SEQ2FUN

FURNA
Download all results in tab-seperated text for 16611 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    14501 9erf:T
    (2.64Å)
    		 48 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0002F12C8B RF00005 Homo
    sapiens
    9606    		 39627193
    1075    		 Assembly1
    rna:U:66~69 3~6,65
    14502 9esh:1
    (3.2Å)
    		 29 N/A N/A N/A Schizosaccharomyces
    pombe
    4896    		 39833470 Assembly1
    rna:5:7~108 -5~-2,0
    rna:6:1~92 -2,3~6
    14503 9esh:2
    (3.2Å)
    		 24 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS0000868541 RF00004 Schizosaccharomyces
    pombe
    4896    		 39833470 Assembly1
    rna:6:1~92 3~6,8~9,11~14,19~22,25~28
    14504 9esh:5
    (3.2Å)
    		 102 GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    GO:0005730 (C) nucleolus    		 URS000086853C RF00020 Schizosaccharomyces
    pombe
    4896    		 39833470 Assembly1
    rna:1:-15~13 49~53
    rna:6:1~92 51~52
    14505 9esh:6
    (3.2Å)
    		 92 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS0000868525 RF00026 Schizosaccharomyces
    pombe
    4896    		 39833470 Assembly1
    rna:1:-15~13 36~39,65,67
    rna:2:3~30 41,43~50,73,76~77,79~80,83,86~
    89,91
    rna:5:7~108 61,63~64
    14506 9esi:1
    (3.1Å)
    		 29 N/A N/A N/A Schizosaccharomyces
    pombe
    4896    		 39833470 Assembly1
    rna:5:7~108 -5~-2
    rna:6:1~92 -2,3~6
    14507 9esi:2
    (3.1Å)
    		 24 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS0000868541 RF00004 Schizosaccharomyces
    pombe
    4896    		 39833470 Assembly1
    rna:6:1~92 3~6,8~9,11~14,19~22,25~28
    14508 9esi:5
    (3.1Å)
    		 102 GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    GO:0005730 (C) nucleolus    		 URS000086853C RF00020 Schizosaccharomyces
    pombe
    4896    		 39833470 Assembly1
    rna:6:1~92 51~52
    rna:1:-15~13 50~53
    14509 9esi:6
    (3.1Å)
    		 92 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS0000868525 RF00026 Schizosaccharomyces
    pombe
    4896    		 39833470 Assembly1
    rna:2:3~30 41,43~50,73,76~77,79,83,86~89,
    91
    rna:5:7~108 61,63~64
    rna:1:-15~13 36~39,65,67
    14510 9evs:1
    (3.05Å)
    		 2922 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Brassica
    oleracea
    var.
    botrytis
    3715    		 41330901 Assembly1
    rna:3:1~118 1006~1008,1065~1066,1098
    rna:5:2~76 2225~2226,2240~2241,2382,2560~
    2562,2755~2756,2890,2907
    rna:2:3~1848 2045,2170~2171,2230~2231,2237~
    2238,2265~2268,2278~2279
    14511 9evs:2
    (3.05Å)
    		 1591 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177 Brassica
    oleracea
    var.
    botrytis
    3715    		 41330901 Assembly1
    rna:1:16~3169 698,1669~1671,1681~1682,1691,1
    792~1793,1802~1804,1826
    rna:5:2~76 786,959,1492,1600~1602,1662
    rna:6:1~6 689,919,1662,1664,1807
    14512 9evs:3
    (3.05Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000240B4B RF00001 Brassica
    oleracea
    var.
    botrytis
    3715    		 41330901 Assembly1
    rna:1:16~3169 81~83,87,95,97~98
    14513 9evs:5
    (3.05Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Brassica
    oleracea
    var.
    botrytis
    3715    		 41330901 Assembly1
    rna:1:16~3169 12~13,24~25,74~76
    rna:2:3~1848 30~31,34,38,40~41
    rna:6:1~6 34~37
    14514 9f0j:X
    (3.35Å)
    		 15 N/A URS0000E60B84 N/A Mus
    musculus
    10090    		 40450684 Assembly1
    rna:Z:1~15 1~15
    14515 9f0j:Z
    (3.35Å)
    		 15 N/A URS0000E60BC3 N/A Mus
