    722

    935

    M086_0.6

    1164

    1165

    1166

    606

    886

    156

    748

    749

    608

    s77

    M061_0.6

    958

    1055

    878

    879

    1059

    953

    952

    872

    954

    957

    M272_0.6

    1352

    774

    1215

    776

    1173

    770

    773

    1183

    1271

    1272

    1273

    779

    778

    1178

    M151_0.6

    78

    1285

    M083_0.6

    1041

    1040

    1045

    1044

    790

    1288

    354

    688

    1360

    684

    800

    1368

    804
    Assembly1
    rna:L7:1~120 1736~1738,1741,1792~1796,1894,
    1909,1936,1942

    rna:L8:1~156 1~22,58,146,193,339,342~348,35
    0~353,356~357,360,362,379~380,
    415~430,1304~1305,1333~1334,13
    71,2308~2309,2312~2313,2332~23
    34,2355,2444,2472,2488,2493~24
    94,2508,2544,2778~2780,3890

    rna:S2:1~1869 1563~1564,2867,2884~2885,3628~
    3629,3695,3700,3711,3759~3763,
    3766~3767,3794~3796,3806~3808
    13643 8yop:L7
    (2.2Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Homo
    sapiens

    9606
    38942792
    931

    1290

    s51

    879
    Assembly1
    rna:L5:1~5069 77~80,84,88,98,100~101,103~104
    13644 8yop:L8
    (2.2Å)

    156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00002
    RF02540
    Homo
    sapiens

    9606
    38942792
    1227

    592

    s24

    993

    1215

    1352

    s37

    1238

    1178

    M085_0.6

    1389

    1360

    589

    375

    M106_0.6
    Assembly1
    rna:L5:1~5069 3~22,24~37,40~41,53~54,68,103,
    108,110~113,115,124,126~127,13
    6,138~149,151~156
    13645 8yop:S2
    (2.2Å)

    1740 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00021ED8E3 RF01960
    RF02542
    RF01959
    RF00177
    Homo
    sapiens

    9606
    38942792
    1303

    1263

    872

    1149

    1267

    764

    954

    957

    692

    1079

    1075

    1072

    1073

    819

    346

    546

    1378

    930

    936

    935

    M296_0.6

    1314

    M141_0.6

    1068

    s72

    M147_0.6

    1060

    s102

    1384

    1386

    M016_0.6

    s48

    926

    822

    1128

    1323

    988

    595

    1327

    707

    986

    796

    836

    762

    790

    838

    1124

    1017

    1393

    1392

    1390

    1236

    1335

    1334

    M109_0.6

    1238

    M273_0.6

    s14

    445

    s99

    1311

    105

    902

    900

    905

    821

    788

    1333

    924

    1244

    s62

    s96

    M074_0.6

    335

    60

    1167

    977

    976

    974

    852

    970

    509

    1037

    1035

    1213

    756

    639

    M148_0.6

    786

    1355

    M065_0.6

    93

    167

    M070_0.6

    813

    M050_0.6

    1188

    1022

    1187

    1029

    815

    727

    722

    883

    604

    606

    884

    749

    779

    608

    996

    M037_0.6

    1055

    878

    1059

    952

    1195

    43

    870

    1380

    325

    758

    770

    610

    1274

    1042

    M127_0.6

    s24

    s61

    804
    Assembly1
    rna:L5:1~5069 368,677~678,970,1028~1029,1052
    ,1180,1708~1710,1719~1721,1731
    ,1815~1816,1824~1828,1849
    13646 8yuo:A
    (2.25Å)

    1519 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00177
    RF01959
    RF02542
    RF01960
    Escherichia
    coli

    562
    39300229 Assembly1
    rna:a:1~2903 702,784,899,1407~1409,1418~142
    0,1429,1473~1475,1483~1484,149
    4~1496,1517

    rna:W:25~35 693,926,1196,1397,1400~1402,14
    92~1493,1498

    rna:X:1~76 530,1054,1493
    rna:V:1~76 790,966,1229,1338~1341,1400
    13647 8yuo:V
    (2.25Å)

