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FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    3501 4v8p:A1
    (3.52Å)
    		 3119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000059BB66 RF02540
    RF02543    		 Tetrahymena
    thermophila
    5911    		 22052974 Assembly1
    rna:B2:1~154 2~21,24,57,143~144,183,329~336
    ,338~341,343~345,348,350,367~3
    68,401~416,651~652,680~681,716
    ,1420~1421,1424~1425,1445~1446
    ,1467,1556,1609~1610,1643~1644
    ,1851~1852,1855~1856,2381~2382
    ,2982~2984,3132,3242~3243
    rna:B3:1~120 1022~1024,1027,1078~1082,1183,
    1198,1224,1229~1230
    3502 4v8p:B2
    (3.52Å)
    		 154 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003890D2 RF00002 Tetrahymena
    thermophila
    5911    		 22052974 Assembly1
    rna:A1:1~3352 2~4,6~25,27~36,38~40,43~44,55~
    57,71,105,110~111,114~115,125~
    127,135~147,149~154
    3503 4v8p:B3
    (3.52Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000057A4D1 RF00001 Tetrahymena
    thermophila
    5911    		 22052974 Assembly1
    rna:A1:1~3352 77~80,84,88,98,100~104
    3504 4v8p:C2
    (3.52Å)
    		 154 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003890D2 RF00002 Tetrahymena
    thermophila
    5911    		 22052974 Assembly2
    rna:D1:1~3352 2~4,6~25,27~36,38~40,43~44,55~
    57,71,94,105,110~111,114~115,1
    25~127,135~147,149~154
    3505 4v8p:C3
    (3.52Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000057A4D1 RF00001 Tetrahymena
    thermophila
    5911    		 22052974 Assembly2
    rna:D1:1~3352 77~80,84,88,98,100~103
    3506 4v8p:D1
    (3.52Å)
    		 3119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000059BB66 RF02540
    RF02543    		 Tetrahymena
    thermophila
    5911    		 22052974 Assembly2
    rna:C2:1~154 2~21,24,57,143~144,183,329~336
    ,338~341,343~345,348,350,367~3
    68,401~416,651~652,680~681,716
    ,1420~1421,1424~1425,1445,1467
    ,1556,1609~1610,1643~1644,1851
    ~1852,1855~1856,2381~2382,2983
    ~2984,3132,3242~3243
    rna:C3:1~120 1022~1024,1026~1027,1078~1082,
    1183,1198,1224,1229~1230
    3507 4v8p:E2
    (3.52Å)
    		 154 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003890D2 RF00002 Tetrahymena
    thermophila
    5911    		 22052974 Assembly3
    rna:F1:1~3352 2~4,6~25,27~36,38~40,43~44,56~
    57,71,105,110~111,114~115,125~
    127,135~147,149~154
    3508 4v8p:E3
    (3.52Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000057A4D1 RF00001 Tetrahymena
    thermophila
    5911    		 22052974 Assembly3
    rna:F1:1~3352 77~80,84,88,98,100~101,103~104
    3509 4v8p:F1
    (3.52Å)
    		 3119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000059BB66 RF02540
    RF02543    		 Tetrahymena
    thermophila
    5911    		 22052974 Assembly3
    rna:E2:1~154 2~21,24,57,143~144,183,329~336
    ,338~341,343~345,348,350,367~3
    68,401~416,651~652,680~681,716
    ,1420~1421,1424~1425,1445~1446
    ,1467,1556,1609~1610,1643~1644
    ,1851~1852,1855~1856,2381~2382
    ,2983~2984,3132,3242~3243
    rna:E3:1~120 1022~1024,1027,1078,1080~1082,
    1183,1198,1224,1229~1230
    3510 4v8p:G2
    (3.52Å)
    		 154 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003890D2 RF00002 Tetrahymena
    thermophila
    5911    		 22052974 Assembly4
    rna:H1:1~3352 2~4,6~25,27~36,38~40,43~44,55~
    57,71,94,105,110~111,114~115,1
    25~127,135~147,149~154
    3511 4v8p:G3
    (3.52Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000057A4D1 RF00001 Tetrahymena