    musculus
    10090    		 40450684 Assembly1
    rna:X:1~15 1~15
    14516 9f1b:A2
    (3.01Å)
    		 1770 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119C9 RF01960 Oryctolagus
    cuniculus
    9986    		 39169182 Assembly1
    rna:AT:1~76 1059,1249,1525~1526,1640~1642
    rna:B5:1~4808 678~679,971,1030,1181,1709~171
    1,1720~1722,1732,1816~1817,182
    5~1829,1850
    rna:AH:1111~1113 1208,1703~1705,1831,1838
    14517 9f1b:AT
    (3.01Å)
    		 76 N/A N/A N/A Oryctolagus
    cuniculus
    9986    		 39169182 Assembly1
    rna:B5:1~4808 12,24~25,74~76
    rna:A2:1~1870 30~32,34,38~41
    14518 9f1b:B5
    (3.01Å)
    		 3706 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000231197F RF02543 Oryctolagus
    cuniculus
    9986    		 39169182 Assembly1
    rna:AT:1~76 3487,3501~3503,3942~3944,3946,
    4142~4143,4294
    rna:B7:2~120 1675~1677,1680,1731,1733~1734,
    1833,1848,1875,1881
    rna:B8:1~156 1~22,58,146,193~194,339,341~34
    8,350~353,356~357,360,362,379~
    380,415~430,1248~1249,1277~127
    8,1315,2151~2152,2155~2156,217
    6~2177,2198,2287,2315,2329~233
    1,2336,2351,2385~2389,2621~262
    3,3622,4318
    rna:A2:1~1870 1518~1519,2727~2728,3361,3427,
    3444,3491~3492,3494~3495,3498~
    3499,3526~3528,3538~3539,3566
    14519 9f1b:B7
    (3.01Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000231198C RF00001 Oryctolagus
    cuniculus
    9986    		 39169182 Assembly1
    rna:B5:1~4808 77~79,84,88,98,100~101,103
    14520 9f1b:B8
    (3.01Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119A4 RF00002 Oryctolagus
    cuniculus
    9986    		 39169182 Assembly1
    rna:B5:1~4808 1,3~22,24~37,40~41,53~54,68~69
    ,103,108,110~113,115,123~128,1
    36,138~149,151~156
    14521 9f1c:A2
    (3.78Å)
    		 1770 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119C9 RF01960 Oryctolagus
    cuniculus
    9986    		 39169182 Assembly1
    rna:AH:1111~1113 1208,1831
    rna:AT:1~76 1059,1249,1525~1526,1640~1642
    rna:B5:1~4808 971,1030~1031,1181,1709~1711,1
    720,1722,1732,1816,1825,1827~1
    828,1850
    14522 9f1c:AT
    (3.78Å)
    		 76 N/A N/A N/A Oryctolagus
    cuniculus
    9986    		 39169182 Assembly1
    rna:B5:1~4808 12,24,74~76
    rna:A2:1~1870 30~31,34,38,41
    14523 9f1c:B5
    (3.78Å)
    		 3706 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000231197F RF02543 Oryctolagus
    cuniculus
    9986    		 39169182 Assembly1
    rna:B7:2~120 1675~1677,1680,1731,1733~1734,
    1848,1875,1881
    rna:AT:1~76 3502,3942~3943,4142~4143
    rna:B8:1~156 1~22,58,146,339,341~348,350~35
    3,356~357,360,362,379~380,415~
    430,1248~1249,1277~1278,1315,2
    151~2152,2156,2176,2198,2287,2
    330~2331,2336,2351,2385~2387,2
    389,2621~2622,3622
    rna:A2:1~1870 1518~1520,2727,3361,3444,3491~
    3492,3498~3499,3538
    14524 9f1c:B7
    (3.78Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 39169182 Assembly1
    rna:B5:1~4808 77~79,84,88,98,100~101,103
    14525 9f1c:B8
    (3.78Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119A4 RF00002 Oryctolagus
    cuniculus
    9986    		 39169182 Assembly1
    rna:B5:1~4808 3~22,24~37,40~41,53,103,108,11
    2~113,123~128,138~149,151~156
    14526 9f1d:A2
    (3.26Å)
    		 1770 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119C9 RF01960 Oryctolagus
    cuniculus
    9986    		 39169182 Assembly1
    rna:B5:1~4808 678~679,971,1030~1031,1181,170
    9~1711,1720~1722,1732,1816~181
    7,1825,1827~1829,1850
