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FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    3801 4w2i:AX
    (2.7Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 25306922 Assembly1
    rna:AA:4~1531 29~32,34,38~41
    rna:AV:12~24 34~37
    rna:BA:6~2906 3,11~13,24~25,74~76
    3802 4w2i:AY
    (2.7Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 25306922 Assembly1
    rna:BA:6~2906 19,56,71~72,76
    3803 4w2i:BA
    (2.7Å)
    		 2822 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25306922 Assembly1
    rna:AA:4~1531 1736,1748~1751,1863,1867~1868,
    1877,1879,1934~1938,1941~1942,
    1969~1970,1981~1983,2873~2874
    rna:AW:1~76 928~929,942~943,1935,2495,2518
    ~2519,2565~2567,2595~2597,2614
    rna:AX:2~76 1929~1931,1944~1946,2263~2265,
    2267,2451,2463,2613~2614
    rna:AY:1~76 1882,2134,2191,2406~2407,2433~
    2434,2444
    rna:BB:1~120 908~911,961,963~965,1003
    3804 4w2i:BB
    (2.7Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 25306922 Assembly1
    rna:BA:6~2906 78~81,90,97~98,100~102
    3805 4w2i:CA
    (2.7Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25306922 Assembly2
    rna:CV:13~24 530,926,1196,1397,1400~1402,14
    92~1493,1498,1503,1505
    rna:CW:2~76 530~531,1054,1493
    rna:CX:2~76 790,966,1229~1230,1338~1340
    rna:DA:6~2897 702,783~784,899~900,1407~1409,
    1418,1429~1430,1442A,1473~1475
    ,1483~1484,1493~1496,1517
    3806 4w2i:CV
    (2.7Å)
    		 12 N/A N/A N/A synthetic
    construct
    32630    		 25306922 Assembly2
    rna:CA:4~1532 13,15~24
    rna:CW:2~76 19~21
    rna:CX:2~76 16~18
    3807 4w2i:CW
    (2.7Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 25306922 Assembly2
    rna:CA:4~1532 34~37
    rna:CV:13~24 34~37
    rna:DA:6~2897 19,37~38,56,64,74~76
    3808 4w2i:CX
    (2.7Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 25306922 Assembly2
    rna:CA:4~1532 29~32,34,38~41
    rna:CV:13~24 34~37
    rna:CY:1~76 39~40
    rna:DA:6~2897 11~13,24~25,74~76
    3809 4w2i:CY
    (2.7Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 25306922 Assembly2
    rna:DA:6~2897 19,56,71~72,76
    3810 4w2i:DA
    (2.7Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25306922 Assembly2
    rna:CA:4~1532 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1916,1919~1920,
    1947~1949,1959~1961,2863~2864
    rna:CW:2~76 881~882,896~897,1913,2482~2483
    ,2506~2507,2553~2555,2583~2585
    ,2602
    rna:CX:2~76 1907~1909,1922~1924,2251~2253,
    2439,2450~2451,2601~2602
    rna:CY:1~76 1851~1852,2112,2169,2394~2395,
    2421~2422,2432
    rna:DB:1~120 861~864,915,917~919,958
    3811 4w2i:DB
    (2.7Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 25306922 Assembly2
    rna:DA:6~2897 78~81,90,97~98,100~102
    3812 4w4g:QA
    (3.3Å)
    		 1511 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26508639 Assembly1
    rna:QV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:QX:3~20 926,1400~1401,1498,1503,1505,1
    507,1532,1534~1537,1541
    rna:RA:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1443,1473~1475,1483~
    1484,1492~1496,1517
    3813 4w4g:QV
    (3.3Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MC4100
    1403831    		 26508639 Assembly1
    rna:QA:3~1542 30~32,34,38~41
    rna:QX:3~20 34~37
    rna:RA:6~2897 11~13,24~25,74~76
    3814 4w4g:QW
    (3.3Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MC4100
    1403831    		 26508639 Assembly1
    rna:QX:3~20 34~35
    rna:RA:6~2897 4,17A,19,56,71~72,76
    3815 4w4g:QX
    (3.3Å)
    		 18 N/A N/A N/A Escherichia
    coli
    562    		 26508639 Assembly1
    rna:QA:3~1542 3,8~13,15~18
    rna:QV:1~76 16~19
    3816 4w4g:RA
    (3.3Å)
