SEQ2FUN

FURNA
Download all results in tab-seperated text for 16611 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.
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    # PDB
    (Resolution)
    Length EC number
    & GO term
    RNAcentral Rfam Taxon PubMed ATtRACT
    motif
    Ligand &
    binding nucleotides
    201 1mji:D
    (2.5Å)

    34 N/A URS000080E085 N/A Escherichia
    coli

    562
    12515387 Assembly1
    rna:C:26~59 45~46
    202 1ml5:B
    (14.0Å)

    76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS000011107D RF00005 Escherichia
    coli

    562
    12511961 Assembly1
    rna:C:11~16 34~36
    rna:a:1~2902 25,75
    203 1ml5:a
    (14.0Å)

    2889 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080E1D6 RF02541 Escherichia
    coli

    562
    12511961 Assembly1
    rna:B:1~76 1923,2602
    204 1mme:A
    (3.1Å)

    16 N/A URS000080DF69 N/A synthetic
    construct

    32630
    7541315 Assembly1
    rna:B:114~15 25,23,22,21,30,40,50,60,70,80,
    90,101~104
    205 1mme:B
    (3.1Å)

    25 N/A URS000080E0D1 N/A synthetic
    construct

    32630
    7541315 Assembly1
    rna:A:25~104 114,113,112,111,120,130,140,15
    2~153,161,170,11~15
    206 1mme:C
    (3.1Å)

    16 N/A URS000080DF69 N/A synthetic
    construct

    32630
    7541315 Assembly2
    rna:D:114~15 25,23,22,21,30,40,50,60,70,80,
    90,101~104
    207 1mme:D
    (3.1Å)

    25 N/A URS000080E0D1 N/A synthetic
    construct

    32630
    7541315 Assembly2
    rna:C:25~104 114,113,112,111,120,130,140,15
    1~153,161,170,11~15
    208 1mwl:A
    (2.4Å)

    21 N/A URS000080E2C5 N/A synthetic
    construct

    32630
    12589761 Assembly1
    rna:B:24~44 2~15,18~22
    209 1mwl:B
    (2.4Å)

    21 N/A URS000080E2C5 N/A synthetic
    construct

    32630
    12589761 Assembly1
    rna:A:2~22 24~37,40~44
    210 1my9:A

    14 N/A URS000080E08F N/A synthetic
    construct

    32630
    12367521 Assembly1
    rna:B:15~28 1,3~4,10,12~13
    211 1my9:B

    14 N/A URS000080E08F N/A synthetic
    construct

    32630
    12367521 Assembly1
    rna:A:1~14 15,17~18,24,26~27
    212 1n32:A
    (3.0Å)

    1513 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080E226 RF00177 Thermus
    thermophilus

    274
    12464183 Assembly1
    rna:Y:28~42 530~531,1054,1493
    rna:Z:1~4 530,1397,1492~1493,1544
    213 1n32:Y
    (3.0Å)

    15 N/A URS000080DD28 N/A Thermus
    thermophilus

    274
    12464183 Assembly1
    rna:A:5~1544 34~37
    rna:Z:1~4 34~37
    214 1n33:A
    (3.35Å)

    1513 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080E226 RF00177 Thermus
    thermophilus

    274
    12464183 Assembly1
    rna:Y:30~40 530,1054,1493
    rna:Z:1~4 530,1492~1493,1544
    215 1n33:Y
    (3.35Å)

    11 N/A URS000080E2C2 N/A Thermus
    thermophilus

    274
    12464183 Assembly1
    rna:A:5~1544 34~37
    rna:Z:1~4 34~37
    216 1n34:A
    (3.8Å)

    1513 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080E226 RF00177 Thermus
    thermophilus

    274
    12464183 Assembly1
    rna:Z:1~4 530,1397,1493
    217 1n53:A

    16 N/A URS000080E0CF N/A synthetic
    construct

    32630
    12547201 Assembly1
    rna:B:17~25 1~5,7,9,13~16
    218 1n8r:A
    (3.0Å)

    2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DFCD RF02540 Haloarcula
    marismortui

    2238
    12860128 Assembly1
    rna:B:3001~3122 955~958,1011,1013~1015,1084,10
    99,1124,1130~1132
    219 1n8r:B
    (3.0Å)

    122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00003592C7 RF00001 Haloarcula
    marismortui

