SEQ2FUN

FURNA
Download all results in tab-seperated text for 16611 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    15001 9hqv:SU
    (2.52Å)
    		 54 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:SJ:1~93 13,22,24~28,30~32,37~43,45
    rna:SK:1~120 2~6,18~19,21
    rna:SR:1~34 1,3~8,10~13,15~18,20,33~35
    15002 9hqv:TP
    (2.52Å)
    		 21 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:SQ:1~56 28~30,38~39
    15003 9hrd:A
    (2.5Å)
    		 67 N/A N/A N/A synthetic
    construct
    32630    		 41422825 Assembly1
    rna:B-2:2~68 16,26,28,30,35,50
    15004 9hrd:B
    (2.5Å)
    		 67 N/A N/A N/A synthetic
    construct
    32630    		 41422825
    rna:A:2~68 6~7,9~10,21~22,41~42,45
    rna:D:2~68 18,57
    15005 9hrd:C
    (2.5Å)
    		 67 N/A N/A N/A synthetic
    construct
    32630    		 41422825 Assembly2
    rna:D:2~68 16,26,30,35,50
    15006 9hrd:D
    (2.5Å)
    		 67 N/A N/A N/A synthetic
    construct
    32630    		 41422825 Assembly2
    rna:C:2~68 16~17,26,35,50,60
    15007 9hrg:A
    (2.05Å)
    		 68 N/A N/A N/A synthetic
    construct
    32630    		 41422825 Assembly1
    rna:B:1~68 6~7,9~10,21~22,41~42,45
    15008 9hrg:B
    (2.05Å)
    		 68 N/A N/A N/A synthetic
    construct
    32630    		 41422825 Assembly1
    rna:A:1~68 6~7,9~10,21~22,41~42,45
    15009 9hrg:C
    (2.05Å)
    		 68 N/A N/A N/A synthetic
    construct
    32630    		 41422825 Assembly2
    rna:D:1~68 16,25~26,35,50
    15010 9hrg:D
    (2.05Å)
    		 68 N/A N/A N/A synthetic
    construct
    32630    		 41422825 Assembly2
    rna:C:1~68 16~17,25~26,35,50
    15011 9huq:a
    (2.49Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    562    		 N/A Assembly1
    rna:b:1~2901 78~81,88~89,96~97,99~100
    15012 9huq:b
    (2.49Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000311517 RF02540
    RF02541
    RF02543
    RF00002    		 Escherichia
    coli
    562    		 N/A Assembly1
    rna:a:2~119 861~863,915,917~919,958~959
    rna:v:1~77 1906,1908~1909,1922~1925,2064,
    2251~2253,2450~2451,2602
    15013 9huq:v
    (2.49Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 N/A Assembly1
    rna:b:1~2901 11~15,25~26,75~77
    15014 9hus:a
    (2.4Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    562    		 N/A Assembly1
    rna:b:1~2901 78~81,88~89,96~97,99~100
    15015 9hus:b
    (2.4Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000311517 RF02540
    RF02541
    RF02543
    RF00002    		 Escherichia
    coli
    562    		 N/A Assembly1
    rna:a:2~119 861~863,915,917~919,958~959
    rna:v:1~77 1906,1908~1909,1922~1926,2064,
    2251~2253,2450~2451,2602
    15016 9hus:v
    (2.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 N/A Assembly1
    rna:b:1~2901 11~12,14,25~26,75~77
    15017 9hy6:A
    (2.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001DEEBE RF00005 Escherichia
    coli
    562    		 N/A Assembly1
    rna:X:12~20 35~37
    rna:b:1~2901 3,11~12,14,25~26,75~77
    15018 9hy6:a
    (2.6Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    562    		 N/A Assembly1
    rna:b:1~2901 78~81,88~89,96~97,99~100
    15019 9hy6:b
    (2.6Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000311517 RF02540
    RF02541
    RF02543
    RF00002    		 Escherichia
    coli
    562    		 N/A Assembly1
    rna:v:2~77 1942~1943,2482~2483,2507,2553~
    2555,2573,2583~2585
    rna:A:2~77 1908~1909,1922~1926,2063~2064,
    2251~2252,2255,2439,2450~2451,
    2602
    rna:a:2~119 861~863,915,917~919,958~959
    15020 9hy6:v
    (2.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001DEEBE RF00005 Escherichia
    coli
    562    		 N/A Assembly1
    rna:X:12~20 35~38
    rna:b:1~2901 53,64,73,75~77
    15021 9hym:A
    (2.2Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 N/A Assembly1
    rna:X:12~20 35~37
    rna:b:1~2901 11~14,25~26,75~77
    15022 9hym:a
