SEQ2FUN

FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    2701 4v57:BA
    (3.5Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 17696316 Assembly1
    rna:BB:1~2903 41,78~81,89,96~97,99~100
    2702 4v57:BB
    (3.5Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    562    		 17696316 Assembly1
    rna:AA:5~1534 1689,1700~1704,1832,1837,1848,
    1912~1916,1919~1920,1947~1948,
    1959~1961
    rna:BA:2~118 861~863,915~919,958,2339
    2703 4v57:CA
    (3.5Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 17696316 Assembly2
    rna:DB:1~2903 702,784,899,1407~1410,1418,142
    9~1430,1475,1483~1484,1493~149
    6,1517
    2704 4v57:DA
    (3.5Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 17696316 Assembly2
    rna:DB:1~2903 78~81,89,96~97,99~100
    2705 4v57:DB
    (3.5Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    562    		 17696316 Assembly2
    rna:CA:5~1534 1689,1700,1702~1704,1832,1837,
    1848,1912~1916,1919~1920,1947~
    1948,1959~1961
    rna:DA:2~118 861~863,915~919,958
    2706 4v5a:AA
    (3.5Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 17660830 Assembly1
    rna:AV:26~42 790,966,1229,1338~1340,1400
    rna:AW:1~77 693~695,1340
    rna:AX:12~22 530,693,926,1397,1400,1402,149
    2~1493,1498,1505~1506
    rna:BA:6~2897 702,784,899,1408~1409,1418,142
    9,1442A,1473~1475,1483~1484,14
    94~1495,1517
    2707 4v5a:AV
    (3.5Å)
    		 17 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 synthetic
    construct
    32630    		 17660830 Assembly1
    rna:AA:5~1531 29~31,33,37,39~40
    rna:AX:12~22 33~36
    2708 4v5a:AW
    (3.5Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 17660830 Assembly1
    rna:AA:5~1531 35~36,38~39
    rna:BA:6~2897 18,20,57,72~73,77
    2709 4v5a:AX
    (3.5Å)
    		 11 N/A N/A N/A synthetic
    construct
    32630    		 17660830 Assembly1
    rna:AA:5~1531 13,15~22
    rna:AV:26~42 16~18
    2710 4v5a:BA
    (3.5Å)
    		 2767 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E107 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 17660830 Assembly1
    rna:AA:5~1531 1689,1700~1704,1832,1837,1848,
    1912~1913,1915~1916,1919~1920,
    1947~1948,1959~1961,2863
    rna:AW:1~77 1851~1852,2112,2169,2180,2394~
    2395,2421~2422,2432
    rna:BB:1~119 861~863,917~919
    2711 4v5a:BB
    (3.5Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 17660830 Assembly1
    rna:BA:6~2897 78~81,88,100~101
    2712 4v5a:CA
    (3.5Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 17660830 Assembly2
    rna:CV:26~42 790,966,1229,1338~1340,1400
    rna:CW:1~77 693,1340
    rna:CX:12~22 530,693,926,1397,1400,1402~140
    3,1493,1498,1505~1506
    rna:DA:6~2897 702,784,899,1407~1409,1418,142
    9,1442A,1473~1475,1483~1485,14
    93~1495,1517
    2713 4v5a:CV
    (3.5Å)
    		 17 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 synthetic
    construct
    32630    		 17660830 Assembly2
    rna:CA:5~1531 29~31,33,37~38,40
    rna:CX:12~22 33~36
    2714 4v5a:CW
    (3.5Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 17660830 Assembly2
    rna:CA:5~1531 35~36,38
    rna:DA:6~2897 20,57,72~73,77
    2715 4v5a:CX
    (3.5Å)
    		 11 N/A N/A N/A synthetic
    construct
    32630    		 17660830 Assembly2
    rna:CA:5~1531 13,15~19,21~22
    rna:CV:26~42 16~18
    2716 4v5a:DA
    (3.5Å)
    		 2767 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E107 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 17660830 Assembly2
    rna:CA:5~1531 1689,1701~1704,1832,1837,1848,
    1912~1913,1915~1916,1919~1920,
    1947~1948,1959~1961,2863~2864
    rna:CW:1~77 1851~1852,2112,2169,2394~2395,
    2421~2422,2432
