SEQ2FUN

FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    3401 4v8d:AA
    (3.0Å)
    		 1502 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEDF RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 22437501 Assembly1
    rna:AB:1~85 530~531,1054,1493
    rna:AC:1~77 790,966,1229~1230,1338~1340,14
    00
    rna:A1:10~25 926~927,1196,1397,1400~1401,14
    92~1493,1498,1503,1505
    rna:BA:1~2902 702,784,899~900,1407~1409,1418
    ,1429,1443,1473~1474,1483~1484
    ,1494~1496,1517
    3402 4v8d:AB
    (3.0Å)
    		 85 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002D9DE2 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 22437501 Assembly1
    rna:AA:5~1529 35~38
    rna:A1:10~25 35~38
    rna:BA:1~2902 18,38~39,65,72,83~85
    3403 4v8d:AC
    (3.0Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 22437501 Assembly1
    rna:AA:5~1529 31~33,35,39,41~42
    rna:AD:1~85 40~41
    rna:A1:10~25 35~38
    rna:BA:1~2902 2~3,11~13,25~26,75~77
    3404 4v8d:AD
    (3.0Å)
    		 85 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002D9DE2 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 22437501 Assembly1
    rna:AC:1~77 36~37
    rna:BA:1~2902 18,65,80~81,85
    3405 4v8d:BA
    (3.0Å)
    		 2912 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E23D RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 22437501 Assembly1
    rna:AA:5~1529 1701~1704,1832,1836~1837,1846,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1948,1959~1961,2863~
    2864
    rna:AB:1~85 883,897,1913,2482,2506~2507,25
    53,2555,2583,2585,2602
    rna:AC:1~77 1907~1909,1922~1924,2251~2253,
    2255,2450~2451,2601~2602
    rna:AD:1~85 1851,2112,2169,2394~2395,2421~
    2422,2432
    rna:BB:1M~119 861~863,915,917~919,958
    3406 4v8d:BB
    (3.0Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 22437501 Assembly1
    rna:BA:1~2902 78~80,89A,96~97,99~100
    3407 4v8d:C1
    (3.0Å)
    		 16 N/A N/A N/A N/A 22437501 Assembly2
    rna:CA:5~1529 12~13,15~20,22~23
    rna:CB:1~85 19~22
    rna:CC:1~77 16~18
    3408 4v8d:CA
    (3.0Å)
    		 1502 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEDF RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 22437501 Assembly2
    rna:CB:1~85 530,1054,1493
    rna:CC:1~77 790,966,1229~1230,1338~1340,14
    00
    rna:C1:10~25 926,1196,1397,1400~1402,1492~1
    493,1498,1503,1505,1507
    rna:DA:1~2902 702,783~784,899~900,1407~1409,
    1418,1429,1473~1474,1483~1484,
    1494~1496,1517
    3409 4v8d:CB
    (3.0Å)
    		 85 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002D9DE2 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 22437501 Assembly2
    rna:CA:5~1529 35~38
    rna:C1:10~25 35~38
    rna:DA:1~2902 18~19,38~39,72,83~85
    3410 4v8d:CC
    (3.0Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 22437501 Assembly2
    rna:CA:5~1529 30~33,35,39~42
    rna:CD:1~85 40~41
    rna:C1:10~25 35~38
    rna:DA:1~2902 2~3,11~13,25~26,75~77
    3411 4v8d:CD
    (3.0Å)
    		 85 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002D9DE2 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 22437501 Assembly2
    rna:CC:1~77 36~37
    rna:DA:1~2902 18,65,80,85
    3412 4v8d:DA
    (3.0Å)
    		 2907 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E23D RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 22437501 Assembly2
    rna:CA:5~1529 1700~1704,1832,1836~1837,1846,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1948,1959~1961
    rna:CB:1~85 882,897,1913,2482~2483,2507~25
