SEQ2FUN

FURNA
Download all results in tab-seperated text for 16611 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    101 1hnz:A
    (3.3Å)
    		 1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177 Thermus
    thermophilus
    274    		 11163189 Assembly1
    rna:X:1~6 693,788~789,926,1400~1401,1498
    ,1505~1506
    102 1hr0:A
    (3.2Å)
    		 1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177 Thermus
    thermophilus
    274    		 11228145 Assembly1
    rna:X:1~6 693,788~789,926,1400~1401,1498
    ,1505~1506
    103 1i2x:A
    (2.4Å)
    		 11 N/A N/A N/A N/A 11333021 Assembly1
    rna:B:21~31 1~7,9~11
    104 1i2x:B
    (2.4Å)
    		 11 N/A N/A N/A N/A 11333021 Assembly1
    rna:A:1~11 21~27,29~31
    105 1i2x:C
    (2.4Å)
    		 11 N/A N/A N/A N/A 11333021 Assembly2
    rna:D:101~111 121~127,129~131
    106 1i2x:D
    (2.4Å)
    		 11 N/A N/A N/A N/A 11333021 Assembly2
    rna:C:121~131 101~107,109~111
    107 1i2y:A
    (1.66Å)
    		 11 N/A N/A N/A N/A 11333021 Assembly1
    rna:B:21~31 1~7,9~11
    108 1i2y:B
    (1.66Å)
    		 11 N/A N/A N/A N/A 11333021 Assembly1
    rna:A:1~11 21~27,29~31
    109 1i2y:C
    (1.66Å)
    		 11 N/A N/A N/A N/A 11333021 Assembly2
    rna:D:121 101~107,109~111
    110 1i2y:D
    (1.66Å)
    		 11 N/A N/A N/A N/A 11333021 Assembly2
    rna:C:101~111 121~127,129~131
    111 1i2y:E
    (1.66Å)
    		 11 N/A N/A N/A N/A 11333021 Assembly3
    rna:F:221~231 201~207,209~211
    112 1i2y:F
    (1.66Å)
    		 11 N/A N/A N/A N/A 11333021 Assembly3
    rna:E:201~211 221~227,229~231
    113 1i9x:A
    (2.18Å)
    		 13 N/A URS000080E04A N/A synthetic
    construct
    32630    		 11350032 Assembly1
    rna:B:1~13 1~4,6~13
    114 1i9x:B
    (2.18Å)
    		 13 N/A URS000080E04A N/A synthetic
    construct
    32630    		 11350032 Assembly1
    rna:A:1~13 1~4,6~13
    115 1ibk:A
    (3.31Å)
    		 1506 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177 Thermus
    thermophilus
    274    		 11340196 Assembly1
    rna:X:1~6 693,788~789,926,1400,1498,1505
    ~1506
    116 1ibl:A
    (3.11Å)
    		 1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177 Thermus
    thermophilus
    274    		 11340196 Assembly1
    rna:X:1~6 693,788~789,926,1400,1498,1505
    ~1506
    rna:Y:28~42 530~531,1054,1493
    rna:Z:1~4 530,1397,1492~1493
    117 1ibl:Y
    (3.11Å)
    		 15 N/A URS000080E1F5 N/A synthetic
    construct
    32630    		 11340196 Assembly1
    rna:A:5~1534 34~37
    rna:Z:1~4 34~37
    118 1ibm:A
    (3.31Å)
    		 1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177 Thermus
    thermophilus
    274    		 11340196 Assembly1
    rna:X:1~6 693,789,926,1400~1401,1498,150
    5~1506
    rna:Y:30~40 530,1054,1493
    rna:Z:1~4 530,1397,1492~1493
    119 1ibm:Y