    rna:AH:1111~1113 1208,1831
    rna:AT:1~76 1059,1249,1525~1526,1640~1642
    14527 9f1d:AT
    (3.26Å)
    		 76 N/A N/A N/A Oryctolagus
    cuniculus
    9986    		 39169182 Assembly1
    rna:B5:1~4808 12,24,74~76
    rna:A2:1~1870 30~31,34,38~41
    14528 9f1d:B5
    (3.26Å)
    		 3706 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000231197F RF02543 Oryctolagus
    cuniculus
    9986    		 39169182 Assembly1
    rna:B7:2~120 1675~1677,1680,1733~1734,1848,
    1875,1881
    rna:AT:1~76 3502,3942~3944,4142~4143,4294
    rna:B8:1~156 1~22,58,146,339,341~348,350~35
    3,356~357,360,362,379~380,415~
    430,1248~1249,1277~1278,1315,2
    151~2152,2155~2156,2176~2177,2
    198,2287,2329~2331,2336,2351~2
    352,2385~2387,2389,2621~2623,3
    622
    rna:A2:1~1870 1518~1520,2727~2728,3361,3427,
    3444,3491~3492,3494~3495,3498~
    3499,3526~3528,3538~3539
    14529 9f1d:B7
    (3.26Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 39169182 Assembly1
    rna:B5:1~4808 77~79,84,88,98,100~101,103
    14530 9f1d:B8
    (3.26Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119A4 RF00002 Oryctolagus
    cuniculus
    9986    		 39169182 Assembly1
    rna:B5:1~4808 3~22,24~37,40~41,53~54,103,108
    ,110~113,115,123~128,136,138~1
    49,151~156
    14531 9f1u:X
    (3.67Å)
    		 14 N/A URS0002311A2C N/A Mus
    musculus
    10090    		 40450684 Assembly1
    rna:Z:1~14 1~14
    14532 9f1u:Z
    (3.67Å)
    		 14 N/A URS0002311966 N/A Mus
    musculus
    10090    		 40450684 Assembly1
    rna:X:1~14 1~14
    14533 9f20:X
    (4.13Å)
    		 15 N/A URS0000E60BB0 N/A Mus
    musculus
    10090    		 40450684 Assembly1
    rna:Y:1~15 1~15
    14534 9f20:Y
    (4.13Å)
    		 15 N/A URS0000E60BD6 N/A Mus
    musculus
    10090    		 40450684 Assembly1
    rna:X:1~15 1~15
    14535 9f2l:X
    (3.86Å)
    		 14 N/A URS0000E60BBD N/A Mus
    musculus
    10090    		 40450684 Assembly1
    rna:Y:1~14 1~14
    14536 9f2l:Y
    (3.86Å)
    		 14 N/A URS0000E60BDD N/A Mus
    musculus
    10090    		 40450684 Assembly1
    rna:X:1~14 1~14
    14537 9f2r:R
    (1.959Å)
    		 15 N/A URS0000EEAD16 N/A Influenza
    A
    virus
    11320    		 N/A Assembly1
    rna:V:1~16 5~9
    14538 9f2r:V
    (1.959Å)
    		 16 N/A URS000080DFE6 N/A Influenza
    A
    virus
    11320    		 N/A Assembly1
    rna:R:4~18 11~15
    14539 9f2w:X
    (4.21Å)
    		 14 N/A URS0002311A2C N/A Mus
    musculus
    10090    		 40450684 Assembly1
    rna:Y:1~14 1~14
    14540 9f2w:Y
    (4.21Å)
    		 14 N/A URS0002311966 N/A Mus
    musculus
    10090    		 40450684 Assembly1
    rna:X:1~14 1~14
    14541 9f37:R
    (1.905Å)
    		 15 N/A URS0000EEAD16 N/A Influenza
    A
    virus
    11320    		 N/A Assembly1
    rna:V:1~16 5~9
    14542 9f37:V
    (1.905Å)
    		 16 N/A URS000080DFE6 N/A Influenza
    A
    virus
    11320    		 N/A Assembly1
    rna:R:4~18 11~15
    14543 9f3p:X
    (3.97Å)
    		 15 N/A URS0000E60BB0 N/A Mus
    musculus
    10090    		 40450684 Assembly1
    rna:Y:1~15 1~15
    14544 9f3p:Y
    (3.97Å)
    		 15 N/A URS0000E60BD6 N/A Mus
    musculus
    10090    		 40450684 Assembly1
    rna:X:1~15 1~15
    14545 9f58:4
    (3.1Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 40198700
    441    		 Assembly1
    rna:a:3~3396 1~22,24~33,35~37,40~41,53~54,1
    04,109,113~115,125~126,129,136
    ~157
    14546 9f58:a
    (3.1Å)
    		 3134 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    4932    		 40198700