    thermophila
    5911    		 22052974 Assembly4
    rna:H1:1~3352 77~80,84,88,98,100~103
    3512 4v8p:H1
    (3.52Å)
    		 3119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000059BB66 RF02540
    RF02543    		 Tetrahymena
    thermophila
    5911    		 22052974 Assembly4
    rna:G2:1~154 2~21,24,57,143~144,183,329~336
    ,338~341,343~345,348,350,367~3
    68,401~416,651~652,680~681,716
    ,1420~1421,1424~1425,1445,1467
    ,1556,1609~1610,1643~1644,1851
    ~1852,1855~1856,2381~2382,2982
    ~2984,3132,3242~3243
    rna:G3:1~120 1022~1024,1026~1027,1078,1080~
    1082,1183,1198,1224,1229~1230
    3513 4v8q:AA
    (3.1Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DD86 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 22422985 Assembly1
    rna:AB:1~119 861~864,915~919,958
    rna:BA:5~1531 1689,1703~1704,1832,1836~1837,
    1846,1848,1895,1912~1916,1919~
    1920,1947~1948,1959~1961,2863~
    2864
    rna:BV:1~77 1907~1909,1922~1924,2251~2253,
    2255,2450~2451,2602
    rna:BW:1~77 1851,2112,2120~2121,2169,2422,
    2432
    rna:BY:1~90 1066~1067
    3514 4v8q:AB
    (3.1Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 22422985 Assembly1
    rna:AA:6~2897 78~81,90,97~98,100~101
    3515 4v8q:BA
    (3.1Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFBB RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 22422985 Assembly1
    rna:AA:6~2897 702,784,899,1407~1410,1418,142
    9,1442A,1475,1483~1484,1492,14
    94~1496,1517
    rna:BV:1~77 790,966,1229~1230,1338~1340,14
    00
    rna:BX:14~18 926,1400,1403,1493,1498
    3516 4v8q:BV
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    K-12
    83333    		 22422985 Assembly1
    rna:AA:6~2897 3,11~13,25~26,75~77
    rna:BA:5~1531 30~33,35,39~42
    rna:BX:14~18 35~38
    3517 4v8q:BW
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    K-12
    83333    		 22422985 Assembly1
    rna:AA:6~2897 18~21,73,77
    3518 4v8q:BY
    (3.1Å)
    		 62 GO:0006401 (P) RNA catabolic process URS000080E208 RF00023 Thermus
    thermophilus
    HB8
    300852    		 22422985 Assembly1
    rna:AA:6~2897 14,56,69
    3519 4v8t:5
    (8.1Å)
    		 3150 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02540
    RF02543    		 Saccharomyces
    cerevisiae
    S288C
    559292    		 23142985 Assembly1
    rna:7:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1203
    rna:8:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1398~139
    9,1418~1420,1441,1530,1585,161
    8,1830~1832,2386,2585,2994~299
    5
    3520 4v8t:7
    (8.1Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 23142985 Assembly1
    rna:5:3~3396 79~82,86,90,100,102~104
    3521 4v8t:8
    (8.1Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 23142985 Assembly1
    rna:5:3~3396 1~13,15~22,24~33,35~37,40,53~5
    4,104,109~110,113~115,126,129,
    136~152,154~157
    3522 4v8u:AA
    (3.7Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23527033 Assembly1
    rna:AV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:AW:1~76 694,1383
    rna:AX:11~22 530,693,926,1400,1492~1493,149
    8,1503,1505~1506
    rna:BA:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1475,1483~1484
    ,1493~1496,1517
    3523 4v8u:AV
    (3.7Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Thermus
    thermophilus
    HB8
    300852    		 23527033 Assembly1
    rna:AA:5~1531 30~31,34,40~41
    rna:AX:11~22 34~37
    rna:BA:6~2897 12,24~25,74~76
    3524 4v8u:AW
    (3.7Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    HB8