    (2.2Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    562    		 N/A Assembly1
    rna:b:1~2901 78~81,88~89,96~97,99~100
    15023 9hym:b
    (2.2Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000311517 RF02540
    RF02541
    RF02543
    RF00002    		 Escherichia
    coli
    562    		 N/A Assembly1
    rna:a:2~119 861~863,915,917~919,958~959
    rna:v:1~77 1910,1942~1943,2482,2506~2507,
    2553~2555,2583~2585
    rna:A:2~77 1906~1909,1922~1925,2251~2252,
    2450~2451,2602
    15024 9hym:v
    (2.2Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 N/A Assembly1
    rna:X:12~20 35~38
    rna:b:1~2901 14,64,73,75~77
    15025 9i05:RA
    (2.2Å)
    		 35 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RG:1~93 5~16,18,22~23,25~31,33
    15026 9i05:RB
    (2.2Å)
    		 27 N/A URS0002F12C9D N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RC:1~33 2~5,17~19,23
    rna:RT:1~28 4~5
    15027 9i05:RC
    (2.2Å)
    		 33 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RB:1~27 2~9
    rna:RD:1~91 32~33
    rna:RT:1~28 7~8,10,21
    15028 9i05:RD
    (2.2Å)
    		 91 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RC:1~33 6~7,28~29
    rna:RF:1~29 41~43,45~47,51,84~88
    rna:RJ:1~59 56~57,79~80
    rna:RK:1~10 58~59,78~79
    rna:RL:1~178 2,9~11,15,26~27
    rna:RY:1~47 16~17
    15029 9i05:RE
    (2.2Å)
    		 44 N/A URS0002F12C87 N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RG:1~93 2,8,30
    15030 9i05:RF
    (2.2Å)
    		 29 N/A URS0002F12CA6 N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RD:1~91 11~12,14,20~25,27~29
    15031 9i05:RG
    (2.2Å)
    		 84 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RA:1~35 12,14~23,46~47,49,80~93
    rna:RE:1~44 24,53,70
    rna:RJ:1~59 83~85
    rna:RL:1~178 37~40
    rna:RS:1~94 85~86
    15032 9i05:RI
    (2.2Å)
    		 36 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RA:1~35 10~11
    rna:RJ:1~59 2,4,6~10
    rna:RX:1~284 1,4~5
    15033 9i05:RJ
    (2.2Å)
    		 59 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RD:1~91 57~59
    rna:RG:1~93 25~27
    rna:RI:1~38 1~6,8
    rna:RK:1~10 52~57
    rna:RL:1~178 14,31~35,38~40,43~54
    rna:RM:1~71 7,14~18
    rna:RS:1~94 10,22~31,33~34
    rna:RX:1~284 7~8,15,17,19,23~24
    15034 9i05:RK
    (2.2Å)
    		 10 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RD:1~91 1~2
    rna:RJ:1~59 1~5
    rna:RL:1~178 4~7
    15035 9i05:RL
    (2.2Å)
    		 178 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RD:1~91 18,27~31,131~133,136,161
    rna:RG:1~93 32~34,36,119,127~128
    rna:RJ:1~59 3~7,9~14,16~17,20~22,140~142,1
    52,167~169
    rna:RK:1~10 2~3,5~6
    rna:RM:1~71 151~152,160~161
    rna:RQ:1~68 143~150,169,171,173~174
    rna:RS:1~94 139~140,142~143
    rna:RW:1~91 65~67,72~73,80~82,88
    rna:RX:1~284 26~27,38,60~61,78,80,82~83,88~
    91,95,112~114,116,120,123~124,
    136,159
    rna:Ra:1~50 155,164~165
    rna:Rc:1~218 25~26,77~78,83,114~115,123,137
    ~138,156~157
    15036 9i05:RM
    (2.2Å)
    		 71 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RJ:1~59 2~3,28,38~39
    rna:RL:1~178 1~2,28~29
    rna:RP:1~11 36,62~64
    rna:RQ:1~68 29~30,45~51,53~57,59~61,66~68
    rna:RX:1~284 17,36~38
    rna:RZ:1~47 10,20~21
    rna:Rc:1~218 13,15~16
    15037 9i05:RN
    (2.2Å)
    		 26 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RO:1~26 1,3~4,6,14~16,21~24
    15038 9i05:RO
    (2.2Å)
    		 26 N/A URS0002F12C76 N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RN:1~26 5,7~8,12,15~16
    15039 9i05:RP
    (2.2Å)
    		 11 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RM:1~71 4,6~8,10
    15040 9i05:RQ
    (2.2Å)
    		 68 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RL:1~178 18,20,37~39,41,43~51
    rna:RM:1~71 1~8,10~14,41~44
    rna:RS:1~94 52~53,55~58,61
    15041 9i05:RS
    (2.2Å)
    		 94 N/A URS0002F12C9E N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RG:1~93 21~22