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:4:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,398,404~
    419,656~657,691,1394~1395,1398
    ~1399,1418~1420,1441~1442,1530
    ,1558,1584,1618,1620,1830~1832
    ,2386,2585,2994~2995
    rna:b:1~121 996~998,1052~1056,1156,1171,11
    97,1203
    14547 9f58:b
    (3.1Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 40198700 Assembly1
    rna:a:3~3396 79~82,86,90,100,102~103
    14548 9f9s:CM
    (2.9Å)
    		 41 N/A N/A N/A Saccharomyces
    cerevisiae
    4932    		 39566505
    31588918
    562    		 Assembly1
    rna:CP:1~76 35~37
    rna:S1:1~1799 31~32,34~38,41
    rna:R1:1~1800 4,6~12,22
    rna:DQ:1~77 7~9
    rna:DP:1~76 10~13
    14549 9f9s:CP
    (2.9Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E1EA RF00005 Saccharomyces
    cerevisiae
    4932    		 39566505
    31588918    		 Assembly1
    rna:CM:1~41 34~37
    rna:L1:3~3396 12,74~76
    rna:S1:1~1799 30~32,34,38~41
    14550 9f9s:DP
    (2.9Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 39566505
    31588918    		 Assembly1
    rna:CM:1~41 34~37
    rna:R1:1~1800 34~37
    rna:M1:3~3396 37~38,56,75~76
    14551 9f9s:DQ
    (2.9Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Saccharomyces
    cerevisiae
    4932    		 39566505
    31588918    		 Assembly1
    rna:CM:1~41 35~36,38
    rna:R1:1~1800 31~33,35,39~42
    rna:M1:3~3396 20,57,76~77
    14552 9f9s:L1
    (2.9Å)
    		 3116 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    4932    		 39566505
    31588918
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:CP:1~76 2266,2619~2621,2819~2820,2971
    rna:L2:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1399,141
    9~1420,1441,1530,1558,1584~158
    5,1618,1830~1832,2386,2585,299
    4~2995
    rna:L3:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1203
    rna:S1:1~1799 846~848,1935~1936,2125,2191,21
    96,2207,2255~2259,2262~2263,22
    90~2292,2302~2303
    14553 9f9s:L2
    (2.9Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 39566505
    31588918
    441    		 Assembly1
    rna:L1:3~3396 1~22,24~33,35~37,40,53~54,104,
    109,112~115,118,126,129,136,13
    8~155,157
    14554 9f9s:L3
    (2.9Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 39566505
    31588918    		 Assembly1
    rna:L1:3~3396 79~82,86,90,100,102~104
    14555 9f9s:M1
    (2.9Å)
    		 3190 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    4932    		 39566505
    31588918
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:R1:1~1800 846~848,2124~2125,2206,2255~22
    59,2262~2263,2290~2292,2302~23
    04
    rna:M3:1~121 996~998,1052,1054~1055,1156,11
    71,1197,1203
    rna:M2:1~158 3~23,59,330~337,339~342,345~34
    6,349,351,368~369,404~419,656~
    657,691,1394~1395,1398~1399,14
    18~1420,1441,1530,1558,1618~16
    19,1830~1832,2386,2585,2994~29
    95
    rna:DQ:1~77 2454,2484,2764~2765,2793~2794
    rna:DP:1~76 2256,2678,2876,2922,2952~2954
    14556 9f9s:M2
    (2.9Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 39566505
    31588918
    441    		 Assembly1
    rna:M1:3~3396 1,3~22,24~33,35~37,40~41,53~54
    ,104,109,112~115,125~126,129,1
    36~157
    14557 9f9s:M3
    (2.9Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 39566505
    31588918    		 Assembly1
    rna:M1:3~3396 79~81,86,90,100,102~103
    14558 9f9s:R1
    (2.9Å)
    		 1758 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2C2D RF01960 Saccharomyces
    cerevisiae
    4932    		 39566505
    31588918
    101

