SEQ2FUN

FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    301 1s72:9
    (2.4Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 15184028 Assembly1
    rna:0:10~2914 80~83,87,91,100~105
    302 1sdr:A
    (2.6Å)
    		 12 N/A URS000080E1D4 N/A synthetic
    construct
    32630    		 7540215 Assembly1
    rna:B:13~24 1~12
    303 1sdr:B
    (2.6Å)
    		 12 N/A URS000022636A N/A synthetic
    construct
    32630    		 7540215 Assembly1
    rna:A:1~12 13~24
    304 1sdr:C
    (2.6Å)
    		 12 N/A URS000080E1D4 N/A synthetic
    construct
    32630    		 7540215 Assembly2
    rna:D:37~48 25~36
    305 1sdr:D
    (2.6Å)
    		 12 N/A URS000022636A N/A synthetic
    construct
    32630    		 7540215 Assembly2
    rna:C:25~36 37~48
    306 1sm1:0
    (3.42Å)
    		 2766 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02540
    RF02541    		 Deinococcus
    radiodurans
    1299    		 15059283 Assembly1
    rna:9:4~121 875~876,928~932,969,1038,2298
    307 1sm1:9
    (3.42Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000420396 RF00001 Deinococcus
    radiodurans
    1299    		 15059283 Assembly1
    rna:0:1~2877 15,80~83,90,92,100~103
    308 1t0d:A
    (2.2Å)
    		 17 N/A URS000080DDA2 N/A synthetic
    construct
    32630    		 15199571 Assembly1
    rna:B:20~35 1~8,10~17
    309 1t0d:B
    (2.2Å)
    		 16 N/A URS000080E0EC N/A synthetic
    construct
    32630    		 15199571 Assembly1
    rna:A:1~17 20~35
    310 1t0d:C
    (2.2Å)
    		 17 N/A URS000080DDA2 N/A synthetic
    construct
    32630    		 15199571 Assembly2
    rna:D:20~35 1~7,10~17
    311 1t0d:D
    (2.2Å)
    		 16 N/A URS000080E0EC N/A synthetic
    construct
    32630    		 15199571 Assembly2
    rna:C:1~17 20~35
    312 1t0e:A
    (1.7Å)
    		 18 N/A URS000080E32C N/A synthetic
    construct
    32630    		 15199571 Assembly1
    rna:C:9 1~7,10~18
    313 1t0e:C
    (1.7Å)
    		 17 N/A URS000080DD8F N/A synthetic
    construct
    32630    		 15199571 Assembly1
    rna:A:1~18 9~25
    314 1t0k:C
    (3.24Å)
    		 12 N/A URS000080DF01 N/A synthetic
    construct
    32630    		 15242593 Assembly1
    rna:D:50~64 6~17
    315 1t0k:D
    (3.24Å)
    		 15 N/A URS000080E32B N/A synthetic
    construct
    32630    		 15242593 Assembly1
    rna:C:6~17 50~56,58~64
    316 1tfw:E
    (2.2Å)
    		 12 N/A URS000080E084 N/A synthetic
    construct
    32630    		 15295590 Assembly1
    rna:H:63~75 1~11
    317 1tfw:F
    (2.2Å)
    		 12 N/A URS000080E24F N/A synthetic
    construct
    32630    		 15295590 Assembly2
    rna:I:63~75 1~11
    318 1tfw:G
    (2.2Å)
    		 13 N/A URS000080DED7 N/A synthetic
    construct
    32630    		 15295590 Assembly1
    rna:J:61~73 2~12
    319 1tfw:H
    (2.2Å)
    		 13 N/A URS000080DED7 N/A synthetic
    construct
    32630    		 15295590 Assembly1
    rna:E:1~12 63~73
    320 1tfw:I
    (2.2Å)
    		 13 N/A URS000080DED7 N/A synthetic
    construct
    32630    		 15295590 Assembly2
    rna:F:1~12 63~73
    321 1tfw:J
    (2.2Å)
    		 13 N/A URS000080DE69 N/A synthetic
    construct
    32630    		 15295590 Assembly1
    rna:G:2~14 61~70,72
    322 1tfy:E
    (3.2Å)
    		 13 N/A URS000080DEA7 N/A synthetic
    construct
    32630    		 15295590 Assembly1
    rna:H:61~74 1~13
    323 1tfy:F
    (3.2Å)
    		 13 N/A URS000080DEA7 N/A synthetic
    construct
    32630    		 15295590 Assembly2
    rna:I:61~74 1~11,13
    324 1tfy:G
    (3.2Å)
    		 11 N/A URS000080E30A N/A synthetic
    construct
    32630    		 15295590 Assembly1
    rna:J:61~68 5~12
    325 1tfy:H
    (3.2Å)
    		 14 N/A URS000080E0BD N/A synthetic
    construct
    32630    		 15295590 Assembly1
    rna:E:1~13 61~73
    326 1tfy:I
    (3.2Å)
    		 14 N/A URS000080E0BD N/A synthetic
    construct
    32630    		 15295590 Assembly2
    rna:F:1~13 61~73
    327 1tut:A

    		 11 N/A URS000080E0BE N/A synthetic
    construct
    32630    		 15595837 Assembly1
    rna:B:11B~21 1~11
    328 1tut:B

    		 11 N/A URS000080E140 N/A synthetic
    construct
    32630    		 15595837 Assembly1
    rna:A:1~11 11B,12~21
    329 1u1y:S