    rna:DB:1~119 861~863,917~919
    2717 4v5a:DB
    (3.5Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 17660830 Assembly2
    rna:DA:6~2897 78~81,88,100~101
    2718 4v5b:AA
    (3.74Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 18288106 Assembly1
    rna:AB:1~2903 78~81,89~90,96~97,99~101
    2719 4v5b:AB
    (3.74Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    562    		 18288106 Assembly1
    rna:AA:2~118 861~864,915,917~919,958
    rna:BA:5~1534 1686,1689,1700~1704,1831~1832,
    1837,1846,1848,1912~1914,1916,
    1919~1920,1947~1950,1959~1960
    2720 4v5b:BA
    (3.74Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 18288106 Assembly1
    rna:AB:1~2903 702,784,899,1407~1410,1418~142
    0,1428~1429,1473~1475,1483~148
    4,1492,1494~1495,1517
    2721 4v5b:CA
    (3.74Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 18288106 Assembly2
    rna:CB:1~2903 41,78~81,89~90,96~97,99~101
    2722 4v5b:CB
    (3.74Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    562    		 18288106 Assembly2
    rna:CA:2~118 861~864,915,917~919,958
    rna:DA:5~1534 1701~1704,1832,1837,1848,1912~
    1914,1916~1917,1919~1920,1947~
    1949,1959~1960
    2723 4v5b:DA
    (3.74Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 18288106 Assembly2
    rna:CB:1~2903 702,784,899,1407~1409,1418~141
    9,1429,1473~1474,1483~1484,149
    2,1494,1496,1517
    2724 4v5c:AA
    (3.3Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 19363482 Assembly1
    rna:AV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:AX:13~22 530,926,1397,1400~1401,1403,14
    92~1493,1498,1505~1506
    rna:AY:1~77 530~531,1054,1493
    rna:BA:6~2897 702,783~784,899,1407~1409,1418
    ,1429~1430,1442A,1473~1475,148
    3~1484,1494~1496,1517
    2725 4v5c:AV
    (3.3Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    K-12
    83333    		 19363482 Assembly1
    rna:AA:5~1531 30~32,34,38~41
    rna:AX:13~22 34~37
    rna:BA:6~2897 11~13,24~25,74~76
    2726 4v5c:AW
    (3.3Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 19363482 Assembly1
    rna:AV:1~76 35~36
    rna:BA:6~2897 17,19,71~72,76
    2727 4v5c:AX
    (3.3Å)
    		 10 N/A N/A N/A synthetic
    construct
    32630    		 19363482 Assembly1
    rna:AA:5~1531 15~22
    rna:AV:1~76 16~18
    rna:AW:1~76 13~14
    rna:AY:1~77 19~22
    2728 4v5c:AY
    (3.3Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... URS000080E05A RF00005 Escherichia
    coli
    K-12
    83333    		 19363482 Assembly1
    rna:AA:5~1531 34~37
    rna:AX:13~22 34~37
    rna:BA:6~2897 18~19,37~38,55~56,64,74~77
    2729 4v5c:BA
    (3.3Å)
    		 2807 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFF3 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 19363482 Assembly1
    rna:AA:5~1531 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1948,1959~1961,
    2863
    rna:AV:1~76 1907~1909,1922~1924,2251~2253,
    2439,2450~2451,2601~2602
    rna:AW:1~76 1851~1852,2112,2180~2181,2394~
    2395,2421~2422
    rna:AY:1~77 881,896~898,1913,2451~2452,250
    6~2507,2553~2555,2583~2584,260
    2
    rna:BB:1~119 861~863,917~919,1026~1028
    2730 4v5c:BB
    (3.3Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 19363482 Assembly1
    rna:BA:6~2897 78~81,88,97~98,100~101
    2731 4v5c:CA
    (3.3Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 19363482 Assembly2
    rna:CV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:CX:13~22 693,926,1397,1400~1401,1492~14
    93,1498,1505~1506
    rna:CY:1~77 530~531,1054,1493
    rna:DA:6~2897 702,784,899,1407~1409,1418,142
    9,1442A,1473~1475,1483~1484,14
    93~1496,1517
    2732 4v5c:CV
