SEQ2FUN

FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    2801 4v5j:DA
    (3.1Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E0F3 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 20421507 Assembly2
    rna:CA:5~1531 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1948,1959~1961,
    2864
    rna:CV:1~77 1907~1909,1923~1924,2063~2064,
    2251~2253,2255,2450~2451,2585,
    2601~2602
    rna:CW:1~77 248~249,1851~1852,2112,2169,23
    94~2395,2421~2422,2432
    rna:DB:1~119 861~863,915,917~919,958
    2802 4v5j:DB
    (3.1Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 20421507 Assembly2
    rna:DA:6~2897 78~81,90,97~98,100~101
    2803 4v5k:AA
    (3.2Å)
    		 1508 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 20852642
    16959973    		 Assembly1
    rna:AV:1~76 790,966,1229~1230,1339~1340,14
    00
    rna:AW:1~76 694,789
    rna:AX:10~25 693,926,1196,1397,1400,1402~14
    03,1498,1505
    rna:BA:6~2897 702,784,899,1407~1409,1418,142
    9,1442A,1473~1475,1483~1484,14
    91,1494~1495,1517
    2804 4v5k:AV
    (3.2Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    K-12
    83333    		 20852642
    16959973    		 Assembly1
    rna:AA:3~1533 30~32,34,38~41
    rna:AW:1~76 39~40
    rna:AX:10~25 35~37
    rna:BA:6~2897 3,11~13,24~25,74~76
    2805 4v5k:AW
    (3.2Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    K-12
    83333    		 20852642
    16959973    		 Assembly1
    rna:AA:3~1533 35,38
    rna:BA:6~2897 4,17A,19,56,76
    2806 4v5k:AX
    (3.2Å)
    		 16 N/A N/A N/A synthetic
    construct
    32630    		 20852642
    16959973    		 Assembly1
    rna:AA:3~1533 13,15~21
    rna:AV:1~76 16~18
    2807 4v5k:BA
    (3.2Å)
    		 2807 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E03F RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 20852642
    16959973    		 Assembly1
    rna:AA:3~1533 1689,1701~1704,1832,1837,1846,
    1848,1912~1913,1916,1919~1920,
    1947~1948,1959~1960,2864
    rna:AV:1~76 1907~1909,1922~1924,2063~2064,
    2251~2253,2255,2450~2451,2585,
    2602
    rna:AW:1~76 1885,2112,2180,2394~2395,2421~
    2422
    rna:BB:1~119 861~864,915~919,1027
    2808 4v5k:BB
    (3.2Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 20852642
    16959973    		 Assembly1
    rna:BA:6~2897 78~81,88,97~98,100~101
    2809 4v5k:CA
    (3.2Å)
    		 1508 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 20852642
    16959973    		 Assembly2
    rna:CV:1~76 790,966,1229~1230,1339~1341,14
    00
    rna:CX:12~19 926,1400~1403,1498,1505~1506
    rna:DA:6~2897 702,784,899,1407~1409,1418,142
    9~1430,1442A,1473~1475,1483~14
    85,1491,1494~1496,1517
    2810 4v5k:CV
    (3.2Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    K-12
    83333    		 20852642
    16959973    		 Assembly2
    rna:CA:3~1533 30~32,34,38~41
    rna:CX:12~19 35~37
    rna:DA:6~2897 11~12,24,74~76
    2811 4v5k:CW
    (3.2Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    K-12
    83333    		 20852642
    16959973    		 Assembly2
    rna:CX:12~19 34~35
    rna:DA:6~2897 17A,19,56,72,76
    2812 4v5k:DA
    (3.2Å)
    		 2807 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E03F RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 20852642
    16959973    		 Assembly2
    rna:CA:3~1533 1700~1704,1832,1837,1846,1848,
    1912~1913,1915~1916,1919~1920,
    1947~1949,1959~1961,2864
    rna:CV:1~76 1907~1909,1922~1924,2064,2251~
    2253,2450~2451,2585,2602
    rna:CW:1~76 1852,2112,2180,2394~2395,2421~
    2422
    rna:DB:1~119 861~864,917~919,1027
