SEQ2FUN

FURNA
Download all results in tab-seperated text for 16611 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    13801 8y0x:S2
    (3.3Å)
    		 1739 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005A14E2 RF01960 Homo
    sapiens
    9606    		 38698775
    1303

    1263

    872

    1149

    1267

    764

    43

    957

    692

    1079

    1075

    1072

    1073

    819

    346

    546

    1378

    930

    936

    935

    M296_0.6

    1314

    M141_0.6

    1068

    s72

    M147_0.6

    1060

    s102

    1384

    1386

    M016_0.6

    s48

    926

    822

    1128

    1323

    988

    595

    1327

    707

    986

    796

    836

    762

    790

    838

    1124

    1017

    1393

    1392

    1390

    1236

    1335

    1334

    M109_0.6

    1238

    M273_0.6

    s14

    s96

    s99

    1311

    105

    902

    821

    900

    905

    1380

    788

    445

    924

    1244

    s62

    s61

    M074_0.6

    335

    60

    1167

    977

    976

    974

    852

    970

    1333

    509

    1037

    1035

    1213

    756

    639

    M148_0.6

    786

    1355

    M065_0.6

    93

    167

    M070_0.6

    813

    M050_0.6

    1188

    1022

    1187

    1029

    815

    727

    722

    883

    604

    606

    884

    749

    779

    608

    996

    M037_0.6

    1055

    878

    1059

    952

    1195

    954

    870

    325

    758

    770

    610

    1274

    1042

    M127_0.6

    s24

    804    		 Assembly1
    rna:L5:1~5069 368,677~678,1028~1029,1059~106
    0,1180,1719~1721,1731,1815~181
    6,1826~1827
    13802 8y36:A
    (2.65Å)
    		 2885 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000046CA76 RF02541 Staphylococcus
    aureus
    1280    		 38992047 Assembly1
    rna:B:1~115 906~908,960,962~964,1002,2366
    13803 8y36:B
    (2.65Å)
    		 115 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000062A7E RF00001 Staphylococcus
    aureus
    1280    		 38992047 Assembly1
    rna:A:3~2920 39,76~79,87,93~94,96~97
    13804 8y37:A
    (2.53Å)
    		 2884 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000046CA76 RF02541 Staphylococcus
    aureus
    1280    		 38992047 Assembly1
    rna:B:1~115 906~908,960~964,1002,2366
    13805 8y37:B
    (2.53Å)
    		 115 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000062A7E RF00001 Staphylococcus
    aureus
    1280    		 38992047 Assembly1
    rna:A:3~2920 39,76~79,87,93~94,96~97
    13806 8y38:A
    (2.58Å)
    		 2885 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000046CA76 RF02541 Staphylococcus
    aureus
    1280    		 38992047 Assembly1
    rna:B:1~115 906~908,962~963,1002
    rna:a:5~1552 1745,1747~1748,1859,1874~1875,
    1974~1977,1986
    13807 8y38:B
    (2.58Å)
    		 115 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000062A7E RF00001 Staphylococcus
    aureus
    1280    		 38992047 Assembly1
    rna:A:3~2920 76~78,87,94,96~97
    13808 8y38:a
    (2.58Å)
    		 1479 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002311997 RF00177 Staphylococcus
    aureus
    1280    		 38992047 Assembly1
    rna:A:3~2920 710,908,1428,1430,1439~1440,14
    85,1494
    13809 8y39:A
    (3.6Å)
    		 2885 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000046CA76 RF02541 Staphylococcus
    aureus
    1280    		 38992047 Assembly1
    rna:B:1~115 906~908,962~963,1002
    rna:a:5~1552 1745,1747~1748,1859,1874~1875,
    1974~1977,1986
    13810 8y39:B
    (3.6Å)
    		 115 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000062A7E RF00001 Staphylococcus
    aureus
    1280    		 38992047 Assembly1
    rna:A:3~2920 76~78,87,94,96~97
    13811 8y39:a
    (3.6Å)
    		 1479 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00029EB366 RF00177 Staphylococcus
    aureus
    1280    		 38992047 Assembly1
    rna:A:3~2920 710,908,1428,1430,1439~1440,14