    (3.3Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    K-12
    83333    		 19363482 Assembly2
    rna:CA:5~1531 30~32,34,38~41
    rna:CW:1~76 39~40
    rna:CX:13~22 34~37
    rna:DA:6~2897 11~13,24~25,74~76
    2733 4v5c:CW
    (3.3Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 19363482 Assembly2
    rna:CA:5~1531 35,37
    rna:CX:13~22 34~35
    rna:DA:6~2897 19,56,72,76
    2734 4v5c:CX
    (3.3Å)
    		 10 N/A N/A N/A synthetic
    construct
    32630    		 19363482 Assembly2
    rna:CA:5~1531 13,15~20,22
    rna:CV:1~76 16~18
    rna:CW:1~76 13~14
    rna:CY:1~77 19~22
    2735 4v5c:CY
    (3.3Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... URS000080E05A RF00005 Escherichia
    coli
    K-12
    83333    		 19363482 Assembly2
    rna:CA:5~1531 34~37
    rna:CX:13~22 34~37
    rna:DA:6~2897 19,37~38,55~56,64,74~77
    2736 4v5c:DA
    (3.3Å)
    		 2807 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFF3 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 19363482 Assembly2
    rna:CA:5~1531 1689,1700~1704,1832,1837,1846,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1948,1959~1961,2863~
    2864
    rna:CV:1~76 1907~1909,1922~1924,2063,2251~
    2253,2439,2450~2451,2601~2602
    rna:CW:1~76 1851~1852,2112,2169,2394~2395,
    2421~2422
    rna:CY:1~77 881,897~898,1913,2451~2452,248
    2~2483,2506~2507,2553~2555,258
    3~2585,2602
    rna:DB:1~119 861~863,915,917~919,1026~1027
    2737 4v5c:DB
    (3.3Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 19363482 Assembly2
    rna:DA:6~2897 78~81,88,97~98,100~101
    2738 4v5d:AA
    (3.5Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 19363482 Assembly1
    rna:AV:1~77 790,966,1229~1230,1338~1340,14
    00
    rna:AX:12~22 530,926,1397,1400~1402,1492~14
    93,1498,1503,1505~1506
    rna:AY:1~77 530~531,1054,1493
    rna:BA:6~2897 702,784,899,1407~1409,1418,142
    9,1442A,1473~1475,1483~1484,14
    93~1496,1517
    2739 4v5d:AV
    (3.5Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... URS000080E05A RF00005 Escherichia
    coli
    K-12
    83333    		 19363482 Assembly1
    rna:AA:5~1531 30~32,34,38~41
    rna:AW:1~76 39~40
    rna:AX:12~22 34~37
    rna:AY:1~77 76~77
    rna:BA:6~2897 3,11~13,24,74~77
    2740 4v5d:AW
    (3.5Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 19363482 Assembly1
    rna:BA:6~2897 17,19,56,72,76
    2741 4v5d:AX
    (3.5Å)
    		 11 N/A N/A N/A synthetic
    construct
    32630    		 19363482 Assembly1
    rna:AA:5~1531 12~13,15~22
    rna:AV:1~77 16~18
    rna:AY:1~77 19~22
    2742 4v5d:AY
    (3.5Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... URS000080E05A RF00005 Escherichia
    coli
    K-12
    83333    		 19363482 Assembly1
    rna:AA:5~1531 34~37
    rna:AX:12~22 34~37
    rna:BA:6~2897 19,37~38,55~56,73~77
    2743 4v5d:BA
    (3.5Å)
    		 2807 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFF3 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 19363482 Assembly1
    rna:AA:5~1531 1689,1700~1704,1832,1837,1846,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1948,1959~1961,2863~
    2864
    rna:AV:1~77 1907~1909,1923~1924,2062~2063,
    2251~2253,2255,2439,2450~2451,
    2585,2601~2602
    rna:AW:1~76 1851~1852,2112,2169,2180~2181,
    2394~2395,2421~2422
    rna:AY:1~77 881,895,897,1913,1943,2451~245
    2,2506~2507,2553~2555,2583~258
    5,2602
    rna:BB:1~119 861~863,915,917~919,958,1026
    2744 4v5d:BB
    (3.5Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 19363482 Assembly1
    rna:BA:6~2897 78~81,88,90,97~98,100~101
    2745 4v5d:CA
    (3.5Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 19363482 Assembly2