    2813 4v5k:DB
    (3.2Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 20852642
    16959973    		 Assembly2
    rna:DA:6~2897 78~81,88,97~98,100~101
    2814 4v5l:AA
    (3.1Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 21051640 Assembly1
    rna:AV:1~76 790,966,1229,1338~1340,1400
    rna:AW:1~76 693~694,1382
    rna:AX:14~27 530,926~928,1196,1397,1400~140
    1,1403,1492~1493,1498,1503,150
    5
    rna:AY:1~77 530~531,1054,1493
    rna:BA:6~2897 702,784,899,1407~1409,1418~141
    9,1429,1474~1475,1483~1484,149
    4~1496,1517
    2815 4v5l:AV
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 21051640 Assembly1
    rna:AA:5~1531 29~32,34,38~41
    rna:AX:14~27 34~37
    rna:BA:6~2897 11~12,24~25,74~76
    2816 4v5l:AW
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 21051640 Assembly1
    rna:AA:5~1531 34,37~38
    rna:AX:14~27 34~35
    rna:BA:6~2897 3~4,17,19~20,70~71,76
    2817 4v5l:AX
    (3.1Å)
    		 14 N/A N/A N/A Escherichia
    coli
    K-12
    83333    		 21051640 Assembly1
    rna:AA:5~1531 15~16,18~27
    rna:AV:1~76 19~21
    rna:AW:1~76 17~18
    rna:AY:1~77 22~24
    2818 4v5l:AY
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E2EE RF00005 Escherichia
    coli
    K-12
    83333    		 21051640 Assembly1
    rna:AA:5~1531 34~37
    rna:AX:14~27 34~37
    rna:BA:6~2897 25,38,56
    2819 4v5l:BA
    (3.1Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E1F7 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 21051640 Assembly1
    rna:AA:5~1531 1700~1701,1703~1704,1832,1837,
    1846,1848,1895,1912~1913,1915~
    1916,1919~1920,1947~1949,1959~
    1961
    rna:AV:1~76 1907~1909,1922~1923,2251~2253,
    2255,2450~2451,2585,2602
    rna:AW:1~76 1850~1852,1891~1893,2110,2112,
    2120,2169,2394~2395,2421~2422,
    2432
    rna:AY:1~77 1067,1913~1914
    rna:BB:1~119 861~864,915~919
    2820 4v5l:BB
    (3.1Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 21051640 Assembly1
    rna:BA:6~2897 78~81,97~98,100~101
    2821 4v5m:AA
    (7.8Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 21124459 Assembly1
    rna:AV:1~76 790,966,1338~1339
    rna:AX:11~21 926,1401,1505
    rna:BA:6~2897 702,1407~1409,1418,1429~1430,1
    442A,1475,1483~1484,1493~1496,
    1517
    2822 4v5m:AV
    (7.8Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    HB8
    300852    		 21124459 Assembly1
    rna:AA:5~1531 34,38~39,41~42
    rna:AX:11~21 34~37
    rna:BA:6~2897 19,56,75~76
    2823 4v5m:AX
    (7.8Å)
    		 11 N/A N/A N/A Thermus
    thermophilus
    HB8
    300852    		 21124459 Assembly1
    rna:AA:5~1531 12,14~16,18
    rna:AV:1~76 16~18
    2824 4v5m:BA
    (7.8Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E0F3 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 21124459 Assembly1
    rna:AA:5~1531 1689,1703~1704,1848,1912~1916,
    1919~1920,1947~1948,1959~1961,
    2864
    rna:AV:1~76 2169,2394~2395,2421~2422,2432
    rna:BB:1~119 861~863,915,917~919
    2825 4v5m:BB
    (7.8Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 21124459 Assembly1
    rna:BA:6~2897 78~81,97~98,100~101
    2826 4v5n:AA
    (7.6Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 21124459 Assembly1
    rna:AV:1~76 966,1338~1340
    rna:AX:11~21 926,1196,1505,1531
    rna:BA:6~2897 702,1407~1409,1418,1429~1430,1
    442A,1475,1483~1484,1493~1496,
    1517
    2827 4v5n:AV
    (7.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    HB8
    300852    		 21124459 Assembly1
    rna:AA:5~1531 30~32,34,41
    rna:AX:11~21 34~37
    rna:BA:6~2897 17A,19,56,71,75~76
    2828 4v5n:AX