    		 2891 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFFB RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 26508639 Assembly1
    rna:QA:3~1542 1689,1700~1704,1832,1836~1837,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1948,1959~1961,2863~
    2864
    rna:QV:1~76 1907~1909,1922~1924,2064,2251~
    2253,2450~2451,2601~2602
    rna:QW:1~76 1851,2112,2169,2394~2395,2421~
    2422,2432
    rna:RB:1M~119 861~864,915,917~918,958
    3817 4w4g:RB
    (3.3Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E212 RF00001 Thermus
    thermophilus
    HB8
    300852    		 26508639 Assembly1
    rna:RA:6~2897 78~80,89A,96~97,99~100
    3818 4w4g:XA
    (3.3Å)
    		 1508 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26508639 Assembly2
    rna:XV:1~76 790,966,1229~1230,1338~1341,14
    00
    rna:XX:3~20 926,1400~1401,1498,1503,1505,1
    507,1532~1536,1539,1541
    rna:YA:6~2897 702,784,899,1407~1409,1418,142
    9,1443,1473~1475,1483~1484,149
    1,1493~1496,1517
    3819 4w4g:XV
    (3.3Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MC4100
    1403831    		 26508639 Assembly2
    rna:XA:3~1542 29~32,34,38,40~41
    rna:XX:3~20 34~37
    rna:YA:6~2897 11~13,24~25,74~76
    3820 4w4g:XW
    (3.3Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MC4100
    1403831    		 26508639 Assembly2
    rna:YA:6~2897 19,56,71~72,76
    3821 4w4g:XX
    (3.3Å)
    		 18 N/A N/A N/A Escherichia
    coli
    562    		 26508639 Assembly2
    rna:XA:3~1542 3,7~13,15~18
    rna:XV:1~76 16~19
    3822 4w4g:YA
    (3.3Å)
    		 2875 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFFB RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 26508639 Assembly2
    rna:XA:3~1542 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1948,1959~1961,
    2863~2864
    rna:XV:1~76 1907~1909,1922~1924,2064,2251~
    2253,2450~2451,2601~2602
    rna:XW:1~76 1851,2112,2169,2394~2395,2421~
    2422
    rna:YB:1M~119 861~864,915,917~919,958
    3823 4w4g:YB
    (3.3Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E212 RF00001 Thermus
    thermophilus
    HB8
    300852    		 26508639 Assembly2
    rna:YA:6~2897 78~81,89A,96~97,99~100
    3824 4w5o:B
    (1.802Å)
    		 20 N/A URS000080E33F N/A synthetic
    construct
    32630    		 25359968 Assembly1
    rna:D:1~10 2~9
    3825 4w5o:D
    (1.802Å)
    		 10 N/A URS000080E203 N/A synthetic
    construct
    32630    		 25359968 Assembly1
    rna:B:1~21 1~8
    3826 4w5q:B
    (3.101Å)
    		 18 N/A URS000080E33F N/A synthetic
    construct
    32630    		 25359968 Assembly1
    rna:D:1~10 2~9
    3827 4w5q:D
    (3.101Å)
    		 10 N/A URS000080E2A8 N/A synthetic
    construct
    32630    		 25359968 Assembly1
    rna:B:1~18 1~8
    3828 4w5r:B
    (2.5Å)
    		 11 N/A URS000080E33F N/A synthetic
    construct
    32630    		 25359968 Assembly1
    rna:D:4~12 2~9
    3829 4w5t:B
    (2.5Å)
    		 16 N/A URS000080E33F N/A synthetic
    construct
    32630    		 25359968 Assembly1
    rna:D:1~10 2~9
    3830 4w5t:D
    (2.5Å)
    		 10 N/A URS000080E1E5 N/A synthetic
    construct
    32630    		 25359968 Assembly1
    rna:B:1~21 1~8
    3831 4wce:X
    (3.526Å)
    		 2708 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001450D9 RF02540
    RF02541    		 Staphylococcus
    aureus
    subsp.
    aureus
    NCTC
    8325
    93061    		 26464510 Assembly1
    rna:Y:1~114 906~908,960,962~964,994~995,10
    02,2366
    3832 4wce:Y
    (3.526Å)
    		 114 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003DF33D RF00001 Staphylococcus
    aureus
    subsp.
    aureus
    NCTC
    8325
    93061    		 26464510 Assembly1
    rna:X:1~2920 39,76~79,85,87,94,96~97
    3833 4wf1:AA
    (3.09Å)
    		 1538 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    str.