    08,2553,2555,2573,2583~2585
    rna:CC:1~77 1907~1909,1922~1924,2064,2251~
    2253,2255,2450~2451,2602
    rna:CD:1~85 1851,2112,2169,2394~2395,2421~
    2422,2432
    rna:DB:1M~119 861~864,915,917~919,958,1026
    3413 4v8d:DB
    (3.0Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 22437501 Assembly2
    rna:DA:1~2902 78~81,88,89A,96~97,99~100
    3414 4v8e:AA
    (3.3Å)
    		 2912 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E23D RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 22437501 Assembly1
    rna:AB:1M~119 861~864,915,917~918,958
    rna:BA:5~1529 1700~1704,1832,1836~1837,1846,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1948,1950,1959~1961,
    2863~2864
    rna:BB:1~85 883,897,1913,1942,2482,2506~25
    07,2553~2555,2583~2585,2602
    rna:BC:1~77 1907~1909,1922~1924,2064,2251~
    2253,2255,2450~2451,2601~2602
    rna:BD:1~85 1851~1852,2112,2169,2394~2395,
    2421~2422,2432
    3415 4v8e:AB
    (3.3Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 22437501 Assembly1
    rna:AA:1~2902 78~81,89A,97,99~101
    3416 4v8e:B1
    (3.3Å)
    		 16 N/A N/A N/A N/A 22437501 Assembly1
    rna:BA:5~1529 12~13,15~20,23
    rna:BB:1~85 19~22
    rna:BC:1~77 16~18
    3417 4v8e:BA
    (3.3Å)
    		 1502 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEDF RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 22437501 Assembly1
    rna:AA:1~2902 702,784,899,1407~1409,1418,142
    0,1429,1443,1473~1475,1483~148
    4,1494~1496,1517
    rna:BB:1~85 530,1054,1493
    rna:BC:1~77 790,966,1229~1230,1338~1340,14
    00
    rna:B1:10~25 530,926,1196,1400~1401,1492~14
    93,1498,1503,1505
    3418 4v8e:BB
    (3.3Å)
    		 85 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002D9DE2 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 22437501 Assembly1
    rna:AA:1~2902 18,38~39,65,72,81,83~85
    rna:BA:5~1529 35~38
    rna:B1:10~25 35~38
    3419 4v8e:BC
    (3.3Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 22437501 Assembly1
    rna:AA:1~2902 11~13,25~26,75~77
    rna:BA:5~1529 31~33,35,39~42
    rna:BD:1~85 40~41
    rna:B1:10~25 35~38
    3420 4v8e:BD
    (3.3Å)
    		 85 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002D9DE2 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 22437501 Assembly1
    rna:AA:1~2902 18,80~81,85
    rna:BC:1~77 36~37
    3421 4v8e:CA
    (3.3Å)
    		 2907 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E23D RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 22437501 Assembly2
    rna:CB:1~122 909~912,962~966,1004,1073
    rna:DA:5~1529 1749~1752,1864,1868~1869,1878,
    1880,1935~1936,1938~1939,1942~
    1943,1970~1971,1982~1984
    rna:DB:1~85 1936,1965,2495~2496,2519~2520,
    2566,2568,2596~2597
    rna:DC:1~77 1930~1932,1945~1947,2087,2264~
    2266,2463~2464,2614~2615
    rna:DD:1~85 1883~1884,2135,2192,2407~2408,
    2434~2435,2445
    3422 4v8e:CB
    (3.3Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 22437501 Assembly2
    rna:CA:1~2912 80~83,90,92,100,102~103
    3423 4v8e:D1
    (3.3Å)
    		 16 N/A N/A N/A N/A 22437501 Assembly2
    rna:DA:5~1529 12~13,15~23
    rna:DB:1~85 19~22
    rna:DC:1~77 16~18
    3424 4v8e:DA
    (3.3Å)
    		 1502 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEDF RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 22437501 Assembly2
    rna:CA:1~2912 702,783~784,899,1407~1409,1418
    ,1429~1430,1473~1474,1483~1484
    ,1493~1496,1517
    rna:DB:1~85 1054,1493
    rna:DC:1~77 790,966,1229~1230,1338~1340,14
    00
