SEQ2FUN

FURNA
Download all results in tab-seperated text for 16611 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
  • Hover over PDB to view the title of the structure.
  • Hover over Rfam to view names of Rfam families.
  • Hover over PubMed to view title of the PubMed publications.
  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1501 3ks8:F
    (2.401Å)
    		 18 N/A URS000080E132 N/A synthetic
    construct
    32630    		 20018665 Assembly1
    rna:E:1~18 1~18
    1502 3l3c:E
    (2.85Å)
    		 13 N/A URS000080E2F9 N/A Bacillus
    anthracis
    1392    		 19228039 Assembly1
    rna:P:12~141 0~5,7~11
    1503 3l3c:F
    (2.85Å)
    		 13 N/A URS000080E2F9 N/A Bacillus
    anthracis
    1392    		 19228039 Assembly2
    rna:Q:1~141 0~5,7~11
    1504 3l3c:G
    (2.85Å)
    		 13 N/A URS000080E2F9 N/A Bacillus
    anthracis
    1392    		 19228039 Assembly3
    rna:R:1~141 0~5,7~11
    1505 3l3c:H
    (2.85Å)
    		 13 N/A URS000080E2F9 N/A Bacillus
    anthracis
    1392    		 19228039 Assembly4
    rna:S:1~141 0~5,7~11
    1506 3l3c:P
    (2.85Å)
    		 141 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080E011 RF00234 Bacillus
    anthracis
    1392    		 19228039 Assembly1
    rna:E:-1~11 12,23~30,32~33,44,50,52~57,111
    ~112
    1507 3l3c:Q
    (2.85Å)
    		 141 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080E011 RF00234 Bacillus
    anthracis
    1392    		 19228039 Assembly2
    rna:F:-1~11 1,23~28,30,32~33,44,50,52~59,1
    11~112
    1508 3l3c:R
    (2.85Å)
    		 141 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080E011 RF00234 Bacillus
    anthracis
    1392    		 19228039 Assembly3
    rna:G:-1~11 1,23~30,32~33,50,52~58,111~112
    1509 3l3c:S
    (2.85Å)
    		 141 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080E011 RF00234 Bacillus
    anthracis
    1392    		 19228039 Assembly4
    rna:H:-1~11 1,23~30,32~33,50,52~58,111~112
    1510 3loa:A
    (2.299Å)
    		 21 N/A URS000080E2B2 N/A synthetic
    construct
    32630    		 20215440 Assembly1
    rna:B:1484~1506 1397~1417
    1511 3loa:B
    (2.299Å)
    		 23 N/A URS000080DD50 N/A synthetic
    construct
    32630    		 20215440 Assembly1
    rna:A:1397~1417 1484~1491,1493~1498,1500~1505
    1512 3lrn:C
    (2.6Å)
    		 14 N/A URS000080DFA5 N/A synthetic
    construct
    32630    		 20637642 Assembly1
    rna:D:0~13 0~13
    1513 3lrn:D
    (2.6Å)
    		 14 N/A URS000080DFA5 N/A synthetic
    construct
    32630    		 20637642 Assembly1
    rna:C:0~13 0~13
    1514 3lrr:C
    (2.15Å)
    		 12 N/A URS000080DF8A N/A synthetic
    construct
    32630    		 20637642 Assembly1
    rna:D:1~12 1~12
    1515 3lrr:D
    (2.15Å)
    		 12 N/A URS000080DF8A N/A synthetic
    construct
    32630    		 20637642 Assembly1
    rna:C:1~12 1~12
    1516 3lwo:D
    (2.855Å)
    		 58 GO:0006396 (P) RNA processing URS000080DEB8 RF02796 synthetic
    construct
    32630    		 20615421 Assembly1
    rna:E:5~17 10~15,40~46
    1517 3lwo:E
    (2.855Å)
    		 13 N/A URS000080DF79 N/A synthetic
    construct
    32630    		 20615421 Assembly1
    rna:D:1~58 5~9,12~17
    1518 3lwp:D
    (2.5Å)
    		 58 GO:0006396 (P) RNA processing URS000080DEB8 RF02796 synthetic
    construct
    32630    		 20615421 Assembly1
    rna:E:5~17 9~15,40~46
    1519 3lwp:E
    (2.5Å)
    		 13 N/A URS000080DF79 N/A synthetic
    construct
    32630    		 20615421 Assembly1
    rna:D:1~58 5~9,12~17
    1520 3lwq:D
    (2.678Å)
    		 58 GO:0006396 (P) RNA processing URS000080DEB8 RF02796 synthetic
    construct
    32630    		 20575532 Assembly1
    rna:E:5~17 9~15,41~46
    1521 3lwq:E
    (2.678Å)
    		 13 N/A URS000080DF79 N/A synthetic
    construct
