SEQ2FUN

FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    2901 4v63:BA
    (3.207Å)
    		 2879 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DF36 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB27
    262724    		 18596689 Assembly1
    rna:AA:5~1531 1689,1701~1704,1836~1837,1846,
    1848,1912~1913,1916,1919~1920,
    1948,1959~1961,2863
    rna:AZ:1~76 1851~1852,2112,2169,2394~2395,
    2421~2422,2432
    rna:AY:1~76 1907~1909,1922~1924,2063~2064,
    2251~2253,2255,2439,2450~2451,
    2602
    rna:BB:1~118 861~863,916~920,958
    2902 4v63:BB
    (3.207Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E212 RF00001 Thermus
    thermophilus
    HB27
    262724    		 18596689 Assembly1
    rna:BA:6~2897 78~81,89B,97,99~100
    2903 4v63:CA
    (3.207Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E323 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB27
    262724    		 18596689 Assembly2
    rna:CZ:1~76 694~695
    rna:CV:12~23 530,926,1397,1400~1401,1492~14
    93,1498,1503,1505~1506
    rna:CY:1~76 790,1229~1230,1338~1340,1400
    rna:DA:6~2897 702,783~784,899,1407~1409,1418
    ,1429~1430,1473~1474,1483~1484
    ,1493~1496,1517
    2904 4v63:CV
    (3.207Å)
    		 12 N/A N/A N/A N/A 18596689 Assembly2
    rna:CA:5~1531 12~23
    rna:CY:1~76 16~18
    2905 4v63:CY
    (3.207Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 18596689 Assembly2
    rna:CA:5~1531 30~32,34,38~41
    rna:CV:12~23 34~37
    rna:DA:6~2897 2~3,11~13,24~25,74~76
    2906 4v63:CZ
    (3.207Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 18596689 Assembly2
    rna:CV:12~23 34~35
    rna:DA:6~2897 17A,19,56,71~72,76
    2907 4v63:DA
    (3.207Å)
    		 2879 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DF36 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB27
    262724    		 18596689 Assembly2
    rna:CA:5~1531 1701~1704,1836~1837,1848,1912~
    1916,1919~1920,1947~1948,1959~
    1961
    rna:CZ:1~76 1851~1852,2112,2169,2180,2394~
    2395,2421~2422,2432
    rna:CY:1~76 1907~1909,1922~1924,2063~2064,
    2251~2253,2255~2256,2439,2450~
    2451,2601~2602
    rna:DB:1~118 861~863,916~920,958
    2908 4v63:DB
    (3.207Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E212 RF00001 Thermus
    thermophilus
    HB27
    262724    		 18596689 Assembly2
    rna:DA:6~2897 78~81,89B,97,99~100
    2909 4v64:AA
    (3.5Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 18567815 Assembly1
    rna:BB:1~2903 702,784,899,1407~1409,1418,142
    8~1430,1473~1475,1483~1484,149
    2,1494~1495,1517
    2910 4v64:BA
    (3.5Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 18567815 Assembly1
    rna:BB:1~2903 78~81,89~90,96~97,99~100
    2911 4v64:BB
    (3.5Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    562    		 18567815 Assembly1
    rna:AA:5~1534 1686,1689,1700~1704,1832,1837,
    1846,1848,1895,1912~1916,1919~
    1920,1947~1949,1959~1960
    rna:BA:2~118 861~863,915,917~919,958
    2912 4v64:CA
    (3.5Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 18567815 Assembly2
    rna:DB:1~2903 702,784,899,1407~1409,1418~141
    9,1428~1430,1473~1475,1483~148
    4,1492,1494~1496,1517
    2913 4v64:DA
    (3.5Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 18567815 Assembly2
    rna:DB:1~2903 78~81,89~90,96~97,99~100
    2914 4v64:DB
    (3.5Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    562    		 18567815 Assembly2
    rna:CA:5~1534 1687,1689,1700~1704,1832,1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1949,1959~1961
    rna:DA:2~118 861~863,915,917~919,958
    2915 4v65:A1
    (9.0Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E24C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 N/A Assembly1
    rna:AA:1~75 965,1493