    85,1494
    13812 8y5k:1
    (6.9Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:2:1~120 861~864,915~919,958~959
    rna:3:2~1540 1912~1913,1915~1916,1919~1920,
    1947~1949,1959~1962
    rna:5:1~76 880~881,1913,2063,2251~2253,24
    50~2451,2602
    rna:6:1~76 1850~1852,1891~1893,2112,2122,
    2168,2394~2395,2421~2422,2432
    13813 8y5k:2
    (6.9Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 78~81,89~90,96~97,99~101
    13814 8y5k:3
    (6.9Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 1407~1409,1418,1420,1483~1485,
    1494~1495,1517
    rna:4:1~44 530,926,1196,1397,1400~1402,14
    92~1493,1498
    rna:5:1~76 518,530~531,1054,1493
    rna:6:1~76 790,966,1229~1230,1338~1341,14
    00
    13815 8y5k:4
    (6.9Å)
    		 18 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:3:2~1540 1~6,8
    rna:5:1~76 4~7
    rna:6:1~76 1~3
    13816 8y5k:5
    (6.9Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 38~39,57,74~76
    rna:3:2~1540 34~37
    rna:4:1~44 34~37
    13817 8y5k:6
    (6.9Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 2,4,19,55~56,70~72,75~76
    rna:3:2~1540 30~32,34,38~42
    rna:4:1~44 34~37
    13818 8y5l:1
    (3.7Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:2:1~120 861~864,915,917~918,958~959
    rna:3:2~1540 1700,1702~1704,1836~1837,1848,
    1912~1913,1915~1916,1919~1920,
    1947~1948,1959~1961
    rna:5:1~76 896~897,1913,1942~1943,2452,24
    82~2483,2507,2553,2555,2573,25
    83
    rna:6:1~76 1907~1909,1922~1924,2251~2253,
    2450~2451,2602
    rna:7:1~76 1850~1852,1891~1893,2112,2394~
    2395,2421~2422,2432
    13819 8y5l:2
    (3.7Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 78~80,89,96~101
    13820 8y5l:3
    (3.7Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 702,783~784,899,1407~1409,1418
    ,1428~1429,1483~1484,1493~1495
    ,1517
    rna:4:1~47 528,530,926,1397,1400~1403,149
    2~1493,1498
    rna:5:1~76 530,955,1054,1493
    rna:6:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:7:1~76 693,1382~1383
    13821 8y5l:4
    (3.7Å)
    		 36 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:3:2~1540 1~3,5~8
    rna:5:1~76 4~6
    rna:6:1~76 1~3
    13822 8y5l:5
    (3.7Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 19,38,57,63,72,74~76
    rna:3:2~1540 34,36,41
    rna:4:1~47 34~37
    13823 8y5l:6
    (3.7Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 12~13,24~25,74~76
    rna:3:2~1540 30~31,34,38~41
    rna:4:1~47 34~37
    13824 8y5l:7
    (3.7Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 4,56,70~72,75~76
    rna:3:2~1540 34~35,38
    13825 8y5m:1
    (4.5Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:2:1~120 861~864,915~919,958~959
    rna:3:2~1540 1912~1913,1915~1916,1919~1920,
    1947~1949,1959~1962
    rna:5:1~76 880~881,1913,2063,2251~2253,24
    50~2451,2602
    rna:6:1~76 1850~1852,1891~1893,2112,2122,
    2168,2394~2395,2421~2422,2432
    13826 8y5m:2
    (4.5Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 78~81,89~90,96~97,99~101
    13827 8y5m:3
    (4.5Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 1407~1409,1418,1420,1483~1485,
    1494~1495,1517
    rna:4:1~44 530,926,1196,1397,1400~1402,14
    92~1493,1498
    rna:5:1~76 518,530~531,1054,1493
    rna:6:1~76 790,966,1229~1230,1338~1341,14
    00
    13828 8y5m:4
    (4.5Å)
    		 30 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:3:2~1540 1~6,8
    rna:5:1~76 4~7
    rna:6:1~76 1~3
    13829 8y5m:5
    (4.5Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 38~39,57,74~76
    rna:3:2~1540 34~37
    rna:4:1~44 34~37
    13830 8y5m:6
    (4.5Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 2,4,19,55~56,70~72,75~76
    rna:3:2~1540 30~32,34,38~42
    rna:4:1~44 34~37
    13831 8y5n:1
    (4.5Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:2:1~120 861~863,915,917~918,958~959
    rna:3:2~1540 1701,1703,1912~1913,1916,1919,