    77 N/A N/A N/A Pseudomonas
    putida
    NBRC
    14164

    1211579
    39300229 Assembly1
    rna:A:2~1534 29~32,34,38,40~41
    rna:a:1~2903 74~76
    rna:W:25~35 34~38
    13648 8yuo:W
    (2.25Å)

    11 N/A N/A N/A Escherichia
    coli

    562
    39300229 Assembly1
    rna:A:2~1534 25,27~32,35
    rna:X:1~76 31~34
    rna:V:1~76 27~30
    13649 8yuo:X
    (2.25Å)

    77 N/A N/A N/A Pseudomonas
    putida
    NBRC
    14164

    1211579
    39300229 Assembly1
    rna:A:2~1534 34~37
    rna:a:1~2903 19~20,37~38,52,56,63,74~76
    rna:W:25~35 34~37
    13650 8yuo:a
    (2.25Å)

    2753 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02540
    RF02541
    RF02543
    RF00002
    Escherichia
    coli

    562
    39300229 Assembly1
    rna:A:2~1534 1689,1700~1704,1832,1837,1846,
    1848,1912~1916,1919~1920,1947~
    1950,1959~1961

    rna:b:1~119 861~863,915,917~919,958,2340
    rna:X:1~76 882~883,896,1913,2470,2482,250
    6~2507,2555,2583~2584

    rna:V:1~76 2251~2253,2450~2451,2602
    13651 8yuo:b
    (2.25Å)

    119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Escherichia
    coli

    562
    39300229 Assembly1
    rna:a:1~2903 41,78~81,89,96~97,99~100
    13652 8yup:A
    (2.39Å)

    1519 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00177
    RF01959
    RF02542
    RF01960
    Escherichia
    coli

    562
    N/A Assembly1
    rna:a:1~2903 702,784,899,1407~1409,1418,142
    0,1429,1473~1475,1483~1484,149
    4~1496,1517

    rna:V:1~76 790,966,1229,1338~1340,1400
    rna:W:14~25 693,926,1397,1400~1402,1492~14
    93,1498

    rna:X:1~76 530~531,1054,1493
    13653 8yup:V
    (2.39Å)

    76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    BW25113

    679895
    N/A Assembly1
    rna:A:2~1534 31~33,35,39,41~42
    rna:a:1~2903 12~13,25~26,74~76
    rna:W:14~25 35~38
    13654 8yup:W
    (2.39Å)

    12 N/A N/A N/A Escherichia
    coli

    562
    N/A Assembly1
    rna:A:2~1534 14,16~21,23~24
    rna:V:1~76 17~19
    rna:X:1~76 20~23
    13655 8yup:X
    (2.39Å)

    77 N/A N/A N/A Pseudomonas
    putida
    NBRC
    14164

    1211579
    N/A Assembly1
    rna:A:2~1534 34~37
    rna:a:1~2903 19~20,37~38,52,56,63,74~76
    rna:W:14~25 34~37
    13656 8yup:a
    (2.39Å)

    2753 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02540
    RF02541
    RF02543
    RF00002
    Escherichia
    coli

    562
    N/A Assembly1
    rna:A:2~1534 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1948,1950,1959~
    1961

    rna:b:1~119 861~863,915,917~919,958,2339~2
    340

    rna:V:1~76 1907~1908,1922~1923,2064,2251~
    2253,2450~2451,2602

    rna:X:1~76 882,896,1913,2470,2482,2506~25
    07,2553~2555,2583~2585,2602
    13657 8yup:b
    (2.39Å)

    119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Escherichia
    coli

    562
    N/A Assembly1
    rna:a:1~2903 41,78~81,89,96~97,99~100
    13658 8yuq:A
    (2.41Å)

    1519 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00177
    RF01959
    RF02542
    RF01960
    Escherichia
    coli

    562
    39300229 Assembly1
    rna:a:1~2903 702,784,899~900,1407~1409,1418
    ,1420,1429,1473~1475,1483~1484
    ,1494~1496,1517

    rna:V:1~76 790,966,1229~1230,1338~1341,14
    00

    rna:W:14~25 693,926,1196,1397,1400~1402,14
    92~1493,1498

    rna:X:1~76 530,1054,1196,1493
    13659 8yuq:V
    (2.41Å)