    rna:AP:1~75 790,944,966,1230,1338~1341
    rna:AE:1~76 694,937,1339~1340
    rna:AM:1~20 795,926,1054~1056,1196,1397,14
    00,1402,1492~1493,1498,1503,15
    05~1507,1530,1534
    rna:BB:1~2903 702,770,784,1407~1410,1418~142
    0,1427~1430,1472~1475,1481,148
    3~1485,1492,1494~1496,1516
    2916 4v65:AA
    (9.0Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Escherichia
    coli
    562    		 N/A Assembly1
    rna:AM:1~20 34~37
    rna:A1:5~1534 33,37
    rna:BB:1~2903 55~56
    2917 4v65:AE
    (9.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Escherichia
    coli
    562    		 N/A Assembly1
    rna:AP:1~75 34~36
    rna:A1:5~1534 33,35~38
    rna:BB:1~2903 71~73,75~76
    2918 4v65:AM
    (9.0Å)
    		 20 N/A N/A N/A Escherichia
    coli
    562    		 N/A Assembly1
    rna:AA:1~75 10~13
    rna:AP:1~75 6~9
    rna:A1:5~1534 1~16
    2919 4v65:AP
    (9.0Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Escherichia
    coli
    562    		 N/A Assembly1
    rna:AE:1~76 31~32,38~40
    rna:AM:1~20 34~38
    rna:A1:5~1534 29~31,34,37~41
    rna:BB:1~2903 12,24,54,73~75
    2920 4v65:BA
    (9.0Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DF7E RF00001 Escherichia
    coli
    562    		 N/A Assembly1
    rna:BB:1~2903 41,78~81,88,99~100
    2921 4v65:BB
    (9.0Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 N/A Assembly1
    rna:AA:1~75 1066~1067
    rna:AP:1~75 1908,1922~1924,2253~2255,2326
    rna:AE:1~76 1852~1853,1884,2396~2398,2420~
    2421
    rna:A1:5~1534 1687~1690,1701~1703,1765,1832~
    1833,1836,1848~1849,1899,1912~
    1914,1916~1917,1919~1921,1935,
    1947,1958~1962
    rna:BA:2~118 861~864,917~919,1028~1029,2340
    ~2341
    2922 4v66:A1
    (9.0Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E24C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 N/A Assembly1
    rna:AA:1~75 963,965,1493
    rna:AP:1~75 790,944,966,1230,1338~1341
    rna:AE:1~76 694,937,1339~1340,1383
    rna:AM:1~20 795,926,1054~1056,1196,1397,14
    00~1402,1493~1494,1498~1499,15
    03~1507,1528,1530,1534
    rna:BB:1~2903 699,702,770,783~784,1407~1408,
    1410,1417~1420,1427~1430,1441,
    1472~1475,1481~1485,1492,1494~
    1496,1515~1516
    2923 4v66:AA
    (9.0Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Escherichia
    coli
    562    		 N/A Assembly1
    rna:AM:1~20 34~37
    rna:A1:5~1534 32~33,37
    rna:BB:1~2903 52,71~72,75
    2924 4v66:AE
    (9.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Escherichia
    coli
    562    		 N/A Assembly1
    rna:AP:1~75 34~36
    rna:A1:5~1534 30,33~37
    rna:BB:1~2903 71~73,75~76
    2925 4v66:AM
    (9.0Å)
    		 20 N/A N/A N/A Escherichia
    coli
    562    		 N/A Assembly1
    rna:AA:1~75 10~13
    rna:AP:1~75 6~9
    rna:A1:5~1534 1~5,7~16
    2926 4v66:AP
    (9.0Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Escherichia
    coli
    562    		 N/A Assembly1
    rna:AE:1~76 31~32,38~40
    rna:AM:1~20 34~38
    rna:A1:5~1534 29~31,34,37~42
    rna:BB:1~2903 11~12,24,54,73~75
    2927 4v66:BA
    (9.0Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DF7E RF00001 Escherichia
    coli
    562    		 N/A Assembly1
    rna:BB:1~2903 41,78~81,88,99~100
    2928 4v66:BB
    (9.0Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 N/A Assembly1
    rna:AA:1~75 1942~1943,2471,2604
    rna:AP:1~75 1908,1923~1924,2253~2255,2326
    rna:AE:1~76 1851~1852,1884,2396~2398,2420~
    2421
    rna:A1:5~1534 1686~1690,1701~1703,1750,1765,
    1832~1833,1836~1837,1848~1849,
    1899,1912~1913,1916~1917,1919~
    1921,1935,1946~1947,1959~1962
    rna:BA:2~118 862~864,917,919,1028~1029,2340
    2929 4v67:AA
    (3.0Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E323 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 19064930 Assembly1