    441

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:CM:1~41 489,577,904,1150,1634,1637~163
    8,1755~1756,1761
    rna:M1:3~3396 628,913,971~973,1644~1646,1655
    ~1657,1746~1747,1757~1759,1780
    rna:DQ:1~77 1001,1191,1462~1463,1575~1577,
    1637
    rna:DP:1~76 577,1274,1756
    14559 9f9s:S1
    (2.9Å)
    		 1771 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2C2D RF01960 Saccharomyces
    cerevisiae
    4932    		 39566505
    31588918
    101

    441

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:CM:1~41 904,1150,1634,1637~1638,1640,1
    756,1761
    rna:CP:1~76 1001,1191,1462~1463,1575~1577,
    1637
    rna:L1:3~3396 628~630,913,970~972,995,1123,1
    644~1646,1655~1657,1667,1746~1
    747,1755~1759,1780
    14560 9fbv:A
    (2.4Å)
    		 1519 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177 Escherichia
    coli
    BW25113
    679895    		 38826346 Assembly1
    rna:a:1~2903 702,783~784,899,1407~1409,1418
    ,1420,1428~1429,1473~1475,1483
    ~1484,1493~1496,1517
    rna:X:16~18 926,1400~1402,1498
    rna:Z:2~76 790,966,1229~1230,1338~1340,14
    00
    14561 9fbv:Z
    (2.4Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    BW25113
    679895    		 38826346 Assembly1
    rna:a:1~2903 11~13,24~25,74~76
    rna:X:16~18 34~37
    rna:A:2~1534 30~32,34,38~41
    14562 9fbv:a
    (2.4Å)
    		 2753 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023358D7 RF02541 Escherichia
    coli
    BW25113
    679895    		 38826346 Assembly1
    rna:b:1~119 861~864,915~919,958,2339~2340
    rna:A:2~1534 1689,1700~1704,1832,1836~1837,
    1846,1848,1895,1912~1916,1919~
    1920,1947~1950,1959~1961
    rna:Z:2~76 1907~1909,1922~1924,2063~2064,
    2251~2253,2450~2451,2602
    14563 9fbv:b
    (2.4Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    BW25113
    679895    		 38826346 Assembly1
    rna:a:1~2903 41,78~81,89~90,96~97,99~100
    14564 9fco:B
    (2.4Å)
    		 1046 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000340221E RF00177 Escherichia
    coli
    562    		 40075065 Assembly1
    rna:Y:19~24 693,788~790,795,926,1400,1506
    14565 9fhl:2
    (2.5Å)
    		 1430 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0003054927 RF01959 Saccharolobus
    solfataricus
    P2
    273057    		 39753558 Assembly1
    rna:5:1~3 889,1364~1365,1455
    rna:s:806~815 682,1488,1490~1496
    rna:4:27~43 749,930,1192~1193,1302~1304,13
    64
    14566 9fhl:4
    (2.5Å)
    		 17 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000B21E07 RF00005 Saccharolobus
    solfataricus
    P2
    273057    		 39753558 Assembly1
    rna:2:1~1496 30~32,34,38,40~41
    rna:5:1~3 34~37
    14567 9fhl:s
    (2.5Å)
    		 10 N/A N/A N/A Saccharolobus
    solfataricus
    P2
    273057    		 39753558 Assembly1
    rna:2:1~1496 807~810,812~813,815
    14568 9fi8:bN
    (3.6Å)
    		 58 N/A URS0002F12C9C N/A Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:hB:2~57 67~69,71,73~74,77,96,101,105~1
    06,108
    rna:hG:5~72 74~82,87~88,90,93,97~98,100,10
    3,112~116,118~119
    rna:hL:9~41 108~109
    rna:hR:6~32 93,98,112~113
    14569 9fi8:hB
    (3.6Å)
    		 56 N/A URS0002F12C7A N/A Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:bN:62~119 13,18,21~22,37,39,41~44,55
    rna:hG:5~72 14,43
    rna:hL:9~41 2~5,9,11~13,31~32,39~40
    14570 9fi8:hD
    (3.6Å)
    		 15 N/A URS00003F2B93 N/A Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:hL:9~41 8,10
    14571 9fi8:hG
    (3.6Å)
    		 68 N/A URS0002F12C98 N/A Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:bN:62~119 13~15,17~18,30~31,33~37,60~68
    rna:hB:2~57 65~66,70
    rna:hL:9~41 68,71
    rna:hR:6~32 6,8~17,19,21,23~26,29
    14572 9fi8:hL
    (3.6Å)
    		 33 N/A URS0002F12CA2 N/A Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:bN:62~119 36~38
    rna:hB:2~57 9~10,24~26,31~34,38
    rna:hD:1~15 9,12
