SEQ2FUN

FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over PubMed to view title of the PubMed publications.
  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1801 4erd:C
    (2.589Å)
    		 22 N/A URS000080DDC3 N/A Tetrahymena
    thermophila
    5911    		 22705372 Assembly1
    rna:D:117~150 117~120,123~128,142~150
    1802 4erd:D
    (2.589Å)
    		 22 N/A URS000080DDC3 N/A Tetrahymena
    thermophila
    5911    		 22705372 Assembly1
    rna:C:117~150 117~120,123~128,142~150
    1803 4eya:a
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:b:1~12 3~12
    1804 4eya:b
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:a:1~12 3~12
    rna:c:1~12 1~3
    1805 4eya:c
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:d:1~12 3~7,9~12
    rna:b:1~12 1~3
    rna:n:1~12 4~5
    1806 4eya:d
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:c:1~12 3~7,9~12
    rna:e:1~12 1~3
    rna:m:1~12 2~3
    1807 4eya:e
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:f:1~12 3~12
    rna:d:1~12 1~2
    rna:p:1~12 2~3
    1808 4eya:f
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:e:1~12 3~12
    rna:g:1~12 1~3
    1809 4eya:g
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:h:1~12 3~12
    rna:f:1~12 1~3
    1810 4eya:h
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:g:1~12 3~10,12
    rna:i:1~12 1~3
    1811 4eya:i
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:j:1~12 3~12
    rna:h:1~12 1~3
    1812 4eya:j
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:i:1~12 3~12
    1813 4eya:k
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:d:1~12 8~9
    rna:l:1~12 3~12
    1814 4eya:l
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:k:1~12 3~12
    rna:m:1~12 1~3
    1815 4eya:m
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:n:1~12 3~12
    rna:l:1~12 1~3
    1816 4eya:n
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:c:1~12 10~11
    rna:m:1~12 3~12
    rna:o:1~12 1~3
    1817 4eya:o
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:p:1~12 3~7,9~12
    rna:n:1~12 1~3
    1818 4eya:p
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:g:1~12 2~3
    rna:o:1~12 3~7,9~12
    rna:q:1~12 1~3
    1819 4eya:q
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:h:1~12 2~3
    rna:r:1~12 3~12
    rna:p:1~12 1~2
    1820 4eya:r
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:q:1~12 3~12
    rna:s:1~12 1~3
    1821 4eya:s
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:t:1~12 3~12
    rna:r:1~12 1~3
    1822 4eya:t
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:s:1~12 3~10,12
    1823 4f8u:A
    (2.0Å)
    		 22 N/A URS000080E0C1 N/A synthetic
    construct
    32630    		 24900542 Assembly1
    rna:B:26~46 3~16,19~23
    1824 4f8u:B
    (2.0Å)
    		 21 N/A URS000080DF2F N/A synthetic
    construct
    32630    		 24900542 Assembly1
    rna:A:2~23 26~39,42~46
    1825 4f8v:A
    (2.8Å)
    		 21 N/A URS000080DF2F N/A synthetic
    construct
    32630    		 24900542 Assembly1
    rna:B:26~46 3~16,19~23
    1826 4f8v:B
    (2.8Å)
    		 21 N/A URS000080DF2F N/A synthetic
    construct
    32630    		 24900542 Assembly1
    rna:A:3~23 26~39,42~46
    1827 4far:A
    (2.86Å)
    		 390 GO:0000373 (P) Group II intron splicing URS000080E176 RF02001
    RF01998    		 Oceanobacillus
    iheyensis
    182710    		 23101623 Assembly1
    rna:B:-4~0 1,106,181~186,375
    1828 4faw:A
    (2.7Å)
    		 390 GO:0000373 (P) Group II intron splicing URS000080DF32 RF02001
    RF01998    		 Oceanobacillus
    iheyensis
    182710    		 23101623 Assembly1
    rna:B:1~5 181~186,375
    1829 4fsj:R
    (3.5Å)
    		 14 N/A URS000080E20F N/A Spodoptera
    frugiperda
    7108    		 N/A Assembly1
    rna:R-6:2~15 4~15
    1830 4ftb:R
    (2.7Å)