    rna:D1:10~25 530,926,1196,1397,1400~1402,14
    92~1493,1498,1503,1505
    3425 4v8e:DB
    (3.3Å)
    		 85 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002D9DE2 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 22437501 Assembly2
    rna:CA:1~2912 38~39,72,81,83~85
    rna:DA:5~1529 35,37~38
    rna:D1:10~25 35~38
    3426 4v8e:DC
    (3.3Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 22437501 Assembly2
    rna:CA:1~2912 11~13,25~26,75~77
    rna:DA:5~1529 31~33,35,39~42
    rna:DD:1~85 40~41
    rna:D1:10~25 35~38
    3427 4v8e:DD
    (3.3Å)
    		 85 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002D9DE2 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 22437501 Assembly2
    rna:CA:1~2912 18,65,80~81,85
    3428 4v8f:AA
    (3.3Å)
    		 2912 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E23D RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 22437501 Assembly1
    rna:AB:1M~119 861~864,915,917~918,958
    rna:BA:5~1529 1701~1704,1832,1836~1837,1846,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1948,1959~1961,2863~
    2864
    rna:BB:1~85 897,1913,2483,2506~2507,2555,2
    583~2585,2602
    rna:BC:1~77 1907~1909,1922~1924,2064,2251~
    2253,2255,2450~2451,2601~2602
    rna:BD:1~85 1851,2112,2169,2394~2395,2421~
    2422,2432
    3429 4v8f:AB
    (3.3Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 22437501 Assembly1
    rna:AA:1~2902 78~81,89A,97,99~100
    3430 4v8f:B1
    (3.3Å)
    		 16 N/A N/A N/A N/A 22437501 Assembly1
    rna:BA:5~1529 12~13,15~23
    rna:BB:1~85 19~22
    rna:BC:1~77 16~18
    3431 4v8f:BA
    (3.3Å)
    		 1502 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEDF RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 22437501 Assembly1
    rna:AA:1~2902 702,784,899,1407~1409,1418,142
    9,1443,1473~1474,1483~1484,149
    4~1496,1517
    rna:BB:1~85 530~531,1054,1493
    rna:BC:1~77 790,966,1229~1230,1338~1340,14
    00
    rna:B1:10~25 530,926~927,1196,1397,1400~140
    1,1492~1493,1498,1503,1505
    3432 4v8f:BB
    (3.3Å)
    		 85 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002D9DE2 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 22437501 Assembly1
    rna:AA:1~2902 18,38~39,65,72,83~85
    rna:BA:5~1529 35~38
    rna:B1:10~25 35~38
    3433 4v8f:BC
    (3.3Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 22437501 Assembly1
    rna:AA:1~2902 2,11~13,25~26,75~77
    rna:BA:5~1529 31~33,35,39,41~42
    rna:BD:1~85 40~41
    rna:B1:10~25 35~38
    3434 4v8f:BD
    (3.3Å)
    		 85 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002D9DE2 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 22437501 Assembly1
    rna:AA:1~2902 18,65,80~81,85
    3435 4v8f:C1
    (3.3Å)
    		 16 N/A N/A N/A N/A 22437501 Assembly2
    rna:CA:5~1529 12~13,15~20,23
    rna:CB:1~85 19~22
    rna:CC:1~77 16~18
    3436 4v8f:CA
    (3.3Å)
    		 1502 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEDF RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 22437501 Assembly2
    rna:CB:1~85 530,1054,1493
    rna:CC:1~77 790,966,1229~1230,1338~1340,14
    00
    rna:C1:10~25 530,926,1196,1400~1402,1493,14
    98,1503,1505
    rna:DA:1~2902 702,783~784,899,1407~1409,1418
    ,1429,1473~1475,1483~1484,1493
    ~1496,1517
    3437 4v8f:CB
    (3.3Å)
    		 85 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002D9DE2 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 22437501 Assembly2
    rna:CA:5~1529 35~38
    rna:C1:10~25 35~38
    rna:DA:1~2902 18~19,83~85
    3438 4v8f:CC