    rna:RJ:1~59 7,9,12,14~23
    rna:RL:1~178 11~12,14~15
    rna:RQ:1~68 1,3~6,10~11
    rna:RW:1~91 32~35,46~52,61,64~65,68~70,81~
    82,84~85
    rna:RX:1~284 23~33
    15042 9i05:RT
    (2.2Å)
    		 28 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RC:1~33 11,13,15~17
    rna:RL:1~178 8~9,12
    rna:RU:1~15 5~7
    rna:RV:1~35 6~7
    rna:RW:1~91 1~3
    15043 9i05:RU
    (2.2Å)
    		 15 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RT:1~28 2~3
    rna:RV:1~35 1~3,6~9,11~14
    15044 9i05:RV
    (2.2Å)
    		 35 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RL:1~178 4~5
    rna:RT:1~28 7~8
    rna:RU:1~15 5,7~13,17~18,20~22
    rna:RW:1~91 23,27~28
    15045 9i05:RW
    (2.2Å)
    		 91 N/A URS0002F12C81 N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RL:1~178 31,39~40,83,86~87
    rna:RS:1~94 13~14,19~22,26,33~37,42~43,47,
    51~55
    rna:RT:1~28 15~18
    rna:RV:1~35 8,12
    rna:RX:1~284 56~58,62~70,72~77,81~85
    rna:Rc:1~218 76,79
    rna:Rd:1~87 69~71
    15046 9i05:RX
    (2.2Å)
    		 277 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RI:1~38 209~212,226
    rna:RJ:1~59 208~210,221~223,227,245
    rna:RL:1~178 1,11~14,16~18,24~26,171,194,20
    5,258~262
    rna:RM:1~71 218~222,227~228
    rna:RS:1~94 194,201~208
    rna:RW:1~91 180~185,188~193,195~200
    rna:RY:1~47 267~276
    rna:Rc:1~218 16,19~20,23~24,129~131,142~146
    ,173,204~205,213~215,222~223,2
    35~247,253~257,259~267
    rna:Rd:1~87 189~190
    rna:Rf:1~29 188~189
    15047 9i05:RY
    (2.2Å)
    		 47 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RD:1~91 10~11
    rna:RX:1~284 2~11
    rna:RZ:1~47 15~16,22,26,28~32
    rna:Ra:1~50 27~28
    rna:Rc:1~218 11~13,18,25~26
    15048 9i05:RZ
    (2.2Å)
    		 45 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RM:1~71 8~9
    rna:RY:1~47 7~8,10~12,15~16,19
    rna:Ra:1~50 23~24,27~29
    rna:Rb:1~28 17~20,22,27
    15049 9i05:Ra
    (2.2Å)
    		 50 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RZ:1~47 4~6,8,40
    rna:Rb:1~28 7~9,23,27,38~42
    rna:Rc:1~218 21~23
    15050 9i05:Rb
    (2.2Å)
    		 28 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RZ:1~47 8,12~13
    rna:Ra:1~50 4~8,13,16
    rna:Rc:1~218 15~16,18~20
    15051 9i05:Rc
    (2.2Å)
    		 201 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RL:1~178 8~9,20,22~25,170~171,191,193,1
    95
    rna:RM:1~71 37,39
    rna:RW:1~91 131~132,135,164
    rna:RX:1~284 15~18,21~27,35,131~134,141~143
    ,154,159~160,168~174,178~180,1
    85,187~191,193~205
    rna:RY:1~47 6~8,14~16,184
    rna:RZ:1~47 5,7
    rna:Ra:1~50 8~9
    rna:Rb:1~28 1~5,9
    rna:Rd:1~87 101~103,112~114,122~126,146~14
    7
    rna:Rg:1~14 103~104,107,119~120
    rna:Rh:1~49 206,210
    rna:Ri:1~44 209~210
    15052 9i05:Rd
    (2.2Å)
    		 80 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RW:1~91 77~78
    rna:RX:1~284 78~79
    rna:Rc:1~218 14~16,36~39,48~50,53~55
    rna:Rf:1~29 1,7~8,10~13,67~71,73~81
    rna:Rg:1~14 19~20
    rna:Rh:1~49 2~7
    rna:Ri:1~44 1,87
    15053 9i05:Rf
    (2.2Å)
    		 29 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:RX:1~284 3~5
    rna:Rd:1~87 1~12,15,19~20,23,29
    15054 9i05:Rg
    (2.2Å)
    		 14 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:Rc:1~218 6~7
    15055 9i05:Rh
    (2.2Å)
    		 49 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:Rd:1~87 24~29,32
    rna:Ri:1~44 30~38,46~48
    15056 9i05:Ri
    (2.2Å)
    		 44 N/A N/A N/A Toxoplasma
    gondii
    5811    		 39827269 Assembly1
    rna:Rc:1~218 31~32
    rna:Rd:1~87 23,36
    rna:Rh:1~49 18~19,27~34
    15057 9i14:A4
    (3.34Å)
    		 11 N/A N/A N/A Homo
    sapiens
    9606    		 N/A Assembly1
    rna:B4:1~75 46~48
    rna:D4:4~69 49~52
    rna:S2:1~1869 43,46~50
    15058 9i14:B4
    (3.34Å)
    		 75 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 N/A
    M352_0.6