    rna:AV:15~24 530,926,1196,1397,1400~1401,14
    92~1493,1498
    rna:AY:1~76 790,966,1229,1338~1340,1400
    rna:BA:6~2897 702,783~784,899,1407~1409,1418
    ,1429~1430,1443,1473~1475,1483
    ~1484,1493~1496,1517
    2930 4v67:AV
    (3.0Å)
    		 10 N/A N/A N/A Thermus
    thermophilus
    HB27
    262724    		 19064930 Assembly1
    rna:AA:5~1531 16~23
    rna:AY:1~76 16~18
    2931 4v67:AY
    (3.0Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 19064930 Assembly1
    rna:AA:5~1531 30~32,34,38~41
    rna:AV:15~24 34~37
    rna:BA:6~2897 2~3,11~13,24~25,74~76
    2932 4v67:AZ
    (3.0Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 19064930 Assembly1
    rna:BA:6~2897 3,19,56,71,76
    2933 4v67:BA
    (3.0Å)
    		 2879 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DF36 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    274    		 19064930 Assembly1
    rna:AA:5~1531 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1948,1959~1961,
    2863~2864
    rna:AZ:1~76 1851~1852,1885,2112,2169,2394~
    2395,2421~2422
    rna:AY:1~76 1907~1909,1922~1924,2063~2064,
    2251~2253,2255,2450~2451,2601~
    2602
    rna:BB:1~118 861~864,915,917~919
    2934 4v67:BB
    (3.0Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E212 RF00001 Thermus
    thermophilus
    274    		 19064930 Assembly1
    rna:BA:6~2897 78~81,96~97,99~100
    2935 4v67:CA
    (3.0Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E323 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 19064930 Assembly2
    rna:CV:15~24 530,926,1196,1397,1400~1402,14
    92~1493,1498
    rna:CY:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:DA:6~2897 702,783~784,899,1407~1409,1418
    ,1429,1473,1483~1485,1493~1496
    ,1517
    2936 4v67:CV
    (3.0Å)
    		 10 N/A N/A N/A Thermus
    thermophilus
    HB27
    262724    		 19064930 Assembly2
    rna:CA:5~1531 16~23
    rna:CY:1~76 16~18
    2937 4v67:CY
    (3.0Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 19064930 Assembly2
    rna:CA:5~1531 30~32,34,38~41
    rna:CV:15~24 34~37
    rna:DA:6~2897 2~3,11~13,24~25,74~76
    2938 4v67:CZ
    (3.0Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 19064930 Assembly2
    rna:DA:6~2897 3,17A,19,56,71,76
    2939 4v67:DA
    (3.0Å)
    		 2879 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DF36 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    274    		 19064930 Assembly2
    rna:CA:5~1531 1702~1704,1832,1836~1837,1846,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1949,1959~1961
    rna:CZ:1~76 1851~1852,1885,2112,2169,2180,
    2394~2395,2421~2422
    rna:CY:1~76 1907~1909,1922~1924,2063~2064,
    2251~2253,2255,2450~2451,2602
    rna:DB:1~118 861~864,915,917~919
    2940 4v67:DB
    (3.0Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E212 RF00001 Thermus
    thermophilus
    274    		 19064930 Assembly2
    rna:DA:6~2897 78~81,96~97,99~100
    2941 4v68:AA
    (6.4Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E260 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 19229291 Assembly1
    rna:AV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:AX:12~18 926,928,1400~1401,1403,1498,15
    03
    rna:AY:1~76 530,1054,1492~1493
    rna:A0:100~102 530,1492~1493
    rna:BA:6~2897 702,783~784,899~900,1407~1408,
    1418,1429~1430,1442A,1473~1475
    ,1483~1485,1494~1496,1517
    2942 4v68:AV
    (6.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    274    		 19229291 Assembly1
    rna:AA:5~1531 29~31,34,39~41
    rna:AX:12~18 34~37
    rna:BA:6~2897 11~13,24~25,74~76
    2943 4v68:AW
    (6.4Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Thermus
    thermophilus
    274    		 19229291 Assembly1
