SEQ2FUN

FURNA
Download all results in tab-seperated text for 16611 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1801 4db2:H
    (3.157Å)
    		 14 N/A URS000080DF70 N/A synthetic
    construct
    32630    		 22940866 Assembly3
    rna:G:1~13 1~3,5~7,9~14
    1802 4db2:I
    (3.157Å)
    		 14 N/A URS000080DF70 N/A synthetic
    construct
    32630    		 22940866 Assembly2
    rna:J:-1~12 -2~11
    1803 4db2:J
    (3.157Å)
    		 14 N/A URS000080DF70 N/A synthetic
    construct
    32630    		 22940866 Assembly2
    rna:I:-2~11 -1~12
    1804 4dr4:A
    (3.969Å)
    		 1512 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE21 RF00177 Thermus
    thermophilus
    HB8
    300852    		 23322043 Assembly1
    rna:V:1~3 530,1492~1493,1544
    rna:W:28~42 530,1054,1493
    1805 4dr4:W
    (3.969Å)
    		 15 N/A URS000080E1F5 N/A Thermus
    thermophilus
    HB8
    300852    		 23322043 Assembly1
    rna:A:5~1544 34~37
    rna:V:1~3 34~37
    1806 4dr5:A
    (3.45Å)
    		 1512 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE21 RF00177 Thermus
    thermophilus
    HB8
    300852    		 23322043 Assembly1
    rna:V:1~3 530,1492~1493,1544
    rna:W:28~42 530,1054,1493
    1807 4dr5:W
    (3.45Å)
    		 15 N/A URS000080E1F5 N/A Thermus
    thermophilus
    HB8
    300852    		 23322043 Assembly1
    rna:A:5~1544 34~37
    rna:V:1~3 34~37
    1808 4dr6:A
    (3.3Å)
    		 1514 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE21 RF00177 Thermus
    thermophilus
    HB8
    300852    		 23322043 Assembly1
    rna:V:1~4 530,1492~1493
    rna:W:32~40 530,1054,1493
    rna:a:31~41 723,1532~1540
    1809 4dr6:a
    (3.3Å)
    		 11 N/A URS000080E115 N/A Thermus
    thermophilus
    HB8
    300852    		 23322043 Assembly1
    rna:A:5~1541 32,34~40
    1810 4dr7:A
    (3.75Å)
    		 1513 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE21 RF00177 Thermus
    thermophilus
    HB8
    300852    		 23322043 Assembly1
    rna:V:1~4 530,1397,1492~1493
    rna:W:30~40 531,1054,1493
    rna:a:33~40 723,1530~1535,1537~1539
    rna:b:1~3 926,1400~1402,1498
    1811 4dr7:W
    (3.75Å)
    		 11 N/A URS000080E121 N/A Thermus
    thermophilus
    HB8
    300852    		 23322043 Assembly1
    rna:A:5~1540 34,36~37
    rna:V:1~4 34~37
    1812 4e48:A
    (2.5Å)
    		 20 N/A URS000080E27B N/A synthetic
    construct
    32630    		 22731704 Assembly1
    rna:B:21~40 1~20
    1813 4e48:B
    (2.5Å)
    		 20 N/A URS000080E27B N/A synthetic
    construct
    32630    		 22731704 Assembly1
    rna:A:1~20 21~40
    1814 4e48:D
    (2.5Å)
    		 20 N/A URS000080E27B N/A synthetic
    construct
    32630    		 22731704 Assembly2
    rna:D-2:1~20 1~20
    1815 4e5c:A
    (1.7Å)
    		 19 N/A URS000080DF49 N/A synthetic
    construct
    32630    		 22731704 Assembly1
    rna:B:1~19 1~19
    1816 4e5c:B
    (1.7Å)
    		 19 N/A URS000080DF49 N/A synthetic
    construct
    32630    		 22731704 Assembly1
    rna:A:1~19 1~19
    1817 4e8k:A
    (3.03Å)
    		 388 GO:0000373 (P) Group II intron splicing URS000080DE44 RF02001
    RF01998    		 Oceanobacillus