    1235

    s46

    1075    		 Assembly1
    rna:A4:42~52 33~36
    rna:L5:1~5069 3,69~70,74~75
    rna:S2:1~1869 29~31,33,37~40
    15059 9i14:D4
    (3.34Å)
    		 63 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Homo
    sapiens
    9606    		 N/A
    1212

    1373    		 Assembly1
    rna:A4:42~52 34~37
    rna:L5:1~5069 37~38,56
    rna:S2:1~1869 34~37
    15060 9i14:L5
    (3.34Å)
    		 3465 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02540
    RF02543
    RF02541    		 Homo
    sapiens
    9606    		 N/A
    M054_0.6

    1306

    706

    1303

    762

    42

    1148

    1149

    764

    21

    1029

    1072

    1073

    s77

    819

    1373

    938

    546

    s52

    s51

    s50

    M272_0.6

    936

    s59

    995

    994

    595

    1314

    991

    1312

    1311

    673

    123

    124

    125

    1068

    s72

    1060

    s100

    s102

    52

    533

    M227_0.6

    1384

    375

    926

    822

    1128

    988

    1321

    708

    704

    705

    1328

    707

    1124

    987

    1126

    703

    1237

    83

    1181

    796

    836

    837

    790

    838

    1334

    s70

    1017

    1393

    610

    1012

    1013

    1236

    M290_0.6

    1231

    1232

    1233

    1335

    1238

    M109_0.6

    1336

    1331

    1239

    1333

    589

    M273_0.6

    s99

    1389

    902

    821

    900

    901

    906

    905

    33

    s48

    s17

    853

    M044_0.6

    1245

    s62

    s96

    1227

    883

    M035_0.6

    1223

    604

    1347

    60

    s81

    M349_0.6

    1083

    100

    s61

    977

    976

    974

    852

    970

    M154_0.6

    884

    s55

    979

    M153_0.6

    183

    185

    1375

    503

    1035

    1212

    M102_0.6

    1216

    1042

    986

    467

    M148_0.6

    1354

    M103_0.6

    169

    91

    167

    M070_0.6

    930

    M020_0.6

    M050_0.6

    1187

    1182

    815

    1037

    727

    M347_0.6

    722

    935

    M086_0.6

    1164

    1165

    1166

    606

    886

    156

    748

    749

    608

    M061_0.6

    958

    1055

    878

    1059

    953

    952

    872

    954

    957

    1352

    1215

    M104_0.6

    1173

    770

    1183

    1271

    1272

    1273

    779

    778

    1178

    M151_0.6

    78

    1285

    M083_0.6

    1288

    354

    688

    1360

    800

    1368

    804    		 Assembly1
    rna:B4:1~75 3715,3739~3740,4341~4342,4370~
    4371
    rna:D4:4~69 3760,4255
    rna:L7:1~119 1736~1738,1741,1792,1794~1796,
    1894,1909,1936,1942
    rna:L8:1~156 2~22,58,146,339,341~348,350~35
    3,356~357,360,362,379~380,409,
    415~430,1304~1305,1333~1334,13
    71,2308~2309,2312~2313,2333~23
    34,2355~2356,2444,2472,2508~25
    09,2778~2779,3890,4162
    rna:S2:1~1869 1563~1565,3710,3759~3763,3766~
    3767,3794~3796,3806~3808
    15061 9i14:L7
    (3.34Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Homo
    sapiens
    9606    		 N/A
    931

    1290

    s51

    879    		 Assembly1
    rna:L5:1~5069 77~80,84,88,98,100~101,103~104
    15062 9i14:L8
    (3.34Å)
    		 147 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00002 Homo
    sapiens
    9606    		 N/A
    1227

    592

    993

    1215

    1271

    s37

    1238

    1178

    M085_0.6

    1389

    1360

    1352

    589

    706    		 Assembly1
    rna:L5:1~5069 3~22,24~37,40~41,53~54,103,108
    ,112~113,115,136,138~151,153~1
    56
    15063 9i14:S2
    (3.34Å)
    		 1577 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF01960
    RF02542
    RF01959
    RF00177    		 Homo
    sapiens
    9606    		 N/A
    1323