    1947,1949,1959~1961
    rna:5:1~76 1913,2063~2064,2251~2253,2450~
    2451,2585,2602
    rna:6:1~76 1850~1851,1891~1892,2112,2394~
    2395,2421~2422,2432
    13832 8y5n:2
    (4.5Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 78~80,89,96~97,99~100
    13833 8y5n:3
    (4.5Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 1407~1409,1419~1420,1474,1476,
    1483~1484,1493~1495,1517
    rna:4:1~38 518,530,1054,1196,1397,1400~14
    01,1492~1493,1498
    rna:5:1~76 530,955,1054,1493
    rna:6:1~76 790,966,1229~1230,1338~1341,14
    00
    13834 8y5n:4
    (4.5Å)
    		 22 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:3:2~1540 1~8
    rna:5:1~76 4~7
    rna:6:1~76 1~3
    13835 8y5n:5
    (4.5Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 38,74~76
    rna:3:2~1540 34,36~37,42
    rna:4:1~38 34~37
    13836 8y5n:6
    (4.5Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 2~3,19,70~72,75~76
    rna:3:2~1540 30~32,34,38~39,41
    rna:4:1~38 34~37
    13837 8y5o:1
    (4.2Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:2:1~120 861~863,915,917~918,958~959
    rna:3:2~1540 1701,1703,1912~1914,1916,1919,
    1947,1949,1959~1961
    rna:5:1~76 1913,2063~2064,2251~2253,2450~
    2451,2585,2602
    rna:6:1~76 1850~1851,1891~1892,2112,2394~
    2395,2421~2422,2432
    13838 8y5o:2
    (4.2Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 78~80,89,96~97,99~100
    13839 8y5o:3
    (4.2Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 1407~1410,1419~1420,1474,1476,
    1483~1484,1493~1495,1517
    rna:4:1~47 518,530,1054,1196,1397,1400~14
    01,1492~1493,1498
    rna:5:1~76 518,530,955,1054,1493
    rna:6:1~76 790,966,1229~1230,1338~1341,14
    00
    13840 8y5o:4
    (4.2Å)
    		 30 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:3:2~1540 1~8
    rna:5:1~76 4~7
    rna:6:1~76 1~3
    13841 8y5o:5
    (4.2Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 38~39,74~76
    rna:3:2~1540 34,36~37,42
    rna:4:1~47 34~37
    13842 8y5o:6
    (4.2Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 2~3,19,70~72,75~76
    rna:3:2~1540 30~32,34,38~39,41
    rna:4:1~47 34~37
    13843 8y5p:1
    (6.5Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:2:1~120 861~863,915,917~918,958~959
    rna:3:2~1540 1701,1703,1912~1914,1916,1919,
    1947,1949,1959~1961
    rna:6:1~76 1850~1851,1891~1892,2112,2394~
    2395,2421~2422,2432
    13844 8y5p:2
    (6.5Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 78~80,89,96~97,99~100
    13845 8y5p:3
    (6.5Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 1407~1410,1419~1420,1474,1476,
    1483~1484,1493~1495,1517
    rna:4:1~41 518,530,1054,1196,1397,1400~14
    01,1492~1493,1498
    rna:6:1~76 790,966,1229~1230,1338~1341,14
    00
    13846 8y5p:4
    (6.5Å)
    		 30 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:3:2~1540 1~8
    rna:6:1~76 1~3
    13847 8y5p:6
    (6.5Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 2~3,19,70~72,75~76
    rna:3:2~1540 30~32,34,38~39,41
    rna:4:1~41 34~37
    13848 8y5q:1
    (3.9Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:2:1~120 861~863,915,917~918,958~959
    rna:3:2~1540 1701,1703,1912~1913,1916,1919,
    1947,1949,1959~1961
    rna:6:1~76 1850~1851,1891~1892,2112,2394~
    2395,2421~2422,2432
    13849 8y5q:2
    (3.9Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 78~80,89,96~97,99~100
    13850 8y5q:3
    (3.9Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 1407~1409,1419~1420,1474,1476,
    1483~1484,1493~1495,1517
    rna:4:1~44 518,530,1054,1196,1397,1400~14
    01,1498
    rna:6:1~76 790,966,1229~1230,1338~1341,14
    00
    13851 8y5q:4
    (3.9Å)
    		 30 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:3:2~1540 1~3,6~8
    rna:6:1~76 1~3
    13852 8y5q:6
    (3.9Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 2~3,19,70~72,75~76
    rna:3:2~1540 30~32,34,38~39,41