    iheyensis
    182710    		 23101623 Assembly1
    rna:B:1~7 181~184,186,223,358,374~375,37
    7
    1818 4e8t:A
    (3.34Å)
    		 388 GO:0000373 (P) Group II intron splicing URS000080DE44 RF02001
    RF01998    		 Oceanobacillus
    iheyensis
    182710    		 23101623 Assembly1
    rna:B:1~8 181~186,223,374~375,377
    1819 4erd:C
    (2.589Å)
    		 22 N/A URS000080DDC3 N/A Tetrahymena
    thermophila
    5911    		 22705372 Assembly1
    rna:D:117~150 117~120,123~128,142~150
    1820 4erd:D
    (2.589Å)
    		 22 N/A URS000080DDC3 N/A Tetrahymena
    thermophila
    5911    		 22705372 Assembly1
    rna:C:117~150 117~120,123~128,142~150
    1821 4eya:a
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:b:1~12 3~12
    1822 4eya:b
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:a:1~12 3~12
    rna:c:1~12 1~3
    1823 4eya:c
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:d:1~12 3~7,9~12
    rna:b:1~12 1~3
    rna:n:1~12 4~5
    1824 4eya:d
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:c:1~12 3~7,9~12
    rna:e:1~12 1~3
    rna:m:1~12 2~3
    1825 4eya:e
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:f:1~12 3~12
    rna:d:1~12 1~2
    rna:p:1~12 2~3
    1826 4eya:f
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:e:1~12 3~12
    rna:g:1~12 1~3
    1827 4eya:g
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:h:1~12 3~12
    rna:f:1~12 1~3
    1828 4eya:h
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:g:1~12 3~10,12
    rna:i:1~12 1~3
    1829 4eya:i
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:j:1~12 3~12
    rna:h:1~12 1~3
    1830 4eya:j
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:i:1~12 3~12
    1831 4eya:k
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:d:1~12 8~9
    rna:l:1~12 3~12
    1832 4eya:l
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:k:1~12 3~12
    rna:m:1~12 1~3
    1833 4eya:m
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:n:1~12 3~12
    rna:l:1~12 1~3
    1834 4eya:n
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:c:1~12 10~11
    rna:m:1~12 3~12
    rna:o:1~12 1~3
    1835 4eya:o
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:p:1~12 3~7,9~12
    rna:n:1~12 1~3
    1836 4eya:p
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:g:1~12 2~3
    rna:o:1~12 3~7,9~12
    rna:q:1~12 1~3
    1837 4eya:q
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:h:1~12 2~3
    rna:r:1~12 3~12
    rna:p:1~12 1~2
    1838 4eya:r
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:q:1~12 3~12
    rna:s:1~12 1~3
    1839 4eya:s
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:t:1~12 3~12
    rna:r:1~12 1~3
    1840 4eya:t
    (3.2Å)
    		 12 N/A URS000080DF91 N/A synthetic
    construct
    32630    		 22692544 Assembly1
    rna:s:1~12 3~10,12
    1841 4f8u:A
    (2.0Å)
    		 22 N/A URS000080E0C1 N/A synthetic
    construct
    32630    		 24900542 Assembly1
    rna:B:26~46 3~16,19~23
    1842 4f8u:B
    (2.0Å)
    		 21 N/A URS000080DF2F N/A synthetic
    construct
    32630    		 24900542 Assembly1
    rna:A:2~23 26~39,42~46