    (7.6Å)
    		 11 N/A N/A N/A Thermus
    thermophilus
    HB8
    300852    		 21124459 Assembly1
    rna:AA:5~1531 12,17~18,21
    rna:AV:1~76 16~18
    2829 4v5n:BA
    (7.6Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E0F3 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 21124459 Assembly1
    rna:AA:5~1531 1689,1703~1704,1848,1912~1916,
    1919~1920,1947~1948,1959~1961,
    2864
    rna:AV:1~76 1851,1893,2112,2169,2180,2394~
    2395,2421~2422,2432
    rna:BB:1~119 861~863,915,917~919
    2830 4v5n:BB
    (7.6Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 21124459 Assembly1
    rna:BA:6~2897 78~81,97~98,100~101
    2831 4v5p:AA
    (3.1Å)
    		 1510 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly1
    rna:AV:1~76 790,966,1229,1338~1340,1400
    rna:AW:1~76 694,1340
    rna:AX:11~27 530,723,926,1196,1397~1398,140
    0~1401,1492~1493,1498,1503~150
    7,1531~1532,1534~1536
    rna:AY:1~77 530,1054,1493
    rna:BA:6~2897 702,784,899~900,1407~1409,1418
    ,1429,1473,1475,1483~1484,1494
    ~1496,1517
    2832 4v5p:AV
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly1
    rna:AA:5~1537 29~32,34,38~41
    rna:AX:11~27 34~37
    rna:BA:6~2897 3,11~13,24~25,74~76
    2833 4v5p:AW
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly1
    rna:AA:5~1537 35,38
    rna:AX:11~27 34~35
    rna:BA:6~2897 17,19~20,71~72,76
    2834 4v5p:AX
    (3.1Å)
    		 17 N/A N/A N/A Escherichia
    coli
    562    		 21378964 Assembly1
    rna:AA:5~1537 11~16,18~27
    rna:AV:1~76 19~21
    rna:AW:1~76 17~18
    rna:AY:1~77 22~24
    2835 4v5p:AY
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DD64 RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly1
    rna:AA:5~1537 34~37
    rna:AX:11~27 34~37
    rna:BA:6~2897 37~38,56
    2836 4v5p:BA
    (3.1Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E1F7 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly1
    rna:AA:5~1537 1689,1702~1704,1832,1836~1837,
    1846,1848,1895,1912~1913,1915~
    1916,1919~1920,1947~1948,1959~
    1961
    rna:AV:1~76 1907~1909,1922~1924,2063,2251~
    2253,2255,2439,2450~2451,2585,
    2602
    rna:AW:1~76 1851~1852,2110,2112,2169,2394~
    2395,2421~2422,2432
    rna:AY:1~77 1067,1913
    rna:BB:1~119 861~864,915,917~919,958
    2837 4v5p:BB
    (3.1Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly1
    rna:BA:6~2897 78~81,90~91,97~101
    2838 4v5p:CA
    (3.1Å)
    		 1510 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly2
    rna:CV:1~76 790,966,1229,1338~1340,1400
    rna:CW:1~76 694,1340
    rna:CX:11~27 530,723,926,1196,1397,1400~140
    1,1492~1493,1498,1503~1507,153
    1~1532,1534~1537
    rna:CY:1~77 530,1054,1493
    rna:DA:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1475,1483~1484
    ,1494~1496,1517
    2839 4v5p:CV
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly2
    rna:CA:5~1537 29~32,34,38~41
    rna:CX:11~27 34~37
    rna:DA:6~2897 11~13,24~25,74~76
    2840 4v5p:CW
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly2
    rna:CA:5~1537 35,38
    rna:CX:11~27 34~35
    rna:DA:6~2897 17,19~20,71~72,76
    2841 4v5p:CX
    (3.1Å)
    		 17 N/A N/A N/A Escherichia
    coli
    562    		 21378964 Assembly2
    rna:CA:5~1537 11~16,18~24,26~27
    rna:CV:1~76 19~21
    rna:CW:1~76 17~18
    rna:CY:1~77 22~23
    2842 4v5p:CY
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DD64 RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly2
    rna:CA:5~1537 34~37
    rna:CX:11~27 34~37
    rna:DA:6~2897 37~38,56
    2843 4v5p:DA