    300852    		 23527033 Assembly1
    rna:AA:5~1531 34,38
    rna:AX:11~22 35~36
    rna:BA:6~2897 19,76
    3525 4v8u:AX
    (3.7Å)
    		 12 N/A URS000080E01B N/A Thermus
    thermophilus
    HB8
    300852    		 23527033 Assembly1
    rna:AA:5~1531 11,13~16,18~21
    rna:AV:1~76 16~18
    rna:AW:1~76 13~14
    3526 4v8u:BA
    (3.7Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E0F3 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 23527033 Assembly1
    rna:AA:5~1531 1689,1703~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1949,1959~1961,
    2863~2864
    rna:AV:1~76 1907~1909,1922~1923,2251~2253,
    2450~2451,2585,2602
    rna:AW:1~76 1851,2169,2394,2421~2422,2432
    rna:BB:1~119 861~863,915,917~919
    3527 4v8u:BB
    (3.7Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 23527033 Assembly1
    rna:BA:6~2897 78~81,97~98,100~101
    3528 4v8u:CA
    (3.7Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23527033 Assembly2
    rna:CV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:CW:1~76 693~694,1383
    rna:CX:11~22 530,693,926,1400,1492~1493,149
    8,1503,1506
    rna:DA:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1474~1475,1483
    ~1484,1494~1496,1517
    3529 4v8u:CV
    (3.7Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Thermus
    thermophilus
    HB8
    300852    		 23527033 Assembly2
    rna:CA:5~1531 30~31,34,38,40~41
    rna:CX:11~22 34~37
    rna:DA:6~2897 12~13,24~25,74~76
    3530 4v8u:CW
    (3.7Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    HB8
    300852    		 23527033 Assembly2
    rna:CA:5~1531 34,37~38
    rna:CX:11~22 35~36
    rna:DA:6~2897 17A,19~20,71,76
    3531 4v8u:CX
    (3.7Å)
    		 12 N/A URS000080E01B N/A Thermus
    thermophilus
    HB8
    300852    		 23527033 Assembly2
    rna:CA:5~1531 11,13~21
    rna:CV:1~76 16~18
    rna:CW:1~76 13~14
    3532 4v8u:DA
    (3.7Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E0F3 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 23527033 Assembly2
    rna:CA:5~1531 1689,1701,1703~1704,1832,1836~
    1837,1846,1848,1895,1912~1913,
    1915~1916,1919~1920,1947~1948,
    1959~1961,2863~2864
    rna:CV:1~76 1907~1909,1922~1924,2251~2253,
    2450~2451,2585,2602
    rna:CW:1~76 1851,2112,2169,2180,2394~2395,
    2421~2422,2432
    rna:DB:1~119 861~863,915,917~919
    3533 4v8u:DB
    (3.7Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 23527033 Assembly2
    rna:DA:6~2897 78~81,97~98,100~101
    3534 4v8x:AA
    (3.35Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E260 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23945936 Assembly1
    rna:AV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:AW:1~76 693~694
    rna:AX:13~23 926,1400,1402~1403,1493,1498,1
    505
    rna:BA:6~2897 702,783~784,899,1407~1409,1418
    ,1429~1430,1442A,1473~1475,148
    3~1484,1491,1494~1495,1517
    3535 4v8x:AV
    (3.35Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    HB8
    300852    		 23945936 Assembly1
    rna:AA:5~1531 30~32,34,38~41
    rna:AX:13~23 35~37
    rna:BA:6~2897 11~13,24~25,74~76
    3536 4v8x:AW
    (3.35Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    HB8
    300852    		 23945936 Assembly1
    rna:AA:5~1531 37~38
    rna:BA:6~2897 72,76
    3537 4v8x:AX
    (3.35Å)
    		 11 N/A URS000080DD8D N/A synthetic
    construct
    32630    		 23945936 Assembly1
    rna:AA:5~1531 14~18,20,23
    rna:AV:1~76 16~18
    3538 4v8x:BA
    (3.35Å)