    		 15 N/A URS000080DF7A N/A Flock
    House
    virus
    12287    		 N/A Assembly1
    rna:R-6:1~15 4~15
    1831 4fte:R
    (3.5Å)
    		 15 N/A URS000080DF7A N/A Spodoptera
    frugiperda
    7108    		 N/A Assembly1
    rna:R-6:1~15 4~15
    1832 4fts:R
    (3.2Å)
    		 15 N/A URS000080DF7A N/A Spodoptera
    frugiperda
    7108    		 N/A Assembly1
    rna:R-6:1~15 4~6,8~15
    1833 4g6p:A
    (2.641Å)
    		 13 N/A URS000080E09E N/A synthetic
    construct
    32630    		 22989273 Assembly1
    rna:B:2~31 -4~-1,1~2,4~8
    rna:C:31~49 -2,1
    1834 4g6p:B
    (2.641Å)
    		 30 N/A URS000080E2DF N/A synthetic
    construct
    32630    		 22989273 Assembly1
    rna:A:-5~8 2~13,25~27
    rna:C:31~49 11~13,15~24,26~31
    1835 4g6p:C
    (2.641Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 22989273 Assembly1
    rna:A:-5~8 36~38,41~42
    rna:B:2~31 31~36,38,40~49
    1836 4g6r:A
    (2.832Å)
    		 13 N/A URS000080E09E N/A synthetic
    construct
    32630    		 22989273 Assembly1
    rna:B:2~13 2~13
    rna:C:15~31 6~7
    rna:D:31~49 3~6
    1837 4g6r:B
    (2.832Å)
    		 12 N/A URS000080E1BF N/A synthetic
    construct
    32630    		 22989273 Assembly1
    rna:A:1~13 2~13
    rna:C:15~31 10~12
    rna:D:31~49 11~13
    1838 4g6r:C
    (2.832Å)
    		 17 N/A URS000080DEF8 N/A synthetic
    construct
    32630    		 22989273 Assembly1
    rna:A:1~13 25~27
    rna:B:2~13 23~25
    rna:D:31~49 15~24,26~31
    1839 4g6r:D
    (2.832Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 22989273 Assembly1
    rna:A:1~13 36~38,41~42
    rna:B:2~13 42~43
    rna:C:15~31 31~36,38,40~49
    1840 4g6s:A
    (2.84Å)
    		 13 N/A URS000080E09E N/A synthetic
    construct
    32630    		 22989273 Assembly1
    rna:B:2~31 2~7,9~13
    rna:C:31~49 4,6
    1841 4g6s:B
    (2.84Å)
    		 30 N/A URS000080E2DF N/A synthetic
    construct
    32630    		 22989273 Assembly1
    rna:A:1~13 2~6,8~13,25~27
    rna:C:31~49 11~13,15~24,26~31
    1842 4g6s:C
    (2.84Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 22989273 Assembly1
    rna:A:1~13 36~38,41~42
    rna:B:2~31 31~36,38,40~49
    1843 4gha:I
    (2.5Å)
    		 12 N/A URS000080E156 N/A synthetic
    construct
    32630    		 23028316 Assembly1
    rna:J:1~12 1~12
    1844 4gha:J
    (2.5Å)
    		 12 N/A URS000080E156 N/A synthetic
    construct
    32630    		 23028316 Assembly1
    rna:I:1~12 1~12
    1845 4ghl:E
    (2.02Å)
    		 18 N/A URS000080DD2A N/A synthetic
    construct
    32630    		 23185024 Assembly1
    rna:F:1~18 1~18
    1846 4ghl:F
    (2.02Å)
    		 18 N/A URS000080DD2A N/A synthetic
    construct
    32630    		 23185024 Assembly1
    rna:E:1~18 1~18
    1847 4gkj:A
    (3.298Å)
    		 1513 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E11D RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23781103 Assembly1
    rna:W:1~3 513,1469~1470
    rna:X:31~39 513,1036,1470
    1848 4gkk:A
    (3.2Å)
    		 1513 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E11D RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23781103 Assembly1
    rna:W:1~4 513,1469~1470
    rna:X:34~39 513,1036,1470
    1849 4gl2:C
    (3.557Å)
    		 12 N/A URS000080E1D7 N/A synthetic
    construct
    32630    		 23273991 Assembly1
    rna:D:1~12 1~12
    1850 4gl2:D
    (3.557Å)
    		 12 N/A URS000080E086 N/A synthetic
    construct
    32630    		 23273991 Assembly1
    rna:C:1~12 1~12
    1851 4gl2:E
    (3.557Å)
    		 12 N/A URS000080E1D7 N/A synthetic
    construct
    32630    		 23273991 Assembly2
    rna:F:1~12 1~12
    1852 4gl2:F
    (3.557Å)
    		 12 N/A URS000080E086 N/A synthetic
    construct
    32630    		 23273991 Assembly2
    rna:E:1~12 1~12
    1853 4gpw:A
    (3.0Å)
    		 22 N/A URS000080E281 N/A synthetic
    construct