    32630    		 20575532 Assembly1
    rna:D:1~58 5~9,13~17
    1522 3lwr:D
    (2.203Å)
    		 58 GO:0006396 (P) RNA processing URS000080DEB8 RF02796 synthetic
    construct
    32630    		 20575532 Assembly1
    rna:E:5~17 9~15,40~46
    1523 3lwr:E
    (2.203Å)
    		 12 N/A URS000080DF79 N/A synthetic
    construct
    32630    		 20575532 Assembly1
    rna:D:1~58 5~9,12~17
    1524 3lwv:D
    (2.499Å)
    		 58 GO:0006396 (P) RNA processing URS000080DEB8 RF02796 synthetic
    construct
    32630    		 20575532 Assembly1
    rna:E:5~17 9,11~15,40~46
    1525 3lwv:E
    (2.499Å)
    		 11 N/A URS000080DF79 N/A synthetic
    construct
    32630    		 20575532 Assembly1
    rna:D:1~58 5~9,12~17
    1526 3mei:A
    (1.968Å)
    		 23 N/A URS000080E209 N/A synthetic
    construct
    32630    		 21245530 Assembly1
    rna:B:1~23 1~8,10~13,15~23
    1527 3mei:B
    (1.968Å)
    		 23 N/A URS000080E209 N/A synthetic
    construct
    32630    		 21245530 Assembly1
    rna:A:1~23 1~13,15~23
    1528 3mij:A
    (2.6Å)
    		 12 N/A URS000080E0FC N/A Homo
    sapiens
    9606    		 21291211 Assembly1
    rna:A-2:1~12 2~5,9~11
    1529 3mj3:B
    (3.1Å)
    		 29 N/A URS000080DDC2 N/A synthetic
    construct
    32630    		 20410239 Assembly1
    rna:C:6203~6216 6185,6187~6194
    1530 3mj3:C
    (3.1Å)
    		 14 N/A URS000080E14D N/A synthetic
    construct
    32630    		 20410239 Assembly1
    rna:B:6174~6202 6209~6216
    1531 3mja:B
    (2.8Å)
    		 29 N/A URS000080DDC2 N/A synthetic
    construct
    32630    		 20410239 Assembly1
    rna:C:6203~6216 6185,6187~6194
    1532 3mja:C
    (2.8Å)
    		 14 N/A URS000080E14D N/A synthetic
    construct
    32630    		 20410239 Assembly1
    rna:B:6174~6202 6209~6216
    1533 3mjb:A
    (2.8Å)
    		 29 N/A URS000080DDC2 N/A synthetic
    construct
    32630    		 20410239 Assembly1
    rna:B:6203~6216 6184~6185,6187~6194
    1534 3mjb:B
    (2.8Å)
    		 14 N/A URS000080E14D N/A synthetic
    construct
    32630    		 20410239 Assembly1
    rna:A:6174~6202 6209~6216
    1535 3mqk:D
    (2.8Å)
    		 13 N/A URS000080E2B6 N/A synthetic
    construct
    32630    		 21149572 Assembly1
    rna:E:8~16 6~14
    1536 3ncu:C
    (2.55Å)
    		 12 N/A URS000080E329 N/A synthetic
    construct
    32630    		 20581823 Assembly1
    rna:D:1~12 1~12
    1537 3ncu:D
    (2.55Å)
    		 12 N/A URS000080E329 N/A synthetic
    construct
    32630    		 20581823 Assembly1
    rna:C:1~12 1~12
    1538 3nd3:A
    (1.37Å)
    		 16 N/A URS000080DEAD N/A synthetic
    construct
    32630    		 21878548 Assembly1
    rna:A-2:1~16 1~16
    1539 3nd4:A
    (1.524Å)
    		 16 N/A URS000080DDE8 N/A synthetic
    construct
    32630    		 21878548 Assembly1
    rna:A-2:1~16 1~16
    1540 3nj6:A
    (0.95Å)
    		 10 N/A URS000080DE08 N/A synthetic
    construct
    32630    		 20702420 Assembly1
    rna:A-2:1~10 1~10
    1541 3nj7:A
    (1.904Å)
    		 10 N/A URS000080DE08 N/A synthetic
    construct
    32630    		 20702420 Assembly1
    rna:B:1~10 1~10
    1542 3nj7:B
    (1.904Å)
    		 10 N/A URS000080DE08 N/A synthetic
    construct
    32630    		 20702420 Assembly1
    rna:A:1~10 1~10
    1543 3nj7:C
    (1.904Å)
    		 10 N/A URS000080DE08 N/A synthetic
    construct
    32630    		 20702420 Assembly2
    rna:D:1~10 1~10
    1544 3nj7:D
    (1.904Å)
    		 10 N/A URS000080DE08 N/A synthetic
    construct
    32630    		 20702420 Assembly2
    rna:C:1~10 1~10
    1545 3nj7:E
    (1.904Å)
    		 10 N/A URS000080DE08 N/A synthetic
    construct
    32630    		 20702420 Assembly3
    rna:F:1~10 1~10
    1546 3nj7:F
    (1.904Å)
    		 10 N/A URS000080DE08 N/A synthetic
    construct
    32630    		 20702420 Assembly3
    rna:E:1~10 1~10