    K-12
    substr.
    MG1655
    511145    		 25368144 Assembly1
    rna:BA:1~2903 702,783,899,1407~1408,1418,142
    0,1429,1473~1475,1483~1484,149
    2,1494~1496,1517
    3834 4wf1:BA
    (3.09Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    str.
    K-12
    substr.
    MG1655
    511145    		 25368144 Assembly1
    rna:AA:2~1539 1689,1700~1704,1832,1836,1846,
    1912~1913,1919~1920,1947~1948,
    1950,1959~1961
    rna:BB:1~119 861~864,915,917~919,958
    3835 4wf1:BB
    (3.09Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E133 RF00001 Escherichia
    coli
    str.
    K-12
    substr.
    MG1655
    511145    		 25368144 Assembly1
    rna:BA:1~2903 78~81,89,96~97,99~100
    3836 4wf1:CA
    (3.09Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    str.
    K-12
    substr.
    MG1655
    511145    		 25368144 Assembly2
    rna:DA:1~2903 702,783~784,899,1407~1409,1418
    ,1420,1428~1429,1473~1475,1483
    ~1484,1492~1495,1517
    3837 4wf1:DA
    (3.09Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    str.
    K-12
    substr.
    MG1655
    511145    		 25368144 Assembly2
    rna:CA:2~1540 1686,1689,1700~1704,1832,1836~
    1837,1848,1912~1913,1915~1916,
    1919~1920,1947~1948,1950,1959~
    1961
    rna:DB:2~119 861~864,915,917~919,958
    3838 4wf1:DB
    (3.09Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E133 RF00001 Escherichia
    coli
    str.
    K-12
    substr.
    MG1655
    511145    		 25368144 Assembly2
    rna:DA:1~2903 78~81,89,96~97,99~100
    3839 4wf9:X
    (3.427Å)
    		 2712 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001450D9 RF02540
    RF02541    		 Staphylococcus
    aureus
    subsp.
    aureus
    NCTC
    8325
    93061    		 26464510 Assembly1
    rna:Y:1~114 906~908,960,962~964,995,1002
    3840 4wf9:Y
    (3.427Å)
    		 114 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003DF33D RF00001 Staphylococcus
    aureus
    subsp.
    aureus
    NCTC
    8325
    93061    		 26464510 Assembly1
    rna:X:3~2920 39,76~79,85,87,94,96~97
    3841 4wfa:X
    (3.392Å)
    		 2711 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001450D9 RF02540
    RF02541    		 Staphylococcus
    aureus
    subsp.
    aureus
    NCTC
    8325
    93061    		 26464510 Assembly1
    rna:Y:1~114 906~908,960~964,994~995,1002
    3842 4wfa:Y
    (3.392Å)
    		 114 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003DF33D RF00001 Staphylococcus
    aureus
    subsp.
    aureus
    NCTC
    8325
    93061    		 26464510 Assembly1
    rna:X:1~2920 76~79,85,87,94,96~97
    3843 4wfb:X
    (3.43Å)
    		 2707 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001450D9 RF02540
    RF02541    		 Staphylococcus
    aureus
    subsp.
    aureus
    NCTC
    8325
    93061    		 26464510 Assembly1
    rna:Y:1~114 906~908,960,962~964,994~995,10
    02
    3844 4wfb:Y
    (3.43Å)
    		 114 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003DF33D RF00001 Staphylococcus
    aureus
    subsp.