    (3.3Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 22437501 Assembly2
    rna:CA:5~1529 31~32,35,39~42
    rna:CD:1~85 40~41
    rna:C1:10~25 35~38
    rna:DA:1~2902 2,11~13,25~26,75~77
    3439 4v8f:CD
    (3.3Å)
    		 85 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002D9DE2 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 22437501 Assembly2
    rna:DA:1~2902 18,65,80~81,85
    3440 4v8f:DA
    (3.3Å)
    		 2907 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E23D RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 22437501 Assembly2
    rna:CA:5~1529 1701~1704,1832,1836~1837,1846,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1949,1959~1961
    rna:CB:1~85 882,897,2506~2507,2553,2555,25
    83~2585,2602
    rna:CC:1~77 1907~1909,1922~1924,2064,2251~
    2253,2255,2450~2451,2601~2602
    rna:CD:1~85 1851,2112,2169,2394~2395,2421~
    2422
    rna:DB:1M~119 861~864,915~919,958
    3441 4v8f:DB
    (3.3Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 22437501 Assembly2
    rna:DA:1~2902 78~81,89A,97,99~100
    3442 4v8g:AA
    (3.0Å)
    		 1505 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 22605777 Assembly1
    rna:BA:6~2897 702,784,899,1407~1409,1418,142
    9,1474,1483~1485,1492~1496,151
    7
    3443 4v8g:BA
    (3.0Å)
    		 2809 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 22605777 Assembly1
    rna:AA:2~1533 1701,1703~1704,1832,1837,1846,
    1848,1912~1913,1916,1919~1920,
    1947~1948,1959~1961
    rna:BB:1~120 861~864,917~919,958
    3444 4v8g:BB
    (3.0Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 22605777 Assembly1
    rna:BA:6~2897 78~81,90,97~98,100~101
    3445 4v8g:CA
    (3.0Å)
    		 1501 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 22605777 Assembly2
    rna:DA:6~2897 702,784,899,1407~1409,1418,142
    9,1474,1483~1484,1492~1496,151
    7
    3446 4v8g:DA
    (3.0Å)
    		 2814 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 22605777 Assembly2
    rna:CA:4~1533 1700~1701,1703~1704,1832,1836~
    1837,1846,1848,1895,1912~1913,
    1916,1919~1920,1947~1948,1959~
    1961
    rna:DB:1~120 861~864,916~919,958
    3447 4v8g:DB
    (3.0Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 22605777 Assembly2
    rna:DA:6~2897 78~81,90,97~98,100~101
    3448 4v8h:AA
    (3.1Å)
    		 1501 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 22605777 Assembly1
    rna:BA:6~2897 702,784,899,1407~1409,1418,142
    0,1429,1473~1474,1483~1484,149
    2~1496,1517
    3449 4v8h:BA
    (3.1Å)
    		 2837 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E314 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 22605777 Assembly1
    rna:AA:4~1530 1701~1704,1832,1836~1837,1846,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1948,1950,1959~1961
    rna:BB:1~120 861~864,915,917~919,958
    3450 4v8h:BB
    (3.1Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 22605777 Assembly1
    rna:BA:6~2897 78~81,90,97~98,100~102
    3451 4v8h:CA
    (3.1Å)
    		 1497 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 22605777 Assembly2
    rna:DA:6~2892 702,784,899,1407~1409,1418,142
    9~1430,1473~1475,1483~1484,149
    2,1494~1496,1517
    3452 4v8h:DA
    (3.1Å)
    		 2814 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E314 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 22605777 Assembly2
    rna:CA:4~1530 1689,1700~1704,1832,1836~1837,
    1846,1848,1895,1912~1913,1915~
    1916,1919~1920,1947~1948,1959~
    1961
    rna:DB:1~120 861~864,915,917~919,958