    rna:hG:5~72 20~21,24
    14573 9fi8:hR
    (3.6Å)
    		 27 N/A URS0002F12C96 N/A Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:bN:62~119 12~13,17,24~25
    rna:hG:5~72 10~18,20~21,23,25~30
    14574 9fia:b2
    (3.29Å)
    		 30 N/A URS0002F12C77 N/A Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:bN:1~61 20~26,28~29,31,46~48
    rna:bT:1~52 26~27,32,35~41,43~46
    14575 9fia:b4
    (3.29Å)
    		 27 N/A URS0002F12CA5 N/A Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:bQ:1~14 11~12,15~18
    14576 9fia:bA
    (3.29Å)
    		 27 N/A URS0002F12C6E N/A Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:bE:1~92 1~13
    rna:bS:1~31 10,24,26
    14577 9fia:bD
    (3.29Å)
    		 25 N/A URS0002F12C83 N/A Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:bJ:8~65 3~5,8~9,12
    rna:bK:1~66 3,5
    rna:bL:1~48 10~12,14~15,18~19
    rna:bR:1~19 15~16,19~23
    14578 9fia:bE
    (3.29Å)
    		 92 N/A URS0002F12C72 N/A Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:bA:1~27 1,3,5~11,13~17
    rna:bN:1~61 23,87~88
    rna:bO:1~115 21~22,24~25,27~31,81,85~86
    rna:bP:1~15 52~53
    rna:bS:1~31 43,85,92
    rna:bT:1~52 32~34,47,58,60~61,78~81
    14579 9fia:bJ
    (3.29Å)
    		 58 N/A URS0002F12C99 N/A Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:bD:3~27 16~17,40~42,51
    rna:bI:1~3 55~56
    rna:bK:1~66 14~15,17~20,24,26~29,41,43,47~
    48,57,59~61
    14580 9fia:bK
    (3.29Å)
    		 66 N/A URS0002F12CA0 N/A Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:bD:3~27 54,56~57
    rna:bG:1~4 32~34
    rna:bI:1~3 31~35
    rna:bJ:8~65 24,29,35~36,41~42,46~51,55~56,
    59
    rna:bL:1~48 22,37~38
    rna:bN:1~61 8~10,12~13
    rna:bO:1~115 1~3,11,15~18,20,23~28
    14581 9fia:bL
    (3.29Å)
    		 48 N/A URS0002F12C95 N/A Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:bD:3~27 14~16,42~43
    rna:bK:1~66 36~38
    rna:bO:1~115 6,23~24,34~35
    rna:bR:1~19 1~3,8~9,14
    14582 9fia:bN
    (3.29Å)
    		 50 N/A URS0002F12C74 N/A Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:b2:19~48 15,40,51~55,58~61
    rna:bE:1~92 2~5
    rna:bK:1~66 10,43~44,47~48
    rna:bO:1~115 3,5~9,47
    rna:bR:1~19 33,35
    rna:bT:1~52 15~16,40~41,55~57
    14583 9fia:bO
    (3.29Å)
    		 115 N/A URS0002F12C7D N/A Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:bE:1~92 97,102,104,106~109,112~113
    rna:bK:1~66 4,11~13,48~49,75~80,82,85~87,9
    9
    rna:bL:1~48 16~17,83,111
    rna:bN:1~61 94~96,98,100~103,113
    14584 9fia:bP
    (3.29Å)
    		 15 N/A URS00003F2B93 N/A Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:bE:1~92 8~10
    14585 9fia:bQ
    (3.29Å)
    		 14 N/A URS000080DD9D N/A Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:b4:1~27 3~5,7,10~11
    14586 9fia:bR
    (3.29Å)
    		 19 N/A URS0002F12C90 N/A Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:bD:3~27 1~4,6
    rna:bL:1~48 6,13,15~17
    rna:bN:1~61 10,12
    14587 9fia:bS
    (3.29Å)
    		 31 N/A URS0001CF654C N/A Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:bA:1~27 5,8,11,16~17
    rna:bE:1~92 10,23,25,27
    rna:bK:1~66 30~31
    14588 9fia:bT
    (3.29Å)
    		 52 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002F12C6F RF02542 Toxoplasma
    gondii
    5811    		 39690155 Assembly1
    rna:b2:19~48 3~7,9,11~12,14~17,33
    rna:bE:1~92 12,21,26~27,37~38,40~42,44
    rna:bN:1~61 1,3~5,17~19
    14589 9fib:B
    (2.3Å)
    		 1045 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0003402219 RF00177 Escherichia
    coli
    562    		 40075065 Assembly1
    rna:Y:21~35 790,926,1400
    14590 9fib:Y
    (2.3Å)
    		 15 N/A N/A N/A Escherichia
    coli
    562    		 40075065 Assembly1
    rna:B:1~1533 21~22,24
    14591 9fmd:2
    (3.3Å)
    		 120 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00029EB311 RF00004 Homo
    sapiens
    9606    		 38925148
    30705154
    M068_0.6