    aureus
    NCTC
    8325
    93061    		 26464510 Assembly1
    rna:X:1~2920 76~79,85,87,94,96~97
    3845 4wfn:X
    (3.54Å)
    		 2680 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02540
    RF02541    		 Deinococcus
    radiodurans
    R1
    =
    ATCC
    13939
    =
    DSM
    20539
    243230    		 28689968 Assembly1
    rna:Y:2~123 874~876,927~931,969
    3846 4wfn:Y
    (3.54Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000420396 RF00001 Deinococcus
    radiodurans
    R1
    =
    ATCC
    13939
    =
    DSM
    20539
    243230    		 28689968 Assembly1
    rna:X:1~2877 80~83,92,100~103
    3847 4woi:AA
    (3.0Å)
    		 1538 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 26224058 Assembly1
    rna:AW:2~16 693,926,1400~1401,1498,1505~15
    06,1534~1539
    rna:AX:1~76 790,966,1229,1338~1341,1400
    rna:BA:1~2903 702,783~784,1407~1409,1418,142
    0,1428~1429,1474~1475,1483~148
    4,1494~1496,1517
    3848 4woi:AW
    (3.0Å)
    		 15 N/A N/A N/A Enterobacteria
    phage
    L1
    268588    		 26224058 Assembly1
    rna:AA:2~1539 2~8,10~15
    rna:AX:1~76 13~15
    3849 4woi:AX
    (3.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 26224058 Assembly1
    rna:AA:2~1539 29~32,34,38,40~41
    rna:AW:2~16 34~37
    rna:BA:1~2903 1,75~76
    3850 4woi:BA
    (3.0Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 26224058 Assembly1
    rna:AA:2~1539 1689,1700~1701,1703~1704,1836~
    1837,1847,1912~1913,1915~1916,
    1919~1920,1947~1948,1950,1959~
    1961
    rna:AX:1~76 2394~2395,2421~2423,2432
    rna:BB:3001~3119 861~864,915~919,958,2339~2340
    3851 4woi:BB
    (3.0Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 26224058 Assembly1
    rna:BA:1~2903 3041,3078~3081,3089~3090,3096~
    3097,3099~3101
    3852 4woi:CA
    (3.0Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 26224058 Assembly2
    rna:CB:3002~3119 861~864,915,917~919,958,2339
    rna:DA:2~1540 1689,1701~1704,1832,1837,1846,
    1848,1895,1912~1913,1915~1916,
    1919~1920,1947~1948,1959~1960
    rna:DW:1~76 1907~1909,1922~1924,2251~2253,
    2255,2450~2451,2602
    3853 4woi:CB
    (3.0Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 26224058 Assembly2
    rna:CA:1~2903 3041,3078~3081,3089,3096~3097,
    3099~3100
    3854 4woi:DA
    (3.0Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 26224058 Assembly2
    rna:CA:1~2903 702,784,899,1407~1409,1418,142
    9,1473~1475,1483~1484,1493~149
    6,1517
    rna:DV:1~16 693,926,1400~1401,1498,1505~15
    06,1534~1540
    rna:DW:1~76 790,966,1229~1230,1338~1341,14
    00
    3855 4woi:DV
    (3.0Å)
    		 16 N/A N/A N/A Enterobacteria
    phage
    L1
    268588    		 26224058 Assembly2
    rna:DA:2~1540 2~7,10~15
    rna:DW:1~76 13~15
    3856 4woi:DW
    (3.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 26224058 Assembly2
    rna:CA:1~2903 2~3,11~13,24~25,74~76
    rna:DA:2~1540 29~32,34,38~41
    rna:DV:1~16 34~37
    3857 4wpo:AA
    (2.8Å)
    		 2872 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25594181 Assembly1
    rna:AB:1~120 908~911,961,963~965,1003
    rna:BA:4~1531 1747~1751,1863,1867~1868,1877,
    1879,1934~1938,1941~1942,1969~
    1971,1981~1983,2873~2874
    rna:BW:1~76 928~929,942~943,1935,2463~2464
    ,2494~2495,2518~2519,2565~2567
    ,2595~2597,2614
    rna:BX:2~76 1929~1931,1944~1946,2083,2263~
    2265,2462~2463,2597,2614
    rna:BY:1~76 1882,2134,2191,2406~2407,2433~
    2434
    3858 4wpo:AB
    (2.8Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 25594181 Assembly1
    rna:AA:6~2906 78~81,90,97~98,100~101
    3859 4wpo:BA
    (2.8Å)
    		 1497 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25594181 Assembly1
    rna:AA:6~2906 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1473~1475,1483
    ~1484,1493~1496,1517
    rna:BV:12~24 530,926,1196,1397,1400~1401,14
    92~1493,1498,1503,1505,1507