    1843 4f8v:A
    (2.8Å)
    		 21 N/A URS000080DF2F N/A synthetic
    construct
    32630    		 24900542 Assembly1
    rna:B:26~46 3~16,19~23
    1844 4f8v:B
    (2.8Å)
    		 21 N/A URS000080DF2F N/A synthetic
    construct
    32630    		 24900542 Assembly1
    rna:A:3~23 26~39,42~46
    1845 4far:A
    (2.86Å)
    		 390 GO:0000373 (P) Group II intron splicing URS000080E176 RF02001
    RF01998    		 Oceanobacillus
    iheyensis
    182710    		 23101623 Assembly1
    rna:B:-4~0 1,106,181~186,375
    1846 4faw:A
    (2.7Å)
    		 390 GO:0000373 (P) Group II intron splicing URS000080DF32 RF02001
    RF01998    		 Oceanobacillus
    iheyensis
    182710    		 23101623 Assembly1
    rna:B:1~5 181~186,375
    1847 4fsj:R
    (3.5Å)
    		 14 N/A URS000080E20F N/A Spodoptera
    frugiperda
    7108    		 N/A Assembly1
    rna:R-6:2~15 4~15
    1848 4ftb:R
    (2.7Å)
    		 15 N/A URS000080DF7A N/A Flock
    House
    virus
    12287    		 N/A Assembly1
    rna:R-6:1~15 4~15
    1849 4fte:R
    (3.5Å)
    		 15 N/A URS000080DF7A N/A Spodoptera
    frugiperda
    7108    		 N/A Assembly1
    rna:R-6:1~15 4~15
    1850 4fts:R
    (3.2Å)
    		 15 N/A URS000080DF7A N/A Spodoptera
    frugiperda
    7108    		 N/A Assembly1
    rna:R-6:1~15 4~6,8~15
    1851 4g6p:A
    (2.641Å)
    		 13 N/A URS000080E09E N/A synthetic
    construct
    32630    		 22989273 Assembly1
    rna:B:2~31 -4~-1,1~2,4~8
    rna:C:31~49 -2,1
    1852 4g6p:B
    (2.641Å)
    		 30 N/A URS000080E2DF N/A synthetic
    construct
    32630    		 22989273 Assembly1
    rna:A:-5~8 2~13,25~27
    rna:C:31~49 11~13,15~24,26~31
    1853 4g6p:C
    (2.641Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 22989273 Assembly1
    rna:A:-5~8 36~38,41~42
    rna:B:2~31 31~36,38,40~49
    1854 4g6r:A
    (2.832Å)
    		 13 N/A URS000080E09E N/A synthetic
    construct
    32630    		 22989273 Assembly1
    rna:B:2~13 2~13
    rna:C:15~31 6~7
    rna:D:31~49 3~6
    1855 4g6r:B
    (2.832Å)
    		 12 N/A URS000080E1BF N/A synthetic
    construct
    32630    		 22989273 Assembly1
    rna:A:1~13 2~13
    rna:C:15~31 10~12
    rna:D:31~49 11~13
    1856 4g6r:C
    (2.832Å)
    		 17 N/A URS000080DEF8 N/A synthetic
    construct
    32630    		 22989273 Assembly1
    rna:A:1~13 25~27
    rna:B:2~13 23~25
    rna:D:31~49 15~24,26~31
    1857 4g6r:D
    (2.832Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 22989273 Assembly1
    rna:A:1~13 36~38,41~42
    rna:B:2~13 42~43
    rna:C:15~31 31~36,38,40~49
    1858 4g6s:A
    (2.84Å)
    		 13 N/A URS000080E09E N/A synthetic
    construct
    32630    		 22989273 Assembly1
    rna:B:2~31 2~7,9~13
    rna:C:31~49 4,6
    1859 4g6s:B
    (2.84Å)
    		 30 N/A URS000080E2DF N/A synthetic
    construct
    32630    		 22989273 Assembly1
    rna:A:1~13 2~6,8~13,25~27
    rna:C:31~49 11~13,15~24,26~31
    1860 4g6s:C
    (2.84Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 22989273 Assembly1
    rna:A:1~13 36~38,41~42
    rna:B:2~31 31~36,38,40~49
    1861 4gha:I
    (2.5Å)
    		 12 N/A URS000080E156 N/A synthetic