    76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    BW25113

    679895
    39300229 Assembly1
    rna:A:2~1534 31~33,35,39~42
    rna:a:1~2903 11~13,25~26,74~76
    rna:W:14~25 35~38
    13660 8yuq:W
    (2.41Å)

    12 N/A N/A N/A Escherichia
    coli

    562
    39300229 Assembly1
    rna:A:2~1534 14,17~21,23~24
    rna:V:1~76 17~19
    rna:X:1~76 20~22,24
    13661 8yuq:X
    (2.41Å)

    77 N/A N/A N/A Pseudomonas
    putida
    NBRC
    14164

    1211579
    39300229 Assembly1
    rna:A:2~1534 34~37
    rna:a:1~2903 19~20,37~38,52~53,56,63,74~76
    rna:W:14~25 34~37
    13662 8yuq:a
    (2.41Å)

    2753 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02540
    RF02541
    RF02543
    RF00002
    Escherichia
    coli

    562
    39300229 Assembly1
    rna:A:2~1534 1700~1704,1832,1836~1837,1846,
    1848,1912~1916,1919~1920,1947~
    1948,1950,1959~1961

    rna:b:1~119 861~864,915,917~919,958
    rna:V:1~76 1907~1909,1922~1923,2251~2253,
    2450~2451,2602

    rna:X:1~76 882~883,896,1913,2470,2482~248
    3,2506~2507,2553~2555,2583~258
    5,2602
    13663 8yuq:b
    (2.41Å)

    119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Escherichia
    coli

    562
    39300229 Assembly1
    rna:a:1~2903 78~81,89,96~97,99~100
    13664 8yur:A
    (2.47Å)

    1519 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00177
    RF01959
    RF02542
    RF01960
    Escherichia
    coli

    562
    39300229 Assembly1
    rna:a:1~2903 702,784,899,1407~1409,1418~141
    9,1429,1473~1475,1483~1484,149
    3~1496,1517

    rna:V:1~76 790,966,1229~1230,1338~1340,14
    00

    rna:W:14~25 693,926,1196,1397,1400~1402,14
    92~1493,1498

    rna:X:1~76 530~531,1054,1493
    13665 8yur:V
    (2.47Å)

    76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    BW25113

    679895
    39300229 Assembly1
    rna:A:2~1534 31~33,35,39~42
    rna:a:1~2903 11~12,24~26,74~76
    rna:W:14~25 35~38
    13666 8yur:W
    (2.47Å)

    12 N/A N/A N/A Escherichia
    coli

    562
    39300229 Assembly1
    rna:A:2~1534 14,17~21,23~24
    rna:V:1~76 17~19
    rna:X:1~76 20~23
    13667 8yur:X
    (2.47Å)

    77 N/A N/A N/A Pseudomonas
    putida
    NBRC
    14164

    1211579
    39300229 Assembly1
    rna:A:2~1534 34~37
    rna:a:1~2903 19~20,37~38,52,56,63,74~76
    rna:W:14~25 34~37
    13668 8yur:a
    (2.47Å)

    2753 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02540
    RF02541
    RF02543
    RF00002
    Escherichia
    coli

    562
    39300229 Assembly1
    rna:A:2~1534 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1916,1919~1920,
    1947~1949,1959~1961

    rna:b:1~119 861~864,915,917~919,958
    rna:V:1~76 1907~1909,1922~1924,2064,2251~
    2253,2450~2451,2602

    rna:X:1~76 882~883,896,1913,2470,2482,250
    6~2507,2553,2555,2583~2585,260
    2
    13669 8yur:b
    (2.47Å)

    119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Escherichia
    coli

    562
    39300229 Assembly1
    rna:a:1~2903 78~81,89,96~97,99~100
    13670 8yus:A
    (2.43Å)

    1519 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00177
    RF01959
    RF02542
    RF01960
    Escherichia
    coli

    562
    39300229 Assembly1
    rna:a:1~2903 702,784,899,1407~1409,1418,142
    0,1429,1473~1475,1483~1484,149
    3~1496,1517

    rna:V:1~76 790,966,1229~1230,1338~1340,14
    00

    rna:W:14~25 693,789,926,1196,1397,1400~140
    2,1492~1493,1498

    rna:X:1~76 530~531,1054,1493
    13671 8yus:V
    (2.43Å)