    (3.1Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E1F7 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly2
    rna:CA:5~1537 1689,1703~1704,1832,1836~1837,
    1846,1848,1895,1912~1913,1915~
    1916,1919~1920,1947~1948,1959~
    1961,2863~2864
    rna:CV:1~76 1907~1909,1922~1924,2251~2253,
    2255,2439,2450~2451,2585,2602
    rna:CW:1~76 1851~1852,2110,2112,2169,2394~
    2395,2421~2422,2432
    rna:CY:1~77 1067,1913
    rna:DB:1~119 861~864,915,917~919,958
    2844 4v5p:DB
    (3.1Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly2
    rna:DA:6~2897 78~81,90~91,97~101
    2845 4v5q:AA
    (3.1Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly1
    rna:AV:1~76 790,966,1229,1338~1340,1400
    rna:AW:1~76 693~694
    rna:AX:11~27 530,723,926~927,1397,1400~1401
    ,1492~1493,1498,1503~1507,1531
    rna:AY:1~77 530,1054,1493
    rna:BA:6~2897 702,784,899,1407~1409,1418,142
    9,1475,1483~1484,1494~1496,151
    7
    2846 4v5q:AV
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly1
    rna:AA:5~1531 29~32,34,38~41
    rna:AX:11~27 34~37
    rna:BA:6~2897 3,11~13,24~25,74~76
    2847 4v5q:AW
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly1
    rna:AA:5~1531 37~38
    rna:BA:6~2897 17,19~20,71,76
    2848 4v5q:AX
    (3.1Å)
    		 17 N/A N/A N/A Escherichia
    coli
    562    		 21378964 Assembly1
    rna:AA:5~1531 11,13,15~16,18~26
    rna:AV:1~76 19~21
    rna:AY:1~77 22~24
    2849 4v5q:AY
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E2EE RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly1
    rna:AA:5~1531 34~37
    rna:AX:11~27 34~37
    rna:BA:6~2897 25,37~38,56
    2850 4v5q:BA
    (3.1Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E1F7 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly1
    rna:AA:5~1531 1689,1703~1704,1832,1837,1846,
    1848,1895,1912~1913,1915~1916,
    1919~1920,1947~1948,1959~1961
    rna:AV:1~76 1907~1909,1922~1924,2251~2253,
    2255,2439,2450~2451,2585,2602
    rna:AW:1~76 1851~1852,1893,2112,2169,2180,
    2394~2395,2421~2422,2432
    rna:AY:1~77 1067,1913~1914
    rna:BB:1~119 861~863,915,917~919
    2851 4v5q:BB
    (3.1Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly1
    rna:BA:6~2897 78~81,97~98,100~101
    2852 4v5q:CA
    (3.1Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly2
    rna:CV:1~76 790,966,1229,1338~1340,1400
    rna:CW:1~76 693~694,1340
    rna:CX:11~27 926~927,1196,1397~1398,1400,14
    93,1498,1503,1531
    rna:CY:1~77 530,1054,1493
    rna:DA:6~2897 702,783~784,899,1407~1409,1418
    ,1429~1430,1442A,1474~1475,148
    3~1484,1494~1496,1517
    2853 4v5q:CV
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly2
    rna:CA:5~1531 30~32,34,38~41
    rna:CX:11~27 34~37
    rna:DA:6~2897 3,11~13,24~25,74~76
    2854 4v5q:CW
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly2
    rna:CA:5~1531 35,37~38
    rna:CX:11~27 34~35
    rna:DA:6~2897 17,19~20,72,76
    2855 4v5q:CX
    (3.1Å)
    		 17 N/A N/A N/A Escherichia
    coli
    562    		 21378964 Assembly2
    rna:CA:5~1531 13,15~16,19,21~23,25~27
    rna:CV:1~76 19~21
    rna:CW:1~76 17~18
    rna:CY:1~77 22~24
    2856 4v5q:CY
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E2EE RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly2
    rna:CA:5~1531 34~37
    rna:CX:11~27 34~37
    rna:DA:6~2897 25~26,37~38,56
    2857 4v5q:DA
    (3.1Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E1F7 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly2
    rna:CA:5~1531 1689,1701,1703~1704,1832,1836~
    1837,1846,1848,1912~1913,1915~