    2238
    12860128 Assembly1
    rna:A:10~2914 3080~3083,3087,3091,3100~3105
    220 1nji:A
    (3.0Å)

    2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DFCD RF02540 Haloarcula
    marismortui

    2238
    12860128 Assembly1
    rna:B:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    221 1nji:B
    (3.0Å)

    122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00003592C7 RF00001 Haloarcula
    marismortui

    2238
    12860128 Assembly1
    rna:A:10~2914 3080~3083,3087,3091,3100~3105
    222 1njm:0
    (3.6Å)

    2766 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DEF1 RF02541 Deinococcus
    radiodurans

    1299
    12535524 Assembly1
    rna:5:1~35 1893,1925~1926,2430~2431,2472,
    2485~2486,2532~2533,2552,2562~
    2564
    223 1njm:5
    (3.6Å)

    25 N/A URS000080E1F9 N/A synthetic
    construct

    32630
    12535524 Assembly1
    rna:0:1~2877 21,29~35
    224 1njo:0
    (3.7Å)

    2766 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DEF1 RF02541 Deinococcus
    radiodurans

    1299
    12535524 Assembly1
    rna:5:32~35 2430~2431,2485~2486,2532,2534,
    2552,2562,2564,2583
    225 1njp:0
    (3.5Å)

    2766 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DEF1 RF02541 Deinococcus
    radiodurans

    1299
    12535524 Assembly1
    rna:5:1~35 1893~1894,1899,1925~1926,2430~
    2431,2483,2485~2486,2532,2534,
    2552,2562,2564,2581
    226 1njp:5
    (3.5Å)

    25 N/A URS000080E1F9 N/A synthetic
    construct

    32630
    12535524 Assembly1
    rna:0:1~2877 5,21~22,29~30,32~35
    227 1nkw:0
    (3.1Å)

    2766 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DEF1 RF02541 Deinococcus
    radiodurans

    1299
    11733066 Assembly1
    rna:9:4~121 874~877,928~931,969,2298
    228 1nkw:9
    (3.1Å)

    118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000420396 RF00001 Deinococcus
    radiodurans

    1299
    11733066 Assembly1
    rna:0:1~2877 15,80~83,92,100~103
    229 1nlc:A
    (1.85Å)

    23 N/A URS000080E21C N/A synthetic
    construct

    32630
    12736317 Assembly1
    rna:B:1~23 1~7,9~23
    230 1nlc:B
    (1.85Å)

    23 N/A URS000080E21C N/A synthetic
    construct

    32630
    12736317 Assembly1
    rna:A:1~23 1~7,9~23
    231 1nta:A
    (2.9Å)

    22 N/A URS000080DE50 N/A synthetic
    construct

    32630
    12618190 Assembly1
    rna:B:101~118 2~7,10~15,17~22
    232 1nta:B
    (2.9Å)

    18 N/A URS000080DFEE N/A synthetic
    construct

    32630
    12618190 Assembly1
    rna:A:1~22 102~105,107~118
    233 1ntb:A
    (2.9Å)

    22 N/A URS000080DE50 N/A synthetic
    construct

    32630
    12618190 Assembly1
    rna:B:101~118 2~7,10~15,17~22
    234 1ntb:B
    (2.9Å)

    18 N/A URS000080DFEE N/A synthetic
    construct

    32630
    12618190 Assembly1
    rna:A:1~22 102~118
    235 1nuj:A
    (1.8Å)

    13 N/A URS000080DF09 N/A synthetic
    construct

    32630
    12911297 Assembly1
    rna:B:39~49 19~23,27~30
    236 1nuj:B
    (1.8Å)

    11 N/A URS000080E1D3 N/A synthetic
    construct

    32630
    12911297 Assembly1
    rna:A:18~30 40~49
    237 1nuj:C
    (1.8Å)

    13 N/A URS000080DF09 N/A synthetic
    construct

    32630
    12911297 Assembly2
    rna:D:39~49 19~23,27~30
    238 1nuj:D
    (1.8Å)

    11 N/A URS000080E1D3 N/A synthetic
    construct

    32630
    12911297 Assembly2
    rna:C:18~30 40~49
    239 1nuj:E
    (1.8Å)

    13 N/A URS000080DF09 N/A synthetic
    construct

    32630
    12911297 Assembly3
    rna:F:39~49 19~23,27~30
    240 1nuj:F
    (1.8Å)