    504

    M055_0.6

    97    		 Assembly1
    rna:6:1~97 1~12,16~17,19~22,25~28
    rna:IN:1~167 31~33,35~46
    14592 9fmd:5
    (3.3Å)
    		 92 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS0000118C49 RF00020 Homo
    sapiens
    9606    		 38925148
    30705154
    M150_0.6

    42

    M025_0.6

    M075_0.6

    185

    s67

    M158_0.6    		 Assembly1
    rna:6:1~97 42~43
    rna:EX:-12~2 40~44
    14593 9fmd:6
    (3.3Å)
    		 97 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000035C796 RF00026 Homo
    sapiens
    9606    		 38925148
    30705154
    1334

    1124

    s59

    M021_0.6    		 Assembly1
    rna:2:1~184 47,49~56,80,82~83,87~88,90~97
    rna:5:9~115 67,69~70
    rna:EX:-12~2 53~54,71
    rna:IN:1~167 29~45,52,73
    14594 9fmd:EX
    (3.3Å)
    		 14 N/A URS0002335924 N/A Human
    adenovirus
    2
    10515    		 38925148
    30705154    		 Assembly1
    rna:5:9~115 -5~-1,1
    rna:6:1~97 -2~-1,1~2
    14595 9fmd:IN
    (3.3Å)
    		 42 N/A N/A N/A Human
    adenovirus
    2
    10515    		 38925148
    30705154    		 Assembly1
    rna:2:1~184 132~142,145~147
    rna:6:1~97 1~17,167
    14596 9fqz:CC
    (2.85Å)
    		 22 N/A N/A N/A Homo
    sapiens
    9606    		 N/A Assembly1
    rna:S2:1~1871 30~32,34,40~41
    14597 9fqz:L5
    (2.85Å)
    		 3475 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02540
    RF02543
    RF02541    		 Homo
    sapiens
    9606    		 N/A
    M054_0.6