    		 2848 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E03F RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 23945936 Assembly1
    rna:AA:5~1531 1700~1704,1832,1836~1837,1846,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1948,1959~1961,2864
    rna:AV:1~76 1907~1909,1922~1924,2064,2251~
    2253,2450~2451,2602
    rna:AW:1~76 1851~1852,2394~2395,2421~2422
    rna:BB:1~119 861~864,916~919
    3539 4v8x:BB
    (3.35Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE2B RF00001 Thermus
    thermophilus
    HB8
    300852    		 23945936 Assembly1
    rna:BA:6~2897 78~81,97~98,100~101
    3540 4v8x:CA
    (3.35Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E260 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23945936 Assembly2
    rna:CV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:CW:1~76 693~694
    rna:CX:13~22 926,1400~1401,1403,1493,1498,1
    505~1506
    rna:DA:6~2897 702,783~784,899,1407~1409,1418
    ,1429~1430,1442A,1474~1475,148
    3~1484,1491,1494~1496,1517
    3541 4v8x:CV
    (3.35Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    HB8
    300852    		 23945936 Assembly2
    rna:CA:5~1531 30~32,34,38,40~41
    rna:CX:13~22 34~37
    rna:DA:6~2897 11~13,24~25,74~76
    3542 4v8x:CW
    (3.35Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    HB8
    300852    		 23945936 Assembly2
    rna:CA:5~1531 37~38
    rna:DA:6~2897 17A,19,56,72,76
    3543 4v8x:CX
    (3.35Å)
    		 10 N/A URS000080E197 N/A Escherichia
    coli
    562    		 23945936 Assembly2
    rna:CA:5~1531 14~20
    rna:CV:1~76 16~18
    3544 4v8x:DA
    (3.35Å)
    		 2848 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E03F RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 23945936 Assembly2
    rna:CA:5~1531 1700~1701,1703~1704,1832,1836~
    1837,1846,1848,1912~1913,1915~
    1916,1919~1920,1947~1948,1959~
    1961,2864
    rna:CV:1~76 1907~1909,1922~1924,2251~2253,
    2255,2450~2451,2601~2602
    rna:CW:1~76 1851~1852,2112,2169,2180~2181,
    2394~2395,2421~2422
    rna:DB:1~119 861~864,917~919
    3545 4v8x:DB
    (3.35Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE2B RF00001 Thermus
    thermophilus
    HB8
    300852    		 23945936 Assembly2
    rna:DA:6~2897 78~81,97~98,100~101
    3546 4v8y:B2
    (4.3Å)
    		 1781 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE56 RF01960
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 24200810
    101

    441

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:B5:3~3396 629,913,971,994~995,1002,1004,
    1643~1646,1655~1657,1667,1746~
    1748,1756~1759,1780~1781
    rna:CW:1~76 1191~1192,1462
    3547 4v8y:B5
    (4.3Å)
    		 3147 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02540
    RF02543    		 Saccharomyces
    cerevisiae
    4932    		 24200810
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:B2:1~1798 846,1935~1936,2125~2126,2195~2
    196,2206~2207,2254~2260,2262~2
    265,2290~2292,2301~2304
    rna:B7:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1203
    rna:B8:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1398~139
    9,1418~1420,1441,1530,1585,161
    8,1830~1832,2386,2585,2994~299
    5
    rna:CN:2122~2208 2442~2444
    rna:CW:1~76 2211,2764~2766,2792~2793,2802
    3548 4v8y:B7
    (4.3Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 24200810 Assembly1
    rna:B5:3~3396 79~82,86,90,100,102~104
    3549 4v8y:B8
    (4.3Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 24200810
    441    		 Assembly1
