SEQ2FUN

FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    3201 4v7h:B4
    (8.9Å)
    		 157 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE78 RF00002 Thermomyces
    lanuginosus
    5541    		 20004163 Assembly1
    rna:B5:1~3396 1~3,5~22,24~37,40,104,128,139~
    140,142~158
    3202 4v7h:B5
    (8.9Å)
    		 3170 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFA9 RF02540
    RF02543    		 Thermomyces
    lanuginosus
    5541    		 20004163 Assembly1
    rna:AA:1~1795 846~848,1932~1936,2124~2126,21
    90~2197,2206~2207,2255~2256,22
    62~2264,2274,2291,2300~2304,23
    28~2330
    rna:A7:1~76 2211~2212,2234~2236,2422,2454,
    2484,2603
    rna:B3:1~118 997~998,1054~1056,1202~1203,28
    56
    rna:B4:1~158 1~9,11~13,15~24,128~133,329~33
    7,339~345,349,368,404~410,412~
    419,1397,1571,2585,3155~3156
    3203 4v7i:A7
    (9.6Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 19913480 Assembly1
    rna:A8:1~2903 41,78~81,96~101
    3204 4v7i:A8
    (9.6Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    562    		 19913480 Assembly1
    rna:A7:2~118 861~863,915~919,2339~2340
    rna:BA:5~1534 1689,1700,1702~1704,1837,1846~
    1848,1895,1912~1914,1916,1919~
    1920,1947~1948,1959~1961
    3205 4v7i:BA
    (9.6Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 19913480 Assembly1
    rna:A8:1~2903 702,784,1407~1409,1418,1428~14
    29,1473~1476,1483~1484,1492~14
    96,1517
    3206 4v7j:AA
    (3.3Å)
    		 2848 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E03F RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 20005802 Assembly1
    rna:Aa:5~1531 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1949,1959~1961,
    2864
    rna:Av:1~76 1907~1909,1922~1924,2251~2253,
    2255,2450~2451,2602
    rna:Aw:1~76 2112,2169,2180,2394~2395,2421~
    2422
    rna:AB:1~119 861~864,915~919
    3207 4v7j:AB
    (3.3Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE2B RF00001 Thermus
    thermophilus
    HB8
    300852    		 20005802 Assembly1
    rna:AA:6~2897 78~81,88,97~98,100~101
    3208 4v7j:Aa
    (3.3Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E260 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 20005802 Assembly1
    rna:Ax:13~24 693,926,1054,1196,1400~1402,14
    98,1505~1506
    rna:Av:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:AA:6~2897 702,783~784,899,1407~1409,1418
    ,1429,1442A,1473~1475,1483~148
    4,1493~1495,1517
    3209 4v7j:Av
    (3.3Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    274    		 20005802 Assembly1
    rna:Aa:5~1531 29~32,34,38~41
    rna:Ax:13~24 34~37
    rna:AA:6~2897 11~13,24~25,74~76
    3210 4v7j:Aw
    (3.3Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    274    		 20005802 Assembly1
    rna:AA:6~2897 17A,19,56,76
    3211 4v7j:Ax
    (3.3Å)
    		 12 N/A URS000080E2A4 N/A synthetic
    construct
    32630    		 20005802 Assembly1
    rna:Aa:5~1531 13,15~18,21,23~24
    rna:Av:1~76 16~19
    rna:Aw:1~76 13~14
    3212 4v7j:BA
    (3.3Å)
    		 2848 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E03F RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 20005802 Assembly2
    rna:Ba:5~1531 1689,1701~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1948,1959~1961,
    2863~2864
    rna:Bv:1~76 1907~1909,1923~1924,2251~2253,
    2450~2451,2602
    rna:Bw:1~76 1851~1852,2112,2169,2180,2394~
    2395,2421~2422
    rna:BB:1~119 861~863,917~918,1027
    3213 4v7j:BB
    (3.3Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE2B RF00001 Thermus
    thermophilus
    HB8
    300852    		 20005802 Assembly2
    rna:BA:6~2897 78~80,88,98,100~101
    3214 4v7j:Ba
    (3.3Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E260 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 20005802 Assembly2
    rna:Bx:13~24 693,926,1054,1196,1400~1401,14
    98,1505
    rna:Bv:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:BA:6~2897 702,784,899,1407~1409,1418,142
    9,1442A,1473~1475,1483~1484,14
    93~1495,1517
    3215 4v7j:Bv
    (3.3Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    274    		 20005802 Assembly2
    rna:Ba:5~1531 30~32,34,38~41
    rna:Bx:13~24 34~37
    rna:BA:6~2897 11~12,24~25,74~76
    3216 4v7j:Bw
    (3.3Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    274    		 20005802 Assembly2
    rna:BA:6~2897 17A,19,56,71~72,76
    3217 4v7j:Bx
    (3.3Å)
    		 12 N/A URS000080E2A4 N/A synthetic
    construct
    32630    		 20005802 Assembly2
    rna:Ba:5~1531 13,15~18,21~23
    rna:Bv:1~76 16~19
    3218 4v7k:AA