    3453 4v8h:DB
    (3.1Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 22605777 Assembly2
    rna:DA:6~2892 78~81,90,97~98,100~102
    3454 4v8i:AA
    (2.7Å)
    		 1493 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 22605777 Assembly1
    rna:BA:6~2897 702,783~784,899,1407~1409,1418
    ,1420,1429,1475,1483~1484,1491
    ~1496,1517
    3455 4v8i:BA
    (2.7Å)
    		 2827 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    274    		 22605777 Assembly1
    rna:AA:3~1531 1703~1704,1832,1836~1837,1846,
    1848,1912~1916,1919~1920,1947~
    1948,1950,1959~1961
    rna:BB:1~120 861~864,915,917~919,958
    3456 4v8i:BB
    (2.7Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    274    		 22605777 Assembly1
    rna:BA:6~2897 78~81,90,97~98,100~101
    3457 4v8i:CA
    (2.7Å)
    		 1491 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 22605777 Assembly2
    rna:DA:6~2897 702,783~784,899~900,1407~1409,
    1418,1429~1430,1473~1475,1483~
    1484,1491~1496,1517
    3458 4v8i:DA
    (2.7Å)
    		 2798 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    274    		 22605777 Assembly2
    rna:CA:4~1530 1689,1700~1704,1832,1836~1837,
    1846,1848,1895,1912~1916,1919~
    1920,1947~1948,1959~1961
    rna:DB:1~120 861~864,915,917~919,958
    3459 4v8i:DB
    (2.7Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    274    		 22605777 Assembly2
    rna:DA:6~2897 78~81,90,97~98,100~102
    3460 4v8j:AA
    (3.9Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E130 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23630274 Assembly1
    rna:AW:1~76 676~677,1321
    rna:AV:1~77 773,943,1210~1211,1319~1321,13
    82
    rna:AY:27~43 513,1036,1470
    rna:AX:15~22 513,903,1379,1382~1384,1469~14
    70,1475,1482
    rna:BA:6~2897 685,766~767,876~877,1389~1391,
    1400,1411~1412,1425,1450~1452,
    1460~1462,1470~1473,1494
    3461 4v8j:AV
    (3.9Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 23630274 Assembly1
    rna:AA:5~1508 31~32,35,39,41~42
    rna:AW:1~76 40~41
    rna:AX:15~22 35~38
    rna:BA:6~2897 2,11~13,25~26,75~77
    3462 4v8j:AW
    (3.9Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 23630274 Assembly1
    rna:AA:5~1508 35,37~38
    rna:BA:6~2897 17,19,56,72,76
    3463 4v8j:AY
    (3.9Å)
    		 17 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 23630274 Assembly1
    rna:AA:5~1508 34~37
    rna:AX:15~22 34~37
    3464 4v8j:BA
    (3.9Å)
    		 2803 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFFB RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 23630274 Assembly1
    rna:AA:5~1508 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1949,1959~1961,
    2863~2864
    rna:AW:1~76 1851,2112,2169,2180~2181,2394~
    2395,2421~2422,2432
    rna:AV:1~77 1907~1909,1922~1924,2251~2253,
    2255,2439,2450~2451,2585,2601~
    2602
    rna:BB:1~119 861~863,915,917~919,1026~1027
    3465 4v8j:BB
    (3.9Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 23630274 Assembly1
    rna:BA:6~2897 78~81,88,97~98,100~101
    3466 4v8j:CA
    (3.9Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E130 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23630274 Assembly2
    rna:CV:1~77 773,1210~1211,1319~1322,1382
    rna:CY:27~43 513~514,1036,1470
    rna:CX:13~22 513,903,1379,1382~1383,1469~14
    70,1475,1482
    rna:DA:6~2897 685,766~767,876~877,1389~1391,
    1400,1411~1412,1425,1450~1452,
    1460~1462,1470~1473,1494
    3467 4v8j:CV
    (3.9Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 23630274 Assembly2