    rna:CV:1~77 790,966,1229,1338~1340,1400
    rna:CX:12~22 530,926,1397,1400~1403,1492~14
    93,1498,1503,1505~1506
    rna:CY:1~77 530~531,1054,1493
    rna:DA:6~2897 702,784,899,1407~1409,1418,142
    9,1442A,1473~1475,1483~1484,14
    94~1495,1517
    2746 4v5d:CV
    (3.5Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... URS000080E05A RF00005 Escherichia
    coli
    K-12
    83333    		 19363482 Assembly2
    rna:CA:5~1531 30~31,34,38~41
    rna:CW:1~76 39~40
    rna:CX:12~22 34~37
    rna:CY:1~77 76~77
    rna:DA:6~2897 11~13,24,74~77
    2747 4v5d:CW
    (3.5Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 19363482 Assembly2
    rna:CV:1~77 35~36
    rna:DA:6~2897 17,19,56,72,76
    2748 4v5d:CX
    (3.5Å)
    		 11 N/A N/A N/A synthetic
    construct
    32630    		 19363482 Assembly2
    rna:CA:5~1531 12~13,15~22
    rna:CV:1~77 16~18
    rna:CY:1~77 19~21
    2749 4v5d:CY
    (3.5Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... URS000080E05A RF00005 Escherichia
    coli
    K-12
    83333    		 19363482 Assembly2
    rna:CA:5~1531 34~37
    rna:CX:12~22 34~37
    rna:DA:6~2897 19,37~38,55~56,74~77
    2750 4v5d:DA
    (3.5Å)
    		 2807 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFF3 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 19363482 Assembly2
    rna:CA:5~1531 1689,1700~1704,1832,1837,1846,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1949,1959~1961,2863~
    2864
    rna:CV:1~77 1907~1909,1923~1924,2062,2251~
    2253,2439,2450~2451,2585,2601~
    2602
    rna:CW:1~76 1851~1852,2112,2169,2180~2181,
    2394~2395,2421~2422
    rna:CY:1~77 881,897,1913,2451~2452,2506~25
    07,2553~2555,2583~2585,2602
    rna:DB:1~119 861~864,915,917~919,958
    2751 4v5d:DB
    (3.5Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 19363482 Assembly2
    rna:DA:6~2897 78~81,90,97~98,100~102
    2752 4v5e:AA
    (3.45Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 18988853 Assembly1
    rna:AV:1~76 790,966,1229,1338~1340,1400
    rna:AX:17~24 530,926,1400~1401,1492~1493,14
    98,1505~1506
    rna:BA:6~2897 702,783~784,899,1407~1409,1418
    ,1429~1430,1442A,1473~1475,148
    3~1484,1493~1495,1517
    2753 4v5e:AV
    (3.45Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 18988853 Assembly1
    rna:AA:5~1531 30~31,34,38~41
    rna:AX:17~24 34~37
    rna:BA:6~2897 2~3,11~13,24~25,74~76
    2754 4v5e:AW
    (3.45Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 18988853 Assembly1
    rna:BA:6~2897 17,19,71~72,76
    2755 4v5e:BA
    (3.45Å)
    		 2886 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E031 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 18988853 Assembly1
    rna:AA:5~1531 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1948,1959~1961,
    2863~2864
    rna:AV:1~76 1907~1909,1922~1924,2063,2251~
    2253,2255,2450~2451,2601~2602
    rna:AW:1~76 1851~1852,2112,2169,2180~2181,
    2394~2395,2421~2422
    rna:BB:1~119 861~863,917~919,958
    2756 4v5e:BB
    (3.45Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 18988853 Assembly1
    rna:BA:6~2897 78~81,90,97~98,100~101
    2757 4v5e:CA
    (3.45Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 18988853 Assembly2
    rna:CV:1~76 790,966,1229,1338~1340,1400
    rna:CW:1~76 694~695
    rna:CX:17~24 530,926,1400~1401,1492~1493,14
    98,1505~1506
    rna:DA:6~2897 702,783~784,899,1407~1409,1418
    ,1429,1442A,1474~1475,1483~148
    4,1493~1495,1517
    2758 4v5e:CV
    (3.45Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 18988853 Assembly2
    rna:CA:5~1531 30~32,34,38~41
    rna:CX:17~24 34~37
    rna:DA:6~2897 2,11~13,24~25,74~76
    2759 4v5e:CW