    (3.6Å)
    		 2848 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E03F RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 20005802 Assembly1
    rna:Aa:5~1531 1689,1700~1704,1832,1836~1837,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1948,1959~1961,2864
    rna:Av:1~76 1907~1909,1922~1924,2251~2253,
    2450~2451,2602
    rna:Aw:1~76 2112,2169,2180,2394~2395,2421~
    2422
    rna:AB:1~119 861~864,915~919
    3219 4v7k:AB
    (3.6Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE2B RF00001 Thermus
    thermophilus
    HB8
    300852    		 20005802 Assembly1
    rna:AA:6~2897 78~81,88,97~101
    3220 4v7k:Aa
    (3.6Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E260 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 20005802 Assembly1
    rna:Ax:9~20 693,789,926,1400,1402,1498,150
    5
    rna:Av:1~76 790,966,1229~1230,1338~1341,14
    00
    rna:AA:6~2897 702,783~784,899,1407~1409,1418
    ,1429~1430,1442A,1473~1475,148
    3~1484,1493~1496,1517
    3221 4v7k:Av
    (3.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    274    		 20005802 Assembly1
    rna:Aa:5~1531 29~32,34,38~41
    rna:Ax:9~20 1,34~37
    rna:AA:6~2897 11~13,24~25,74~76
    3222 4v7k:Aw
    (3.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    274    		 20005802 Assembly1
    rna:Ax:9~20 34~35
    rna:AA:6~2897 17A,19,56,72,76
    3223 4v7k:Ax
    (3.6Å)
    		 13 N/A URS000080E16E N/A synthetic
    construct
    32630    		 20005802 Assembly1
    rna:Aa:5~1531 13~18
    rna:Av:1~76 16~18,20
    rna:Aw:1~76 13~14
    3224 4v7k:BA
    (3.6Å)
    		 2848 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E03F RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 20005802 Assembly2
    rna:Ba:5~1531 1689,1701~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1949,1959~1961,
    2864
    rna:Bv:1~76 1907~1909,1922~1924,2063~2064,
    2251~2253,2450~2451,2602
    rna:Bw:1~76 1851~1852,2112,2169,2180,2394~
    2395,2421~2422
    rna:BB:1~119 861~864,915,917~919,1027~1028
    3225 4v7k:BB
    (3.6Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE2B RF00001 Thermus
    thermophilus
    HB8
    300852    		 20005802 Assembly2
    rna:BA:6~2897 78~81,88,97~98,100~101
    3226 4v7k:Ba
    (3.6Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E260 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 20005802 Assembly2
    rna:Bx:9~20 789,926,1400~1402,1498,1503,15
    05
    rna:Bv:1~76 790,966,1229~1230,1338~1341,14
    00
    rna:BA:6~2897 702,783~784,899,1407~1409,1418
    ,1429~1430,1442A,1473~1475,148
    3~1484,1491,1493~1496,1517
    3227 4v7k:Bv
    (3.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    274    		 20005802 Assembly2
    rna:Ba:5~1531 30~32,34,38~41
    rna:Bx:9~20 1,35~37
    rna:BA:6~2897 11~13,24~25,74~76
    3228 4v7k:Bw
    (3.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    274    		 20005802 Assembly2
    rna:BA:6~2897 17A,19,56,71~72,76
    3229 4v7k:Bx
    (3.6Å)
    		 13 N/A URS000080E16E N/A synthetic
    construct
    32630    		 20005802 Assembly2
    rna:Ba:5~1531 13~14,16~18
    rna:Bv:1~76 16~18,20
    rna:Bw:1~76 14~15
    3230 4v7l:AA
    (3.0Å)
    		 1495 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DD29 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 20154709 Assembly1
    rna:AV:1~10 530,693,926,1400~1401,1403,149
    2~1493,1498,1505
    rna:AW:1~75 530,1054,1493
    rna:AX:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:AY:1~75 693,1340
    rna:BA:6~2897 702,783~784,899~900,1406~1409,
    1418,1420,1429,1442A,1473~1475
    ,1483~1485,1494~1496,1517
    3231 4v7l:AV
    (3.0Å)
    		 10 N/A URS000080DEFF N/A synthetic
    construct
    32630    		 20154709 Assembly1
    rna:AA:5~1531 1,3~9
    rna:AW:1~75 7~9
    rna:AX:1~76 4~6
    rna:AY:1~75 1~2
    3232 4v7l:AW
    (3.0Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00004FF598 RF00005 Escherichia
    coli
    DH1
    536056    		 20154709 Assembly1
    rna:AA:5~1531 33~36
    rna:AV:1~10 33~36
    rna:BA:6~2897 18~19,36~37,51,55,62,73~75
    3233 4v7l:AX
    (3.0Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    DH1
    536056    		 20154709 Assembly1
    rna:AA:5~1531 30~32,34,38,40~41
    rna:AV:1~10 34~37
    rna:BA:6~2897 11~13,24~25,74~76
    3234 4v7l:AY
    (3.0Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E16B RF00005 Escherichia
    coli
    DH1
    536056    		 20154709 Assembly1
    rna:AA:5~1531 34,36
    rna:AV:1~10 33,35
    rna:BA:6~2897 18,55,70~71,75
    3235 4v7l:BA