    1547 3nkb:B
    (1.916Å)
    		 64 N/A URS000080DDAA N/A Homo
    sapiens
    9606    		 20677830
    93    		 Assembly1
    rna:A:2~9 31~38
    1548 3nmu:D
    (2.729Å)
    		 34 N/A URS000080E0DB N/A Pyrococcus
    furiosus
    2261    		 20864039 Assembly1
    rna:I:1~13 1~12
    1549 3nmu:E
    (2.729Å)
    		 34 N/A URS000080E0DB N/A Pyrococcus
    furiosus
    2261    		 20864039 Assembly2
    rna:K:2~13 1~11
    1550 3nmu:I
    (2.729Å)
    		 13 N/A URS000080E0A7 N/A synthetic
    construct
    32630    		 20864039 Assembly1
    rna:D:1~34 2~13
    1551 3nmu:K
    (2.729Å)
    		 12 N/A URS000080E0A7 N/A synthetic
    construct
    32630    		 20864039 Assembly2
    rna:E:1~34 3~13
    1552 3nvk:K
    (3.209Å)
    		 24 N/A URS000080E0DB N/A synthetic
    construct
    32630    		 20864039 Assembly1
    rna:G:2~4 1,3~4
    1553 3nvk:L
    (3.209Å)
    		 24 N/A URS000080E0DB N/A synthetic
    construct
    32630    		 20864039 Assembly1
    rna:S:2~4 1~4
    1554 3o3i:A
    (2.801Å)
    		 14 N/A URS000080E0AC N/A synthetic
    construct
    32630    		 21193640 Assembly1
    rna:A-2:1~14 1~12
    1555 3o6e:A
    (2.904Å)
    		 14 N/A URS000080E0AC N/A synthetic
    construct
    32630    		 21193640 Assembly1
    rna:A-2:1~14 1~12
    1556 3o7v:A
    (2.1Å)
    		 14 N/A URS000080E0AC N/A synthetic
    construct
    32630    		 21193640 Assembly1
    rna:A-2:1~14 1~12
    1557 3og8:C
    (2.4Å)
    		 14 N/A URS000080DFA5 N/A synthetic
    construct
    32630    		 20961956 Assembly1
    rna:D:1~14 1~14
    1558 3og8:D
    (2.4Å)
    		 14 N/A URS000080DFA5 N/A synthetic
    construct
    32630    		 20961956 Assembly1
    rna:C:1~14 1~14
    1559 3ok2:B
    (1.963Å)
    		 10 N/A URS000080E1AA N/A synthetic
    construct
    32630    		 22638588 Assembly1
    rna:A:1~11 1~10
    1560 3ok2:D
    (1.963Å)
    		 10 N/A URS000080E1AA N/A synthetic
    construct
    32630    		 22638588 Assembly2
    rna:C:1~11 1~10
    1561 3ok2:F
    (1.963Å)
    		 10 N/A URS000080E1AA N/A synthetic
    construct
    32630    		 22638588 Assembly3
    rna:E:1~11 1~10
    1562 3ok4:2
    (1.149Å)
    		 10 N/A URS000080E1AA N/A synthetic
    construct
    32630    		 N/A Assembly14
    rna:1:1~11 1~10
    1563 3ok4:4
    (1.149Å)
    		 10 N/A URS000080E1AA N/A synthetic
    construct
    32630    		 N/A Assembly15
    rna:3:1~11 1~10
    1564 3ok4:B
    (1.149Å)
    		 10 N/A URS000080E1AA N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:1~11 1~10
    1565 3ok4:D
    (1.149Å)
    		 10 N/A URS000080E1AA N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:C:1~11 1~10
    1566 3ok4:F
    (1.149Å)
    		 10 N/A URS000080E1AA N/A synthetic
    construct
    32630    		 N/A Assembly3
    rna:E:1~11 1~10
    1567 3ok4:H
    (1.149Å)
    		 10 N/A URS000080E1AA N/A synthetic
    construct
    32630    		 N/A Assembly4
    rna:G:1~11 1~10
    1568 3ok4:J
    (1.149Å)
    		 10 N/A URS000080E1AA N/A synthetic
    construct
    32630    		 N/A Assembly5
    rna:I:1~11 1~10
    1569 3ok4:L
    (1.149Å)
    		 10 N/A URS000080E1AA N/A synthetic
    construct
    32630    		 N/A Assembly6
    rna:K:1~11 1~10
    1570 3ok4:N
    (1.149Å)
    		 10 N/A URS000080E1AA N/A synthetic
    construct
    32630    		 N/A Assembly7
    rna:M:1~11 1~10
    1571 3ok4:P
    (1.149Å)
    		 10 N/A URS000080E1AA N/A synthetic
    construct
    32630    		 N/A Assembly8
    rna:O:1~11 1~10
    1572 3ok4:R
    (1.149Å)
    		 10 N/A URS000080E1AA N/A synthetic
    construct
    32630    		 N/A Assembly9
    rna:Q:1~11 1~4,6~10
    1573 3ok4:T
    (1.149Å)
    		 10 N/A URS000080E1AA N/A synthetic
    construct
    32630    		 N/A Assembly10
    rna:S:1~11 1~10