    76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    BW25113

    679895
    39300229 Assembly1
    rna:A:2~1534 31~33,35,39,41~42
    rna:a:1~2903 11~12,25~26,74~76
    rna:W:14~25 35~38
    13672 8yus:W
    (2.43Å)

    12 N/A N/A N/A Escherichia
    coli

    562
    39300229 Assembly1
    rna:A:2~1534 14~15,17~21,23~24
    rna:V:1~76 17~19
    rna:X:1~76 20~24
    13673 8yus:X
    (2.43Å)

    77 N/A N/A N/A Pseudomonas
    putida
    NBRC
    14164

    1211579
    39300229 Assembly1
    rna:A:2~1534 34~37
    rna:a:1~2903 19~20,37~38,52,56,63,74~76
    rna:W:14~25 34~37
    13674 8yus:a
    (2.43Å)

    2753 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02540
    RF02541
    RF02543
    RF00002
    Escherichia
    coli

    562
    39300229 Assembly1
    rna:A:2~1534 1700~1704,1832,1837,1846,1848,
    1912~1916,1919~1920,1947~1948,
    1950,1959~1961

    rna:b:1~119 861~863,915,917~919,958,2340
    rna:V:1~76 1907~1909,1922~1923,2251~2253,
    2450~2451,2602

    rna:X:1~76 882~883,896,1913,2470,2482~248
    3,2506~2507,2553~2555,2583~258
    5
    13675 8yus:b
    (2.43Å)

    119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Escherichia
    coli

    562
    39300229 Assembly1
    rna:a:1~2903 41,78~81,89,96~97,99~100
    13676 8z4j:M
    (2.97Å)

    38 N/A N/A N/A metagenome
    256318
    39143216 Assembly1
    rna:N:-16~37 1~4,6~10,12~16,18~22,24~28
    13677 8z4j:N
    (2.97Å)

    34 N/A N/A N/A metagenome
    256318
    39143216 Assembly1
    rna:M:-9~29 9~13,15~25,27~31,33~36
    13678 8z4l:M
    (2.85Å)

    49 N/A N/A N/A metagenome
    256318
    39143216 Assembly1
    rna:N:-16~37 1~4,6~10,12~16,18~22,24~28,30~
    34
    13679 8z4l:N
    (2.85Å)

    40 N/A N/A N/A metagenome
    256318
    39143216 Assembly1
    rna:M:-9~40 3~7,9~13,15~25,27~31,33~36
    13680 8z70:2
    (3.2Å)

    1771 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF01960
    RF02542
    RF01959
    RF00177
    Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:s:1~77 577,1274,1756
    rna:t:1~76 1001,1462~1463,1576~1577,1637
    rna:A:3~3396 320,628~629,891,913,971~972,16
    44~1645,1655~1657,1667,1746~17
    47,1757~1759,1780
    13681 8z70:A
    (3.2Å)

    3187 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02540
    RF02541
    RF02543
    Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:2:1~1799 846~848,1918,1935~1936,2125,22
    05~2207,2255,2261~2262,2290~22
    92,2302~2304

    rna:t:1~76 2265,2406,2619~2620,2623,2819~
    2820

    rna:B:1~121 996~998,1054~1055,1171,1197,12
    03

    rna:C:1~158 3~23,59,143~144,330~337,340~34
    1,345~346,349,351,368~369,404~
    419,656~657,691,1394~1395,1398
    ~1399,1419,1441,1530,1558,1584
    ~1585,1617~1618,1830~1832,2386
    ,2585,2994~2995
    13682 8z70:B
    (3.2Å)

    121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:A:3~3396 79~81,86,90,100,102~103
    13683 8z70:C
    (3.2Å)

    158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00002 Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:A:3~3396 1~22,24~37,40~41,53~54,104,109
    ,113~115,125~126,129,138~152,1
    54~155,157
    13684 8z70:s
    (3.2Å)

    76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:2:1~1799 35~36,38~39
    rna:A:3~3396 19,57
    13685 8z70:t
    (3.2Å)

