SEQ2FUN

FURNA
Download all results in tab-seperated text for 16611 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    13901 8ydg:6
    (5.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 2~3,19,70~72,75~76
    rna:3:2~1540 30~32,34,38~39,41
    rna:4:1~56 34~37
    13902 8ydh:1
    (4.55Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:2:1~120 861~864,915,917~918,958~959
    rna:3:2~1540 1700,1702~1704,1836~1837,1848,
    1912~1913,1915~1916,1919~1920,
    1947~1948,1959~1961
    rna:5:1~76 896~897,1913,1942~1943,2452,24
    82~2483,2507,2553,2555,2573,25
    83
    rna:6:1~76 1907~1909,1922~1924,2251~2253,
    2450~2451,2602
    rna:7:1~76 1850~1852,1891~1893,2112,2394~
    2395,2421~2422,2432
    13903 8ydh:2
    (4.55Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 78~80,89,96~101
    13904 8ydh:3
    (4.55Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 702,783~784,899,1407~1409,1418
    ,1428~1429,1483~1484,1493~1495
    ,1517
    rna:4:1~56 528,530,926,1397,1400~1403,149
    2~1493,1498
    rna:5:1~76 530,955,1054,1493
    rna:6:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:7:1~76 693,1382~1383
    13905 8ydh:4
    (4.55Å)
    		 35 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:3:2~1540 1~3,5~8
    rna:5:1~76 4~6
    rna:6:1~76 1~3
    13906 8ydh:5
    (4.55Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 19,38,57,63,72,74~76
    rna:3:2~1540 34,36,41
    rna:4:1~56 34~37
    13907 8ydh:6
    (4.55Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 12~13,24~25,74~76
    rna:3:2~1540 30~31,34,38~41
    rna:4:1~56 34~37
    13908 8ydh:7
    (4.55Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 4,56,70~72,75~76
    rna:3:2~1540 34~35,38
    13909 8ydi:1
    (4.6Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:2:1~120 861~864,915,917~918,958~959
    rna:3:2~1540 1700,1702~1704,1836~1837,1848,
    1912~1913,1915~1916,1919~1920,
    1947~1948,1959~1961
    rna:5:1~76 896~897,1913,1942~1943,2452,24
    82~2483,2507,2553,2555,2573,25
    83
    rna:6:1~76 1907~1909,1922~1924,2251~2253,
    2450~2451,2602
    rna:7:1~76 1850~1852,1891~1893,2112,2394~
    2395,2421~2422,2432
    13910 8ydi:2
    (4.6Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 78~80,89,96~101
    13911 8ydi:3
    (4.6Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 702,783~784,899,1407~1409,1418
    ,1428~1429,1483~1484,1494~1495
    ,1517
    rna:4:1~56 528,530,926,1397,1400~1403,149
    2~1493,1498
    rna:5:1~76 530,955,1054,1493
    rna:6:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:7:1~76 693,1382~1383
    13912 8ydi:4
    (4.6Å)
    		 35 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:3:2~1540 1~3,5~8
    rna:5:1~76 4~6
    rna:6:1~76 1~3
    13913 8ydi:5
    (4.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 19,38,57,63,72,74~76
    rna:3:2~1540 34,36,41
    rna:4:1~56 34~37
    13914 8ydi:6
    (4.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 12~13,24~25,74~76
    rna:3:2~1540 30~31,34,38~41
    rna:4:1~56 34~37
    13915 8ydi:7
    (4.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 4,56,70~72,75~76
    rna:3:2~1540 34~35,38
    13916 8ydj:1
    (5.1Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:2:1~120 861~863,915,917~918,958~959
    rna:3:2~1540 1701,1703,1912~1914,1916,1919,
    1947,1949,1959~1961
    rna:5:1~76 1913,2063~2064,2251~2253,2450~
    2451,2585,2602
    rna:6:1~76 1850~1851,1891~1892,2112,2394~
    2395,2421~2422,2432
    13917 8ydj:2
    (5.1Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 78~80,89,96~97,99~100
    13918 8ydj:3
    (5.1Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 1407~1410,1419~1420,1474,1476,
    1483~1484,1493~1495,1517
    rna:4:1~56 518,530,1054,1196,1397,1400~14
    01,1492~1493,1498
    rna:5:1~76 518,530,955,1054,1493
    rna:6:1~76 790,966,1229~1230,1338~1341,14
    00
    13919 8ydj:4
    (5.1Å)
    		 30 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:3:2~1540 1~8
    rna:5:1~76 4~7
    rna:6:1~76 1~3
    13920 8ydj:5
    (5.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 38,74~76
    rna:3:2~1540 34,36~37,42
    rna:4:1~56 34~37
    13921 8ydj:6
    (5.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:1:1~2903 2~3,19,70~72,75~76
    rna:3:2~1540 30~32,34,38~39,41
    rna:4:1~56 34~37
    13922 8yeo:C
    (3.44Å)
    		 60 N/A URS00029EB385 N/A Selenomonas
    sp.
    2053611    		 39047725 Assembly1
    rna:T:6~53 9,11~13,16~19,21~25,27~31,33~3
    7,39~41,43
    13923 8yeo:N
    (3.44Å)
    		 11 N/A URS00029EB354 N/A Selenomonas
    sp.
    2053611    		 39047725 Assembly1