    1916,1919~1920,1947~1948,1959~
    1961,2864
    rna:CV:1~76 1907~1909,1922~1924,2251~2253,
    2255,2450~2451,2585,2602
    rna:CW:1~76 1851,2112,2169,2394~2395,2422,
    2432
    rna:CY:1~77 1067,1913~1914
    rna:DB:1~119 861~863,917~919
    2858 4v5q:DB
    (3.1Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly2
    rna:DA:6~2897 78~81,97~98,100~101
    2859 4v5r:AA
    (3.1Å)
    		 1510 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly1
    rna:AV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:AX:11~27 530,926~927,1196,1397,1400~140
    1,1492~1493,1498,1503,1505,153
    1~1532,1534~1536
    rna:AY:1~77 530~531,1054,1493
    rna:BA:6~2897 702,783~784,899,1407~1409,1418
    ,1429,1442A,1475,1483~1484,149
    4~1496,1517
    2860 4v5r:AV
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly1
    rna:AA:5~1537 29~32,34,38,40~41
    rna:AX:11~27 34~37
    rna:BA:6~2897 11~13,24~25,74~76
    2861 4v5r:AW
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly1
    rna:AX:11~27 34~35
    rna:BA:6~2897 17,19~20,71~72,76
    2862 4v5r:AX
    (3.1Å)
    		 17 N/A N/A N/A Escherichia
    coli
    K-12
    83333    		 21378964 Assembly1
    rna:AA:5~1537 11~16,18~27
    rna:AV:1~76 19~21
    rna:AW:1~76 17~18
    rna:AY:1~77 22~25
    2863 4v5r:AY
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DE5D RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly1
    rna:AA:5~1537 34~37
    rna:AX:11~27 34~37
    rna:BA:6~2897 25,37~38,56
    2864 4v5r:BA
    (3.1Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E1F7 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly1
    rna:AA:5~1537 1689,1703~1704,1832,1836~1837,
    1846,1848,1895,1912,1915~1916,
    1919~1920,1947~1948,1959~1961,
    2864
    rna:AV:1~76 1907~1909,1922~1924,2251~2253,
    2255,2450~2451,2585,2602
    rna:AW:1~76 1851,2110,2112,2169,2394~2395,
    2421~2422
    rna:AY:1~77 1067,1913~1914
    rna:BB:1~119 861~863,915,917~919,958
    2865 4v5r:BB
    (3.1Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly1
    rna:BA:6~2897 78~81,90~91,97~98,100~101
    2866 4v5r:CA
    (3.1Å)
    		 1510 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly2
    rna:CV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:CW:1~76 693,1340
    rna:CX:11~27 530,723,926,1397,1400~1401,149
    2~1493,1498,1503~1505,1531~153
    2,1534~1536
    rna:CY:1~77 530,1054,1493
    rna:DA:6~2897 702,784,899,1407~1409,1418,142
    9,1473,1475,1483~1484,1494~149
    6,1517
    2867 4v5r:CV
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly2
    rna:CA:5~1537 29~32,34,38~41
    rna:CX:11~27 34~37
    rna:DA:6~2897 11~13,24~25,74~76
    2868 4v5r:CW
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly2
    rna:CA:5~1537 35,37
    rna:CX:11~27 34~35
    rna:DA:6~2897 17,71~72,76
    2869 4v5r:CX
    (3.1Å)
    		 17 N/A N/A N/A Escherichia
    coli
    K-12
    83333    		 21378964 Assembly2
    rna:CA:5~1537 11~16,18~24,26
    rna:CV:1~76 19~21
    rna:CW:1~76 17~18
    rna:CY:1~77 22~25
    2870 4v5r:CY
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DE5D RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly2
    rna:CA:5~1537 34~37
    rna:CX:11~27 34~37
    rna:DA:6~2897 25,37~38,56
    2871 4v5r:DA
    (3.1Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E1F7 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly2
    rna:CA:5~1537 1689,1702~1704,1832,1836~1837,
    1846,1848,1912,1915~1916,1919~
    1920,1947~1948,1959~1961
    rna:CV:1~76 1907~1909,1922~1924,2251~2253,
    2450~2451,2585,2602
    rna:CW:1~76 1851,1893,2394,2422,2432