    988

    M074_0.6

    1327

    1213

    1263

    749

    707

    1267

    43

    1167

    325

    692

    974

    M037_0.6

    1311

    878

    970

    1274

    838

    1075

    1195

    346

    870

    819

    639

    546

    509

    930

    1393

    1392

    335

    1390

    M296_0.6

    1236

    758

    756

    M141_0.6

    1335

    779

    M109_0.6

    M148_0.6

    1238

    M273_0.6

    1355

    M065_0.6

    s99

    872

    M070_0.6

    902

    786

    813

    M147_0.6

    M050_0.6

    1188

    1187

    1079

    788

    1124

    s102

    815

    1333

    924

    954

    47

    1386

    M016_0.6

    1380

    926

    804    		 Assembly1
    rna:A4:42~52 961,1207,1701~1702,1824~1825,1
    830
    rna:B4:1~75 1058,1248,1524,1639~1641,1701
    rna:D4:4~69 626,1331,1825
    rna:L5:1~5069 677,970,1028~1030,1708~1710,17
    19~1721,1815~1816,1825~1827,18
    49
    15064 9i1w:1
    (2.38Å)
    		 3191 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02540
    RF02541
    RF02543    		 Thermochaetoides
    thermophila
    DSM
    1495
    759272    		 41432034 Assembly1
    rna:3:1~119 978~980,983,1037~1039,1154,118
    0,1186
    rna:4:1~156 3~24,60,322~330,332~335,338~33
    9,342,344,361~362,397~401,403~
    412,644~645,679,1377~1378,1382
    ,1402~1403,1513,1565,1811,2544
    ,2953~2954
    rna:9:74~76 2752~2753
    15065 9i1w:3
    (2.38Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Thermochaetoides
    thermophila
    DSM
    1495
    759272    		 41432034 Assembly1
    rna:1:3~3337 78~81,85,89,99,102,104
    15066 9i1w:4
    (2.38Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00002 Thermochaetoides
    thermophila
    DSM
    1495
    759272    		 41432034 Assembly1
    rna:1:3~3337 1,4~13,15~22,24~33,35~37,40,54
    ,104,114,137,140~152,154~156
    15067 9i2d:CM
    (2.19Å)
    		 12 N/A N/A N/A Homo
    sapiens
    9606    		 41577716
    31588918    		 Assembly1
    rna:CP:1~75 320~322
    rna:S2:1~1869 317,319~322,324,326~327
    15068 9i2d:CP
    (2.19Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000416117 RF00005 Homo
    sapiens
    9606    		 41577716
    31588918
    938

    886

    979

    660    		 Assembly1
    rna:CM:316~327 33~36
    rna:L5:1~5069 12,72~75
    rna:S2:1~1869 29~31,33,37~40
    15069 9i2d:L5
    (2.19Å)
    		 3648 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02540
    RF02541
    RF02543    		 Homo
    sapiens
    9606    		 41577716
    31588918
    M054_0.6

    1306

    769

    706

    1303

    762

    42

    1148

    1149

    764

    870

    167

    21

    1079

    930

    1029

    1072

    1073

    s77

    1071

    819

    1373

    938

    546

    s52

    s51

    s50

    931

    813

    936

    s59

    995

    994

    595

    1314

    991

    1312

    1311

    1150

    673

    123

    124

    125

    1068

    s72

    1060

    s100

    s102

    52

    533

    M227_0.6

    1384

    375

    926

    822

    1128

    988

    1321

    708

    704

    705

    1328

    707

    1124

    987

    1126

    703

    M077_0.6

    1237

    83

    1181

    797

    796

    795

    836

    837

    791

    790

    838

    1334

    s70

    1016

    1017

    1393

    610

    1012

    1013

    1236

    M290_0.6

    763

    1231

    1232

    1233

    1335

    s17

    M109_0.6

    1336

    1331

    1239

    1333

    589

    776

    M273_0.6

    s99

    1389

    902

    821

    900

    901

    906

    905

    33

    s48

    853

    924

    M044_0.6

    1245

    s62

    s96

    1227

    883

    M035_0.6

    1223

    M156_0.6

    604

    M320_0.6

    1347

    60

    s81

    M349_0.6

    1083

    175

    1026

    100

    s61

    977

    976

    974

    852

    970

    M154_0.6

    884

    s55

    979

    M153_0.6

    183

    1238

    185

    1375

    1036

    503

    1034

    1035

    1212

    M102_0.6

    1211

    1216

    1042

    986

    467

    M148_0.6

    1354

    M103_0.6

    169

    91

    1127

    162

    M070_0.6

    M272_0.6

    M020_0.6

    M050_0.6

    1187

    1182

    815

    1037

    727

    M347_0.6

    722

    935

    M086_0.6

    1164

    1165

    1166

    606

    886

    156

    748

    749

    608

    M061_0.6

    958

    1055

    878

    879

    1059

    953

    952

    872

    954

    957

    1107

    1352

    774

    1215

    M104_0.6

    1173

    770

    773

    1183

    1271

    1272

    1273

    779

    778

    1178

    78

    1285

    M083_0.6

    1041

    1040

    1043

    1045

    1044

    1288

    354

    688

    1360

    684

    800

    1368    		 Assembly1
    rna:CP:1~75 3770,3910,4196~4198,4396~4397,
    4547~4548
    rna:L7:1~120 1736~1738,1741,1792~1796,1894,
    1909,1936,1942
    rna:L8:1~156 2~22,58,146,339,342~348,350~35
    3,356~357,360,362,379~380,415~
    430,1304~1305,1333~1334,1371,2
    308~2309,2312~2313,2332~2334,2
    355,2443~2445,2488,2493,2508~2
    509,2545,2778~2780,3890
    rna:S2:1~1869 1563~1564,2867,2884~2885,3628~
    3629,3695,3699~3700,3711~3712,
    3759~3763,3766~3767,3769,3794~
    3796,3806~3808
    15070 9i2d:L7
    (2.19Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Homo
    sapiens
    9606    		 41577716
    31588918
    931