    rna:T:6~53 9~17
    13924 8yeo:T
    (3.44Å)
    		 48 N/A URS00029EB355 N/A Selenomonas
    sp.
    2053611    		 39047725 Assembly1
    rna:C:1~60 12~14,16~20,22~26,28~32,34~37,
    40~42,44
    rna:N:9~19 45~53
    13925 8yhd:M
    (2.93Å)
    		 53 N/A URS00029EB346 N/A metagenome
    256318    		 39143216 Assembly1
    rna:N:3~37 1~4,6~10,12~16,18~22,24~28,30~
    34
    13926 8yhd:N
    (2.93Å)
    		 35 N/A URS00029EB33E N/A metagenome
    256318    		 39143216 Assembly1
    rna:M:-9~44 3~22,24~31,33~36
    13927 8yhe:M
    (3.07Å)
    		 46 N/A URS00029EB337 N/A metagenome
    256318    		 39143216 Assembly1
    rna:N:9~38 1~4,6~10,12~16,18~22,24~28
    13928 8yhe:N
    (3.07Å)
    		 30 N/A URS00029EB33E N/A metagenome
    256318    		 39143216 Assembly1
    rna:M:-8~37 9~25,27~31,33~36
    13929 8yld:2
    (3.9Å)
    		 1771 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002F12C84 RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:A:3~3396 628~629,913,972~973,1645,1655~
    1657,1746~1747,1756~1759,1780
    rna:s:1~76 1274,1756
    rna:t:1~76 1001,1191,1462~1463,1575~1577
    13930 8yld:A
    (3.9Å)
    		 3193 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632E RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:2:1~1799 846~848,2125,2205,2207,2255~22
    56,2258~2259,2262~2263,2290~22
    93,2302~2304
    rna:B:1~121 996~998,1054~1055,1171,1197,12
    03
    rna:C:1~158 3~23,59,143,330~337,340~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1398~139
    9,1419,1442,1530,1558,1571,158
    5,1617~1618,1830~1832,2386~238
    7,2585,2994~2995
    rna:s:1~76 2256,2875,2924,2952~2953
    rna:t:1~76 2454,2484,2764~2765,2793~2794
    13931 8yld:B
    (3.9Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:A:3~3396 79~81,86,90,100,102
    13932 8yld:C
    (3.9Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:A:3~3396 1~22,24~37,40,53~54,104,109,11
    2~115,126~127,129,136~137,139~
    152,154~157
    13933 8yld:s
    (3.9Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00021ED942 RF00005 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:2:1~1799 34,36~37
    rna:A:3~3396 37~38,75~76
    13934 8yld:t
    (3.9Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00021ED942 RF00005 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:2:1~1799 30~31,34,38~42
    rna:A:3~3396 19,56,72,75~76
    13935 8ylr:2
    (3.9Å)
    		 1771 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002F12C84 RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:A:3~3396 628~629,913,972~973,995,1644~1
    647,1655,1657,1667,1746~1747,1
    756~1758,1780
    rna:t:1~76 1274,1637
    rna:u:1~75 1191,1462~1463,1576~1577
    13936 8ylr:A
    (3.9Å)
    		 3192 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632E RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:2:1~1799 846~848,1935,2124~2125,2196,22
    06~2207,2255~2259,2262~2263,22
    90~2292,2302~2303
    rna:B:1~121 996~999,1054~1055,1171,1197,12
    03
    rna:C:1~158 3~23,59,143~144,330~337,339~34
    2,345~346,349,351,368~369,404~
    419,656~657,691,1395,1398~1399
    ,1419~1420,1442,1530,1558,1585
    ,1618,1830~1832,2386,2585,2994
    ~2995
    rna:t:1~76 2821,2862~2863,2875~2876,2942,
    2953,2971
    13937 8ylr:B
    (3.9Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:A:3~3396 79~81,86,90,100,102~104
    13938 8ylr:C
    (3.9Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:A:3~3396 1~22,24~37,40,53~54,104,106,10
    9,113~115,118,126,129,136~152,
    154~157
    13939 8ylr:t
    (3.9Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00021ED942 RF00005 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:A:3~3396 75~76
    13940 8ylr:u
    (3.9Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00021ED942 RF00005 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:2:1~1799 30,32,34,41
    13941 8yno:A
    (1.3Å)
    		 12 N/A URS0002F1044C N/A synthetic
    construct
    32630    		 39231537 Assembly1
    rna:B:1~12 1~12
    13942 8yno:B
    (1.3Å)
    		 12 N/A URS0002F1044C N/A synthetic
    construct
    32630    		 39231537 Assembly1
    rna:A:1~12 1~12
    13943 8ynp:A
    (1.4Å)
    		 12 N/A URS0002F1044C N/A synthetic
    construct
    32630    		 39231537 Assembly1
    rna:B:1~12 1~12
    13944 8ynp:B
    (1.4Å)
    		 12 N/A URS0002F1044C N/A synthetic
    construct
    32630    		 39231537 Assembly1
    rna:A:1~12 1~12
    13945 8yoo:L5
    (2.0Å)
    		 3670 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60B81 RF02543 Homo
    sapiens
    9606    		 38942792
    M054_0.6