    rna:B5:3~3396 1~13,15~22,24~33,35~37,40,53~5
    4,104,109~110,113~115,126,129,
    136~152,154~157
    3550 4v8y:CN
    (4.3Å)
    		 87 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DF88 RF02541 Saccharomyces
    cerevisiae
    4932    		 24200810 Assembly1
    rna:B5:3~3396 2122~2124,2207~2208
    rna:CW:1~76 2133~2134,2190~2191
    3551 4v8y:CW
    (4.3Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Saccharomyces
    cerevisiae
    4932    		 24200810 Assembly1
    rna:B2:1~1798 30,34~35,41
    rna:B5:3~3396 71,75~76
    rna:CN:2122~2208 19,56~57
    3552 4v8z:B2
    (6.6Å)
    		 1781 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE56 RF01960
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 24200810
    101

    441

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:B5:3~3396 629,913,971,994~995,1002,1004,
    1643~1646,1655~1657,1667,1746~
    1748,1756~1759,1780~1781
    rna:CW:1~76 1178~1179,1190~1191,1274,1427~
    1428,1637
    rna:CX:1~3 1637~1640,1761
    3553 4v8z:B5
    (6.6Å)
    		 3147 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02540
    RF02543    		 Saccharomyces
    cerevisiae
    4932    		 24200810
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:B2:1~1798 846,1935~1936,2125~2126,2195~2
    196,2206~2207,2254~2260,2262~2
    265,2290~2292,2301~2304
    rna:B7:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1203
    rna:B8:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1398~139
    9,1418~1420,1441,1530,1585,161
    8,1830~1832,2386,2585,2994~299
    5
    rna:CW:1~76 2614~2616,2621~2625,2627
    3554 4v8z:B7
    (6.6Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 24200810 Assembly1
    rna:B5:3~3396 79~82,86,90,100,102~104
    3555 4v8z:B8
    (6.6Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 24200810
    441    		 Assembly1
    rna:B5:3~3396 1~13,15~22,24~33,35~37,40,53~5
    4,104,109~110,113~115,126,129,
    136~152,154~157
    3556 4v8z:CW
    (6.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E129 RF00005 Saccharomyces
    cerevisiae
    4932    		 24200810 Assembly1
    rna:B2:1~1798 29~35,43
    rna:B5:3~3396 74~76
    rna:CX:1~3 34,37
    3557 4v90:AA
    (2.95Å)
    		 1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00006D750F RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23912278 Assembly1
    rna:AV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:AX:11~19 693,788,926,1401~1402,1498,150
    5~1506
    rna:BA:6~2897 702,1407~1409,1418,1429,1474~1
    475,1483~1484,1491~1492,1494~1
    496,1517
    3558 4v90:AV
    (2.95Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DEEA RF00005 Thermus
    thermophilus
    HB8
    300852    		 23912278 Assembly1
    rna:AA:5~1534 29~32,34,38~41
    rna:AX:11~19 34~37
    rna:BA:6~2897 3~4,19,70~71,76
    3559 4v90:BA
    (2.95Å)
    		 2901 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E31E RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 23912278 Assembly1
    rna:AA:5~1534 1689,1701,1703~1704,1846,1912~
    1913,1915~1916,1919~1920,1947~
    1948,1959~1961
    rna:AV:1~76 1850~1852,1891~1893,2169,2394~
    2395,2421~2422,2432
    rna:BB:1~119 861~864,917~919,958
    3560 4v90:BB
    (2.95Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 23912278 Assembly1
    rna:BA:6~2897 78~81,90~91,97~98,100~101
    3561 4v91:1
    (3.7Å)
    		 3203 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DF9A RF02540
    RF02543    		 Kluyveromyces
    lactis
    28985    		 24792965 Assembly1