    1290

    s51

    879    		 Assembly1
    rna:L5:1~5069 77~80,84,88,98,100~101,103~104
    15071 9i2d:L8
    (2.19Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00002
    RF02540    		 Homo
    sapiens
    9606    		 41577716
    31588918
    1227

    592

    s24

    993

    1215

    1352

    s37

    1238

    1178

    M085_0.6

    1389

    1360

    589

    375

    M106_0.6    		 Assembly1
    rna:L5:1~5069 3~13,15~22,24~37,40~41,53~54,1
    03,108,110~113,115,124,126~127
    ,136,138~149,151~155
    15072 9i2d:S2
    (2.19Å)
    		 1713 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF01960
    RF02542
    RF01959
    RF00177    		 Homo
    sapiens
    9606    		 41577716
    31588918
    1303

    1263

    872

    1149

    1267

    764

    43

    957

    692

    1079

    1075

    1072

    1073

    819

    346

    546

    1378

    930

    936

    935

    M296_0.6

    1314

    M141_0.6

    1068

    s72

    M147_0.6

    1060

    s102

    1384

    1386

    M016_0.6

    821

    926

    822

    1128

    1323

    988

    595

    1327

    707

    1124

    796

    836

    762

    790

    838

    1017

    1393

    1392

    1390

    1236

    1335

    1334

    M109_0.6

    1238

    M273_0.6

    s96

    s99

    1311

    902

    900

    905

    33

    s48

    788

    445

    924

    s62

    s61

    M074_0.6

    335

    60

    1167

    977

    976

    974

    852

    970

    509

    1037

    1035

    1213

    756

    986

    M148_0.6

    786

    1355

    M065_0.6

    93

    167

    M070_0.6

    813

    M050_0.6

    1188

    1333

    1187

    815

    727

    722

    883

    604

    606

    884

    749

    779

    608

    M037_0.6

    1055

    878

    1059

    952

    1195

    954

    870

    1380

    325

    758

    770

    610

    1274

    1042

    M127_0.6

    s24

    639

    804    		 Assembly1
    rna:CM:316~327 626,961,1207,1331,1701~1702,18
    25,1830,1837
    rna:CP:1~75 1058,1248,1524,1639~1641,1701
    rna:L5:1~5069 368,677~678,970,1028~1029,1051
    ~1052,1059,1180,1708~1710,1719
    ~1721,1731~1732,1815~1816,1825
    ~1828,1849
    15073 9i2e:CC
    (2.95Å)
    		 85 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00021ED8EE RF00005
    RF01852    		 Homo
    sapiens
    9606    		 41577716
    31588918
    1237

    21    		 Assembly1
    rna:L5:1~5069 3~4,18~19,65,79~80,84~85
    rna:S2:1~1869 30~31,34,40~42,50
    15074 9i2e:L5
    (2.95Å)
    		 3772 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02540
    RF02541
    RF02543    		 Homo
    sapiens
    9606    		 41577716
    31588918
    M054_0.6