    (3.31Å)
    		 11 N/A URS000080E1F5 N/A synthetic
    construct
    32630    		 11340196 Assembly1
    rna:A:5~1534 34~37
    rna:Z:1~4 34~37
    120 1ik5:A
    (1.8Å)
    		 14 N/A URS000080E241 N/A synthetic
    construct
    32630    		 11680847 Assembly1
    rna:B:15~28 1~6,8~14
    121 1ik5:B
    (1.8Å)
    		 14 N/A URS000080DFEB N/A synthetic
    construct
    32630    		 11680847 Assembly1
    rna:A:1~14 15~20,22~28
    122 1j7t:A
    (2.5Å)
    		 21 N/A URS000080E2C5 N/A synthetic
    construct
    32630    		 11587639 Assembly1
    rna:B:24~44 2~15,18~22
    123 1j7t:B
    (2.5Å)
    		 21 N/A URS000080E2C5 N/A synthetic
    construct
    32630    		 11587639 Assembly1
    rna:A:2~22 24~37,40~44
    124 1jbr:C
    (2.15Å)
    		 18 N/A URS000080E335 N/A synthetic
    construct
    32630    		 11685244 Assembly1
    rna:F:18~30 0~14,17
    125 1jbr:F
    (2.15Å)
    		 13 N/A URS000080E0E4 N/A synthetic
    construct
    32630    		 11685244 Assembly1
    rna:C:0~17 18~30
    126 1jgo:1
    (5.6Å)
    		 27 N/A N/A N/A N/A 11511350 Assembly1
    rna:B:1~76 19~21
    rna:C:1~76 16~18
    127 1jgo:B
    (5.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS000011107D RF00005 synthetic
    construct
    32630    		 11511350 Assembly1
    rna:1:1~27 34~36
    128 1jgo:C
    (5.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS000011107D RF00005 synthetic
    construct
    32630    		 11511350 Assembly1
    rna:1:1~27 34~36
    129 1jgp:1
    (7.0Å)
    		 32 N/A N/A N/A N/A 11511350 Assembly1
    rna:B:1~76 19~21
    rna:C:1~76 16~18
    130 1jgp:B
    (7.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS000011107D RF00005 synthetic
    construct
    32630    		 11511350 Assembly1
    rna:1:1~32 34~36
    131 1jgp:C
    (7.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS000011107D RF00005 synthetic
    construct
    32630    		 11511350 Assembly1
    rna:1:1~32 34~36
    132 1jgq:1
    (5.0Å)
    		 36 N/A N/A N/A N/A 11511350 Assembly1
    rna:B:1~76 21~26,28~31
    rna:C:1~76 16~18
    133 1jgq:B
    (5.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS000011107D RF00005 synthetic
    construct
    32630    		 11511350 Assembly1
    rna:1:1~36 32,34~40
    134 1jgq:C
    (5.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS000011107D RF00005 synthetic
    construct
    32630    		 11511350 Assembly1
    rna:1:1~36 34~36
    135 1jj2:0
    (2.4Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540 Haloarcula
    marismortui
    2238    		 11483524 Assembly1
    rna:9:1~122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    136 1jj2:9
    (2.4Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 11483524 Assembly1
    rna:0:10~2914 80~83,87,91,100~101,103~105
    137 1ju1:A