    1306

    769

    706

    1303

    762

    42

    1148

    1149

    764

    870

    167

    21

    1079

    930

    1029

    1075

    1072

    1073

    s77

    1071

    819

    1373

    938

    546

    s52

    s51

    s50

    931

    813

    936

    s59

    995

    994

    595

    1314

    991

    1312

    1311

    1028

    1150

    673

    123

    124

    125

    1068

    s72

    1060

    s100

    s102

    52

    533

    M227_0.6

    1384

    375

    926

    822

    1128

    988

    1321

    708

    704

    705

    1328

    707

    1124

    987

    1126

    703

    M077_0.6

    1237

    83

    1181

    797

    796

    795

    836

    837

    791

    790

    838

    1334

    s70

    1016

    1017

    1393

    610

    1012

    1013

    1236

    M290_0.6

    763

    1231

    1232

    1233

    1335

    s17

    M109_0.6

    1336

    1331

    1239

    1333

    589

    776

    M273_0.6

    s99

    1389

    902

    821

    900

    901

    906

    905

    33

    s48

    853

    924

    M044_0.6

    1245

    s62

    s96

    1227

    883

    M035_0.6

    1223

    M156_0.6

    604

    M320_0.6

    1347

    60

    s81

    M349_0.6

    1083

    175

    1026

    100

    s61

    977

    976

    974

    852

    970

    M154_0.6

    884

    s55

    979

    M153_0.6

    183

    1238

    185

    1375

    1036

    503

    1034

    1035

    1212

    M102_0.6

    1211

    1216

    1042

    986

    467

    M148_0.6

    1354

    M103_0.6

    169

    91

    1127

    162

    M070_0.6

    M272_0.6

    M020_0.6

    M050_0.6

    1187

    1182

    815

    1037

    727

    M347_0.6

    722

    935

    M086_0.6

    1164

    1165

    1166

    606

    886

    156

    748

    749

    608

    M061_0.6

    958

    1055

    878

    879

    1059

    953

    952

    872

    954

    957

    1107

    1352

    774

    1215

    M104_0.6

    1173

    770

    773

    1183

    1271

    1272

    1273

    779

    778

    1178

    M151_0.6

    78

    1285

    M083_0.6

    1041

    1040

    1043

    1045

    1044

    1288

    354

    688

    1360

    684

    800

    1368    		 Assembly1
    rna:L7:1~120 1736~1738,1741,1792~1796,1894,
    1909,1936,1942
    rna:L8:1~156 1~22,58,146,193,339,341~348,35
    0~353,355~357,360,362,379~380,
    415~430,1304~1305,1333~1334,13
    71,2308~2309,2312,2332~2334,23
    55,2444,2472,2493~2494,2508,25
    44,2778~2780,3890
    rna:S2:1~1869 1563~1565,2867~2868,2884~2885,
    3629,3695,3699~3700,3709~3710,
    3759~3763,3766~3767,3794~3796,
    3806~3808
    13946 8yoo:L7
    (2.0Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000F9D45 RF00001 Homo
    sapiens
    9606    		 38942792
    931