    rna:3:1~121 996~998,1052~1056,1171,1197,12
    03
    rna:4:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1398~139
    9,1419,1530,1585,1618,1830~183
    2,2386,2585,2994~2995
    3562 4v91:3
    (3.7Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Kluyveromyces
    lactis
    28985    		 24792965 Assembly1
    rna:1:3~3396 79~82,86,90,100,102~103
    3563 4v91:4
    (3.7Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Kluyveromyces
    lactis
    28985    		 24792965 Assembly1
    rna:1:3~3396 1~22,24~33,35~37,40~41,53,104,
    106,109~110,113~115,126,129,13
    6~157
    3564 4v92:A2
    (3.7Å)
    		 1764 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DD84 RF01960
    RF01959
    RF00177    		 Kluyveromyces
    lactis
    28985    		 24792965 Assembly1
    rna:AZ:6025~6222 1274,1427,1755~1756
    3565 4v92:AZ
    (3.7Å)
    		 190 GO:0043022 (F) ribosome binding URS000080DD48 RF00458 Cricket
    paralysis
    virus
    12136    		 24792965 Assembly1
    rna:A2:1~1798 6187,6189~6190,6214~6217
    3566 4v95:AA
    (3.2Å)
    		 1466 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 22422986 Assembly1
    rna:AV:1~76 790,966,1229,1338~1340,1400
    rna:AX:1~6 693,926,1400~1401,1403,1498,15
    05~1506
    rna:BA:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1473~1475,1483
    ~1484,1492~1496,1517
    3567 4v95:AV
    (3.2Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    HB8
    300852    		 22422986 Assembly1
    rna:AA:4~1532 29~32,34,38,40~41
    rna:AX:1~6 34~37
    rna:BA:6~2897 2~3,11~13,24~25,74~76
    3568 4v95:BA
    (3.2Å)
    		 2752 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 22422986 Assembly1
    rna:AA:4~1532 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1948,1959~1961,
    2863~2864
    rna:AV:1~76 1908~1909,1922~1924,2064,2251~
    2253,2255~2256,2450~2451,2602
    rna:BB:1~120 861~864,917~919,958
    3569 4v95:BB
    (3.2Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 22422986 Assembly1
    rna:BA:6~2897 78~81,90,97~98,100~101
    3570 4v95:CA
    (3.2Å)
    		 1461 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 22422986 Assembly2
    rna:CV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:CX:1~6 693,926,1400~1402,1498,1505~15
    06
    rna:DA:6~2897 702,784,899~900,1407~1409,1418
    ,1429,1442A,1473~1475,1483~148
    4,1492,1494~1496,1517
    3571 4v95:CV
    (3.2Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    HB8
    300852    		 22422986 Assembly2
    rna:CA:4~1531 29~32,34,38~41
    rna:CX:1~6 34~37
    rna:DA:6~2897 2~3,11~13,24~25,74~76
    3572 4v95:DA
    (3.2Å)
    		 2722 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 22422986 Assembly2
    rna:CA:4~1531 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1949,1959~1961,
    2864
    rna:CV:1~76 1907~1909,1922~1924,2064,2251~
    2253,2255,2450~2451,2585,2602
    rna:DB:1~120 861~864,917~919,958
    3573 4v95:DB
    (3.2Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 22422986 Assembly2
    rna:DA:6~2897 78~81,90,97~98,100~101
    3574 4v97:AA
    (3.516Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E306 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23630274 Assembly1
    rna:AV:1~77 790,966,1229~1230,1338~1340
    rna:AX:11~22 530,693,926,1397,1400~1401,149
    2~1493,1498,1503
    rna:AY:27~43 530,1054,1493
    rna:BA:6~2897 702,784,899,1407~1409,1418,142
    9,1442A,1473~1475,1483~1484,14
    94~1496,1517
    3575 4v97:AV
    (3.516Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    K-12