    1306

    769

    706

    1303

    762

    763

    1148

    1149

    764

    870

    167

    21

    1079

    930

    1029

    1075

    1072

    1073

    M104_0.6

    1071

    819

    1373

    938

    546

    s52

    s51

    s50

    931

    813

    936

    s59

    995

    994

    595

    1314

    991

    1312

    1311

    1028

    1150

    673

    123

    124

    125

    1068

    1017

    1060

    s100

    s102

    52

    533

    M227_0.6

    1384

    375

    926

    822

    1128

    988

    1321

    708

    704

    705

    1328

    707

    1124

    987

    1126

    703

    M077_0.6

    1237

    83

    1181

    797

    796

    795

    836

    837

    791

    790

    838

    1334

    s70

    1016

    s72

    1393

    610

    1012

    1013

    1236

    M290_0.6

    1231

    1232

    1233

    1335

    s17

    M109_0.6

    1336

    1331

    1239

    1333

    589

    M273_0.6

    s99

    1389

    902

    821

    900

    901

    906

    905

    33

    s48

    853

    M102_0.6

    924

    M044_0.6

    1245

    s62

    s96

    1227

    883

    M035_0.6

    1223

    M156_0.6

    604

    M320_0.6

    1347

    60

    s81

    M349_0.6

    1083

    175

    100

    42

    s61

    977

    976

    974

    852

    970

    M154_0.6

    884

    s55

    979

    M153_0.6

    183

    1238

    185

    1375

    1036

    503

    1034

    1035

    1212

    1043

    1211

    1216

    1042

    986

    467

    M148_0.6

    1354

    M103_0.6

    169

    91

    1127

    162

    M070_0.6

    1026

    M020_0.6

    M050_0.6

    1187

    1182

    815

    1037

    1107

    M347_0.6

    722

    935

    M086_0.6

    1164

    1165

    1166

    606

    886

    156

    748

    749

    608

    727

    s77

    M061_0.6

    958

    1055

    878

    879

    1059

    953

    952

    872

    954

    957

    M272_0.6

    1352

    774

    1215

    776

    1173

    770

    773

    1183

    1271

    1272

    1273

    779

    778

    1178

    M151_0.6

    78

    1285

    M083_0.6

    1041

    1040

    1045

    1044

    1288

    354

    688

    1360

    684

    800

    1368

    804    		 Assembly1
    rna:CC:1~85 3714~3715,3739~3740,3958,4341~
    4342,4370~4371
    rna:L7:1~120 1736~1739,1741,1792~1796,1894,
    1909,1936,1942
    rna:L8:1~156 2~22,58,146,193,339,342~348,35
    0~353,356~357,360,362,379~380,
    415~430,1304~1305,1333~1334,13
    71,2308~2309,2313,2332~2334,23
    55,2444~2445,2472,2488,2493~24
    94,2508,2544,2778~2780,3890,41
    62
    rna:S2:1~1869 1563~1565,2884,3628~3629,3759~
    3760,3762~3763,3766~3767,3794~
    3796,3806~3808
    15075 9i2e:L7
    (2.95Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Homo
    sapiens
    9606    		 41577716
    31588918
    931

    1290

    s51

    879    		 Assembly1
    rna:L5:1~5069 77~80,84,88,98,100~104
    15076 9i2e:L8
    (2.95Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00002
    RF02540    		 Homo
    sapiens
    9606    		 41577716
    31588918
    1227

    592

    s24

    993

    1215

    1352

    s37

    1238

    1178

    M085_0.6

    1389

    1360

    589

    375

    M106_0.6    		 Assembly1
    rna:L5:1~5069 3~13,15~22,24~37,40~41,53~54,6
    8,103,108,110~113,115,124,126~
    127,136~156
    15077 9i2e:S2
    (2.95Å)
    		 1740 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF01960
    RF02542
    RF01959
    RF00177    		 Homo
    sapiens
    9606    		 41577716
    31588918
    1303