    1290

    s51

    879    		 Assembly1
    rna:L5:1~5069 77~80,84,88,98,100~101,103
    13947 8yoo:L8
    (2.0Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000005270 RF00002 Homo
    sapiens
    9606    		 38942792
    1227

    592

    s24

    993

    1215

    1352

    s37

    1238

    1178

    M085_0.6

    1389

    1360

    589

    375

    M106_0.6    		 Assembly1
    rna:L5:1~5069 3~13,15~22,24~37,40~41,53~54,6
    8,103,108,110~113,115,124~127,
    136,138~149,151~156
    13948 8yoo:S2
    (2.0Å)
    		 1719 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000868520 RF01960 Homo
    sapiens
    9606    		 38942792
    1303

    1263

    872

    1149

    1267

    764

    954

    692

    1079

    1075

    1072

    1073

    819

    346

    546

    1378

    930

    936

    935

    M296_0.6

    1314

    M141_0.6

    1068

    s72

    M147_0.6

    1060

    s102

    1386

    M016_0.6

    821

    926

    822

    1128

    1323

    988

    595

    1327

    707

    986

    796

    836

    762

    790

    838

    1124

    1017

    1393

    1392

    1390

    1236

    1335

    1334

    M109_0.6

    1238

    M273_0.6

    s14

    s96

    s99

    1311

    105

    902

    900

    s48

    788

    445

    924

    1244

    s62

    s61

    M074_0.6

    335

    60

    1167

    977

    976

    974

    970

    1333

    509

    1037

    1035

    1213

    756

    639

    M148_0.6

    786

    1355

    M065_0.6

    93

    167

    M070_0.6

    813

    M050_0.6

    1188

    1022

    1187

    1029

    815

    727

    722

    883

    604

    606

    884

    749

    779

    608

    996

    M037_0.6

    1055

    878

    1059

    952

    1195

    43

    870

    1380

    325

    758

    770

    610

    1274

    1042

    M127_0.6

    s24

    804    		 Assembly1
    rna:L5:1~5069 368,677~678,970,1028~1029,1051
    ~1052,1180,1708~1710,1719~1721
    ,1731,1815~1816,1824~1828,1849
    13949 8yop:L5
    (2.2Å)
    		 3771 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60B81 RF02543 Homo
    sapiens
    9606    		 38942792
    M054_0.6