    rna:CY:1~77 1067,1913~1914
    rna:DB:1~119 861~863,915,917~919,958
    2872 4v5r:DB
    (3.1Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly2
    rna:DA:6~2897 78~81,90~91,97~98,100~101
    2873 4v5s:AA
    (3.1Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly1
    rna:AV:1~76 790,966,1229~1230,1338~1341,14
    00
    rna:AW:1~76 693~694
    rna:AX:11~27 530,723,926,1196,1397,1400~140
    1,1403,1492~1493,1498,1503~150
    7,1531
    rna:AY:1~77 530,1054,1493
    rna:BA:6~2897 702,783~784,899~900,1407~1409,
    1418,1429~1430,1442A,1475,1483
    ~1484,1494~1496,1517
    2874 4v5s:AV
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly1
    rna:AA:5~1531 29~32,34,38~41
    rna:AX:11~27 34~37
    rna:BA:6~2897 11~13,24~25,74~76
    2875 4v5s:AW
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly1
    rna:AA:5~1531 37~38
    rna:AX:11~27 34~35
    rna:BA:6~2897 17,19~20,71,76
    2876 4v5s:AX
    (3.1Å)
    		 17 N/A N/A N/A Escherichia
    coli
    K-12
    83333    		 21378964 Assembly1
    rna:AA:5~1531 11,13,15~16,18~27
    rna:AV:1~76 19~21
    rna:AW:1~76 17~18
    rna:AY:1~77 22~25
    2877 4v5s:AY
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E2EE RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly1
    rna:AA:5~1531 34~37
    rna:AX:11~27 34~36
    rna:BA:6~2897 37~38,56
    2878 4v5s:BA
    (3.1Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E1F7 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly1
    rna:AA:5~1531 1689,1703~1704,1832,1836~1837,
    1846,1848,1895,1912~1913,1915~
    1916,1919~1920,1947~1948,1959~
    1960,2864
    rna:AV:1~76 1907~1909,1922~1924,2251~2253,
    2439,2450~2451,2585,2602
    rna:AW:1~76 1851~1852,1893,2110,2112,2169,
    2394,2421~2422,2432
    rna:AY:1~77 1067,1913
    rna:BB:1~119 861~863,915,917~919,958
    2879 4v5s:BB
    (3.1Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly1
    rna:BA:6~2897 78~81,90~91,97~98,100~101
    2880 4v5s:CA
    (3.1Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly2
    rna:CV:1~76 790,966,1229,1338~1340,1400
    rna:CW:1~76 693,1340
    rna:CX:11~27 530,926,1196,1397,1400~1401,14
    92~1493,1498,1503,1505~1506
    rna:CY:1~77 530,1054,1493
    rna:DA:6~2897 702,783~784,899,1407~1409,1418
    ,1429,1442A,1474~1475,1483~148
    4,1494~1496,1517
    2881 4v5s:CV
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly2
    rna:CA:5~1531 29~32,34,38~41
    rna:CX:11~27 34~37
    rna:DA:6~2897 11~13,24~25,74~76
    2882 4v5s:CW
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly2
    rna:CA:5~1531 35,37
    rna:CX:11~27 34~35
    rna:DA:6~2897 17,19~20,71~72,76
    2883 4v5s:CX
    (3.1Å)
    		 17 N/A N/A N/A Escherichia
    coli
    K-12
    83333    		 21378964 Assembly2
    rna:CA:5~1531 16,18~27
    rna:CV:1~76 19~21
    rna:CW:1~76 17~18
    rna:CY:1~77 22~25
    2884 4v5s:CY
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E2EE RF00005 Escherichia
    coli
    K-12
    83333    		 21378964 Assembly2
    rna:CA:5~1531 34~37
    rna:CX:11~27 34~37
    rna:DA:6~2897 25,37~38,56
    2885 4v5s:DA
    (3.1Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E1F7 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly2
    rna:CA:5~1531 1689,1701,1703~1704,1832,1836~
    1837,1846,1848,1895,1912~1913,
    1915~1916,1919~1920,1947~1948,
    1959~1961,2863~2864
    rna:CV:1~76 1907~1909,1922~1924,2251~2253,
    2255,2450~2451,2585,2602
    rna:CW:1~76 1851,2110,2112,2169,2394~2395,
    2421~2422,2432
    rna:CY:1~77 1067,1913~1914
    rna:DB:1~119 861~863,917~919,958