    (3.0Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 20154709 Assembly1
    rna:AA:5~1531 1689,1700~1704,1832,1836~1837,
    1846,1848,1895,1912~1913,1915~
    1916,1919~1920,1947~1950,1959~
    1961,2863~2864
    rna:AW:1~75 881,897~898,1913,1942,2470,248
    2,2506~2507,2553~2555,2573,258
    3,2585,2602
    rna:AX:1~76 1907~1909,1923~1924,2251~2253,
    2450~2451,2601~2602
    rna:AY:1~75 1851~1852,2112,2169,2394~2395,
    2421~2422,2432
    rna:BB:1~119 861~864,915,917~919,1026~1028
    3236 4v7l:BB
    (3.0Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 20154709 Assembly1
    rna:BA:6~2897 78~81,88,97,100~101
    3237 4v7l:CA
    (3.0Å)
    		 1495 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DD29 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 20154709 Assembly2
    rna:CV:1~10 530,693,926,1397,1400,1402~140
    3,1492~1493,1498,1505
    rna:CW:1~75 530~531,1054,1493
    rna:CX:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:CY:1~75 693~694,1340
    rna:DA:6~2897 702,783~784,899~900,1407~1409,
    1418,1429~1430,1442A,1473~1475
    ,1483~1485,1494~1496,1517
    3238 4v7l:CV
    (3.0Å)
    		 10 N/A URS000080DEFF N/A synthetic
    construct
    32630    		 20154709 Assembly2
    rna:CA:5~1531 1,3~10
    rna:CW:1~75 7~9
    rna:CX:1~76 4~6
    3239 4v7l:CW
    (3.0Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00004FF598 RF00005 Escherichia
    coli
    DH1
    536056    		 20154709 Assembly2
    rna:CA:5~1531 33~36
    rna:CV:1~10 33~36
    rna:DA:6~2897 36~37,55,62,73~75
    3240 4v7l:CX
    (3.0Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    DH1
    536056    		 20154709 Assembly2
    rna:CA:5~1531 30~32,34,38,40~41
    rna:CV:1~10 34~37
    rna:DA:6~2897 11~13,24~25,74~76
    3241 4v7l:CY
    (3.0Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E16B RF00005 Escherichia
    coli
    DH1
    536056    		 20154709 Assembly2
    rna:CA:5~1531 34,37
    rna:DA:6~2897 18,55,70~71,75
    3242 4v7l:DA
    (3.0Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 20154709 Assembly2
    rna:CA:5~1531 1700~1704,1832,1836~1837,1848,
    1895,1912~1913,1916,1919~1920,
    1947~1948,1959~1961
    rna:CW:1~75 897,1913,2507,2553,2555,2573,2
    583~2585,2602
    rna:CX:1~76 1907~1909,1923~1924,2251~2253,
    2451,2585,2601~2602
    rna:CY:1~75 1851~1852,2112,2169,2394~2395,
    2421~2422,2432
    rna:DB:1~119 861~864,915,917~919,958,1027~1
    028
    3243 4v7l:DB
    (3.0Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 20154709 Assembly2
    rna:DA:6~2897 78~81,88,91,97~98,100~101
    3244 4v7m:AA
    (3.45Å)
    		 1495 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E145 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 20154709 Assembly1
    rna:AV:1~10 530,693,926,1397,1400~1401,140
    3,1492~1493,1498
    rna:AW:2~75 530~531,1054,1493
    rna:AX:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:AY:1~75 693,1340
    rna:BA:6~2896 702,783~784,899,1407~1409,1418
    ,1429,1442A,1473~1475,1483~148
    4,1494~1495,1517
    3245 4v7m:AV
    (3.45Å)
    		 10 N/A URS000080DEFF N/A synthetic
    construct
    32630    		 20154709 Assembly1
    rna:AA:5~1531 1,4~10
    rna:AW:2~75 7~9
    rna:AX:1~76 4~6
    3246 4v7m:AW
    (3.45Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00004FF598 RF00005 Escherichia
    coli
    DH1
    536056    		 20154709 Assembly1
    rna:AA:5~1531 33~36
    rna:AV:1~10 33~36
    rna:BA:6~2896 36,51,55,62,70,73~75
    3247 4v7m:AX
    (3.45Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    DH1
    536056    		 20154709 Assembly1
    rna:AA:5~1531 30~32,34,38~41
    rna:AV:1~10 34~37
    rna:BA:6~2896 11~13,24~25,74~76
    3248 4v7m:AY
    (3.45Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E16B RF00005 Pectobacterium
    parmentieri
    WPP163
    561231    		 20154709 Assembly1
    rna:AA:5~1531 34,36
    rna:BA:6~2896 18,55,70~71,75
    3249 4v7m:BA
    (3.45Å)
    		 2789 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 20154709 Assembly1
    rna:AA:5~1531 1689,1700~1704,1832,1836~1837,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1948,1959~1961,2863~
    2864
    rna:AW:2~75 897,1913,1942,2470,2482,2506~2
    507,2553~2555,2583~2585,2602
    rna:AX:1~76 1907~1909,1922~1924,2251~2253,
    2439,2450~2451,2601~2602
    rna:AY:1~75 1851~1852,2112,2169,2394~2395,
    2421~2422
    rna:BB:1~119 861~863,915,917~919,958
    3250 4v7m:BB
    (3.45Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 20154709 Assembly1
    rna:BA:6~2896 78~81,90,97~98,100~101
    3251 4v7m:CA