    		 23 N/A URS000080DD3F N/A synthetic
    construct
    32630    		 10447199 Assembly1
    rna:B:24~46 1~23
    138 1ju1:B

    		 23 N/A URS000080DD3F N/A synthetic
    construct
    32630    		 10447199 Assembly1
    rna:A:1~23 24~46
    139 1k73:A
    (3.01Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540 Haloarcula
    marismortui
    2238    		 12860128 Assembly1
    rna:B:3001~3122 955~958,1011,1013~1015,1084,10
    99,1124,1130~1132
    140 1k73:B
    (3.01Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 12860128 Assembly1
    rna:A:10~2914 3080~3083,3087,3091,3100~3105
    141 1k8a:A
    (3.0Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540 Haloarcula
    marismortui
    2238    		 12150912 Assembly1
    rna:B:3001~3122 955~958,1011,1013~1015,1084,10
    99,1124,1130~1132
    142 1k8a:B
    (3.0Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 12150912 Assembly1
    rna:A:10~2914 3080~3083,3087,3091,3100~3105
    143 1k8s:A

    		 13 N/A URS000080E270 N/A synthetic
    construct
    32630    		 10903860 Assembly1
    rna:B:14~25 1~13
    144 1k8s:B

    		 12 N/A URS000080DDAD N/A synthetic
    construct
    32630    		 10903860 Assembly1
    rna:A:1~13 14~25
    145 1k9m:A
    (3.0Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540 Haloarcula
    marismortui
    2238    		 12150912 Assembly1
    rna:B:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    146 1k9m:B
    (3.0Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 12150912 Assembly1
    rna:A:10~2914 3080~3083,3087,3091,3100~3101,
    3103~3105
    147 1k9w:A
    (3.1Å)
    		 23 N/A URS000080DFB5 N/A synthetic
    construct
    32630    		 11702070 Assembly1
    rna:B:1 10~16
    148 1k9w:B
    (3.1Å)
    		 23 N/A URS000080DFB5 N/A synthetic
    construct
    32630    		 11702070 Assembly1
    rna:A:1~23 10~16
    149 1k9w:C
    (3.1Å)
    		 23 N/A URS000080DFB5 N/A synthetic
    construct
    32630    		 11702070 Assembly2
    rna:D:1 10~16
    150 1k9w:D
    (3.1Å)
    		 23 N/A URS000080DFB5 N/A synthetic
    construct
    32630    		 11702070 Assembly2
    rna:C:1~23 10~16
    151 1kc8:A
    (3.01Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540 Haloarcula
    marismortui
    2238    		 12860128 Assembly1
    rna:B:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    152 1kc8:B
    (3.01Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 12860128 Assembly1
    rna:A:10~2914 3080~3083,3087,3091,3100~3105
    153 1kd1:A
    (3.0Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540 Haloarcula
    marismortui
    2238    		 12150912 Assembly1
    rna:B:3001~3122 955~958,1011,1013~1015,1084,10
    99,1124,1130~1132
    154 1kd1:B
    (3.0Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 12150912 Assembly1
    rna:A:10~2914 3080~3083,3087,3091,3100~3105
    155 1kd3:A
    (1.8Å)
    		 11 N/A URS000080E064 N/A synthetic
    construct
    32630    		 12595698 Assembly1
    rna:B:1~11 1~11
    156 1kd3:B
    (1.8Å)
    		 11 N/A URS000080E064 N/A synthetic
    construct
    32630    		 12595698 Assembly1
    rna:A:1~11 1~11
    157 1kd4:A
    (1.85Å)
    		 11 N/A URS000080E064 N/A synthetic
    construct
    32630    		 12595698 Assembly1
    rna:B:1~11 1~11
    158 1kd4:B
    (1.85Å)
    		 11 N/A URS000080E064 N/A synthetic
    construct
    32630    		 12595698 Assembly1
    rna:A:1~11 1~11
    159 1kd5:A
    (1.58Å)
    		 11 N/A URS000080E064 N/A synthetic
    construct
    32630    		 12595698 Assembly1
    rna:B:1~11 1~11
    160 1kd5:B
    (1.58Å)
    		 11 N/A URS000080E064 N/A synthetic
    construct
    32630    		 12595698 Assembly1
    rna:A:1~11 1~11
    161 1kfo:A
    (1.6Å)
    		 19 N/A URS000080DD52 N/A synthetic
    construct
    32630    		 12166647 Assembly1
    rna:A-2:1~19 1~18
    162 1kis:A