    rna:CA:5~1507 30~33,35,39~42
    rna:CW:1~76 40~41
    rna:CX:13~22 35~38
    rna:DA:6~2897 3,11~13,25~26,75~77
    3468 4v8j:CW
    (3.9Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 23630274 Assembly2
    rna:CA:5~1507 37~38
    rna:CX:13~22 34~35
    rna:DA:6~2897 17,19,72,76
    3469 4v8j:CX
    (3.9Å)
    		 10 N/A N/A N/A N/A 23630274 Assembly2
    rna:CA:5~1507 15~22
    rna:CW:1~76 13~14
    rna:CV:1~77 16,18
    rna:CY:27~43 19~22
    3470 4v8j:CY
    (3.9Å)
    		 17 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 23630274 Assembly2
    rna:CA:5~1507 34~37
    rna:CX:13~22 34~37
    rna:DA:6~2897 37~38
    3471 4v8j:DA
    (3.9Å)
    		 2803 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFFB RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 23630274 Assembly2
    rna:CA:5~1507 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1948,1959~1961,
    2863~2864
    rna:CW:1~76 2112,2180,2394~2395,2421~2422,
    2432
    rna:CV:1~77 1907~1909,1922~1924,2063,2251~
    2253,2255,2450~2451,2585,2602
    rna:DB:1~119 861~863,917~919,958,1026
    3472 4v8j:DB
    (3.9Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 23630274 Assembly2
    rna:DA:6~2897 78~81,88,90,98,100~101
    3473 4v8m:AA
    (5.57Å)
    		 2227 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003D1DA0 RF01960
    RF01959
    RF00177    		 Trypanosoma
    brucei
    5691    		 23395961 Assembly1
    rna:BA:1~1847 702~703,1221
    rna:BB:1~1548 1162,2111~2114,2197~2198,2208~
    2210,2231~2232
    rna:AB:1~73 2043~2045
    3474 4v8m:AB
    (5.57Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000035465A RF00005 Trypanosoma
    brucei
    5691    		 23395961 Assembly1
    rna:BB:1~1548 3,16~19,56~57,71~72
    rna:AA:1~2251 34~36
    3475 4v8m:BA
    (5.57Å)
    		 1847 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DED1 RF02543
    RF02540    		 Trypanosoma
    brucei
    5691    		 23395961 Assembly1
    rna:BB:1~1548 38~40,68,338,346,353,366,368~3
    75,487~489,711~712,718~728,791
    ~793,870~871,875~877,905~906,9
    17~918,929,959~960,964,968,970
    ,972~973,977~978,980~986,989~9
    90,995,999,1007,1012,1014~1018
    ,1020,1023~1024,1036,1038,1054
    ~1061,1066,1097~1099,1151~1152
    ,1158~1160,1162,1229,1238,1241
    ~1249,1263~1264,1318,1321~1322
    ,1420~1426,1428~1429,1586,1593
    ~1605,1607,1643~1662,1673,1675
    ~1676,1681,1689~1692,1694~1696
    ,1711~1712,1719,1741~1742,1784
    ~1785,1795~1797,1822~1823,1825
    ,1837~1841,1843~1847
    rna:BC:1~169 2~20,56,139~140,190,297,395~40
    2,404~407,409~411,414,416,433~
    434,464,470~474,476~482,484~48
    6,501,731,1544,1548,1564,1569~
    1570,1727,1802,1840~1842
    rna:BD:1~119 1100~1102,1156,1158~1160,1269~
    1270,1319,1321
    rna:BE:1~210 924~925,937~938,955,1700~1701,
    1732,1744,1781~1784,1807~1808,
    1813~1817,1834~1835,1846
    rna:BF:1~73 514~516,551~552,688~690
    rna:BG:1~182 231,237~239,483,1306,1342~1344
    ,1564,1605,1645
    rna:AA:1~2251 945~946
    3476 4v8m:BB
    (5.57Å)
    		 1465 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDF3 RF02543
    RF02540    		 Trypanosoma
    brucei
    5691    		 23395961 Assembly1
    rna:BA:1~1847 1~3,5~12,14~21,23~26,29~34,37~
    42,49~50,54~61,63~64,76,92,400
    ~403,405~407,410~411,415,434~4
    36,443,489~491,591,613~614,620
    ~631,634~635,637~642,645~646,6
    48,651~653,664,669,677~678,681
    ~682,789,1046,1048,1059,1063~1
    065,1079~1080,1083~1085,1088~1
    090,1093,1166,1168,1175~1176,1