    (3.45Å)
    		 1493 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E145 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 20154709 Assembly2
    rna:CV:1~10 530,693,926,1397,1400~1403,149
    2~1493,1498,1505~1506
    rna:CW:2~75 530,1054,1493
    rna:CX:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:DA:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1473~1475,1483
    ~1484,1493~1496,1517
    3252 4v7m:CV
    (3.45Å)
    		 10 N/A URS000080DEFF N/A synthetic
    construct
    32630    		 20154709 Assembly2
    rna:CA:5~1531 1,3~10
    rna:CW:2~75 7~9
    rna:CX:1~76 4~6
    3253 4v7m:CW
    (3.45Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00004FF598 RF00005 Escherichia
    coli
    DH1
    536056    		 20154709 Assembly2
    rna:CA:5~1531 33~36
    rna:CV:1~10 33~36
    rna:DA:6~2897 36~37,51,62,71,73~75
    3254 4v7m:CX
    (3.45Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    DH1
    536056    		 20154709 Assembly2
    rna:CA:5~1531 29~32,34,38,40~41
    rna:CV:1~10 34~37
    rna:DA:6~2897 11~13,24~25,74~76
    3255 4v7m:CY
    (3.45Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E16B RF00005 Pectobacterium
    parmentieri
    WPP163
    561231    		 20154709 Assembly2
    rna:CX:1~76 33~34
    rna:DA:6~2897 18,55,70~71,75
    3256 4v7m:DA
    (3.45Å)
    		 2775 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 20154709 Assembly2
    rna:CA:5~1531 1700,1702~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1948,1959~1961,
    2863~2864
    rna:CW:2~75 1913,1942,2470,2482,2506~2508,
    2553,2555,2573,2583~2585,2602
    rna:CX:1~76 1907~1909,1922~1924,2064,2251~
    2253,2450~2451,2601~2602
    rna:CY:1~75 1851~1852,2112,2169,2394~2395,
    2421~2422,2432
    rna:DB:1~119 861~864,915,917~919
    3257 4v7m:DB
    (3.45Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 20154709 Assembly2
    rna:DA:6~2897 78~81,98,100~101
    3258 4v7p:AA
    (3.62Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E1FC RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB27
    262724    		 20588254 Assembly1
    rna:AW:1~76 790,966,1338~1340,1400
    rna:AX:15~21 530,926,1400~1401,1492~1493,14
    98
    rna:BA:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1443,1473~1475,1483~
    1484,1493~1495,1517
    3259 4v7p:AW
    (3.62Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    BL21(DE3)
    469008    		 20588254 Assembly1
    rna:AA:5~1531 30~31,34,38,40~41
    rna:AX:15~21 34~37
    rna:BA:6~2897 2~3,11~13,24~25,74~76
    3260 4v7p:BA
    (3.62Å)
    		 2879 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEC7 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB27
    262724    		 20588254 Assembly1
    rna:AA:5~1531 1689,1700~1704,1832,1836~1837,
    1848,1912~1913,1916,1919~1920,
    1947~1948,1959~1960,2863~2864
    rna:AW:1~76 1907~1909,1922~1924,2063~2064,
    2251~2253,2255,2450~2451,2602
    rna:BB:1~118 861~863,915,917~919
    3261 4v7p:BB
    (3.62Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE2B RF00001 Thermus
    thermophilus
    HB27
    262724    		 20588254 Assembly1
    rna:BA:6~2897 78~81,97,100
    3262 4v7p:CA
    (3.62Å)
    		 2879 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEC7 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB27
    262724    		 20588254 Assembly2
    rna:CB:1~118 861~863,915,917~919
    rna:DA:5~1531 1700,1702~1703,1832,1837,1848,
    1912~1913,1915~1916,1919~1920,
    1947~1948,1950,1959~1960,2864
    rna:DW:1~76 1907~1909,1922~1924,2063~2064,
    2251~2253,2255,2450~2451,2602
    3263 4v7p:CB
    (3.62Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE2B RF00001 Thermus
    thermophilus
    HB27
    262724    		 20588254 Assembly2
    rna:CA:6~2897 78~81,96~97,99~100
    3264 4v7p:DA
    (3.62Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E1FC RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB27
    262724    		 20588254 Assembly2
    rna:CA:6~2897 702,784,899,1407~1409,1418,142
    0,1429,1443,1473,1475,1483~148
    4,1493~1495,1517
    rna:DW:1~76 790,966,1338~1340,1400
    rna:DX:15~23 530,926,1196,1397,1400~1401,14
    92~1493,1498
    3265 4v7p:DW
    (3.62Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    BL21(DE3)
    469008    		 20588254 Assembly2
    rna:CA:6~2897 2~3,11~12,24~25,74~76
    rna:DA:5~1531 30~32,34,38,40~41
    rna:DX:15~23 34~37
    3266 4v7r:A1
    (4.0Å)
    		 1789 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2C2D RF01960
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 21109664
    101