    rna:BW:1~76 530~531,1054,1493
    rna:BX:2~76 790,966,1229,1338~1340,1400
    3860 4wpo:BV
    (2.8Å)
    		 13 N/A N/A N/A synthetic
    construct
    32630    		 25594181 Assembly1
    rna:BA:4~1531 12~13,15~24
    rna:BW:1~76 19~21
    rna:BX:2~76 16~18
    3861 4wpo:BW
    (2.8Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MC4100
    1403831    		 25594181 Assembly1
    rna:AA:6~2906 19,37~38,55~56,64,74~76
    rna:BA:4~1531 34~37
    rna:BV:12~24 34~37
    3862 4wpo:BX
    (2.8Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MC4100
    1403831    		 25594181 Assembly1
    rna:AA:6~2906 11~13,24~25,74~76
    rna:BA:4~1531 30~32,34,38,40~41
    rna:BV:12~24 34~37
    3863 4wpo:BY
    (2.8Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MC4100
    1403831    		 25594181 Assembly1
    rna:AA:6~2906 19,56,71~72,76
    3864 4wpo:CA
    (2.8Å)
    		 2868 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25594181 Assembly2
    rna:CB:1~120 861~864,915,917~919,958
    rna:DA:4~1532 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1916,1919~1920,
    1947~1948,1959~1961,2863~2864
    rna:DW:2~76 881~882,896~898,1913,2451~2452
    ,2482~2483,2506~2507,2553~2555
    ,2583~2585,2602
    rna:DX:2~76 1907~1909,1922~1924,2061,2063,
    2251~2253,2450~2451,2585,2602
    rna:DY:1~76 1851,2112,2169,2394~2395,2421~
    2422
    3865 4wpo:CB
    (2.8Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 25594181 Assembly2
    rna:CA:6~2897 78~81,90,97~98,100~101
    3866 4wpo:DA
    (2.8Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25594181 Assembly2
    rna:CA:6~2897 702,783~784,899,1407~1409,1418
    ,1429~1430,1442A,1473~1475,148
    3~1484,1493~1496,1517
    rna:DV:13~24 530,693,926,1196,1397,1400~140
    1,1492~1493,1498,1503,1505
    rna:DW:2~76 530,1054,1493
    rna:DX:2~76 790,966,1229~1230,1338~1340,14
    00
    3867 4wpo:DV
    (2.8Å)
    		 12 N/A N/A N/A synthetic
    construct
    32630    		 25594181 Assembly2
    rna:DA:4~1532 13~24
    rna:DW:2~76 19~21
    rna:DX:2~76 16~18
    3868 4wpo:DW
    (2.8Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MC4100
    1403831    		 25594181 Assembly2
    rna:CA:6~2897 19,37~38,55~56,64,74~76
    rna:DA:4~1532 34~36
    rna:DV:13~24 34~37
    3869 4wpo:DX
    (2.8Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MC4100
    1403831    		 25594181 Assembly2
    rna:CA:6~2897 11~13,24~25,74~76
    rna:DA:4~1532 30~32,34,38,40~41
    rna:DV:13~24 34~37
    3870 4wpo:DY
    (2.8Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MC4100
    1403831    		 25594181 Assembly2
    rna:CA:6~2897 19,56,71~72,76
    3871 4wq1:13
    (3.1Å)
    		 1498 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26037619 Assembly1
    rna:1K:1~85 530~531,1054,1493
    rna:2K:1~77 790,966,1229,1338~1340,1400
    rna:4K:12~26 926,1196,1397,1400~1401,1492~1
    493,1498,1503,1505,1507
    rna:1H:1~2902 702,783~784,899~900,1407~1409,
    1418,1429,1443,1473~1475,1483~
    1484,1494~1496,1517
    3872 4wq1:14
    (3.1Å)
    		 2907 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E23D RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 26037619 Assembly2
    rna:1G:4~1531 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1949,1959~1961,
    2863~2864
    rna:1L:1~85 897,1913,1943,2482,2506~2507,2
    553,2555,2583~2585,2602
    rna:2L:1~77 1907~1909,1922~1924,2251~2253,
    2255,2450~2451,2601~2602
    rna:3L:1~85 1851,2112,2169,2394~2395,2421~
    2422,2432
    rna:1J:1M~119 861~864,915~919,958
    3873 4wq1:16
    (3.1Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 26037619 Assembly1
    rna:1H:1~2902 78~81,89A,96~97,99~100
    3874 4wq1:1G
    (3.1Å)
    		 1498 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000868551 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26037619 Assembly2
    rna:1L:1~85 530~531,1054,1493