    1306

    769

    706

    1303

    762

    763

    1148

    1149

    764

    870

    167

    21

    1079

    930

    1029

    1075

    1072

    1073

    M104_0.6

    1071

    819

    1373

    938

    546

    s52

    s51

    s50

    931

    813

    936

    s59

    995

    994

    595

    1314

    991

    1312

    1311

    1028

    1150

    673

    123

    124

    125

    1068

    1017

    1060

    s100

    s102

    52

    533

    M227_0.6

    1384

    375

    926

    822

    1128

    988

    1321

    708

    704

    705

    1328

    707

    1124

    987

    1126

    703

    M077_0.6

    1237

    83

    1181

    797

    796

    795

    836

    837

    791

    790

    838

    1334

    s70

    1016

    s72

    1393

    610

    1012

    1013

    1236

    M290_0.6

    1231

    1232

    1233

    1335

    s17

    M109_0.6

    1336

    1331

    1239

    1333

    589

    M273_0.6

    s99

    1389

    902

    821

    900

    901

    906

    905

    33

    s48

    853

    M102_0.6

    924

    M044_0.6

    1245

    s62

    s96

    1227

    883

    M035_0.6

    1223

    M156_0.6

    604

    M320_0.6

    1347

    60

    s81

    M349_0.6

    1083

    175

    100

    42

    s61

    977

    976

    974

    852

    970

    M154_0.6

    884

    s55

    979

    M153_0.6

    183

    1238

    185

    1375

    1036

    503

    1034

    1035

    1212

    1043

    1211

    1216

    1042

    986

    467

    M148_0.6

    1354

    M103_0.6

    169

    91

    1127

    162

    M070_0.6

    1026

    M020_0.6

    M050_0.6

    1187

    1182

    815

    1037

    1107

    M347_0.6

    722

    935

    M086_0.6

    1164

    1165

    1166

    606

    886

    156

    748

    749

    608

    727

    s77

    M061_0.6

    958

    1055

    878

    879

    1059

    953

    952

    872

    954

    957

    M272_0.6

    1352

    774

    1215

    776

    1173

    770

    773

    1183

    1271

    1272

    1273

    779

    778

    1178

    M151_0.6

    78

    1285

    M083_0.6

    1041

    1040

    1045

    1044

    1288

    354

    688

    1360

    684

    800

    1368

    804    		 Assembly1
    rna:L7:1~120 1736~1738,1741,1792~1796,1894,
    1909,1936,1942
    rna:L8:1~156 1~22,58,146,193,339,342~348,35
    0~353,356~357,360,362,379~380,
    415~430,1304~1305,1333~1334,13
    71,2308~2309,2312~2313,2332~23
    34,2355,2444,2472,2488,2493~24
    94,2508,2544,2778~2780,3890
    rna:S2:1~1869 1563~1564,2867,2884~2885,3628~
    3629,3695,3700,3711,3759~3763,
    3766~3767,3794~3796,3806~3808
    13950 8yop:L7
    (2.2Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000F9D45 RF00001 Homo
    sapiens
    9606    		 38942792
    931

    1290

    s51

    879    		 Assembly1
    rna:L5:1~5069 77~80,84,88,98,100~101,103~104
    13951 8yop:L8
    (2.2Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000005270 RF00002 Homo
    sapiens
    9606    		 38942792
    1227

    592

    s24

    993

    1215

    1352

    s37

    1238

    1178

    M085_0.6

    1389

    1360

    589

    375

    M106_0.6    		 Assembly1
    rna:L5:1~5069 3~22,24~37,40~41,53~54,68,103,
    108,110~113,115,124,126~127,13
    6,138~149,151~156
    13952 8yop:S2
    (2.2Å)
    		 1740 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000868520 RF01960 Homo
    sapiens
    9606    		 38942792
    1303