    		 16 N/A URS000080E1E1 N/A synthetic
    construct
    32630    		 9193000 Assembly1
    rna:B:17~32 5~12
    163 1kis:B

    		 16 N/A URS000080DEAF N/A synthetic
    construct
    32630    		 9193000 Assembly1
    rna:A:1~16 21~27
    164 1koc:A

    		 11 N/A URS000080E0C2 N/A synthetic
    construct
    32630    		 8650546 Assembly1
    rna:B:27 5~15
    165 1koc:B

    		 14 N/A URS000080E291 N/A synthetic
    construct
    32630    		 8650546 Assembly1
    rna:A:5~15 27~31,35~40
    166 1kod:A

    		 11 N/A URS000080E00C N/A synthetic
    construct
    32630    		 8650546 Assembly1
    rna:B:27 5~7,9~15
    167 1kod:B

    		 14 N/A URS000080E278 N/A synthetic
    construct
    32630    		 8650546 Assembly1
    rna:A:5~15 27~30,35~40
    168 1kqs:0
    (3.1Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540 Haloarcula
    marismortui
    2238    		 11828326 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    rna:3:74~76 2284~2286,2485~2486,2637
    rna:4:74~75 2542,2588~2590
    169 1kqs:9
    (3.1Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 11828326 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3105
    170 1lc4:A
    (2.54Å)
    		 21 N/A URS000080E29E N/A synthetic
    construct
    32630    		 12079787 Assembly1
    rna:B:26~46 3~16,19~23
    171 1lc4:B
    (2.54Å)
    		 21 N/A URS000080E29E N/A synthetic
    construct
    32630    		 12079787 Assembly1
    rna:A:3~23 26~39,42~46
    172 1lmv:B

    		 10 N/A URS000080E2FE N/A Saccharomyces
    cerevisiae
    4932    		 12426583
    403

    168

    387    		 Assembly1
    rna:A:1~9 1~10
    173 1lnt:A
    (1.7Å)
    		 12 N/A URS000080E184 N/A synthetic
    construct
    32630    		 12777762 Assembly1
    rna:B:13~24 1~12
    174 1lnt:B
    (1.7Å)
    		 12 N/A URS000080DF26 N/A synthetic
    construct
    32630    		 12777762 Assembly1
    rna:A:1~12 13~24
    175 1lpw:B