    11 N/A URS000080E1D3 N/A synthetic
    construct

    32630
    12911297 Assembly3
    rna:E:18~30 40~49
    241 1nuj:G
    (1.8Å)

    13 N/A URS000080DF09 N/A synthetic
    construct

    32630
    12911297 Assembly4
    rna:H:39~49 19~23,27~30
    242 1nuj:H
    (1.8Å)

    11 N/A URS000080E1D3 N/A synthetic
    construct

    32630
    12911297 Assembly4
    rna:G:18~30 40~49
    243 1nuv:A
    (1.81Å)

    13 N/A URS000080DF09 N/A synthetic
    construct

    32630
    12911297 Assembly1
    rna:B:39~49 19~23,27~30
    244 1nuv:B
    (1.81Å)

    11 N/A URS000080E1D3 N/A synthetic
    construct

    32630
    12911297 Assembly1
    rna:A:18~30 40~49
    245 1nuv:C
    (1.81Å)

    13 N/A URS000080DF09 N/A synthetic
    construct

    32630
    12911297 Assembly2
    rna:D:39~49 19~23,27~30
    246 1nuv:D
    (1.81Å)

    11 N/A URS000080E1D3 N/A synthetic
    construct

    32630
    12911297 Assembly2
    rna:C:18~30 40~49
    247 1nuv:E
    (1.81Å)

    13 N/A URS000080DF09 N/A synthetic
    construct

    32630
    12911297 Assembly3
    rna:F:39~49 19~23,27~30
    248 1nuv:F
    (1.81Å)

    11 N/A URS000080E1D3 N/A synthetic
    construct

    32630
    12911297 Assembly3
    rna:E:18~30 40~49
    249 1nuv:G
    (1.81Å)

    13 N/A URS000080DF09 N/A synthetic
    construct

    32630
    12911297 Assembly4
    rna:H:39~49 19~23,27~30
    250 1nuv:H
    (1.81Å)

    11 N/A URS000080E1D3 N/A synthetic
    construct

    32630
    12911297 Assembly4
    rna:G:18~30 40~49
    251 1nwx:0
    (3.5Å)

    2766 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DEF1 RF02541 Deinococcus
    radiodurans

    1299
    12623020 Assembly1
    rna:9:4~121 874~877,928~931,969,2298
    252 1nwx:9
    (3.5Å)

    118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000420396 RF00001 Deinococcus
    radiodurans

    1299
    12623020 Assembly1
    rna:0:1~2877 15,80~83,92,100~103
    253 1nwy:0
    (3.3Å)

    2766 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DEF1 RF02541 Deinococcus
    radiodurans

    1299
    12623020 Assembly1
    rna:9:4~121 874~877,928~931,969,2298
    254 1nwy:9
    (3.3Å)

    118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000420396 RF00001 Deinococcus
    radiodurans

    1299
    12623020 Assembly1
    rna:0:1~2877 15,80~83,92,100~103
    255 1nyi:A
    (2.85Å)

    16 N/A URS000080DF69 N/A synthetic
    construct

    32630
    12948485 Assembly1
    rna:B:102~125 11~26
    256 1nyi:B
    (2.85Å)

    24 N/A URS000080DF29 N/A synthetic
    construct

    32630
    12948485 Assembly1
    rna:A:11~26 102~110,119~125
    257 1o3z:A
    (2.65Å)

    23 N/A URS000080E21C N/A synthetic
    construct

    32630
    12736317 Assembly1
    rna:B:1~23 1~7,9~23
    258 1o3z:B
    (2.65Å)

    23 N/A URS000080E21C N/A synthetic
    construct

    32630
    12736317 Assembly1
    rna:A:1~23 1~7,9~23
    259 1o9m:A
    (2.4Å)

    21 N/A URS000080E2C5 N/A Escherichia
    coli

    562
    12643685 Assembly1
    rna:B:1403 1403~1405,1407~1412,1488~1491,
    1493~1498
    260 1o9m:B
    (2.4Å)

    21 N/A URS000080E2C5 N/A Escherichia
    coli

    562
    12643685 Assembly1
    rna:A:1403~1498 1403~1412,1488~1491,1494,1496~
    1498
    261 1ob5:B
    (3.1Å)