    rna:4:1~44 34~37
    13853 8y5r:1
    (4.5Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:2:1~120 861~864,915,917~918,958~959
    rna:3:2~1540 1700,1702~1704,1836~1837,1848,
    1912~1913,1915~1916,1919~1920,
    1947~1948,1959~1961
    rna:5:1~76 1922,2063,2251~2253,2255,2450~
    2451,2602
    rna:6:1~76 1850~1852,1891~1893,2112,2394~
    2395,2421~2422,2432
    13854 8y5r:2
    (4.5Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 78~80,89,96~101
    13855 8y5r:3
    (4.5Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 702,783~784,899,1407~1409,1418
    ,1428~1429,1483~1484,1494~1495
    ,1517
    rna:4:1~44 528,530,693,926,1397,1400~1401
    ,1492~1493,1498,1506
    rna:5:1~76 790,1229~1230,1338~1340,1400
    rna:6:1~76 693,1382~1383
    13856 8y5r:4
    (4.5Å)
    		 39 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:3:2~1540 1,3~11
    rna:5:1~76 5~6
    rna:6:1~76 1,3
    13857 8y5r:5
    (4.5Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 25,74~76
    rna:3:2~1540 29~34,38~39
    rna:4:1~44 34~36
    13858 8y5r:6
    (4.5Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 4,56,70~72,75~76
    rna:3:2~1540 34~35,38
    rna:4:1~44 34~37
    13859 8y5s:1
    (4.5Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:2:1~120 861~864,915,917~918,958~959
    rna:3:2~1540 1700,1702~1704,1836~1837,1848,
    1912~1913,1915~1916,1919~1920,
    1947~1948,1959~1961
    rna:5:1~76 1922,2063,2251~2253,2255,2450~
    2451,2602
    rna:6:1~76 1850~1852,1891~1893,2112,2394~
    2395,2421~2422,2432
    13860 8y5s:2
    (4.5Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 78~80,89,96~101
    13861 8y5s:3
    (4.5Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 702,783~784,899,1407~1409,1418
    ,1428~1429,1483~1484,1494~1495
    ,1517
    rna:4:1~44 528,530,693,926,1397,1400~1401
    ,1492~1493,1498,1506
    rna:5:1~76 790,1229~1230,1338~1340,1400
    rna:6:1~76 693,1382~1383
    13862 8y5s:4
    (4.5Å)
    		 39 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:3:2~1540 1,3~11
    rna:5:1~76 5~6
    rna:6:1~76 1,3
    13863 8y5s:5
    (4.5Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 25,74~76
    rna:3:2~1540 29~34,38~39
    rna:4:1~44 34~36
    13864 8y5s:6
    (4.5Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 4,56,70~72,75~76
    rna:3:2~1540 34~35,38
    rna:4:1~44 34~37
    13865 8y5t:1
    (4.4Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:2:1~120 861~864,915,917~918,958~959
    rna:3:2~1540 1700,1702~1704,1836~1837,1848,
    1912~1913,1915~1916,1919~1920,
    1947~1948,1959~1961
    rna:5:1~76 1922,2063,2251~2253,2255,2450~
    2451,2602
    rna:6:1~76 1850~1852,1891~1893,2112,2394~
    2395,2421~2422,2432
    13866 8y5t:2
    (4.4Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 78~80,89,96~101
    13867 8y5t:3
    (4.4Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 702,783~784,899,1407~1409,1418
    ,1428~1429,1483~1484,1494~1495
    ,1517
    rna:4:1~44 528,530,693,926,1397,1400~1401
    ,1492~1493,1498,1506
    rna:5:1~76 790,1229~1230,1338~1340,1400
    rna:6:1~76 693,1382~1383
    13868 8y5t:4
    (4.4Å)
    		 39 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:3:2~1540 1,3~11
    rna:5:1~76 5~6
    rna:6:1~76 1,3
    13869 8y5t:5
    (4.4Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 25,74~76
    rna:3:2~1540 29~34,38~39
    rna:4:1~44 34~36
    13870 8y5t:6
    (4.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 4,56,70~72,75~76
    rna:3:2~1540 34~35,38
    rna:4:1~44 34~37
    13871 8y6o:A
    (3.38Å)
    		 13 N/A N/A N/A Homo
    sapiens
    9606    		 38484052 Assembly1
    rna:P:1~133 3~11
    13872 8y6o:J
    (3.38Å)
    		 109 GO:0030624 (F) U6atac snRNA binding
    GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0005690 (C) U4atac snRNP    		 URS00029156FB RF00618 Homo
    sapiens
    9606    		 38484052
    M031_0.6