    (3.45Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 18988853 Assembly2
    rna:CX:17~24 34~35
    rna:DA:6~2897 17,19,56,71~72,76
    2760 4v5e:DA
    (3.45Å)
    		 2886 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E031 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 18988853 Assembly2
    rna:CA:5~1531 1689,1700~1701,1703~1704,1832,
    1836~1837,1846,1848,1912~1913,
    1915~1916,1919~1920,1947~1948,
    1959~1961,2863~2864
    rna:CV:1~76 1907~1909,1922~1924,2251~2253,
    2255,2450~2451,2601~2602
    rna:CW:1~76 1851~1852,2112,2169,2180~2181,
    2394~2395,2421~2422,2432
    rna:DB:1~119 861~864,917~919,958
    2761 4v5e:DB
    (3.45Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 18988853 Assembly2
    rna:DA:6~2897 78~81,90,97~98,100~101
    2762 4v5f:AA
    (3.6Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 19833919 Assembly1
    rna:AV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:AW:1~77 936,1382
    rna:AX:11~21 693,789,926,1400~1401,1403,149
    2~1493,1498,1505
    rna:BA:6~2897 702,784,899,1407~1409,1418,142
    9~1430,1442A,1475,1483~1484,14
    93~1496,1517
    2763 4v5f:AV
    (3.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    K-12
    83333    		 19833919 Assembly1
    rna:AA:5~1531 30~32,34,38,40~41
    rna:AX:11~21 34~37
    rna:BA:6~2897 11~13,24~25,74~76
    2764 4v5f:AW
    (3.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    K-12
    83333    		 19833919 Assembly1
    rna:AX:11~21 36~37
    rna:BA:6~2897 20~21,72,77
    2765 4v5f:AX
    (3.6Å)
    		 11 N/A N/A N/A synthetic
    construct
    32630    		 19833919 Assembly1
    rna:AA:5~1531 12~14,16~20
    rna:AV:1~76 16~18
    rna:AW:1~77 13~14
    2766 4v5f:BA
    (3.6Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E0F3 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 19833919 Assembly1
    rna:AA:5~1531 1689,1703~1704,1832,1836~1837,
    1848,1912~1916,1919~1920,1947~
    1948,1959~1961,2864
    rna:AV:1~76 1907~1909,1922~1924,2251~2253,
    2255,2450~2451,2585,2601~2602
    rna:AW:1~77 1851,2112,2169,2394~2395,2421~
    2422,2432
    rna:BB:1~119 861~863,915,917~919
    2767 4v5f:BB
    (3.6Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 19833919 Assembly1
    rna:BA:6~2897 78~81,97~98,100~101
    2768 4v5f:CA
    (3.6Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 19833919 Assembly2
    rna:CV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:CW:1~77 936,1382~1383
    rna:CX:11~21 693,789,926,1400~1401,1492~149
    3,1498,1505
    rna:DA:6~2897 702,784,899~900,1407~1409,1418
    ,1429,1442A,1474~1475,1483~148
    4,1494~1496,1517
    2769 4v5f:CV
    (3.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    K-12
    83333    		 19833919 Assembly2
    rna:CA:5~1531 30~32,34,38,40~41
    rna:CX:11~21 34~37
    rna:DA:6~2897 12~13,24~25,74~76
    2770 4v5f:CW
    (3.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    K-12
    83333    		 19833919 Assembly2
    rna:CX:11~21 36~37
    rna:DA:6~2897 18,20~21,72,77
    2771 4v5f:CX
    (3.6Å)
    		 11 N/A N/A N/A synthetic
    construct
    32630    		 19833919 Assembly2
    rna:CA:5~1531 12~14,16~20
    rna:CV:1~76 16~18
    rna:CW:1~77 13~14
    2772 4v5f:DA
    (3.6Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E0F3 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 19833919 Assembly2
    rna:CA:5~1531 1689,1701,1703,1832,1836~1837,
    1848,1912~1916,1919~1920,1947~
    1948,1959~1961,2863~2864
    rna:CV:1~76 1907~1908,1922~1924,2064,2251~
    2253,2450~2451,2585,2601~2602
    rna:CW:1~77 1851,2112,2169,2180,2394~2395,
    2421~2422,2432
    rna:DB:1~119 861~864,915,917~919