    		 10 N/A URS000080E2FE N/A Saccharomyces
    cerevisiae
    4932    		 12426583
    403

    168

    387    		 Assembly1
    rna:A:1~9 1~10
    176 1m1k:A
    (3.2Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540 Haloarcula
    marismortui
    2238    		 12150912 Assembly1
    rna:B:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    177 1m1k:B
    (3.2Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 12150912 Assembly1
    rna:A:10~2914 3080~3083,3087,3091,3100~3101,
    3103~3105
    178 1m5k:A
    (2.4Å)
    		 21 N/A URS000080E1CE N/A synthetic
    construct
    32630    		 11298439 Assembly2
    rna:B:1~92 1~21
    179 1m5k:B
    (2.4Å)
    		 92 GO:0004540 (F) RNA nuclease activity URS000080E2EB RF04190 synthetic
    construct
    32630    		 11298439 Assembly2
    rna:A:1~21 1~9,11~14,25~27,55,57,61,85~91
    180 1m5k:D
    (2.4Å)
    		 21 N/A URS000080E1CE N/A synthetic
    construct
    32630    		 11298439 Assembly1
    rna:E:1~92 1~21
    181 1m5k:E
    (2.4Å)
    		 92 GO:0004540 (F) RNA nuclease activity URS000080E2EB RF04190 synthetic
    construct
    32630    		 11298439 Assembly1
    rna:D:1~21 1~9,11~14,25~27,55,57,61,85~91
    182 1m5o:A
    (2.2Å)
    		 21 N/A URS000080E1CE N/A synthetic
    construct
    32630    		 12376595 Assembly1
    rna:B:1~92 2~21
    183 1m5o:B
    (2.2Å)
    		 92 GO:0004540 (F) RNA nuclease activity URS000080E2EB RF04190 synthetic
    construct
    32630    		 12376595 Assembly1
    rna:A:1~21 1~9,11~14,25~27,55,57,60~61,85
    ~86,88~91
    184 1m5o:D
    (2.2Å)
    		 21 N/A URS000080E1CE N/A synthetic
    construct
    32630    		 12376595 Assembly2
    rna:E:1~92 1~21
    185 1m5o:E
    (2.2Å)
    		 92 GO:0004540 (F) RNA nuclease activity URS000080E2EB RF04190 synthetic
    construct
    32630    		 12376595 Assembly2
    rna:D:1~21 1~14,25~27,55,57,60~61,84~92
    186 1m5p:A
    (2.6Å)
    		 12 N/A URS000080DFCC N/A synthetic
    construct
    32630    		 12376595 Assembly1
    rna:B:1~92 2~12
    187 1m5p:B
    (2.6Å)
    		 92 GO:0004540 (F) RNA nuclease activity URS000080E2EB RF04190 synthetic
    construct
    32630    		 12376595 Assembly1
    rna:A:1~12 8,11~14,57,60~61,85~91
    rna:M:13~21 1~9,25~27,55,57
    188 1m5p:D
    (2.6Å)
    		 12 N/A URS000080DFCC N/A synthetic
    construct
    32630    		 12376595 Assembly2
    rna:E:1~92 1~12
    189 1m5p:E
    (2.6Å)
    		 92 GO:0004540 (F) RNA nuclease activity URS000080E2EB RF04190 synthetic
    construct
    32630    		 12376595 Assembly2
    rna:D:1~12 8~14,57,60~61,85~92
    rna:P:13~21 1~9,25~27,55,57
    190 1m5v:A
    (2.4Å)
    		 12 N/A URS000080DFCC N/A synthetic
    construct
    32630    		 12376595 Assembly1
    rna:B:1~92 2~12
    191 1m5v:B
    (2.4Å)
    		 92 GO:0004540 (F) RNA nuclease activity URS000080E2EB RF04190 synthetic
    construct
    32630    		 12376595 Assembly1
    rna:A:1~12 8,11~14,57,60~61,85~91
    rna:M:13~21 1~9,25~27,55,57
    192 1m5v:D
    (2.4Å)
    		 12 N/A URS000080DFCC N/A synthetic
    construct
    32630    		 12376595 Assembly2
    rna:E:1~92 1~12
    193 1m5v:E
    (2.4Å)
    		 92 GO:0004540 (F) RNA nuclease activity URS000080E2EB RF04190 synthetic
    construct
    32630    		 12376595 Assembly2
    rna:D:1~12 8,11~14,57,60~61,85~92
    rna:P:13~21 1~7,9,25~27,55,57
    194 1m90:A
    (2.8Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540 Haloarcula
    marismortui
    2238    		 12185246 Assembly1
    rna:B:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    rna:5:9074~9076 2284~2286,2485~2486,2636
    195 1m90:B
    (2.8Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 12185246 Assembly1
    rna:A:10~2914 3080~3083,3087,3091,3100~3101,
    3103~3105
    196 1mhk:L
    (2.5Å)
    		 14 N/A URS000080DEAA N/A synthetic
    construct
    32630    		 12554875 Assembly1
    rna:S:1~12 6~14
    197 1mhk:S
    (2.5Å)
    		 12 N/A URS000080E004 N/A synthetic
    construct
    32630    		 12554875 Assembly1
    rna:L:1~14 1~10
    198 1mj1:C
    (13.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Escherichia
    coli
    562    		 12379845 Assembly1
    rna:R:1~27 11~12
    199 1mj1:R
    (13.0Å)
    		 27 N/A URS000080DD40 N/A Escherichia
    coli
    562    		 12379845 Assembly1
    rna:C:1~76 4~5
    200 1mji:C
    (2.5Å)
    		 34 N/A URS000080E085 N/A Escherichia
    coli
    562    		 12515387 Assembly1
    rna:D:26~59 45~47
    << < 1 2 3 4 5 6 7 8 9 10 11 12 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.