    441

    M080_0.6

    386

    M107_0.6

    497

    490

    562    		 Assembly1
    rna:B1:3~3396 629,913,971~972,1644,1646,1655
    ~1656,1667~1668,1746,1757~1758
    ,1780
    3267 4v7r:B1
    (4.0Å)
    		 3206 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02540
    RF02543    		 Saccharomyces
    cerevisiae
    S288C
    559292    		 21109664 Assembly1
    rna:A1:1~1800 846~847,1935~1936,2205,2256,22
    58,2262~2263,2290~2292,2302
    rna:B2:1~121 996~999,1052,1054~1056,1171,11
    96
    rna:B3:1~158 3~14,16~23,59,145,331~337,339~
    341,345~346,349,351,368~369,40
    4~419,657,691,1394~1395,1399,1
    419~1420,1441,1530,1570,1618,1
    830~1832,2386,2585,2994~2995
    3268 4v7r:B2
    (4.0Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 21109664 Assembly1
    rna:B1:3~3396 79~82,86,100,102~104
    3269 4v7r:B3
    (4.0Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 21109664
    441    		 Assembly1
    rna:B1:3~3396 1~22,24~37,40,52~54,104,113~11
    5,127,129,137,139~152,154~157
    3270 4v7r:C1
    (4.0Å)
    		 1789 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2C2D RF01960
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 21109664
    101