    2773 4v5f:DB
    (3.6Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 19833919 Assembly2
    rna:DA:6~2897 78~81,97~98,100~101
    2774 4v5g:AA
    (3.6Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 19833920 Assembly1
    rna:AV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:AW:1~76 694,1340
    rna:AX:15~27 530,926~927,1196,1397,1400~140
    2,1492~1493,1498,1503,1505~150
    6
    rna:AY:1~77 530~531,1054,1492~1493
    rna:BA:6~2897 702,784,899,1407~1409,1418,142
    9,1442A,1473,1475,1483~1484,14
    93~1496,1517
    2775 4v5g:AV
    (3.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 19833920 Assembly1
    rna:AA:5~1531 29~32,34,38~41
    rna:AX:15~27 34~37
    rna:BA:6~2897 3,11~13,24~25,74~76
    2776 4v5g:AW
    (3.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 19833920 Assembly1
    rna:AA:5~1531 36,38
    rna:AX:15~27 34~35
    rna:BA:6~2897 3~4,17,19,70~71,76
    2777 4v5g:AX
    (3.6Å)
    		 13 N/A N/A N/A synthetic
    construct
    32630    		 19833920 Assembly1
    rna:AA:5~1531 15~26
    rna:AV:1~76 19~21
    rna:AW:1~76 17~18
    rna:AY:1~77 22~25
    2778 4v5g:AY
    (3.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E18C RF00005 Thermus
    thermophilus
    HB8
    300852    		 19833920 Assembly1
    rna:AA:5~1531 34~37
    rna:AX:15~27 34~37
    rna:BA:6~2897 20,37,56
    2779 4v5g:BA
    (3.6Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E0F3 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 19833920 Assembly1
    rna:AA:5~1531 1689,1702~1704,1832,1837,1848,
    1895,1912~1913,1915~1916,1919~
    1920,1947~1948,1959~1960,2863~
    2864
    rna:AV:1~76 1907~1909,1922~1924,2064,2251~
    2253,2255,2439,2450~2451,2601~
    2602
    rna:AW:1~76 1850~1851,1893,2110,2112,2169,
    2179~2180,2394~2395,2421~2422,
    2432
    rna:AY:1~77 1066~1067,1913
    rna:BB:1~119 861~864,915,917~919
    2780 4v5g:BB
    (3.6Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 19833920 Assembly1
    rna:BA:6~2897 78~81,97~101
    2781 4v5g:CA
    (3.6Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 19833920 Assembly2
    rna:CV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:CX:15~27 530,926~927,1196,1397,1400~140
    1,1492~1493,1498,1503,1505
    rna:CY:1~77 530~531,1054,1493
    rna:DA:6~2897 702,784,899,1407~1409,1418,142
    9,1442A,1474~1476,1483~1484,14
    93~1496,1517
    2782 4v5g:CV
    (3.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 19833920 Assembly2
    rna:CA:5~1531 30~32,34,38~39,41
    rna:CX:15~27 34~37
    rna:DA:6~2897 3,11~13,24~25,74~76
    2783 4v5g:CW
    (3.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 19833920 Assembly2
    rna:CX:15~27 34~35
    rna:DA:6~2897 3~4,17,19,70~71,76
    2784 4v5g:CX
    (3.6Å)
    		 13 N/A N/A N/A synthetic
    construct
    32630    		 19833920 Assembly2
    rna:CA:5~1531 15~16,18~26
    rna:CV:1~76 19~21
    rna:CW:1~76 17~18
    rna:CY:1~77 22~25
    2785 4v5g:CY
    (3.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E18C RF00005 Thermus
    thermophilus
    HB8
    300852    		 19833920 Assembly2
    rna:CA:5~1531 34~37
    rna:CX:15~27 34~37
    rna:DA:6~2897 20,37~38,56
    2786 4v5g:DA
    (3.6Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E0F3 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 19833920 Assembly2
    rna:CA:5~1531 1689,1700,1703~1704,1832,1837,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1948,1959~1961,2863~
    2864
    rna:CV:1~76 1907~1909,1922~1924,2064,2251~
    2253,2255,2439,2450~2451,2601~
    2602
    rna:CW:1~76 1850~1852,1893,2110,2169,2178~
    2180,2394~2395,2421~2422,2432