    rna:2L:1~77 790,966,1229~1230,1338~1340,14
    00
    rna:3L:1~85 693~694
    rna:4L:10~25 926,1196,1397,1400~1402,1492~1
    493,1498,1503,1505
    rna:14:1~2902 702,784,899~900,1407~1409,1418
    ,1429,1443,1473~1475,1483~1484
    ,1493~1496,1517
    3875 4wq1:1H
    (3.1Å)
    		 2912 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E23D RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 26037619 Assembly1
    rna:13:4~1531 1689,1701~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1949,1959~1961,
    2863~2864
    rna:1K:1~85 881~883,897,1913,2482,2506~250
    7,2553~2555,2583~2585
    rna:2K:1~77 1907~1909,1922~1924,2251~2253,
    2255,2450~2451,2601~2602
    rna:3K:1~85 1851~1852,2112,2169,2394~2395,
    2421~2422,2432
    rna:16:1M~119 861~863,915,917~919,958
    3876 4wq1:1J
    (3.1Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 26037619 Assembly2
    rna:14:1~2902 78~81,89A,96~97,99~100
    3877 4wq1:1K
    (3.1Å)
    		 85 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002D9DE2 RF00005 Escherichia
    coli
    K-12
    83333    		 26037619 Assembly1
    rna:13:4~1531 35~38
    rna:4K:12~26 35~38
    rna:1H:1~2902 18~19,38~39,65,72,83~85
    3878 4wq1:1L
    (3.1Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002D9DE2 RF00005 Escherichia
    coli
    K-12
    83333    		 26037619 Assembly2
    rna:1G:4~1531 35~38
    rna:4L:10~25 35~38
    rna:14:1~2902 18,38~39,72,82~85
    3879 4wq1:2K
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Escherichia
    coli
    K-12
    83333    		 26037619 Assembly1
    rna:13:4~1531 30~33,35,39,41~42
    rna:3K:1~85 40~41
    rna:4K:12~26 35~38
    rna:1H:1~2902 2,11~13,25~26,75~77
    3880 4wq1:2L
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000057545F RF00005 Escherichia
    coli
    K-12
    83333    		 26037619 Assembly2
    rna:1G:4~1531 31~33,35,39~42
    rna:3L:1~85 40~41
    rna:4L:10~25 35~38
    rna:14:1~2902 2~3,11~13,25~26,75~77
    3881 4wq1:3K
    (3.1Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002D9DE2 RF00005 Escherichia
    coli
    K-12
    83333    		 26037619 Assembly1
    rna:1H:1~2902 18,65,80~81,85
    3882 4wq1:3L
    (3.1Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002D9DE2 RF00005 Escherichia
    coli
    K-12
    83333    		 26037619 Assembly2
    rna:2L:1~77 36~37
    rna:14:1~2902 18,65,80~81,85
    3883 4wq1:4K
    (3.1Å)
    		 15 N/A N/A N/A Thermus
    thermophilus
    HB8
    300852    		 26037619 Assembly1
    rna:13:4~1531 12~13,15~18,20,22~23
    rna:1K:1~85 19~22
    rna:2K:1~77 16~18
    3884 4wq1:4L
    (3.1Å)
    		 16 N/A N/A N/A Thermus
    thermophilus
    HB8
    300852    		 26037619 Assembly2
    rna:1G:4~1531 13,15~18,20,22~23
    rna:1L:1~85 19~21
    rna:2L:1~77 16~18
    3885 4wqf:AA
    (2.8Å)
    		 2852 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25594181 Assembly1
    rna:AB:1~120 908~911,961~965,1003
    rna:BA:4~1531 1736,1747~1748,1750~1751,1863,
    1867~1868,1877,1879,1934~1938,
    1941~1942,1969~1970,1981~1983,
    2873~2874
    rna:BW:1~76 1929~1931,1944~1946,2263~2265,
    2267,2462~2463,2614
    rna:BY:1~76 2134,2191,2406~2407,2433~2434
    3886 4wqf:AB
    (2.8Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 25594181 Assembly1
    rna:AA:6~2906 78~81,90,97~98,100~101
    3887 4wqf:BA
    (2.8Å)
    		 1495 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25594181 Assembly1
    rna:AA:6~2906 702,783~784,899,1407~1409,1418
    ,1429,1442A,1474~1475,1483~148
    4,1494~1496,1517
    rna:BV:12~18 926,1401,1498,1503,1505,1507,1
    531
    rna:BW:1~76 790,966,1229,1338~1340,1400
    3888 4wqf:BW
    (2.8Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MC4100
    1403831    		 25594181 Assembly1
    rna:AA:6~2906 2~3,11~13,24~25,74~76
    rna:BA:4~1531 29~32,34,38,40~41
    rna:BV:12~18 35~37
    3889 4wqf:BY