    rna:BA:6~2897 17,56,71~72,76
    2944 4v68:AY
    (6.4Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DE32 RF00005 Thermus
    thermophilus
    274    		 19229291 Assembly1
    rna:AA:5~1531 34,36~37
    rna:A0:100~102 34~37
    rna:BA:6~2897 38,55~56
    2945 4v68:BA
    (6.4Å)
    		 2852 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E13F RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    274    		 19229291 Assembly1
    rna:AA:5~1531 1689,1700~1704,1832,1836~1837,
    1846,1848,1912,1916,1919~1920,
    1947~1948,1959~1961,2863~2864
    rna:AV:1~76 1907~1909,1922~1924,2251,2253,
    2450~2451,2601~2602
    rna:AW:1~76 1851~1852,2168,2180~2181,2394,
    2422,2432
    rna:AY:1~76 1066~1068,1913
    rna:BB:1~119 861~864,915,917~919,1026
    2946 4v68:BB
    (6.4Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE2B RF00001 Thermus
    thermophilus
    274    		 19229291 Assembly1
    rna:BA:6~2897 78~81,88,97~98,100~101
    2947 4v69:AA
    (6.7Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E24C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 19122150 Assembly1
    rna:AY:1~76 530,1053~1054,1493
    rna:AW:1~76 789,1339~1340
    rna:AX:12~22 693,926,1196,1397,1400~1401,14
    03,1493,1498,1505~1506
    rna:AV:1~76 790,966,1229~1230,1338~1339,14
    00
    rna:BB:1~2903 702,784,1407~1410,1418,1429,14
    73,1475,1483~1484,1492~1495,15
    17
    2948 4v69:AV
    (6.7Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 19122150 Assembly1
    rna:AA:5~1534 30,34,38~39,41~42
    rna:AW:1~76 40~41
    rna:AX:12~22 34~37
    rna:BB:1~2903 12~13,25,74~76
    2949 4v69:AW
    (6.7Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 19122150 Assembly1
    rna:AA:5~1534 33~35
    rna:BB:1~2903 17~20,56~57,71,76
    2950 4v69:AX
    (6.7Å)
    		 11 N/A N/A N/A synthetic
    construct
    32630    		 19122150 Assembly1
    rna:AA:5~1534 14~20,22
    rna:AY:1~76 19~21
    rna:AV:1~76 16~18
    2951 4v69:AY
    (6.7Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Escherichia
    coli
    562    		 19122150 Assembly1
    rna:AA:5~1534 34~37
    rna:AX:12~22 34~37
    rna:BB:1~2903 25,56
    2952 4v69:BA
    (6.7Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DF7E RF00001 Escherichia
    coli
    562    		 19122150 Assembly1
    rna:BB:1~2903 41,78~81,88~89,96~97,99~100
    2953 4v69:BB
    (6.7Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 19122150 Assembly1
    rna:AA:5~1534 1689,1702~1704,1832,1837,1846,
    1848,1912~1916,1919~1920,1947~
    1948,1959~1961
    rna:AY:1~76 1067,1914
    rna:AW:1~76 1851~1852,2110~2115,2117,2169,
    2180,2394~2395,2421~2422
    rna:AV:1~76 1908~1909,1922~1924,2063,2251~
    2252,2254,2450~2451,2585,2602
    rna:BA:2~118 861~863,915~919,958~959,2340
    2954 4v6a:AA
    (3.1Å)
    		 1495 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DD29 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 19696344 Assembly1
    rna:AW:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:AX:1~5 926,1400,1402~1403,1498,1505~1
    506
    rna:BA:6~2891 702,784,899~900,1407~1409,1418
    ,1429,1442A,1473~1475,1483~148
    4,1494~1495,1517
    2955 4v6a:AW
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 19696344 Assembly1
    rna:AA:5~1531 30~32,34,38~41
    rna:AX:1~5 34~37
    rna:BA:6~2891 3,11~13,24~25,74~76
    2956 4v6a:BA
    (3.1Å)
    		 2767 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 19696344 Assembly1
    rna:AA:5~1531 1689,1700~1704,1832,1836~1837,
    1846,1848,1895,1912~1913,1915~
    1916,1919~1920,1947~1948,1959~
    1961,2863~2864
    rna:AW:1~76 1907~1909,1922~1924,2064,2251~
    2253,2255,2439,2450~2451,2601~
    2602
    rna:BB:1~119 861~864,915~919
    2957 4v6a:BB