    2886 4v5s:DB
    (3.1Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 21378964 Assembly2
    rna:DA:6~2897 78~81,90~91,97~98,100~101
    2887 4v5y:AA
    (4.45Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 17660832 Assembly1
    rna:BB:1~2903 702,784,791,899,1407~1410,1418
    ,1428~1430,1473~1475,1483~1484
    ,1493~1495,1517
    2888 4v5y:BA
    (4.45Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 17660832 Assembly1
    rna:BB:1~2903 41,78~81,89~90,97,99~101
    2889 4v5y:BB
    (4.45Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    562    		 17660832 Assembly1
    rna:AA:5~1534 1689,1700~1704,1832,1837,1846,
    1848,1912~1914,1916,1919~1920,
    1922,1947~1949,1959~1960
    rna:BA:2~118 861~864,915,917~919,958,2339~2
    340
    2890 4v5y:CA
    (4.45Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 17660832 Assembly2
    rna:DB:1~2903 702,783~784,899,1407~1409,1418
    ,1429,1473,1475,1483~1484,1493
    ~1496,1517
    2891 4v5y:DA
    (4.45Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 17660832 Assembly2
    rna:DB:1~2903 41,78~81,89~90,96~97,99~100
    2892 4v5y:DB
    (4.45Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    562    		 17660832 Assembly2
    rna:CA:5~1534 1689,1700,1702~1703,1832,1836~
    1837,1846,1848,1912~1916,1919~
    1920,1947~1948,1959~1961
    rna:DA:2~118 861~863,915,917~919,958,2340
    2893 4v61:AA
    (9.4Å)
    		 1478 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E242 RF00177
    RF01959
    RF01960    		 Spinacia
    oleracea
    3562    		 18042701 Assembly1
    rna:BA:1~2810 650,711,722,732~733,849,1357,1
    367~1368,1377~1378,1422~1425,1
    432~1433,1444
    2894 4v61:BA
    (9.4Å)
    		 2732 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E0E5 RF02540
    RF02541    		 Spinacia
    oleracea
    3562    		 18042701 Assembly1
    rna:AA:6~1483 728,1722~1726,1736~1738,1740,1
    778,1830,1842,1846~1847,1856~1
    858,1926,1933,1973~1975
    rna:BB:2~118 871~874,924~928,986~987,1056~1
    057
    rna:BC:1~103 1~8,1689~1690,1745~1746,1760~1
    762,2020~2021,2061~2062,2639~2
    640,2647~2650,2707~2710,2722~2
    723,2736~2739,2806~2809
    2895 4v61:BB
    (9.4Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E36A RF00001 Spinacia
    oleracea
    3562    		 18042701 Assembly1
    rna:BA:1~2810 78~81,88,90,100~102
    2896 4v61:BC
    (9.4Å)
    		 103 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000525FC8 RF02541 Spinacia
    oleracea
    3562    		 18042701 Assembly1
    rna:BA:1~2810 2~4,15~19,47~49,52~53,59~63,73
    ~75,93~102
    2897 4v63:AA
    (3.207Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E323 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB27
    262724    		 18596689 Assembly1
    rna:AZ:1~76 694~695
    rna:AV:12~23 530,926,1397,1400~1401,1492~14
    93,1498,1503,1505~1506
    rna:AY:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:BA:6~2897 702,783~784,899,1408~1409,1418
    ,1429~1430,1443,1473~1475,1483
    ~1484,1493,1495~1496,1517
    2898 4v63:AV
    (3.207Å)
    		 12 N/A N/A N/A N/A 18596689 Assembly1
    rna:AA:5~1531 12~13,15~23
    rna:AY:1~76 16~18
    2899 4v63:AY
    (3.207Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 18596689 Assembly1
    rna:AA:5~1531 30~32,34,38,40~41
    rna:AV:12~23 34~37
    rna:BA:6~2897 2~3,11~13,24~25,74~76
    2900 4v63:AZ
    (3.207Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 18596689 Assembly1
    rna:AV:12~23 34~35
    rna:BA:6~2897 19,56,71~72,76
    << < 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.