    M347_0.6

    s0

    1195

    s79

    s55

    655

    M227_0.6

    399

    81

    119    		 Assembly1
    rna:K:23~67 3~21,59~65
    13873 8y6o:K
    (3.38Å)
    		 44 GO:0030622 (F) U4atac snRNA binding
    GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0005691 (C) U6atac snRNP    		 URS0000443498 RF00619 Homo
    sapiens
    9606    		 38484052 Assembly1
    rna:J:1~130 23~48
    13874 8y6o:P
    (3.38Å)
    		 124 GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0005692 (C) U11 snRNP    		 URS000000A142 RF00548 Homo
    sapiens
    9606    		 38484052
    M150_0.6

    M158_0.6

    M025_0.6

    M075_0.6

    660    		 Assembly1
    rna:A:-1~11 1~7,61~62,75~77
    13875 8y7e:A
    (4.66Å)
    		 30 N/A N/A N/A Homo
    sapiens
    9606    		 38484052
    605

    1129

    596

    609

    332

    M149_0.6

    726

    775

    1074

    798

    1039

    1018

    M012_0.6

    1015

    1094

    1096

    1159

    1158

    772

    465

    611

    1098

    1135

    s95

    725

    765

    1069

    1286

    1061

    1063

    1065

    s101

    M232_0.6

    1106

    1243

    1242

    683

    720

    721

    686

    1108    		 Assembly1
    rna:H:14~84 193~202,204~206
    13876 8y7e:H
    (4.66Å)
    		 50 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005693 (C) U12 snRNP    		 URS00006ECA78 RF00007 Homo
    sapiens
    9606    		 38484052 Assembly1
    rna:A:193~222 16~28
    13877 8ydb:C
    (3.4Å)
    		 60 N/A URS00029EB385 N/A Selenomonas
    sp.
    2053611    		 39047725 Assembly1
    rna:T:22~53 9,11~13,16~19,21~25,27~31
    13878 8ydb:N
    (3.4Å)
    		 11 N/A URS00029EB354 N/A Selenomonas
    sp.
    2053611    		 39047725 Assembly1
    rna:T:22~53 9~17
    13879 8ydb:T
    (3.4Å)
    		 32 N/A URS00029EB336 N/A Selenomonas
    sp.
    2053611    		 39047725 Assembly1
    rna:C:1~60 22~26,28~32,34~37,40~42,44
    rna:N:9~19 45~53
    13880 8ydc:A
    (2.89Å)
    		 57 GO:0004540 (F) RNA nuclease activity URS00029EB304 RF03152 synthetic
    construct
    32630    		 39103372 Assembly1
    rna:B:1~14 24~28,31~32,34,44~55
    13881 8ydc:B
    (2.89Å)
    		 14 N/A URS00029EB316 N/A synthetic
    construct
    32630    		 39103372 Assembly1
    rna:A:-1~55 1~14
    13882 8yde:1
    (5.0Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:2:1~120 861~864,915,917~918,958~959
    rna:3:2~1540 1700,1702~1704,1836~1837,1848,
    1912~1913,1915~1916,1919~1920,
    1947~1948,1959~1961
    rna:5:1~76 896~897,1913,1942~1943,2452,24
    82~2483,2507,2553,2555,2573,25
    83
    rna:6:1~76 1907~1909,1922~1924,2251~2253,
    2450~2451,2602
    rna:7:1~76 1850~1852,1891~1893,2112,2394~
    2395,2421~2422,2432
    13883 8yde:2
    (5.0Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 78~80,89,96~101
    13884 8yde:3
    (5.0Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 702,783~784,899,1407~1409,1418
    ,1428~1429,1483~1484,1493~1495
    ,1517
    rna:4:1~56 528,530,926,1397,1400~1403,149
    2~1493,1498
    rna:5:1~76 530,955,1054,1493
    rna:6:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:7:1~76 693,1382~1383