    (2.85Å)
    		 16 N/A URS000080DDEC N/A synthetic
    construct
    32630    		 15496523 Assembly1
    rna:S-6:102~117 102~108,111~117
    330 1u6b:B
    (3.1Å)
    		 197 GO:0000372 (P) Group I intron splicing URS000080E37C RF00028 synthetic
    construct
    32630    		 15175762 Assembly1
    rna:C:191~6 1,5~10,60~62,83~85,87,127~128,
    130,172,179~190
    rna:D:3~1 10~12,37,87~88,168~170
    331 1u6b:C
    (3.1Å)
    		 22 N/A URS000080E339 N/A synthetic
    construct
    32630    		 15175762 Assembly1
    rna:B:1~190 191~206,1~6
    332 1vq4:0
    (2.7Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    rna:4:74~174 2284~2286,2485~2487,2541~2542,
    2588~2590,2618~2620,2636~2637
    333 1vq4:9
    (2.7Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3105
    334 1vq5:0
    (2.6Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    rna:4:74~174 2284~2286,2485~2487,2541~2542,
    2588~2590,2618~2620,2636~2637
    335 1vq5:9
    (2.6Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3105
    336 1vq6:0
    (2.7Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 16306996
    16285925    		 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    rna:4:75~77 2486~2487,2541~2542,2588,2618~
    2620
    rna:5:74~78 2102,2105,2284~2286,2485~2486,
    2620,2637
    337 1vq6:9
    (2.7Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 16306996
    16285925    		 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3105
    338 1vq7:0
    (2.5Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 16306996
    16285925    		 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    rna:4:74~174 2284~2286,2474,2485~2487,2541~
    2542,2588~2590,2618~2620,2636~
    2637
    339 1vq7:9
    (2.5Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 16306996
    16285925    		 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3105
    340 1vq8:0
    (2.2Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    rna:4:74~78 2102,2104,2284~2286,2485~2486,
    2620,2636
    341 1vq8:9
    (2.2Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3101,
    3103~3105
    342 1vq9:0
    (2.4Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    rna:4:74~78 2102,2104,2284~2286,2485~2486,
    2620,2636
    343 1vq9:9
    (2.4Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3101,
    3103~3105
    344 1vqk:0
    (2.3Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    rna:4:74~78 2486~2487,2541~2542,2588~2590,
    2618~2620
    345 1vqk:9
    (2.3Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3105
    346 1vql:0
    (2.3Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    rna:4:74~174 2102,2284~2286,2485~2487,2541~
    2542,2588~2590,2618~2620,2636~
    2637
    347 1vql:9
    (2.3Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3105
    348 1vqm:0
    (2.3Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    rna:4:74~174 2284~2286,2485~2487,2541~2542,
    2588~2590,2618~2620,2636~2637
    349 1vqm:9
    (2.3Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3101,
    3103~3105
    350 1vqn:0
    (2.4Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 16306996
    16285925    		 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    rna:4:74~77 2486~2487,2541~2542,2588~2590,
    2618~2620,2637
    rna:5:74~79 2102~2104,2284~2286,2474,2485~
    2486,2540~2541,2620,2636~2637
    351 1vqn:9
    (2.4Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 16306996
    16285925    		 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3101,
    3103~3105
    352 1vqo:0
    (2.2Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    rna:4:74~76 2486~2487,2541~2542,2588~2590,
    2618~2620
    353 1vqo:9
    (2.2Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3105
    354 1vqp:0
    (2.25Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    rna:4:74~174 2284~2286,2485~2487,2541~2542,
    2588~2590,2618~2620,2636~2637
    355 1vqp:9
    (2.25Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3105
    356 1vvj:QA
    (3.44Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25128388 Assembly1