    rna:CY:1~77 1066~1067,1913
    rna:DB:1~119 861~864,915~919
    2787 4v5g:DB
    (3.6Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 19833920 Assembly2
    rna:DA:6~2897 78~81,97~101
    2788 4v5h:AA
    (5.8Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E24C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 19933110 Assembly1
    rna:AV:1~76 790,966,1338~1339
    rna:AX:12~22 530,693,788~789,926,1195~1196,
    1397,1400,1493,1498
    rna:BB:1~2903 702,783~784,791,899~900,1407~1
    409,1418,1429,1473~1474,1483~1
    484,1492~1496,1517
    2789 4v5h:AV
    (5.8Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000034D020 RF00005 Escherichia
    coli
    562    		 19933110 Assembly1
    rna:AA:5~1534 30~31,34,38~41
    rna:AX:12~22 34~36
    rna:BB:1~2903 11~13,24~25,74~76
    2790 4v5h:AX
    (5.8Å)
    		 11 N/A N/A N/A synthetic
    construct
    32630    		 19933110 Assembly1
    rna:AA:5~1534 13~22
    rna:AV:1~76 16~18
    2791 4v5h:BA
    (5.8Å)
    		 115 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DF7E RF00001 Escherichia
    coli
    562    		 19933110 Assembly1
    rna:BB:1~2903 78~80,88~89,96~97,99~101
    2792 4v5h:BB
    (5.8Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 19933110 Assembly1
    rna:AA:5~1534 1700~1704,1832,1836~1837,1846,
    1848,1895,1912~1913,1915~1916,
    1919~1920,1922,1947~1948,1959~
    1961
    rna:AV:1~76 1909,1922~1924,2251~2253,2439,
    2450,2602
    rna:BA:2~118 862~863,915~918,958~959
    2793 4v5j:AA
    (3.1Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 20421507 Assembly1
    rna:AV:1~77 790,966,1229,1338~1340,1400
    rna:AX:14~21 530,693,926,1400~1402,1493,149
    8
    rna:BA:6~2897 702,783~784,899,1407~1409,1418
    ,1429,1442A,1473~1475,1483~148
    5,1493~1496,1517
    2794 4v5j:AV
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... URS000080E05A RF00005 Escherichia
    coli
    K-12
    83333    		 20421507 Assembly1
    rna:AA:5~1531 30~31,34,38~41
    rna:AX:14~21 34~37
    rna:BA:6~2897 11~13,24,74~77
    2795 4v5j:AW
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... URS000080E05A RF00005 Escherichia
    coli
    K-12
    83333    		 20421507 Assembly1
    rna:BA:6~2897 19,56,72,76~77
    2796 4v5j:BA
    (3.1Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E0F3 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 20421507 Assembly1
    rna:AA:5~1531 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1949,1959~1961,
    2864
    rna:AV:1~77 1907~1909,1923~1924,2063~2064,
    2251~2253,2450~2451,2585,2601~
    2602
    rna:AW:1~77 248~249,1851,2112,2169,2394~23
    95,2421~2422
    rna:BB:1~119 861~864,915,917~919,958
    2797 4v5j:BB
    (3.1Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 20421507 Assembly1
    rna:BA:6~2897 78~81,90,97~101
    2798 4v5j:CA
    (3.1Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 20421507 Assembly2
    rna:CV:1~77 790,966,1229,1338~1340,1400
    rna:CX:14~21 530,693,926,1400~1401,1492~149
    3,1498
    rna:DA:6~2897 702,784,899,1407~1409,1418,142
    9,1442A,1473~1475,1483~1484,14
    93~1496,1517
    2799 4v5j:CV
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... URS000080E05A RF00005 Escherichia
    coli
    K-12
    83333    		 20421507 Assembly2
    rna:CA:5~1531 30~32,34,38~39,41
    rna:CW:1~77 39~41
    rna:CX:14~21 34~37
    rna:DA:6~2897 11~13,24,74~77
    2800 4v5j:CW
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci... URS000080E05A RF00005 Escherichia
    coli
    K-12
    83333    		 20421507 Assembly2
    rna:CV:1~77 35~36
    rna:DA:6~2897 19,56,71~72,76~77
    << < 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.