    1574 3ok4:V
    (1.149Å)
    		 10 N/A URS000080E1AA N/A synthetic
    construct
    32630    		 N/A Assembly11
    rna:U:1~11 1~10
    1575 3ok4:X
    (1.149Å)
    		 10 N/A URS000080E1AA N/A synthetic
    construct
    32630    		 N/A Assembly12
    rna:W:1~11 1~10
    1576 3ok4:Z
    (1.149Å)
    		 10 N/A URS000080E1AA N/A synthetic
    construct
    32630    		 N/A Assembly13
    rna:Y:1~11 1~10
    1577 3ol6:B
    (2.5Å)
    		 18 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly1
    rna:C:688~701 601~612
    rna:D:804~806 596~598
    1578 3ol6:C
    (2.5Å)
    		 14 N/A URS000080E1D2 N/A synthetic
    construct
    32630    		 21148772 Assembly1
    rna:B:596~613 690~701
    1579 3ol6:F
    (2.5Å)
    		 18 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly2
    rna:G:688~701 601~612
    rna:H:804~806 596~598
    1580 3ol6:G
    (2.5Å)
    		 14 N/A URS000080E1D2 N/A synthetic
    construct
    32630    		 21148772 Assembly2
    rna:F:596~613 690~701
    1581 3ol6:J
    (2.5Å)
    		 19 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly3
    rna:K:688~701 601~612
    rna:L:804~807 595~598
    1582 3ol6:K
    (2.5Å)
    		 14 N/A URS000080E1D2 N/A synthetic
    construct
    32630    		 21148772 Assembly3
    rna:J:595~613 690~701
    1583 3ol6:N
    (2.5Å)
    		 19 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly4
    rna:O:688~701 601~612
    rna:P:804~807 595~598
    1584 3ol6:O
    (2.5Å)
    		 14 N/A URS000080E1D2 N/A synthetic
    construct
    32630    		 21148772 Assembly4
    rna:N:595~613 690~701
    1585 3ol7:B
    (2.7Å)
    		 18 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly1
    rna:C:688~702 600~612
    rna:D:804~806 596~598
    1586 3ol7:C
    (2.7Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly1
    rna:B:596~613 690~702
    1587 3ol7:F
    (2.7Å)
    		 18 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly2
    rna:G:688~702 600~612
    rna:H:804~806 596~598
    1588 3ol7:G
    (2.7Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly2
    rna:F:596~613 690~702
    1589 3ol7:J
    (2.7Å)
    		 16 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly3
    rna:K:688~702 600~612
    rna:L:804~807 597~598
    1590 3ol7:K
    (2.7Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly3
    rna:J:597~612 690~702
    1591 3ol7:N
    (2.7Å)
    		 16 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly4
    rna:O:688~702 600~612
    rna:P:804~807 597~598
    1592 3ol7:O
    (2.7Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly4
    rna:N:597~612 690~702
    1593 3ol8:B
    (2.75Å)
    		 17 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly1
    rna:C:688~702 600~612
    rna:D:805~807 597~598
    1594 3ol8:C
    (2.75Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly1
    rna:B:597~613 690~702
    1595 3ol8:F
    (2.75Å)
    		 17 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly2
    rna:G:688~702 600~612
    rna:H:805~807 597~598
    1596 3ol8:G
    (2.75Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly2
    rna:F:597~613 690~702
    1597 3ol8:J
    (2.75Å)
    		 17 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly3
    rna:K:688~702 600~612
    rna:L:805~808 597~598
    1598 3ol8:K
    (2.75Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly3
    rna:J:597~613 690~702
    1599 3ol8:N
    (2.75Å)
    		 17 N/A URS000080E368 N/A synthetic
    construct
    32630    		 21148772 Assembly4
    rna:O:688~702 600~612
    rna:P:805~808 597~598
    1600 3ol8:O
    (2.75Å)
    		 15 N/A URS000080E1BB N/A synthetic
    construct
    32630    		 21148772 Assembly4
    rna:N:597~613 690~702
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.