    construct
    32630    		 23028316 Assembly1
    rna:J:1~12 1~12
    1862 4gha:J
    (2.5Å)
    		 12 N/A URS000080E156 N/A synthetic
    construct
    32630    		 23028316 Assembly1
    rna:I:1~12 1~12
    1863 4ghl:E
    (2.02Å)
    		 18 N/A URS000080DD2A N/A synthetic
    construct
    32630    		 23185024 Assembly1
    rna:F:1~18 1~18
    1864 4ghl:F
    (2.02Å)
    		 18 N/A URS000080DD2A N/A synthetic
    construct
    32630    		 23185024 Assembly1
    rna:E:1~18 1~18
    1865 4gkj:A
    (3.298Å)
    		 1513 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E11D RF00177 Thermus
    thermophilus
    HB8
    300852    		 23781103 Assembly1
    rna:W:1~3 513,1469~1470
    rna:X:31~39 513,1036,1470
    1866 4gkk:A
    (3.2Å)
    		 1513 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E11D RF00177 Thermus
    thermophilus
    HB8
    300852    		 23781103 Assembly1
    rna:W:1~4 513,1469~1470
    rna:X:34~39 513,1036,1470
    1867 4gl2:C
    (3.557Å)
    		 12 N/A URS000080E1D7 N/A synthetic
    construct
    32630    		 23273991 Assembly1
    rna:D:1~12 1~12
    1868 4gl2:D
    (3.557Å)
    		 12 N/A URS000080E086 N/A synthetic
    construct
    32630    		 23273991 Assembly1
    rna:C:1~12 1~12
    1869 4gl2:E
    (3.557Å)
    		 12 N/A URS000080E1D7 N/A synthetic
    construct
    32630    		 23273991 Assembly2
    rna:F:1~12 1~12
    1870 4gl2:F
    (3.557Å)
    		 12 N/A URS000080E086 N/A synthetic
    construct
    32630    		 23273991 Assembly2
    rna:E:1~12 1~12
    1871 4gpw:A
    (3.0Å)
    		 22 N/A URS000080E281 N/A synthetic
    construct
    32630    		 23436717 Assembly1
    rna:B:25~46 3~17,19~23
    1872 4gpw:B
    (3.0Å)
    		 22 N/A URS000080E281 N/A synthetic
    construct
    32630    		 23436717 Assembly1
    rna:A:2~23 25~39,42~46
    1873 4gpx:A
    (2.6Å)
    		 21 N/A URS000080E281 N/A synthetic
    construct
    32630    		 23436717 Assembly1
    rna:B:26~46 3~16,19~23
    1874 4gpx:B
    (2.6Å)
    		 21 N/A URS000080E281 N/A synthetic
    construct
    32630    		 23436717 Assembly1
    rna:A:3~23 26~39,42~46
    1875 4gpy:A
    (2.8Å)
    		 22 N/A URS000080DDE4 N/A synthetic
    construct
    32630    		 23436717 Assembly1
    rna:B:25~46 3~16,19~23
    1876 4gpy:B
    (2.8Å)
    		 22 N/A URS000080DDE4 N/A synthetic
    construct
    32630    		 23436717 Assembly1
    rna:A:2~23 26~39,42~46
    1877 4h5p:E
    (2.15Å)
    		 14 N/A URS000080DD9D N/A synthetic
    construct
    32630    		 23129612 Assembly1
    rna:E-2:1~14 1,14
    1878 4h5p:F
    (2.15Å)
    		 14 N/A URS000080DD9D N/A synthetic
    construct
    32630    		 23129612 Assembly2
    rna:F-3:1~14 1,14
    1879 4ig8:B
    (2.7Å)
    		 18 N/A URS000080E0DC N/A synthetic
    construct
    32630    		 23319625 Assembly1
    rna:C:1~18 1~18
    1880 4ig8:C
    (2.7Å)
    		 18 N/A URS000080DF0C N/A synthetic
    construct
    32630    		 23319625 Assembly1
    rna:B:1~18 1~18
    1881 4io9:X
    (3.2Å)
    		 2686 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02541 Deinococcus
    radiodurans
    1299    		 23414806 Assembly1