    13885 8yde:4
    (5.0Å)
    		 35 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:3:2~1540 1~3,5~8
    rna:5:1~76 4~6
    rna:6:1~76 1~3
    13886 8yde:5
    (5.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 19,38,57,63,72,74~76
    rna:3:2~1540 34,41
    rna:4:1~56 34~37
    13887 8yde:6
    (5.0Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 12~13,24~25,74~76
    rna:3:2~1540 30~31,34,38~41
    rna:4:1~56 34~37
    13888 8yde:7
    (5.0Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 4,56,70~72,75~76
    rna:3:2~1540 34~35,38
    13889 8ydf:1
    (4.6Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:2:1~120 861~864,915,917~918,958~959
    rna:3:2~1540 1700,1702~1704,1836~1837,1848,
    1912~1913,1915~1916,1919~1920,
    1947~1948,1959~1961
    rna:5:1~76 896~897,1913,1942~1943,2452,24
    82~2483,2507,2553,2555,2573,25
    83
    rna:6:1~76 1907~1909,1922~1924,2251~2253,
    2450~2451,2602
    rna:7:1~76 1850~1852,1891~1893,2112,2394~
    2395,2421~2422,2432
    13890 8ydf:2
    (4.6Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 78~80,89,96~101
    13891 8ydf:3
    (4.6Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 702,783~784,899,1407~1409,1418
    ,1428~1429,1483~1484,1493~1495
    ,1517
    rna:4:1~56 528,530,926,1397,1400~1403,149
    2~1493,1498
    rna:5:1~76 530,955,1054,1493
    rna:6:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:7:1~76 693,1382~1383
    13892 8ydf:4
    (4.6Å)
    		 36 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:3:2~1540 1~3,5~8
    rna:5:1~76 4~6
    rna:6:1~76 1~3
    13893 8ydf:5
    (4.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 19,38,57,63,72,74~76
    rna:3:2~1540 34,36,41
    rna:4:1~56 34~37
    13894 8ydf:6
    (4.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 12~13,24~25,74~76
    rna:3:2~1540 30~31,34,38~41
    rna:4:1~56 34~37
    13895 8ydf:7
    (4.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 4,56,70~72,75~76
    rna:3:2~1540 34~35,38
    13896 8ydg:1
    (5.1Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:2:1~120 861~863,915,917~918,958~959
    rna:3:2~1540 1701,1703,1912~1914,1916,1919,
    1947,1949,1959~1961
    rna:5:1~76 1913,2063~2064,2251~2253,2450~
    2451,2585,2602
    rna:6:1~76 1850~1851,1891~1892,2112,2394~
    2395,2421~2422,2432
    13897 8ydg:2
    (5.1Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 78~80,89,96~97,99~100
    13898 8ydg:3
    (5.1Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 1407~1410,1419~1420,1474,1476,
    1483~1484,1493~1495,1517
    rna:4:1~56 518,530,1054,1196,1397,1400~14
    01,1492~1493,1498
    rna:5:1~76 518,530,955,1054,1493
    rna:6:1~76 790,966,1229~1230,1338~1341,14
    00
    13899 8ydg:4
    (5.1Å)
    		 33 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:3:2~1540 1~8
    rna:5:1~76 4~7
    rna:6:1~76 1~3
    13900 8ydg:5
    (5.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 38,74~76
    rna:3:2~1540 34,36~37,42
    rna:4:1~56 34~37
    << < 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.