    32630    		 23436717 Assembly1
    rna:B:25~46 3~17,19~23
    1854 4gpw:B
    (3.0Å)
    		 22 N/A URS000080E281 N/A synthetic
    construct
    32630    		 23436717 Assembly1
    rna:A:2~23 25~39,42~46
    1855 4gpx:A
    (2.6Å)
    		 21 N/A URS000080E281 N/A synthetic
    construct
    32630    		 23436717 Assembly1
    rna:B:26~46 3~16,19~23
    1856 4gpx:B
    (2.6Å)
    		 21 N/A URS000080E281 N/A synthetic
    construct
    32630    		 23436717 Assembly1
    rna:A:3~23 26~39,42~46
    1857 4gpy:A
    (2.8Å)
    		 22 N/A URS000080DDE4 N/A synthetic
    construct
    32630    		 23436717 Assembly1
    rna:B:25~46 3~16,19~23
    1858 4gpy:B
    (2.8Å)
    		 22 N/A URS000080DDE4 N/A synthetic
    construct
    32630    		 23436717 Assembly1
    rna:A:2~23 26~39,42~46
    1859 4h5p:E
    (2.15Å)
    		 14 N/A URS000080DD9D N/A synthetic
    construct
    32630    		 23129612 Assembly1
    rna:E-2:1~14 1,14
    1860 4h5p:F
    (2.15Å)
    		 14 N/A URS000080DD9D N/A synthetic
    construct
    32630    		 23129612 Assembly2
    rna:F-3:1~14 1,14
    1861 4ig8:B
    (2.7Å)
    		 18 N/A URS000080E0DC N/A synthetic
    construct
    32630    		 23319625 Assembly1
    rna:C:1~18 1~18
    1862 4ig8:C
    (2.7Å)
    		 18 N/A URS000080DF0C N/A synthetic
    construct
    32630    		 23319625 Assembly1
    rna:B:1~18 1~18
    1863 4io9:X
    (3.2Å)
    		 2686 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02540
    RF02541    		 Deinococcus
    radiodurans
    1299    		 23414806 Assembly1
    rna:Y:2~123 874~876,927~930,969,2318
    1864 4io9:Y
    (3.2Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E04E RF00001 Deinococcus
    radiodurans
    1299    		 23414806 Assembly1
    rna:X:1~2877 43,80~82,92~93,100,102~103
    1865 4ioa:X
    (3.2Å)
    		 2686 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02540
    RF02541    		 Deinococcus
    radiodurans
    1299    		 23414806 Assembly1
    rna:Y:2~123 874~877,927~931,969
    1866 4ioa:Y
    (3.2Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E04E RF00001 Deinococcus
    radiodurans
    1299    		 23414806 Assembly1
    rna:X:1~2877 43,80~83,92~93,99~104
    1867 4ioc:X
    (3.6Å)
    		 2686 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02540
    RF02541    		 Deinococcus
    radiodurans
    1299    		 23414806 Assembly1
    rna:Y:2~123 874~877,927~931,969,2318~2319
    1868 4ioc:Y
    (3.6Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E04E RF00001 Deinococcus
    radiodurans
    1299    		 23414806 Assembly1
    rna:X:1~2877 43,80~83,92~93,100~104
    1869 4j39:B
    (1.7Å)
    		 19 N/A URS000080DE7E N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B-2:1~19 1~19
    1870 4j50:A
    (1.65Å)
    		 19 N/A URS000080E08C N/A synthetic
    construct
    32630    		 23441937 Assembly1
    rna:B:1~19 3~19
    1871 4j50:B
    (1.65Å)
    		 19 N/A URS000080E08C N/A synthetic
    construct
    32630    		 23441937 Assembly1
    rna:A:1~19 3~19
    1872 4j5v:B
    (2.15Å)
    		 19 N/A URS000080E070 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B-2:201~219 201~219
    1873 4jgn:E
    (1.86Å)
    		 20 N/A URS000080E257 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:E-2:502~521 503~521
    1874 4jk0:B
    (2.3Å)
    		 21 N/A URS000080E221 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B-2:501~521 503~521
    1875 4jnx:B
    (1.95Å)
    		 20 N/A URS000080E27B N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:G:401~420 401~420
    1876 4jnx:G
    (1.95Å)
    		 20 N/A URS000080E27B N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:401~420 401~420
    1877 4jrd:A
    (1.0Å)
    		 11 N/A URS000080E35F N/A synthetic
    construct
    32630    		 23813654 Assembly1
    rna:B:1~11 1~11
    1878 4jrd:B