    211,1228~1229,1232~1234,1236~1
    243,1245,1257~1261,1267,1269~1
    270,1272~1273,1275,1283~1284,1
    286,1290,1292~1293,1313~1318,1
    321~1323,1326~1330,1342~1345,1
    396~1397,1408,1415~1416,1437~1
    439,1441~1442
    rna:BC:1~169 10,15,653,1452~1453
    rna:BE:1~210 4~6,43,993~994,1004
    rna:BF:1~73 1458~1459,1461~1463,1471
    rna:BG:1~182 45,53~54,79~81,384~385,608~609
    ,611,652~653,1349~1352,1358~13
    60,1366~1368,1370,1391,1452~14
    54,1459,1461~1465
    rna:BH:1~135 70,126~127,616~617,656~657,144
    9~1451,1533~1536
    rna:AA:1~2251 475~476,522,524~527,529~531,55
    8,570
    rna:AB:1~73 478~480,502~503,719~721,729,75
    1~752,762
    3477 4v8m:BC
    (5.57Å)
    		 169 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000017D41D RF00002 Trypanosoma
    brucei
    5691    		 23395961 Assembly1
    rna:BA:1~1847 3~21,23~37,40~41,52~54,103,105
    ,109,125~126,140,149~156,158,1
    60~164,166~169
    rna:BB:1~1548 1~2,112,124~125
    3478 4v8m:BD
    (5.57Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000020E902 RF00001 Trypanosoma
    brucei
    5691    		 23395961 Assembly1
    rna:BA:1~1847 77~80,83,87~89,98~102
    3479 4v8m:BE
    (5.57Å)
    		 210 N/A URS000080E0E9 N/A Trypanosoma
    brucei
    5691    		 23395961
    M193_0.6    		 Assembly1
    rna:BA:1~1847 10~11,16,26~27,65~67,110~113,1
    43,145~146,160~161,191~194,204
    ~205,207~209
    rna:BB:1~1548 10~11,13,16~17,41,200~203,210
    rna:BG:1~182 52~53,55~56,58
    3480 4v8m:BF
    (5.57Å)
    		 73 N/A URS000080E2E5 N/A Trypanosoma
    brucei
    5691    		 23395961 Assembly1
    rna:BA:1~1847 1~4,40
    rna:BB:1~1548 11,14,16~17,21
    rna:BG:1~182 11~12
    3481 4v8m:BG
    (5.57Å)
    		 182 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00006089EF RF02543
    RF02540    		 Trypanosoma
    brucei
    5691    		 23395961 Assembly1
    rna:BA:1~1847 12~17,104~106,133,144~145
    rna:BB:1~1548 1~2,23~25,42~43,52~54,57~60,81
    ~84,90~94,104~105,108~110,117~
    119,121,133~135,157~160,171~17
    5
    rna:BE:1~210 97~99
    rna:BF:1~73 3,22~23
    rna:BH:1~135 24,85,87~89,101,112~113,180
    3482 4v8m:BH
    (5.57Å)
    		 135 N/A URS000080DEE2 N/A Trypanosoma
    brucei
    5691    		 23395961 Assembly1
    rna:BB:1~1548 15~18,27,74,102,121~122
    rna:BG:1~182 2,40~41,44,116,135
    3483 4v8n:AA
    (3.1Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23542153 Assembly1
    rna:AV:1~78 790,966,1229~1230,1338~1340,14
    00
    rna:AX:13~24 530,693,926,1196,1397,1400,149
    2~1493,1498
    rna:AY:1~78 530~531,1054,1493
    rna:BA:6~2897 702,784,899,1407~1410,1418~142
    0,1429,1442A,1473~1475,1483~14
    84,1494~1496,1517
    3484 4v8n:AV
    (3.1Å)
    		 78 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E382 RF00005 Haloarcula
    marismortui
    2238    		 23542153 Assembly1
    rna:AA:5~1531 32~34,36,40~43
    rna:AX:13~24 36~39
    rna:BA:6~2897 12,27,76~78
    3485 4v8n:AW
    (3.1Å)
    		 78 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E067 RF00005 Haloarcula
    marismortui
    2238    		 23542153 Assembly1
    rna:BA:6~2897 20~21,58,73,78
    3486 4v8n:AX
    (3.1Å)
    		 12 N/A N/A N/A Escherichia
    coli
    562    		 23542153 Assembly1
    rna:AA:5~1531 13,15~21,23
    rna:AV:1~78 16~18
    rna:AY:1~78 19~23
    3487 4v8n:AY
    (3.1Å)
    		 78 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E382 RF00005 Haloarcula
    marismortui
    2238    		 23542153 Assembly1
    rna:AA:5~1531 36~39
    rna:AX:13~24 36~39