    1263

    872

    1149

    1267

    764

    43

    957

    692

    1079

    1075

    1072

    1073

    819

    346

    546

    1378

    930

    936

    935

    M296_0.6

    1314

    M141_0.6

    1068

    s72

    M147_0.6

    1060

    s102

    1384

    1386

    M016_0.6

    s48

    926

    822

    1128

    1323

    988

    595

    1327

    707

    986

    796

    836

    762

    790

    838

    1124

    1017

    1393

    1392

    1390

    1236

    1335

    1334

    M109_0.6

    1238

    M273_0.6

    s14

    s96

    s99

    1311

    105

    902

    821

    900

    905

    1380

    788

    445

    924

    1244

    s62

    s61

    M074_0.6

    335

    60

    1167

    977

    976

    974

    852

    970

    1333

    509

    1037

    1035

    1213

    756

    639

    M148_0.6

    786

    1355

    M065_0.6

    93

    167

    M070_0.6

    813

    M050_0.6

    1188

    1022

    1187

    1029

    815

    727

    722

    883

    604

    606

    884

    749

    779

    608

    996

    M037_0.6

    1055

    878

    1059

    952

    1195

    954

    870

    325

    758

    770

    610

    1274

    1042

    M127_0.6

    s24

    804    		 Assembly1
    rna:L5:1~5069 368,677~678,970,1028~1029,1052
    ,1180,1708~1710,1719~1721,1731
    ,1815~1816,1824~1828,1849
    13953 8yuo:A
    (2.25Å)
    		 1519 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177 Escherichia
    coli
    562    		 39300229 Assembly1
    rna:a:1~2903 702,784,899,1407~1409,1418~142
    0,1429,1473~1475,1483~1484,149
    4~1496,1517
    rna:W:25~35 693,926,1196,1397,1400~1402,14
    92~1493,1498
    rna:X:1~76 530,1054,1493
    rna:V:1~76 790,966,1229,1338~1341,1400
    13954 8yuo:V
    (2.25Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0002F10448 RF00005 Pseudomonas
    putida
    NBRC
    14164
    1211579    		 39300229 Assembly1
    rna:A:2~1534 29~32,34,38,40~41
    rna:a:1~2903 74~76
    rna:W:25~35 34~38
    13955 8yuo:W
    (2.25Å)
    		 11 N/A N/A N/A Escherichia
    coli
    562    		 39300229 Assembly1
    rna:A:2~1534 25,27~32,35
    rna:X:1~76 31~34
    rna:V:1~76 27~30
    13956 8yuo:X
    (2.25Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0002F10448 RF00005 Pseudomonas
    putida
    NBRC
    14164
    1211579    		 39300229 Assembly1
    rna:A:2~1534 34~37
    rna:a:1~2903 19~20,37~38,52,56,63,74~76
    rna:W:25~35 34~37
    13957 8yuo:a
    (2.25Å)
    		 2753 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    562    		 39300229 Assembly1
    rna:A:2~1534 1689,1700~1704,1832,1837,1846,
    1848,1912~1916,1919~1920,1947~
    1950,1959~1961
    rna:b:1~119 861~863,915,917~919,958,2340
    rna:X:1~76 882~883,896,1913,2470,2482,250
    6~2507,2555,2583~2584
    rna:V:1~76 2251~2253,2450~2451,2602
    13958 8yuo:b
    (2.25Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 39300229 Assembly1
    rna:a:1~2903 41,78~81,89,96~97,99~100
    13959 8yup:A
    (2.39Å)
    		 1519 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177 Escherichia
    coli
    562    		 39300229 Assembly1
    rna:a:1~2903 702,784,899,1407~1409,1418,142
    0,1429,1473~1475,1483~1484,149
    4~1496,1517
    rna:V:1~76 790,966,1229,1338~1340,1400
    rna:W:14~25 693,926,1397,1400~1402,1492~14
    93,1498
    rna:X:1~76 530~531,1054,1493
    13960 8yup:V
    (2.39Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000037E2FF RF00005 Escherichia
    coli
    BW25113
    679895    		 39300229 Assembly1
    rna:A:2~1534 31~33,35,39,41~42
    rna:a:1~2903 12~13,25~26,74~76
    rna:W:14~25 35~38
    13961 8yup:W
    (2.39Å)
    		 12 N/A N/A N/A Escherichia
    coli
    562    		 39300229 Assembly1
    rna:A:2~1534 14,16~21,23~24
    rna:V:1~76 17~19
    rna:X:1~76 20~23
    13962 8yup:X
    (2.39Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0002F10448 RF00005 Pseudomonas
    putida
    NBRC
    14164
    1211579    		 39300229 Assembly1
    rna:A:2~1534 34~37
    rna:a:1~2903 19~20,37~38,52,56,63,74~76
    rna:W:14~25 34~37
    13963 8yup:a
    (2.39Å)
    		 2753 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    562    		 39300229 Assembly1
    rna:A:2~1534 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1948,1950,1959~
    1961
    rna:b:1~119 861~863,915,917~919,958,2339~2
    340
    rna:V:1~76 1907~1908,1922~1923,2064,2251~
    2253,2450~2451,2602
    rna:X:1~76 882,896,1913,2470,2482,2506~25
    07,2553~2555,2583~2585,2602
    13964 8yup:b
    (2.39Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 39300229 Assembly1
    rna:a:1~2903 41,78~81,89,96~97,99~100
    13965 8yuq:A
    (2.41Å)
    		 1519 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177 Escherichia
    coli
    562    		 39300229 Assembly1
    rna:a:1~2903 702,784,899~900,1407~1409,1418