    441

    M080_0.6

    386

    M107_0.6

    497

    490

    562    		 Assembly2
    rna:D1:3~3396 627~629,971~974,1644~1645,1655
    ~1656,1746~1748,1758
    3271 4v7r:D1
    (4.0Å)
    		 3206 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02540
    RF02543    		 Saccharomyces
    cerevisiae
    S288C
    559292    		 21109664 Assembly2
    rna:C1:1~1800 846~848,2262,2290~2292,2302~23
    04
    rna:D2:1~121 996~999,1052,1054~1056,1171,11
    96
    rna:D3:1~158 3~14,16~23,59,145,331~337,339~
    342,345~346,349,351,368~369,40
    4~419,656~657,691,1394~1395,13
    99,1419,1441,1530,1570,1618,18
    30~1832,2386,2585,2994~2995
    3272 4v7r:D2
    (4.0Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 21109664 Assembly2
    rna:D1:3~3396 79~82,86,90,100,102~104
    3273 4v7r:D3
    (4.0Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 21109664
    441    		 Assembly2
    rna:D1:3~3396 1~22,24~37,40,52~54,104,109,11
    3~115,127,129,137,139~152,154~
    157
    3274 4v7s:AA
    (3.2547Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E246 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 20876128 Assembly1
    rna:BA:1~2903 702,784,899,1407~1409,1418,142
    8~1429,1473~1475,1483~1484,149
    1~1492,1494~1496,1517
    3275 4v7s:BA
    (3.2547Å)
    		 2854 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 20876128 Assembly1
    rna:AA:2~1534 1689,1700~1703,1832,1837,1846~
    1847,1912~1913,1915~1916,1919~
    1920,1947~1948,1959~1960
    rna:BB:2~119 861~864,915,917~919,958
    3276 4v7s:BB
    (3.2547Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000366A67 RF00001 Escherichia
    coli
    K-12
    83333    		 20876128 Assembly1
    rna:BA:1~2903 78~81,89~90,96~97,99~100
    3277 4v7s:CA
    (3.2547Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E24C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 20876128 Assembly2
    rna:DA:1~2903 702,783~784,899,1408~1409,1418
    ,1428~1429,1473~1475,1483~1484
    ,1492~1496,1517
    3278 4v7s:DA
    (3.2547Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 20876128 Assembly2
    rna:CA:5~1534 1686,1689,1700~1704,1832,1836~
    1837,1846,1848,1912~1913,1915~
    1916,1919~1920,1947~1948,1959~
    1961
    rna:DB:2~118 861~863,915~919,958
    3279 4v7s:DB
    (3.2547Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DF7E RF00001 Escherichia
    coli
    K-12
    83333    		 20876128 Assembly2
    rna:DA:1~2903 78~81,89~90,96~97,99~100
    3280 4v7t:AA
    (3.1942Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E246 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 20876128 Assembly1
    rna:BA:1~2903 702,784,899,1407~1409,1418~142
    0,1429,1473~1475,1483~1484,149
    1~1492,1494~1495,1517
    3281 4v7t:BA
    (3.1942Å)
    		 2854 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 20876128 Assembly1
    rna:AA:2~1534 1700~1703,1832,1837,1846~1847,
    1912~1916,1919~1920,1947~1950,
    1959~1960
    rna:BB:2~119 861~864,915,917~919,958
    3282 4v7t:BB
    (3.1942Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000366A67 RF00001 Escherichia
    coli
    K-12
    83333    		 20876128 Assembly1
    rna:BA:1~2903 78~81,89~90,96~97,99~100
    3283 4v7t:CA
    (3.1942Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E24C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 20876128 Assembly2
    rna:DA:1~2903 702,783~784,899,1407~1409,1418
    ,1428~1429,1473~1475,1483~1484
    ,1492~1495,1517
    3284 4v7t:DA
    (3.1942Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    562    		 20876128 Assembly2
    rna:CA:5~1534 1686,1689,1700~1703,1832,1836~
    1837,1846,1848,1912~1913,1915~
    1916,1919~1920,1948,1959~1961
    rna:DB:2~118 861~863,915,917~919,958
    3285 4v7t:DB
    (3.1942Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DF7E RF00001 Escherichia