    rna:BA:6~2897 12,20~21,65,77~78
    3488 4v8n:BA
    (3.1Å)
    		 2848 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E0F3 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 23542153 Assembly1
    rna:AA:5~1531 1700~1704,1832,1837,1846,1848,
    1912~1916,1919~1920,1947~1950,
    1959~1961,2864
    rna:AV:1~78 1908,1923,2064,2251~2253,2450~
    2451,2601~2602
    rna:AW:1~78 1851,2112,2169,2394~2395,2421~
    2422,2432
    rna:AY:1~78 882,897~898,1915~1916,2483,250
    6~2507,2553,2583~2585
    rna:BB:1~119 861~863,917~918,958
    3489 4v8n:BB
    (3.1Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 23542153 Assembly1
    rna:BA:6~2897 78~80,90~91,98,100~101
    3490 4v8n:CA
    (3.1Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23542153 Assembly2
    rna:CV:1~78 790,966,1229~1230,1338~1340,14
    00
    rna:CX:13~24 530,693,926,1196,1397,1492~149
    3,1498
    rna:DA:6~2897 702,784,899,1407~1409,1418,142
    9,1442A,1474~1475,1483~1484,14
    94~1496,1517
    3491 4v8n:CV
    (3.1Å)
    		 78 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E382 RF00005 Haloarcula
    marismortui
    2238    		 23542153 Assembly2
    rna:CA:5~1531 32~34,36,40,42
    rna:CX:13~24 36~39
    rna:DA:6~2897 12,27,76~78
    3492 4v8n:CW
    (3.1Å)
    		 78 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E067 RF00005 Haloarcula
    marismortui
    2238    		 23542153 Assembly2
    rna:DA:6~2897 20,58,73,78
    3493 4v8n:CX
    (3.1Å)
    		 12 N/A N/A N/A Escherichia
    coli
    562    		 23542153 Assembly2
    rna:CA:5~1531 13,16~17,19~23
    rna:CV:1~78 16~18
    rna:CY:1~78 19~23
    3494 4v8n:CY
    (3.1Å)
    		 78 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E382 RF00005 Haloarcula
    marismortui
    2238    		 23542153 Assembly2
    rna:CX:13~24 36~39
    rna:DA:6~2897 12,20~21,65,77~78
    3495 4v8n:DA
    (3.1Å)
    		 2848 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E0F3 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 23542153 Assembly2
    rna:CA:5~1531 1700~1701,1703~1704,1832,1837,
    1846,1848,1895,1912~1916,1919~
    1920,1947~1948,1959~1961,2864
    rna:CV:1~78 1908,1922~1923,2064,2251~2253,
    2450~2451,2601~2602
    rna:CW:1~78 1851,2169,2394~2395,2421~2422,
    2432
    rna:CY:1~78 882,897~898,1915~1916,2483,250
    6~2507,2553,2583~2585
    rna:DB:1~119 861~864,915,917~919,958
    3496 4v8n:DB
    (3.1Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 23542153 Assembly2
    rna:DA:6~2897 78~81,90~91,97~98,100~101
    3497 4v8o:AA
    (3.8Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 21903932 Assembly1
    rna:AV:1~76 790,966,1229~1230,1338~1341,14
    00
    rna:AX:11~19 693,926~927,1400~1403,1498,150
    3,1506
    rna:BA:6~2897 702,1408~1409,1418,1475,1483~1
    485,1493~1496
    3498 4v8o:AV
    (3.8Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    K-12
    83333    		 21903932 Assembly1
    rna:AA:5~1531 30~32,34,38,41
    rna:AX:11~19 34~37
    rna:BA:6~2897 3,71~72,76
    3499 4v8o:BA
    (3.8Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E1F7 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 21903932 Assembly1
    rna:AA:5~1531 1689,1846~1847,1912~1913,1916,
    1919~1920,1947,1959~1962
    rna:AV:1~76 1851~1852,2394~2395,2421~2422,
    2432
    rna:BB:1~119 861~863,915~920
    3500 4v8o:BB
    (3.8Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 21903932 Assembly1
    rna:BA:6~2897 78~81,97~98,100~101
    << < 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.