    (2.8Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MC4100
    1403831    		 25594181 Assembly1
    rna:AA:6~2906 19,56,76
    3890 4wqf:CA
    (2.8Å)
    		 2848 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25594181 Assembly2
    rna:CB:1~120 861~864,915,917~919,958
    rna:DA:4~1532 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1916,1919~1920,
    1947~1948,1959~1961,2863~2864
    rna:DW:1~76 1907~1909,1922~1924,2064,2251~
    2253,2255,2450~2451,2602
    rna:DY:1~76 2112,2169,2394,2422,2432
    3891 4wqf:CB
    (2.8Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 25594181 Assembly2
    rna:CA:6~2897 78~81,90,97~98,100~102
    3892 4wqf:DA
    (2.8Å)
    		 1501 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25594181 Assembly2
    rna:CA:6~2897 702,784,899,1407~1409,1418,142
    9,1442A,1473~1475,1483~1484,14
    94~1496,1517
    rna:DV:13~18 693,926,1400~1401,1403,1498
    rna:DW:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:DY:1~76 1339~1340
    3893 4wqf:DW
    (2.8Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MC4100
    1403831    		 25594181 Assembly2
    rna:CA:6~2897 2,11~13,24~25,74~76
    rna:DA:4~1532 29~32,34,38~39,41
    rna:DV:13~18 35~37
    rna:DY:1~76 39~41
    3894 4wqf:DY
    (2.8Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MC4100
    1403831    		 25594181 Assembly2
    rna:CA:6~2897 19,56,76
    rna:DW:1~76 35~36
    3895 4wqr:13
    (3.15Å)
    		 1498 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26037619 Assembly1
    rna:1K:1~76 530~531,1054,1493
    rna:2K:1~77 790,1229~1230,1338~1340,1400
    rna:4K:13~26 530,926,1196,1397,1400~1401,14
    92~1493,1498,1503,1505,1507
    rna:1H:1~2902 702,783~784,899,1407~1409,1418
    ,1429,1443,1473~1475,1483~1484
    ,1494~1496,1517
    3896 4wqr:14
    (3.15Å)
    		 2909 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000868533 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 26037619 Assembly2
    rna:1G:4~1530 1689,1700~1704,1832,1837,1846,
    1848,1912~1916,1919~1920,1947~
    1949,1959~1961,2863~2864
    rna:1L:1~76 882,896~897,1913,1915~1916,194
    2,2482,2507,2553~2555,2583~258
    4,2602
    rna:2L:1~77 1907~1909,1922~1924,2064,2251~
    2253,2255,2450~2451,2601~2602
    rna:3L:1~76 1851,2111~2112,2169,2394~2395,
    2421~2422
    rna:1J:1M~119 861~864,915~919,958,1026
    3897 4wqr:16
    (3.15Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 26037619 Assembly1
    rna:1H:1~2902 78~81,89A,96~97,99~100
    3898 4wqr:1G
    (3.15Å)
    		 1497 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26037619 Assembly2
    rna:1L:1~76 530,1054,1493
    rna:2L:1~77 790,966,1229~1230,1338~1340,14
    00
    rna:3L:1~76 1340,1382
    rna:4L:13~18 926,1400~1402,1498,1503,1505,1
    507
    rna:14:1~2902 702,784,899~900,1407~1409,1418
    ,1429,1443,1473~1475,1483~1484
    ,1493~1496,1517
    3899 4wqr:1H
    (3.15Å)
    		 2912 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000868533 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 26037619 Assembly1
    rna:13:4~1531 1689,1701~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1948,1959~1961,
    2863~2864
    rna:1K:1~76 881~883,896~897,1913,2483,2506
    ~2507,2553,2555,2583~2585,2602
    rna:2K:1~77 1907~1909,1922~1924,2064,2251~
    2253,2255,2450~2451,2602
    rna:3K:1~76 1851~1852,1893,2112,2169,2394~
    2395,2421~2422
    rna:16:1M~119 861~863,915,917~919,958
    3900 4wqr:1J
    (3.15Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 26037619 Assembly2
    rna:14:1~2902 78~81,88,89A,96~97,99~100
    << < 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 > >>
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    Reference:
  • Chengxin Zhang, P. Lydia Freddolino (2023) FURNA: a database for function annotations of RNA structures, bioRxiv 2023.12.19.572314.

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