    (3.1Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 19696344 Assembly1
    rna:BA:6~2891 78~81,97~98,100~101
    2958 4v6a:CA
    (3.1Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DD29 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 19696344 Assembly2
    rna:CW:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:CX:1~5 926,1400~1403,1498
    rna:DA:6~2897 702,783~784,899~900,1407~1409,
    1418,1420,1429,1442A,1473~1475
    ,1483~1484,1491,1493~1496,1517
    2959 4v6a:CW
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 19696344 Assembly2
    rna:CA:5~1531 29~32,34,38~41
    rna:CX:1~5 34~37
    rna:DA:6~2897 11~13,24~25,74~76
    2960 4v6a:DA
    (3.1Å)
    		 2777 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 19696344 Assembly2
    rna:CA:5~1531 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1948,1950,1959~
    1960,2863~2864
    rna:CW:1~76 1908~1909,1922~1924,2064,2251~
    2253,2439,2450~2451,2585,2601~
    2602
    rna:DB:1~119 861~863,917~919,1026~1028
    2961 4v6a:DB
    (3.1Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 19696344 Assembly2
    rna:DA:6~2897 78~81,88,97~98,100~101
    2962 4v6c:AA
    (3.19Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E246 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 19696352 Assembly1
    rna:BA:1~2903 702,784,899,1407~1409,1418~142
    0,1429,1473~1475,1483~1484,149
    1~1492,1494~1496,1517
    2963 4v6c:BA
    (3.19Å)
    		 2854 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 19696352 Assembly1
    rna:AA:2~1534 1700~1703,1832,1837,1846~1847,
    1912~1913,1915,1919~1920,1947~
    1949,1959~1960
    rna:BB:2~119 861~864,915,917~919,958
    2964 4v6c:BB
    (3.19Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000366A67 RF00001 Escherichia
    coli
    562    		 19696352 Assembly1
    rna:BA:1~2903 78~81,89~90,96~97,99~100
    2965 4v6c:CA
    (3.19Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E24C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 19696352 Assembly2
    rna:DA:1~2903 702,783~784,899,1407~1409,1418
    ,1420,1428~1429,1473~1475,1483
    ~1484,1492~1496,1517
    2966 4v6c:DA
    (3.19Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 19696352 Assembly2
    rna:CA:5~1534 1686,1689,1700~1704,1832,1836~
    1837,1846,1848,1912~1913,1915~
    1916,1919~1920,1947~1948,1950,
    1959~1961
    rna:DB:2~118 861~863,915,917~919,958
    2967 4v6c:DB
    (3.19Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DF7E RF00001 Escherichia
    coli
    562    		 19696352 Assembly2
    rna:DA:1~2903 78~81,89~90,96~97,99~100
    2968 4v6d:AA
    (3.814Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E246 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 19696352 Assembly1
    rna:AV:27~43 790,966,1229~1230,1338~1340,14
    00
    rna:AW:1~6 790,926,1400~1402,1497~1498,15
    05
    rna:BA:1~2903 702,1407~1409,1418,1429,1483~1
    484,1491~1492,1494~1496,1517
    2969 4v6d:AV
    (3.814Å)
    		 17 N/A URS000080E2A3 N/A synthetic
    construct
    32630    		 19696352 Assembly1
    rna:AA:2~1534 30~32,34,38,40~41
    rna:AW:1~6 34~37
    2970 4v6d:BA
    (3.814Å)
    		 2854 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 19696352 Assembly1
    rna:AA:2~1534 1703~1704,1846~1847,1912~1914,
    1916,1919~1920,1947~1948,1959~
    1961
    rna:BB:2~119 861~863,915,917~919,958
    2971 4v6d:BB
    (3.814Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000366A67 RF00001 Escherichia
    coli
    562    		 19696352 Assembly1
    rna:BA:1~2903 78~81,89~90,96~97,99~100
    2972 4v6d:CA
    (3.814Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E24C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 19696352 Assembly2