    coli
    K-12
    83333    		 20876128 Assembly2
    rna:DA:1~2903 78~81,89~90,96~97,99~100
    3286 4v7u:AA
    (3.1Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E246 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 20876128 Assembly1
    rna:BA:1~2903 702,899,1407~1409,1418~1420,14
    29,1473~1475,1483~1484,1491,14
    94~1495,1517
    3287 4v7u:BA
    (3.1Å)
    		 2854 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    562    		 20876128 Assembly1
    rna:AA:2~1534 1689,1701~1704,1832,1846~1847,
    1912~1913,1915~1916,1919~1920,
    1947~1950,1959~1960
    rna:BB:2~119 861~864,915,917~919,958
    3288 4v7u:BB
    (3.1Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000366A67 RF00001 Escherichia
    coli
    K-12
    83333    		 20876128 Assembly1
    rna:BA:1~2903 78~81,89~90,96~97,99~100
    3289 4v7u:CA
    (3.1Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E246 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 20876128 Assembly2
    rna:DA:1~2903 702,783~784,899,1407~1409,1418
    ,1420,1428~1430,1473~1475,1483
    ~1484,1492~1496,1517
    3290 4v7u:DA
    (3.1Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    562    		 20876128 Assembly2
    rna:CA:5~1534 1686,1689,1700~1704,1832,1836~
    1837,1846,1848,1912~1913,1916,
    1919~1920,1947~1948,1950,1959~
    1961
    rna:DB:2~118 861~864,915,917~919,958
    3291 4v7u:DB
    (3.1Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000366A67 RF00001 Escherichia
    coli
    K-12
    83333    		 20876128 Assembly2
    rna:DA:1~2903 78~80,89,96~97,99~100
    3292 4v7v:AA
    (3.2891Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E246 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 20876128 Assembly1
    rna:BA:1~2903 702,784,899,1407~1409,1418~142
    0,1429,1473~1475,1483~1484,149
    1~1492,1494~1496,1517
    3293 4v7v:BA
    (3.2891Å)
    		 2854 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 20876128 Assembly1
    rna:AA:2~1534 1689,1700~1703,1832,1837,1846~
    1847,1912~1913,1915,1919~1920,
    1947~1950,1959~1960
    rna:BB:2~119 861~864,915,917~919,958
    3294 4v7v:BB
    (3.2891Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000366A67 RF00001 Escherichia
    coli
    K-12
    83333    		 20876128 Assembly1
    rna:BA:1~2903 78~81,89~90,96~97,99~100
    3295 4v7v:CA
    (3.2891Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E24C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 20876128 Assembly2
    rna:DA:1~2903 702,783~784,899,1407~1409,1418
    ,1428~1429,1473~1475,1483~1484
    ,1492~1496,1517
    3296 4v7v:DA
    (3.2891Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 20876128 Assembly2
    rna:CA:5~1534 1686,1689,1701~1703,1832,1836~
    1837,1846,1848,1912~1913,1915~
    1916,1919~1920,1947~1948,1959~
    1960
    rna:DB:2~118 861~864,915~919,958
    3297 4v7v:DB
    (3.2891Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DF7E RF00001 Escherichia
    coli
    K-12
    83333    		 20876128 Assembly2
    rna:DA:1~2903 78~81,89~90,96~97,99~100
    3298 4v7w:AA
    (3.0Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 20876130 Assembly1
    rna:BA:6~2897 702,783~784,899,1407~1409,1418
    ,1429,1474,1483~1485,1493~1496
    ,1517
    3299 4v7w:BA
    (3.0Å)
    		 2725 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25D RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 20876130 Assembly1
    rna:AA:5~1531 1701,1703,1832,1836~1837,1846,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1948,1959~1961
    rna:BB:1~119 861~864,915,917~919
    3300 4v7w:BB
    (3.0Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 20876130 Assembly1
    rna:BA:6~2897 78~81,88,97~98,100~101
    << < 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.