    1263

    872

    1149

    1267

    764

    43

    M074_0.6

    957

    692

    1079

    1145

    1072

    1073

    819

    346

    546

    1378

    930

    936

    935

    M296_0.6

    1314

    M141_0.6

    1068

    s72

    M147_0.6

    1060

    s102

    1384

    1386

    M016_0.6

    821

    926

    822

    1128

    1323

    988

    595

    1327

    707

    986

    796

    836

    762

    790

    838

    1124

    1017

    1393

    1392

    1390

    1236

    1335

    1334

    M109_0.6

    1238

    M273_0.6

    s14

    s96

    s99

    1311

    105

    902

    900

    905

    s48

    788

    445

    924

    s62

    s61

    1075

    335

    60

    1167

    977

    976

    974

    852

    970

    1333

    509

    1037

    1035

    1213

    756

    639

    M148_0.6

    786

    1355

    M065_0.6

    93

    167

    M070_0.6

    813

    M050_0.6

    1188

    1022

    1187

    1029

    815

    727

    722

    883

    604

    606

    884

    749

    779

    608

    M037_0.6

    1055

    878

    1059

    952

    1195

    954

    870

    1380

    325

    758

    770

    610

    1274

    1042

    M127_0.6

    s24

    804    		 Assembly1
    rna:CC:1~85 1248,1524~1525,1633~1634,1639~
    1641
    rna:L5:1~5069 677,1028~1030,1708~1710,1719~1
    721,1731,1815~1816,1826~1828,1
    849
    15078 9i3l:Z
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... N/A RF00005 Escherichia
    coli
    562    		 N/A Assembly1
    rna:b:1~2905 12~13,26,75~77
    15079 9i3l:a
    (3.1Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Escherichia
    coli
    562    		 N/A Assembly1
    rna:b:1~2905 41,78~81,88,96~97,99~100
    15080 9i3l:b
    (3.1Å)
    		 2890 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02540
    RF02541
    RF02543
    RF00002    		 Escherichia
    coli
    562    		 N/A Assembly1
    rna:a:1~119 863~865,917,919~921,960~961,23
    44
    rna:Z:2~77 1911~1913,1926~1927,2068,2255~
    2257,2454~2455,2606
    15081 9i5t:A
    (2.6Å)
    		 2529 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Porphyromonas
    gingivalis
    837    		 40444637 Assembly1
    rna:B:3~108 895~897,949,951~952
    15082 9i5t:B
    (2.6Å)
    		 102 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Porphyromonas
    gingivalis
    837    		 40444637 Assembly1
    rna:A:1~2882 76~78,89~90,92~93
    15083 9i5v:A
    (2.7Å)
    		 2363 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Porphyromonas
    gingivalis
    837    		 40444637 Assembly1
    rna:B:2~109 895~897,949,951~952
    rna:a:7~1522 1739~1740,1855,1903,1957~1958,
    1969~1970
    15084 9i5v:B
    (2.7Å)
    		 104 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Porphyromonas
    gingivalis
    837    		 40444637 Assembly1
    rna:A:1~2874 76~78,90,92~93
    15085 9i5v:a
    (2.7Å)
    		 1357 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177 Porphyromonas
    gingivalis
    837    		 40444637 Assembly1
    rna:A:1~2874 702,1416,1427,1472~1473
    15086 9i5x:A
    (3.0Å)
    		 2344 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02541 Porphyromonas
    gingivalis
    837    		 40444637 Assembly1
    rna:B:3~109 895~898,949,951~952
    rna:a:7~1522 1739,1841,1855,1903,1957~1960,
    1969~1970
    15087 9i5x:B
    (3.0Å)
    		 100 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00001 Porphyromonas
    gingivalis
    837    		 40444637 Assembly1
    rna:A:1~2874 76~78,90,92~93
    15088 9i5x:a
    (3.0Å)
    		 1326 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00177 Porphyromonas
    gingivalis
    837    		 40444637 Assembly1
    rna:A:1~2874 702,898,1416~1418,1427,1472~14
    73
    15089 9i78:L1
    (2.2Å)
    		 3146 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF02543 Thermochaetoides
    thermophila
    DSM
    1495
    759272    		 41162385 Assembly1
    rna:L2:1~156 3~24,60,139,322~330,332~335,33
    8~339,342,344,361~362,391,397~
    412,644~645,679,1377~1378,1382
    ,1402~1403,1424,1513,1541,1564
    ~1565,1598,1810~1812,2349~2350
    ,2544,2953~2954
    rna:L3:1~119 978~981,983,1035~1039,1139,115
    4,1180,1186
    15090 9i78:L2
    (2.2Å)
    		 149 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 N/A RF00002 Thermochaetoides
    thermophila
    DSM
    1495
    759272    		 41162385 Assembly1
    rna:L1:3~3337 1~22,24~33,35~37,40~41,53~54,1
    04,109,113~115,126,136~152,154
    ~156
    15091 9i78:L3
    (2.2Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00006BED5F RF00001 Thermochaetoides
    thermophila
    DSM
    1495
    759272    		 41162385 Assembly1
    rna:L1:3~3337 78~81,85,89,99,101~105
    15092 9i8b:A

    		 20 N/A URS000305495C N/A Rattus
    norvegicus
    10116    		 40568935 Assembly1
    rna:B:21~40 1~20
    15093 9i8b:B

    		 20 N/A URS0003054949 N/A Rattus
    norvegicus
    10116    		 40568935 Assembly1
    rna:A:1~20 21~40
    15094 9i9w:AAA
    (1.501Å)
    		 14 N/A N/A N/A Homo
    sapiens
    9606    		 40966516 Assembly1
    rna:BBB:1~14 2~6,10~14
    15095 9i9w:BBB
    (1.501Å)
    		 14 N/A N/A N/A Homo
    sapiens
    9606    		 40966516 Assembly1
    rna:AAA:1~14 2~6,10~14
    15096 9if0:AAA
    (2.55Å)
    		 15 N/A N/A N/A Homo
    sapiens
    9606    		 40966516 Assembly1
    rna:BBB:1~15 1~6,10~15
    15097 9if0:BBB
    (2.55Å)
    		 15 N/A N/A N/A Homo
    sapiens
    9606    		 40966516 Assembly1
    rna:AAA:1~15 1~6,10~15
    15098 9if1:AAA
    (2.79Å)
    		 15 N/A N/A N/A Homo
    sapiens
    9606    		 40966516 Assembly1
    rna:BBB:1~15 1~15
    15099 9if1:BBB
    (2.79Å)
    		 15 N/A N/A N/A Homo
    sapiens
    9606    		 40966516 Assembly1
    rna:AAA:1~15 1~8,10~15
    15100 9iiy:B
    (3.0Å)
    		 22 N/A URS0002F1044F N/A Homo
    sapiens
    9606    		 39814893 Assembly1
    rna:C:1~21 3~22
    << < 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.