    1306

    769

    1303

    762

    872

    1148

    1149

    764

    21

    1079

    930

    1029

    1072

    1073

    s77

    1071

    819

    1373

    938

    546

    s52

    s50

    931

    M272_0.6

    936

    s59

    995

    994

    1314

    991

    1312

    1311

    1150

    123

    124

    125

    1068

    s72

    1060

    s100

    s102

    52

    M227_0.6

    1384

    821

    926

    822

    1128

    988

    1321

    595

    705

    1328

    707

    1124

    987

    1126

    703

    M290_0.6

    83

    1181

    797

    796

    795

    836

    837

    791

    790

    838

    1334

    s70

    1016

    1017

    1393

    1272

    1012

    1013

    1236

    1237

    763

    1231

    1232

    1233

    1335

    s17

    M109_0.6

    1336

    1331

    1239

    1333

    589

    776

    s96

    s99

    M273_0.6

    1389

    902

    900

    901

    906

    905

    33

    375

    970

    M044_0.6

    1245

    1183

    s62

    s61

    1227

    1164

    M035_0.6

    1223

    1165

    M320_0.6

    1127

    1347

    60

    s81

    M349_0.6

    1083

    977

    976

    974

    852

    853

    M154_0.6

    884

    s55

    979

    M153_0.6

    183

    1238

    185

    1375

    815

    1036

    706

    1034

    1035

    1212

    M102_0.6

    1211

    1216

    M083_0.6

    986

    467

    M148_0.6

    1354

    708

    M103_0.6

    169

    91

    167

    M070_0.6

    1026

    M020_0.6

    M050_0.6

    1187

    1182

    1028

    1037

    727

    M347_0.6

    722

    935

    M086_0.6

    883

    604

    1166

    606

    886

    156

    748

    749

    608

    545

    M061_0.6

    s48

    1055

    878

    879

    1059

    953

    952

    42

    954

    957

    1107

    1352

    774

    1215

    M104_0.6

    1173

    770

    773

    958

    1271

    610

    1273

    779

    778

    1178

    78

    1285

    1042

    1041

    1040

    1043

    1045

    1044

    1288

    354

    688

    1360

    684

    800    		 Assembly1
    rna:L8:1~156 1~22,58,146,193,339,341~348,35
    0~354,356~357,360,362,379~380,
    415~430,1304~1305,1333~1334,13
    71,2308~2309,2312~2313,2332~23
    34,2355~2356,2444,2472,2508~25
    09,2543,2778~2780,3890,4572
    rna:S2:1~1871 1563~1565,2884,3628~3629,3709,
    3759~3763,3766~3767,3794~3796,
    3806~3808
    rna:L7:1~119 1736~1739,1741,1792~1796,1894,
    1909,1936,1942
    14598 9fqz:L7
    (2.85Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Homo
    sapiens
    9606    		 N/A
    931

    1290

    s51

    879    		 Assembly1
    rna:L5:1~5069 77~80,84,88,98,100~103
    14599 9fqz:L8
    (2.85Å)
    		 155 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00002 Homo
    sapiens
    9606    		 N/A
    1227

    592

    M106_0.6

    993

    1215

    1352

    s37

    1238

    1178

    M085_0.6

    1389

    1360

    589

    706    		 Assembly1
    rna:L5:1~5069 1,3~22,24~37,40~41,53~54,68,10
    3,108,110~113,115,127,136,138~
    149,151~156
    14600 9fqz:S2
    (2.85Å)
    		 1598 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF01960
    RF02542
    RF01959
    RF00177    		 Homo
    sapiens
    9606    		 N/A
    1323

    988

    M074_0.6

    1327

    1213

    1263

    749

    1267

    43

    60

    1167

    692

    974

    M037_0.6

    1311

    878

    970

    1274

    838

    1195

    346

    870

    819

    639

    546

    325

    1378

    930

    1393

    1392

    s59

    1390

    M296_0.6

    1236

    756

    M141_0.6

    1335

    779

    M109_0.6

    M148_0.6

    1238

    M273_0.6

    1011

    1355

    M065_0.6

    s99

    872

    335

    M070_0.6

    902

    786

    813

    M147_0.6

    M050_0.6

    1188

    1187

    1079

    1124

    s102

    815

    1333

    924

    954

    47

    1386

    M016_0.6

    1380

    926

    804    		 Assembly1
    rna:CC:23~44 1524~1525,1639~1641,1870
    rna:L5:1~5069 677~678,970,1028~1030,1708~171
    1,1719~1721,1731,1815~1816,182
    6~1828,1849
    << < 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.