    83333    		 23630274 Assembly1
    rna:AA:5~1531 31~32,35,39~42
    rna:AW:1~76 40~41
    rna:AX:11~22 35~38
    rna:BA:6~2897 11~13,25~26,75~77
    3576 4v97:AW
    (3.516Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 23630274 Assembly1
    rna:AV:1~77 35~36
    rna:BA:6~2897 17,19,56,71~72,76
    3577 4v97:AX
    (3.516Å)
    		 12 N/A N/A N/A N/A 23630274 Assembly1
    rna:AA:5~1531 12,14,16~22
    rna:AV:1~77 16~18
    rna:AY:27~43 19~21
    3578 4v97:AY
    (3.516Å)
    		 17 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 23630274 Assembly1
    rna:AA:5~1531 34~37
    rna:AX:11~22 35~37
    3579 4v97:BA
    (3.516Å)
    		 2810 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 23630274 Assembly1
    rna:AA:5~1531 1700~1704,1832,1837,1846,1848,
    1895,1912~1913,1915~1916,1919~
    1920,1947~1948,1959~1960,2864
    rna:AV:1~77 1907~1909,1922~1924,2063,2251~
    2253,2450~2451,2585,2601~2602
    rna:AW:1~76 1851,2112,2169,2180~2181,2394~
    2395,2421~2422
    rna:BB:1~119 861~864,917~919,958
    3580 4v97:BB
    (3.516Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 23630274 Assembly1
    rna:BA:6~2897 78~81,90,98,100~101
    3581 4v97:CA
    (3.516Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E306 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23630274 Assembly2
    rna:CV:1~77 790,966,1229,1338~1340,1400
    rna:CX:13~22 530,926,1397,1400~1401,1403,14
    92~1493,1498,1505
    rna:CY:27~43 530~531,1054,1493
    rna:DA:6~2897 702,784,899,1407~1409,1418,142
    9,1442A,1473~1475,1483~1484,14
    93~1496,1517
    3582 4v97:CV
    (3.516Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    K-12
    83333    		 23630274 Assembly2
    rna:CA:5~1531 30~33,35,39,41~42
    rna:CW:1~76 40~41
    rna:CX:13~22 35~38
    rna:DA:6~2897 11~13,25~26,75~77
    3583 4v97:CW
    (3.516Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 23630274 Assembly2
    rna:CV:1~77 35~36
    rna:CX:13~22 34~35
    rna:DA:6~2897 17,19,56,71~72,76
    3584 4v97:CX
    (3.516Å)
    		 10 N/A N/A N/A N/A 23630274 Assembly2
    rna:CA:5~1531 15~22
    rna:CV:1~77 16,18
    rna:CW:1~76 13~14
    rna:CY:27~43 19~22
    3585 4v97:CY
    (3.516Å)
    		 17 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    K-12
    83333    		 23630274 Assembly2
    rna:CA:5~1531 34~37
    rna:CX:13~22 34~37
    3586 4v97:DA
    (3.516Å)
    		 2824 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 23630274 Assembly2
    rna:CA:5~1531 1700~1704,1832,1836~1837,1846,
    1848,1895,1912~1913,1915~1916,
    1919~1920,1947~1948,1959~1960,
    2864
    rna:CV:1~77 1907~1909,1922~1924,2251~2253,
    2255,2450~2451,2601~2602
    rna:CW:1~76 1851,2112,2169,2180~2181,2394~
    2395,2421~2422
    rna:DB:1~119 861~864,915,917~919,958
    3587 4v97:DB
    (3.516Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 23630274 Assembly2
    rna:DA:6~2897 78~81,90,98,100~101
    3588 4v9a:AA
    (3.2999Å)
    		 1506 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEDF RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23431179 Assembly1
    rna:AC:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:A1:16~19 926,1400~1401,1403,1493,1498
    rna:BA:1~2902 702,783~784,899,1407~1409,1418
    ,1429,1443,1473~1475,1483~1485
    ,1492~1496,1517
    3589 4v9a:AC
    (3.2999Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Thermus
    thermophilus
    HB8
    300852    		 23431179 Assembly1
    rna:AA:5~1533 29~32,34,38~41