    (1.0Å)
    		 11 N/A URS000080E35F N/A synthetic
    construct
    32630    		 23813654 Assembly1
    rna:A:1~11 1~11
    1879 4jrt:A
    (2.6Å)
    		 12 N/A URS000080E077 N/A synthetic
    construct
    32630    		 23722840 Assembly1
    rna:B:13~24 1~12
    1880 4jrt:B
    (2.6Å)
    		 12 N/A URS000080DFE3 N/A synthetic
    construct
    32630    		 23722840 Assembly1
    rna:A:1~12 13~24
    1881 4jv5:A
    (3.162Å)
    		 1511 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E23E RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23812587 Assembly1
    rna:X:4~8 530,1397,1492~1493,1544
    rna:Y:31~40 530,1054,1493
    1882 4jv5:Y
    (3.162Å)
    		 10 N/A URS000080E157 N/A synthetic
    construct
    32630    		 23812587 Assembly1
    rna:A:5~1544 34~37
    rna:X:4~8 34~37
    1883 4jya:A
    (3.098Å)
    		 1516 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E30C RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23812587 Assembly1
    rna:X:1~6 514,1383~1384,1470~1471,1476
    rna:Y:31~40 514~515,1037,1471
    1884 4jya:Y
    (3.098Å)
    		 10 N/A URS000080E301 N/A synthetic
    construct
    32630    		 23812587 Assembly1
    rna:A:6~1521 34~37
    rna:X:1~6 34~37
    1885 4k0k:A
    (3.4Å)
    		 1511 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E23E RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23812587 Assembly1
    rna:X:4~8 514,1380,1470~1471,1522
    rna:Y:31~40 514,1037,1470~1471
    1886 4k0k:Y
    (3.4Å)
    		 10 N/A URS000080E248 N/A Thermus
    thermophilus
    HB8
    300852    		 23812587 Assembly1
    rna:A:6~1522 34~37
    rna:X:4~8 34~37
    1887 4k31:B
    (1.415Å)
    		 22 N/A URS000080DEED N/A Leishmania
    38568    		 23898171 Assembly1
    rna:C:2~23 3~17,19~23
    1888 4k31:C
    (1.415Å)
    		 22 N/A URS000080DEED N/A Leishmania
    38568    		 23898171 Assembly1
    rna:B:2~23 3~17,19~23
    1889 4k32:A
    (2.5Å)
    		 21 N/A URS000080DEED N/A Leishmania
    38568    		 23898171 Assembly1
    rna:B:26~46 3~16,19~23
    1890 4k32:B
    (2.5Å)
    		 21 N/A URS000080DEED N/A Leishmania
    38568    		 23898171 Assembly1
    rna:A:3~23 26~39,42~46
    1891 4k4s:B
    (2.4Å)
    		 17 N/A URS000080E0C7 N/A synthetic
    construct
    32630    		 23667424 Assembly1
    rna:C:689~701 601~611
    rna:D:1~4 595~598
    1892 4k4s:C
    (2.4Å)
    		 13 N/A URS000080E237 N/A synthetic
    construct
    32630    		 23667424 Assembly1
    rna:B:595~611 691~701
    1893 4k4s:F
    (2.4Å)
    		 17 N/A URS000080E0C7 N/A synthetic
    construct
    32630    		 23667424 Assembly2
    rna:G:689~701 601~611
    rna:H:1~3 595~598
    1894 4k4s:G
    (2.4Å)
    		 13 N/A URS000080E237 N/A synthetic
    construct
    32630    		 23667424 Assembly2
    rna:F:595~611 691~701
    1895 4k4t:B
    (2.75Å)
    		 17 N/A URS000080DD5A N/A synthetic
    construct
    32630    		 23667424 Assembly1
    rna:C:690~701 601~611
    rna:D:1~4 595~598
    1896 4k4t:C
    (2.75Å)
    		 12 N/A URS000080E152 N/A synthetic
    construct
    32630    		 23667424 Assembly1
    rna:B:595~611 691~701
    1897 4k4t:F
    (2.75Å)
    		 17 N/A URS000080DD5A N/A synthetic
    construct
    32630    		 23667424 Assembly2
    rna:G:690~701 601~611
    rna:H:1~4 595~598
    1898 4k4t:G
    (2.75Å)
    		 12 N/A URS000080E152 N/A synthetic
    construct
    32630    		 23667424 Assembly2
    rna:F:595~611 691~701
    1899 4k4u:B
    (2.85Å)
    		 19 N/A URS000080E26A N/A synthetic
    construct
    32630    		 23667424 Assembly1
    rna:C:687~701 602~613
    rna:D:804~805 596~598
    1900 4k4u:C
    (2.85Å)
    		 15 N/A URS000080DFB4 N/A synthetic
    construct
    32630    		 23667424 Assembly1
    rna:B:596~614 689~701
    << < 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.