    75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00021ED942 RF00005 Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:2:1~1799 30~31,34,38~41
    rna:A:3~3396 12,74~76
    13686 8z71:2
    (3.6Å)

    1771 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF01960
    RF02542
    RF01959
    RF00177
    Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:s:1~77 577,1274,1756
    rna:t:1~76 1001,1462~1463,1576~1577,1637
    rna:A:3~3396 320,628~629,891,913,971~972,16
    44~1645,1655~1657,1667,1746~17
    47,1757~1759,1780
    13687 8z71:A
    (3.6Å)

    3187 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF02540
    RF02541
    RF02543
    Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:2:1~1799 846~848,1918,1935~1936,2125,22
    05~2207,2255,2261~2262,2290~22
    92,2302~2304

    rna:t:1~76 2265,2406,2619~2620,2623,2819~
    2820

    rna:B:1~121 996~998,1054~1055,1171,1197,12
    03

    rna:C:1~158 3~23,59,143~144,330~337,340~34
    1,345~346,349,351,368~369,404~
    419,656~657,691,1394~1395,1398
    ~1399,1419,1441,1530,1558,1584
    ~1585,1617~1618,1830~1832,2386
    ,2585,2994~2995
    13688 8z71:B
    (3.6Å)

    121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00001 Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:A:3~3396 79~81,86,90,100,102~103
    13689 8z71:C
    (3.6Å)

    158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    N/A RF00002 Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:A:3~3396 1~22,24~37,40~41,53~54,104,109
    ,113~115,125~126,129,138~152,1
    54~155,157
    13690 8z71:s
    (3.6Å)

    76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Oryctolagus
    cuniculus

    9986
    N/A Assembly1
    rna:2:1~1799 35~36,38~39
    rna:A:3~3396 19,57
    13691 8z71:t
    (3.6Å)

    75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00021ED942 RF00005 Saccharomyces
    cerevisiae
    S288C

    559292
    N/A Assembly1
    rna:2:1~1799 30~31,34,38~41
    rna:A:3~3396 12,74~76
    13692 8z8x:D
    (3.06Å)

    18 N/A N/A N/A Thogoto
    virus
    (isolate
    SiAr
    126)

    126796
    38816392 Assembly1
    rna:E:1~17 11~18
    13693 8z8x:E
    (3.06Å)

    17 N/A N/A N/A Thogoto
    virus
    (isolate
    SiAr
    126)

    126796
    38816392 Assembly1
    rna:D:1~18 1~9
    13694 8z90:D
    (2.87Å)

    18 N/A N/A N/A Thogoto
    virus
    (isolate
    SiAr
    126)

    126796
    38816392 Assembly1
    rna:E:1~17 11~18
    13695 8z90:E
    (2.87Å)

    17 N/A N/A N/A Thogoto
    virus
    (isolate
    SiAr
    126)

    126796
    38816392 Assembly1
    rna:D:1~18 1~9
    13696 8z97:F
    (2.65Å)

    13 N/A N/A N/A Thogoto
    virus
    (isolate
    SiAr
    126)

    126796
    38816392 Assembly1
    rna:G:2 8~17
    13697 8z99:M
    (3.2Å)

    54 N/A N/A N/A metagenome
    256318
    39143216 Assembly1
    rna:N:-16~37 1~4,6~10,12~16,18~22,24~28,30~
    34,36~40
    13698 8z99:N
    (3.2Å)

    46 N/A N/A N/A metagenome
    256318
    39143216 Assembly1
    rna:M:-9~45 -3~1,3~7,9~13,15~31,33~36
    13699 8z9c:M
    (3.01Å)

    48 N/A N/A N/A metagenome
    256318
    39143216 Assembly1
    rna:N:-16~37 1~4,6~10,12~16,18~22,24~28,30~
    34
    13700 8z9c:N
    (3.01Å)

    41 N/A N/A N/A metagenome
    256318
    39143216 Assembly1
    rna:M:-9~39 3~31,33~36
    << < 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 > >>
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    Reference:
  • Chengxin Zhang, P. Lydia Freddolino (2023) FURNA: a database for function annotations of RNA structures, bioRxiv 2023.12.19.572314.
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