    rna:A1:16~19 34~37
    rna:BA:1~2902 2~3,11~13,24~25,74~76
    3590 4v9a:BA
    (3.2999Å)
    		 2912 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E23D RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 23431179 Assembly1
    rna:AA:5~1533 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1948,1959~1961,
    2863~2864
    rna:AC:1~76 1907~1909,1922~1924,2064,2251~
    2253,2255,2450~2451,2602
    rna:BB:1M~119 861~864,915,917~919,958
    3591 4v9a:BB
    (3.2999Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 23431179 Assembly1
    rna:BA:1~2902 78~81,89A,96~97,99~101
    3592 4v9a:CA
    (3.2999Å)
    		 1506 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEDF RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23431179 Assembly2
    rna:CC:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:C1:16~19 926,1400~1403,1493,1498
    rna:DA:1~2902 702,783~784,899,1407~1409,1418
    ~1420,1429~1430,1473~1475,1483
    ~1484,1492~1496,1517
    3593 4v9a:CC
    (3.2999Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Thermus
    thermophilus
    HB8
    300852    		 23431179 Assembly2
    rna:CA:5~1533 30~32,34,38~41
    rna:C1:16~19 34~37
    rna:DA:1~2902 2~3,11~13,24~25,74~76
    3594 4v9a:DA
    (3.2999Å)
    		 2909 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E23D RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 23431179 Assembly2
    rna:CA:5~1533 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1916,1919~1920,
    1947~1950,1959~1961
    rna:CC:1~76 1907~1909,1922~1924,2064,2251~
    2253,2255,2450~2451,2601~2602
    rna:DB:1M~119 861~864,915,917~919,958
    3595 4v9a:DB
    (3.2999Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 23431179 Assembly2
    rna:DA:1~2902 78~81,89A,96~97,99~100
    3596 4v9b:AA
    (3.1Å)
    		 1506 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEDF RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 23431179 Assembly1
    rna:AC:1~76 790,1229~1230,1338~1340,1400
    rna:A1:14~19 926,1400~1401,1403,1493,1498,1
    505~1506
    rna:BA:1~2902 702,783~784,899,1407~1409,1418
    ,1429,1443,1473~1475,1483~1485
    ,1492,1494~1496,1517
    3597 4v9b:AC
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Thermus
    thermophilus
    HB8
    300852    		 23431179 Assembly1
    rna:AA:5~1533 30~32,34,38,40~41
    rna:A1:14~19 34~37
    rna:BA:1~2902 2~3,11~13,24~25,74~76
    3598 4v9b:AD
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Thermus
    thermophilus
    HB8
    300852    		 23431179 Assembly1
    rna:BA:1~2902 19,56,71~72,76
    3599 4v9b:BA
    (3.1Å)
    		 2912 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E23D RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 23431179 Assembly1
    rna:AA:5~1533 1689,1701~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1948,1959~1961,
    2863~2864
    rna:AC:1~76 1907~1909,1922~1924,2064,2251~
    2253,2255,2450~2451,2601~2602
    rna:AD:1~76 1851~1852,2112,2169,2394~2395,
    2421~2422,2432
    rna:BB:1M~119 861~864,915~919,958,1028
    3600 4v9b:BB
    (3.1Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 23431179 Assembly1
    rna:BA:1~2902 78~81,88,89A,96~97,99~101
    << < 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 > >>
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    Reference:
  • Chengxin Zhang, P. Lydia Freddolino (2023) FURNA: a database for function annotations of RNA structures, bioRxiv 2023.12.19.572314.

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