    ,1420,1429,1473~1475,1483~1484
    ,1494~1496,1517
    rna:V:1~76 790,966,1229~1230,1338~1341,14
    00
    rna:W:14~25 693,926,1196,1397,1400~1402,14
    92~1493,1498
    rna:X:1~76 530,1054,1196,1493
    13966 8yuq:V
    (2.41Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000037E2FF RF00005 Escherichia
    coli
    BW25113
    679895    		 39300229 Assembly1
    rna:A:2~1534 31~33,35,39~42
    rna:a:1~2903 11~13,25~26,74~76
    rna:W:14~25 35~38
    13967 8yuq:W
    (2.41Å)
    		 12 N/A N/A N/A Escherichia
    coli
    562    		 39300229 Assembly1
    rna:A:2~1534 14,17~21,23~24
    rna:V:1~76 17~19
    rna:X:1~76 20~22,24
    13968 8yuq:X
    (2.41Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0002F10448 RF00005 Pseudomonas
    putida
    NBRC
    14164
    1211579    		 39300229 Assembly1
    rna:A:2~1534 34~37
    rna:a:1~2903 19~20,37~38,52~53,56,63,74~76
    rna:W:14~25 34~37
    13969 8yuq:a
    (2.41Å)
    		 2753 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    562    		 39300229 Assembly1
    rna:A:2~1534 1700~1704,1832,1836~1837,1846,
    1848,1912~1916,1919~1920,1947~
    1948,1950,1959~1961
    rna:b:1~119 861~864,915,917~919,958
    rna:V:1~76 1907~1909,1922~1923,2251~2253,
    2450~2451,2602
    rna:X:1~76 882~883,896,1913,2470,2482~248
    3,2506~2507,2553~2555,2583~258
    5,2602
    13970 8yuq:b
    (2.41Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 39300229 Assembly1
    rna:a:1~2903 78~81,89,96~97,99~100
    13971 8yur:A
    (2.47Å)
    		 1519 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177 Escherichia
    coli
    562    		 39300229 Assembly1
    rna:a:1~2903 702,784,899,1407~1409,1418~141
    9,1429,1473~1475,1483~1484,149
    3~1496,1517
    rna:V:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:W:14~25 693,926,1196,1397,1400~1402,14
    92~1493,1498
    rna:X:1~76 530~531,1054,1493
    13972 8yur:V
    (2.47Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000037E2FF RF00005 Escherichia
    coli
    BW25113
    679895    		 39300229 Assembly1
    rna:A:2~1534 31~33,35,39~42
    rna:a:1~2903 11~12,24~26,74~76
    rna:W:14~25 35~38
    13973 8yur:W
    (2.47Å)
    		 12 N/A N/A N/A Escherichia
    coli
    562    		 39300229 Assembly1
    rna:A:2~1534 14,17~21,23~24
    rna:V:1~76 17~19
    rna:X:1~76 20~23
    13974 8yur:X
    (2.47Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0002F10448 RF00005 Pseudomonas
    putida
    NBRC
    14164
    1211579    		 39300229 Assembly1
    rna:A:2~1534 34~37
    rna:a:1~2903 19~20,37~38,52,56,63,74~76
    rna:W:14~25 34~37
    13975 8yur:a
    (2.47Å)
    		 2753 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    562    		 39300229 Assembly1
    rna:A:2~1534 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1916,1919~1920,
    1947~1949,1959~1961
    rna:b:1~119 861~864,915,917~919,958
    rna:V:1~76 1907~1909,1922~1924,2064,2251~
    2253,2450~2451,2602
    rna:X:1~76 882~883,896,1913,2470,2482,250
    6~2507,2553,2555,2583~2585,260
    2
    13976 8yur:b
    (2.47Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 39300229 Assembly1
    rna:a:1~2903 78~81,89,96~97,99~100
    13977 8yus:A
    (2.43Å)
    		 1519 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177 Escherichia
    coli
    562    		 39300229 Assembly1
    rna:a:1~2903 702,784,899,1407~1409,1418,142
    0,1429,1473~1475,1483~1484,149
    3~1496,1517
    rna:V:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:W:14~25 693,789,926,1196,1397,1400~140
    2,1492~1493,1498
    rna:X:1~76 530~531,1054,1493
    13978 8yus:V
    (2.43Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000037E2FF RF00005 Escherichia
    coli
    BW25113
    679895    		 39300229 Assembly1
    rna:A:2~1534 31~33,35,39,41~42
    rna:a:1~2903 11~12,25~26,74~76
    rna:W:14~25 35~38
    13979 8yus:W
    (2.43Å)
    		 12 N/A N/A N/A Escherichia
    coli
    562    		 39300229 Assembly1
    rna:A:2~1534 14~15,17~21,23~24
    rna:V:1~76 17~19
    rna:X:1~76 20~24
    13980 8yus:X
    (2.43Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0002F10448 RF00005 Pseudomonas
    putida
    NBRC
    14164
    1211579    		 39300229 Assembly1
    rna:A:2~1534 34~37
    rna:a:1~2903 19~20,37~38,52,56,63,74~76
    rna:W:14~25 34~37
    13981 8yus:a
    (2.43Å)
    		 2753 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    562    		 39300229 Assembly1
    rna:A:2~1534 1700~1704,1832,1837,1846,1848,
    1912~1916,1919~1920,1947~1948,
    1950,1959~1961
    rna:b:1~119 861~863,915,917~919,958,2340
    rna:V:1~76 1907~1909,1922~1923,2251~2253,
    2450~2451,2602
    rna:X:1~76 882~883,896,1913,2470,2482~248
    3,2506~2507,2553~2555,2583~258
    5
    13982 8yus:b
    (2.43Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 39300229 Assembly1
    rna:a:1~2903 41,78~81,89,96~97,99~100
    13983 8yzl:A