    rna:CV:27~43 790,966,1229~1230,1338~1340,14
    00
    rna:CW:1~6 790,926,1400,1402~1403,1493~14
    94,1497~1498,1505
    rna:DA:1~2903 702,783~784,899,1407~1409,1418
    ,1428~1429,1473~1475,1483~1484
    ,1492~1495,1517
    2973 4v6d:CV
    (3.814Å)
    		 17 N/A URS000080E2A3 N/A synthetic
    construct
    32630    		 19696352 Assembly2
    rna:CA:5~1534 29~32,34,38~41
    rna:CW:1~6 34~37
    2974 4v6d:DA
    (3.814Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 19696352 Assembly2
    rna:CA:5~1534 1686,1689,1700~1704,1832,1836~
    1837,1848,1912~1916,1919~1920,
    1947~1948,1959~1960
    rna:DB:2~118 861~864,915,917~919,958
    2975 4v6d:DB
    (3.814Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DF7E RF00001 Escherichia
    coli
    562    		 19696352 Assembly2
    rna:DA:1~2903 78~81,89~90,96~97,99~100
    2976 4v6e:AA
    (3.712Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E246 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 19696352 Assembly1
    rna:AV:27~43 790,966,1229~1230,1338~1340,14
    00
    rna:AW:1~6 926,1401,1492~1493,1498,1505
    rna:AX:27~43 530~531,1054,1493
    rna:BA:1~2903 702,1407~1409,1418~1420,1429,1
    473,1475,1483~1484,1493~1495,1
    517
    2977 4v6e:AV
    (3.712Å)
    		 17 GO:0030533 (F) triplet codon-amino aci... URS000080DF54 RF00005 synthetic
    construct
    32630    		 19696352 Assembly1
    rna:AA:2~1534 29~31,34,38~39,41
    rna:AW:1~6 34~37
    2978 4v6e:AX
    (3.712Å)
    		 17 GO:0030533 (F) triplet codon-amino aci... URS000080DF54 RF00005 synthetic
    construct
    32630    		 19696352 Assembly1
    rna:AA:2~1534 34~37
    rna:AW:1~6 34~37
    rna:BA:1~2903 37~38
    2979 4v6e:BA
    (3.712Å)
    		 2854 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 19696352 Assembly1
    rna:AA:2~1534 1689,1700,1702~1704,1846,1912~
    1913,1915~1916,1919~1920,1947~
    1950,1959~1960
    rna:BB:2~119 861~863,915~919,958
    2980 4v6e:BB
    (3.712Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000366A67 RF00001 Escherichia
    coli
    562    		 19696352 Assembly1
    rna:BA:1~2903 78~81,89~90,96~97,99~100
    2981 4v6e:CA
    (3.712Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E24C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 19696352 Assembly2
    rna:CV:27~43 790,966,1229~1230,1338~1341,14
    00
    rna:CW:1~6 926,1401~1403,1492~1493,1498,1
    505
    rna:CX:27~43 530~531,1054,1492~1493
    rna:DA:1~2903 702,783~784,899,1407~1409,1418
    ,1428~1429,1473~1475,1483~1484
    ,1494~1495,1517
    2982 4v6e:CV
    (3.712Å)
    		 17 GO:0030533 (F) triplet codon-amino aci... URS000080DF54 RF00005 synthetic
    construct
    32630    		 19696352 Assembly2
    rna:CA:5~1534 29~32,34,38,40~41
    rna:CW:1~6 34~37
    2983 4v6e:CX
    (3.712Å)
    		 17 GO:0030533 (F) triplet codon-amino aci... URS000080DF54 RF00005 synthetic
    construct
    32630    		 19696352 Assembly2
    rna:CA:5~1534 34~37
    rna:CW:1~6 34~37
    rna:DA:1~2903 37~38
    2984 4v6e:DA
    (3.712Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 19696352 Assembly2
    rna:CA:5~1534 1686,1689,1700~1703,1832,1836~
    1837,1846,1848,1912~1916,1919~
    1920,1947~1948,1959~1961
    rna:DB:2~118 861~864,915,917~919,958
    2985 4v6e:DB
    (3.712Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DF7E RF00001 Escherichia
    coli
    562    		 19696352 Assembly2
    rna:DA:1~2903 78~80,89,96~97,99~100
    2986 4v6f:AA
    (3.1Å)
    		 2909 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E2BB RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 20400952 Assembly1
    rna:AB:1M~119 861~864,915,917~919,958,1027
    rna:BA:4~1542 1689,1701~1704,1832,1836~1837,
    1846,1848,1895,1912~1913,1915~
    1916,1919~1920,1947~1948,1959~