    77 GO:0030533 (F) triplet codon-amino aci... URS000080E06E RF00005 Saccharomyces
    cerevisiae

    4932
    16257965 Assembly1
    rna:D:1~77A 34~37
    rna:F:1~77A 20,47,57~59
    262 1ob5:D
    (3.1Å)

    77 GO:0030533 (F) triplet codon-amino aci... URS000080E06E RF00005 Saccharomyces
    cerevisiae

    4932
    16257965 Assembly1
    rna:B:1~77A 20,47,57~59
    rna:F:1~77A 34~37
    263 1ob5:F
    (3.1Å)

    77 GO:0030533 (F) triplet codon-amino aci... URS000080E06E RF00005 Saccharomyces
    cerevisiae

    4932
    16257965 Assembly1
    rna:B:1~77A 34~37
    rna:D:1~77A 20,47,57~59
    264 1oo7:A

    10 N/A URS000080E30E N/A synthetic
    construct

    32630
    12736318 Assembly1
    rna:B:1~10 1~10
    265 1q29:A
    (3.0Å)

    17 N/A URS000080E114 N/A synthetic
    construct

    32630
    12948485 Assembly1
    rna:B:102~125 10~11,13~15,18~25
    266 1q29:B
    (3.0Å)

    24 N/A URS000080DF29 N/A synthetic
    construct

    32630
    12948485 Assembly1
    rna:A:10~26 102~110,119~125
    267 1q7y:A
    (3.2Å)

    2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DFCD RF02540 Haloarcula
    marismortui

    2238
    12185246 Assembly1
    rna:B:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132

    rna:5:74~76 2105,2284~2286,2485~2486,2636~
    2637
    268 1q7y:B
    (3.2Å)

    122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00003592C7 RF00001 Haloarcula
    marismortui

    2238
    12185246 Assembly1
    rna:A:10~2914 3080~3083,3087,3091,3100~3105
    269 1q81:A
    (2.95Å)

    2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DFCD RF02540 Haloarcula
    marismortui

    2238
    12185246 Assembly1
    rna:B:3001~3122 955~958,1011,1013~1015,1084,10
    99,1124,1130~1132

    rna:5:74~75 2542,2588~2590
    270 1q81:B
    (2.95Å)

    122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00003592C7 RF00001 Haloarcula
    marismortui

    2238
    12185246 Assembly1
    rna:A:10~2914 3080~3083,3087,3091,3100~3105
    271 1q82:A
    (2.98Å)

    2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DFCD RF02540 Haloarcula
    marismortui

    2238
    12185246 Assembly1
    rna:B:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132

    rna:5:74~75 2542,2588~2590
    272 1q82:B
    (2.98Å)

    122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00003592C7 RF00001 Haloarcula
    marismortui

    2238
    12185246 Assembly1
    rna:A:10~2914 3080~3083,3087,3091,3100~3101,
    3103~3105
    273 1q86:A
    (3.0Å)

    2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DFCD RF02540 Haloarcula
    marismortui

    2238
    12185246 Assembly1
    rna:B:3001~3122 955~958,1011,1013~1015,1084,10
    99,1124,1130~1132

    rna:5:74~76 2541~2542,2588~2590,2618~2620,
    2637

    rna:6:74~76 2104,2284~2286,2485~2486,2637
    274 1q86:B
    (3.0Å)

    122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00003592C7 RF00001 Haloarcula
    marismortui

    2238
    12185246 Assembly1
    rna:A:10~2914 3080~3083,3087,3091,3100~3101,
    3103~3105
    275 1qbp:A
    (2.1Å)

    15 N/A URS000080DD59 N/A synthetic
    construct

    32630
    10504226 Assembly1
    rna:B:16~30 2~8,10~15
    276 1qbp:B
    (2.1Å)

    15 N/A URS000080DD59 N/A synthetic
    construct

    32630
    10504226 Assembly1
    rna:A:1~15 17~23,25~30
    277 1qbp:C
    (2.1Å)

    15 N/A URS000080DD59 N/A synthetic
    construct

    32630
    10504226 Assembly2
    rna:D:46~60 32~38,40~45
    278 1qbp:D
    (2.1Å)

    15 N/A URS000080DD59 N/A synthetic
    construct

    32630
    10504226 Assembly2
    rna:C:31~45 47~53,55~60
    279 1qbp:E
    (2.1Å)

    15 N/A URS000080DD59 N/A synthetic
    construct

    32630
    10504226 Assembly3
    rna:F:76~90 62~68,70~75
    280 1qbp:F
    (2.1Å)