    		 10 N/A URS0003054941 N/A Homo
    sapiens
    9606    		 N/A Assembly1
    rna:B:11~20 1~10
    13984 8yzl:B

    		 10 N/A URS0003054941 N/A Homo
    sapiens
    9606    		 N/A Assembly1
    rna:A:1~10 11~20
    13985 8z4j:M
    (2.97Å)
    		 38 N/A URS00029EB35A N/A metagenome
    256318    		 39143216 Assembly1
    rna:N:-16~37 1~4,6~10,12~16,18~22,24~28
    13986 8z4j:N
    (2.97Å)
    		 34 N/A URS00029EB31B N/A metagenome
    256318    		 39143216 Assembly1
    rna:M:-9~29 9~13,15~25,27~31,33~36
    13987 8z4l:M
    (2.85Å)
    		 49 N/A URS00029EB35A N/A metagenome
    256318    		 39143216 Assembly1
    rna:N:-16~37 1~4,6~10,12~16,18~22,24~28,30~
    34
    13988 8z4l:N
    (2.85Å)
    		 40 N/A URS00029EB31B N/A metagenome
    256318    		 39143216 Assembly1
    rna:M:-9~40 3~7,9~13,15~25,27~31,33~36
    13989 8z70:2
    (3.2Å)
    		 1771 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002F12C84 RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:s:1~77 577,1274,1756
    rna:t:1~76 1001,1462~1463,1576~1577,1637
    rna:A:3~3396 320,628~629,891,913,971~972,16
    44~1645,1655~1657,1667,1746~17
    47,1757~1759,1780
    13990 8z70:A
    (3.2Å)
    		 3187 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632E RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:2:1~1799 846~848,1918,1935~1936,2125,22
    05~2207,2255,2261~2262,2290~22
    92,2302~2304
    rna:t:1~76 2265,2406,2619~2620,2623,2819~
    2820
    rna:B:1~121 996~998,1054~1055,1171,1197,12
    03
    rna:C:1~158 3~23,59,143~144,330~337,340~34
    1,345~346,349,351,368~369,404~
    419,656~657,691,1394~1395,1398
    ~1399,1419,1441,1530,1558,1584
    ~1585,1617~1618,1830~1832,2386
    ,2585,2994~2995
    13991 8z70:B
    (3.2Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:A:3~3396 79~81,86,90,100,102~103
    13992 8z70:C
    (3.2Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:A:3~3396 1~22,24~37,40~41,53~54,104,109
    ,113~115,125~126,129,138~152,1
    54~155,157
    13993 8z70:s
    (3.2Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS0002F12C6C RF00005 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:2:1~1799 35~36,38~39
    rna:A:3~3396 19,57
    13994 8z70:t
    (3.2Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00021ED942 RF00005 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:2:1~1799 30~31,34,38~41
    rna:A:3~3396 12,74~76
    13995 8z71:2
    (3.6Å)
    		 1771 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002F12C84 RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:s:1~77 577,1274,1756
    rna:t:1~76 1001,1462~1463,1576~1577,1637
    rna:A:3~3396 320,628~629,891,913,971~972,16
    44~1645,1655~1657,1667,1746~17
    47,1757~1759,1780
    13996 8z71:A
    (3.6Å)
    		 3187 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632E RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:2:1~1799 846~848,1918,1935~1936,2125,22
    05~2207,2255,2261~2262,2290~22
    92,2302~2304
    rna:t:1~76 2265,2406,2619~2620,2623,2819~
    2820
    rna:B:1~121 996~998,1054~1055,1171,1197,12
    03
    rna:C:1~158 3~23,59,143~144,330~337,340~34
    1,345~346,349,351,368~369,404~
    419,656~657,691,1394~1395,1398
    ~1399,1419,1441,1530,1558,1584
    ~1585,1617~1618,1830~1832,2386
    ,2585,2994~2995
    13997 8z71:B
    (3.6Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:A:3~3396 79~81,86,90,100,102~103
    13998 8z71:C
    (3.6Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:A:3~3396 1~22,24~37,40~41,53~54,104,109
    ,113~115,125~126,129,138~152,1
    54~155,157
    13999 8z71:s
    (3.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS0002F12C6C RF00005 Oryctolagus
    cuniculus
    9986    		 39789210 Assembly1
    rna:2:1~1799 35~36,38~39
    rna:A:3~3396 19,57
    14000 8z71:t
    (3.6Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00021ED942 RF00005 Saccharomyces
    cerevisiae
    S288C
    559292    		 39789210 Assembly1
    rna:2:1~1799 30~31,34,38~41
    rna:A:3~3396 12,74~76
    << < 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.