    rna:Y:2~123 874~876,927~930,969,2318
    1882 4io9:Y
    (3.2Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E04E RF00001 Deinococcus
    radiodurans
    1299    		 23414806 Assembly1
    rna:X:1~2877 43,80~82,92~93,100,102~103
    1883 4ioa:X
    (3.2Å)
    		 2686 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02541 Deinococcus
    radiodurans
    1299    		 23414806 Assembly1
    rna:Y:2~123 874~877,927~931,969
    1884 4ioa:Y
    (3.2Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E04E RF00001 Deinococcus
    radiodurans
    1299    		 23414806 Assembly1
    rna:X:1~2877 43,80~83,92~93,99~104
    1885 4ioc:X
    (3.6Å)
    		 2686 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02541 Deinococcus
    radiodurans
    1299    		 23414806 Assembly1
    rna:Y:2~123 874~877,927~931,969,2318~2319
    1886 4ioc:Y
    (3.6Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E04E RF00001 Deinococcus
    radiodurans
    1299    		 23414806 Assembly1
    rna:X:1~2877 43,80~83,92~93,100~104
    1887 4j39:B
    (1.7Å)
    		 19 N/A URS000080DE7E N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B-2:1~19 1~19
    1888 4j50:A
    (1.65Å)
    		 19 N/A URS000080E08C N/A synthetic
    construct
    32630    		 23441937 Assembly1
    rna:B:1~19 3~19
    1889 4j50:B
    (1.65Å)
    		 19 N/A URS000080E08C N/A synthetic
    construct
    32630    		 23441937 Assembly1
    rna:A:1~19 3~19
    1890 4j5v:B
    (2.15Å)
    		 19 N/A URS000080E070 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B-2:201~219 201~219
    1891 4jgn:E
    (1.86Å)
    		 20 N/A URS000080E257 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:E-2:502~521 503~521
    1892 4jk0:B
    (2.3Å)
    		 21 N/A URS000080E221 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B-2:501~521 503~521
    1893 4jnx:B
    (1.95Å)
    		 20 N/A URS000080E27B N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:G:401~420 401~420
    1894 4jnx:G
    (1.95Å)
    		 20 N/A URS000080E27B N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:401~420 401~420
    1895 4jrd:A
    (1.0Å)
    		 11 N/A URS000080E35F N/A synthetic
    construct
    32630    		 23813654 Assembly1
    rna:B:1~11 1~11
    1896 4jrd:B
    (1.0Å)
    		 11 N/A URS000080E35F N/A synthetic
    construct
    32630    		 23813654 Assembly1
    rna:A:1~11 1~11
    1897 4jrt:A
    (2.6Å)
    		 12 N/A URS000080E077 N/A synthetic
    construct
    32630    		 23722840 Assembly1
    rna:B:13~24 1~12
    1898 4jrt:B
    (2.6Å)
    		 12 N/A URS000080DFE3 N/A synthetic
    construct
    32630    		 23722840 Assembly1
    rna:A:1~12 13~24
    1899 4jv5:A
    (3.162Å)
    		 1511 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E23E RF00177 Thermus
    thermophilus
    HB8
    300852    		 23812587 Assembly1
    rna:X:4~8 530,1397,1492~1493,1544
    rna:Y:31~40 530,1054,1493
    1900 4jv5:Y
    (3.162Å)
    		 10 N/A URS000080E157 N/A synthetic
    construct
    32630    		 23812587 Assembly1
    rna:A:5~1544 34~37
    rna:X:4~8 34~37
    << < 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.