    15 N/A URS000080DD59 N/A synthetic
    construct

    32630
    10504226 Assembly3
    rna:E:61~75 77~90
    281 1qc0:B
    (1.55Å)

    10 N/A URS000080E289 N/A Escherichia
    coli

    562
    10555960 Assembly1
    rna:A:11~19 20~28
    282 1qc0:C
    (1.55Å)

    19 N/A URS000080DE9E N/A Escherichia
    coli

    562
    10555960 Assembly2
    rna:D:120~138 101~119
    283 1qc0:D
    (1.55Å)

    19 N/A URS000080DFF8 N/A Escherichia
    coli

    562
    10555960 Assembly2
    rna:C:101~119 120~138
    284 1qcu:A
    (1.2Å)

    11 N/A URS000080E243 N/A synthetic
    construct

    32630
    10555960 Assembly1
    rna:B:12~22 1~11
    285 1qcu:B
    (1.2Å)

    11 N/A URS000080DF74 N/A synthetic
    construct

    32630
    10555960 Assembly1
    rna:A:1~11 12~22
    286 1qcu:C
    (1.2Å)

    11 N/A URS000080DF74 N/A synthetic
    construct

    32630
    10555960 Assembly2
    rna:D:112~122 101~111
    287 1qcu:D
    (1.2Å)

    11 N/A URS000080E243 N/A synthetic
    construct

    32630
    10555960 Assembly2
    rna:C:101~111 112~122
    288 1qvf:0
    (3.1Å)

    2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DFCD RF02540 Haloarcula
    marismortui

    2238
    14561884 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132

    rna:3:1~76 2431,2459~2460
    289 1qvf:9
    (3.1Å)

    122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00003592C7 RF00001 Haloarcula
    marismortui

    2238
    14561884 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3101,
    3103~3105
    290 1qvg:0
    (2.9Å)

    2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DFCD RF02540 Haloarcula
    marismortui

    2238
    14561884 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132

    rna:3:74~76 2431,2459~2460
    rna:4:74~76 2104,2284~2286,2485~2486,2637
    rna:5:74~76 2541~2542,2588~2590,2618~2619,
    2637
    291 1qvg:9
    (2.9Å)

    122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00003592C7 RF00001 Haloarcula
    marismortui

    2238
    14561884 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3101,
    3103~3105
    292 1r3e:D
    (2.1Å)

    17 N/A URS000080DFF6 N/A synthetic
    construct

    32630
    14566049 Assembly1
    rna:E:404~420 404~408,412~420
    293 1r3e:E
    (2.1Å)

    17 N/A URS000080DFF6 N/A synthetic
    construct

    32630
    14566049 Assembly1
    rna:D:404~420 404~408,412~420
    294 1r9f:B
    (1.85Å)

    20 N/A URS000041F71C N/A synthetic
    construct

    32630
    14661029 Assembly1
    rna:C:1~20 1~19
    rna:B-2:1~20 1~4,6~13,17~19
    rna:C-2:1~20 1~20
    295 1r9f:C
    (1.85Å)

    20 N/A URS0000485571 N/A synthetic
    construct

    32630
    14661029 Assembly1
    rna:B:1~20 1~19
    rna:B-2:1~20 1~20
    rna:C-2:1~20 1~8,12~19
    296 1rc7:B
    (2.15Å)

    10 N/A URS000080E216 N/A synthetic
    construct

    32630
    15016361 Assembly1
    rna:C:11~20 1~10
    297 1rc7:C
    (2.15Å)

    10 N/A URS000080E216 N/A synthetic
    construct

    32630
    15016361 Assembly1
    rna:B:1~10 11~20
    298 1rc7:D
    (2.15Å)

    10 N/A URS000080E216 N/A synthetic
    construct

    32630
    15016361 Assembly1
    rna:E:31~40 21~30
    299 1rc7:E
    (2.15Å)

    10 N/A URS000080E216 N/A synthetic
    construct

    32630
    15016361 Assembly1
    rna:D:21~30 31~40
    300 1rna:A
    (2.25Å)

    14 N/A URS000080E07D N/A synthetic
    construct

    32630
    2479753 Assembly1
    rna:B:15~28 1~14
    << < 1 2 3 4 5 6 7 8 9 10 11 12 13 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.