    1961,2864
    rna:BD:1~76 1850~1852,1893,2111~2112,2145,
    2169,2394~2395,2421~2422
    rna:BB:1~76 881~882,896,1913,2493,2507,255
    3~2555,2583~2584,2602
    rna:BC:1~76 1907~1909,1922~1924,2064,2251~
    2253,2450~2451,2602
    2987 4v6f:AB
    (3.1Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 20400952 Assembly1
    rna:AA:1~2902 78~81,88,89A,96~97,99~100
    2988 4v6f:B1
    (3.1Å)
    		 30 N/A URS0002335939 N/A N/A 20400952 Assembly1
    rna:BA:4~1542 29,31~38,40~43,45~51,53
    rna:BD:1~76 43~44
    rna:BB:1~76 49~52
    rna:BC:1~76 46~48
    2989 4v6f:BA
    (3.1Å)
    		 1516 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E21A RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 20400952 Assembly1
    rna:AA:1~2902 702,783~784,899,1407~1409,1418
    ,1429~1430,1443,1473~1475,1483
    ~1485,1493~1496,1517
    rna:BD:1~76 693~694,936~937,1382~1383
    rna:BB:1~76 530~531,1054,1493
    rna:BC:1~76 790,966,1338~1340,1400
    rna:B1:28~57 530,693,723,926,1196,1400,1492
    ~1493,1498,1503,1505,1531~1542
    2990 4v6f:BB
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 20400952 Assembly1
    rna:AA:1~2902 19,37,56,64,73~76
    rna:BA:4~1542 34~37
    rna:B1:28~57 34~37
    2991 4v6f:BC
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 20400952 Assembly1
    rna:AA:1~2902 11~13,24~25,74~76
    rna:BA:4~1542 30~32,34,38~41
    rna:B1:28~57 34~37
    2992 4v6f:BD
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 20400952 Assembly1
    rna:AA:1~2902 3~4,17,19,56,70~71,76
    rna:BA:4~1542 34,37~38
    rna:B1:28~57 35~37
    2993 4v6f:C1
    (3.1Å)
    		 30 N/A URS0002335939 N/A N/A 20400952 Assembly2
    rna:CA:5~1542 31~43,45~51,53
    rna:CD:1~76 43~44
    rna:CB:1~76 49~52
    rna:CC:1~76 46~48
    2994 4v6f:CA
    (3.1Å)
    		 1515 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFBF RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 20400952 Assembly2
    rna:CD:1~76 694,936~937,1382~1383
    rna:CB:1~76 530~531,1054,1493
    rna:CC:1~76 790,966,1229,1338~1340,1400
    rna:C1:28~57 530,693,723,926,1196,1400,1492
    ~1493,1498,1503,1506~1507,1531
    ~1541
    rna:DA:1~2902 702,783~784,899~900,1407~1409,
    1418,1429~1430,1443,1473~1475,
    1483~1484,1494~1496,1517
    2995 4v6f:CB
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 20400952 Assembly2
    rna:CA:5~1542 34~37
    rna:C1:28~57 34~37
    rna:DA:1~2902 19,37~38,56,64,74~76
    2996 4v6f:CC
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 20400952 Assembly2
    rna:CA:5~1542 29~32,34,38,40~41
    rna:C1:28~57 34~37
    rna:DA:1~2902 11~13,24~25,74~76
    2997 4v6f:CD
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 20400952 Assembly2
    rna:CA:5~1542 34,37~38
    rna:C1:28~57 36~37
    rna:DA:1~2902 3~4,19,56,70~71,76
    2998 4v6f:DA
    (3.1Å)
    		 2912 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E23D RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    274    		 20400952 Assembly2
    rna:CA:5~1542 1700~1704,1832,1836~1837,1846,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1949,1959~1961,2863~
    2864
    rna:CD:1~76 1850~1852,1892~1893,2112,2169,
    2394~2395,2421~2422
    rna:CB:1~76 881~882,896~897,1913,2483,2506
    ~2507,2553~2555,2583~2584,2602
    rna:CC:1~76 1907~1909,1922~1924,2251~2253,
    2255,2450~2451,2601~2602
    rna:DB:1M~119 861~864,915~919,958
    2999 4v6f:DB
    (3.1Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 20400952 Assembly2
    rna:DA:1~2902 78~81,89A,96~97,99~100
    3000 4v6g:A1
    (3.5Å)
    		 23 N/A N/A N/A synthetic
    construct
    32630    		 20400952 Assembly1
    rna:AA:3~1542 3~14,16~19,21~23
    rna:AC:1~76 16~18
    << < 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.