    rna:QV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:QX:1~8 926,1196,1397,1400~1402,1493,1
    498
    rna:QY:29~41 1054,1493
    rna:RA:6~2897 702,784,899,1407~1409,1418,142
    9,1443,1473~1475,1483~1485,149
    4~1495,1517
    357 1vvj:QV
    (3.44Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 25128388 Assembly1
    rna:QA:5~1531 29~31,34,38~41
    rna:QX:1~8 34~37
    rna:RA:6~2897 3,11~13,24~25,74~76
    358 1vvj:QY
    (3.44Å)
    		 14 N/A N/A N/A synthetic
    construct
    32630    		 25128388 Assembly1
    rna:QA:5~1531 34,37
    rna:QX:1~8 34~36
    359 1vvj:RA
    (3.44Å)
    		 2883 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFFB RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25128388 Assembly1
    rna:QA:5~1531 1689,1701~1704,1832,1836~1837,
    1846,1848,1895,1912~1913,1915~
    1916,1919~1920,1947~1949,1959~
    1961,2863~2864
    rna:QV:1~76 1907~1909,1922~1924,2064,2251~
    2253,2255,2450~2451,2602
    rna:RB:1~119 861~864,915,917~919,958
    rna:Z6:74~76 2061,2451~2452,2504,2507,2553,
    2555,2583~2585,2602
    360 1vvj:RB
    (3.44Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 25128388 Assembly1
    rna:RA:6~2897 78~81,89A,96~101
    361 1vvj:XA
    (3.44Å)
    		 1501 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25128388 Assembly2
    rna:XV:1~76 790,966,1229~1230,1338~1341,14
    00
    rna:XX:1~8 530,926,1397,1400~1402,1492~14
    93,1498
    rna:XY:29~41 530~531,1054,1493
    rna:YA:6~2897 702,783~784,899~900,1407~1409,
    1418,1420,1429,1443,1473~1475,
    1483~1485,1494~1496,1517
    362 1vvj:XV
    (3.44Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    str.
    K-12
    substr.
    MDS42
    1110693    		 25128388 Assembly2
    rna:XA:5~1531 29~32,34,40~41
    rna:XX:1~8 34~37
    rna:YA:6~2897 11~13,24~25,74~76
    363 1vvj:XY
    (3.44Å)
    		 14 N/A N/A N/A synthetic
    construct
    32630    		 25128388 Assembly2
    rna:XA:5~1531 34~37
    rna:XX:1~8 34~37
    rna:YA:6~2897 37,37A
    364 1vvj:YA
    (3.44Å)
    		 2882 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFFB RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25128388 Assembly2
    rna:XA:5~1531 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1950,1958~1961,
    2864
    rna:XV:1~76 1907~1909,1922~1924,2063,2251~
    2253,2450~2451,2602
    rna:YB:1~119 861~864,915~919,958
    rna:Z8:74~76 2451~2452,2504,2506~2507,2553~
    2555,2573,2583~2585
    365 1vvj:YB
    (3.44Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 25128388 Assembly2
    rna:YA:6~2897 78~81,89A,96~97,99~100
    366 1vy4:AA
    (2.6Å)
    		 1497 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25132179 Assembly1
    rna:AV:12~24 530,926,1196,1397,1400~1401,14
    92~1493,1498,1503,1505,1507
    rna:AW:1~76 530~531,1054,1493
    rna:AX:2~76 790,966,1229~1230,1338~1340,14
    00
    rna:BA:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1473~1475,1483
    ~1484,1494~1496,1517
    367 1vy4:AV
    (2.6Å)
    		 13 N/A N/A N/A synthetic
    construct
    32630    		 25132179 Assembly1
    rna:AA:4~1531 12~13,15~24
    rna:AW:1~76 19~21
    rna:AX:2~76 16~18
    368 1vy4:AW
    (2.6Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 25132179 Assembly1
    rna:AA:4~1531 34~37
    rna:AV:12~24 34~37
    rna:BA:6~2897 19,37~38,55~56,64,74~76
    369 1vy4:AX
    (2.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 25132179 Assembly1
    rna:AA:4~1531 29~32,34,38,40~41
    rna:AV:12~24 34~37
    rna:BA:6~2897 11~13,24~25,74~76
    370 1vy4:AY
    (2.6Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 25132179 Assembly1
    rna:BA:6~2897 19,56,76
    371 1vy4:BA
    (2.6Å)
    		 2819 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25132179 Assembly1
    rna:AA:4~1531 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1949,1959~1961,
    2863~2864
    rna:AW:1~76 882,896~897,1913,2451~2452,248
    3,2506~2507,2553~2555,2573,258
    3~2585,2602
    rna:AX:2~76 1907~1909,1922~1924,2061,2063,
    2251~2253,2439,2450~2451,2585,
    2601~2602
    rna:AY:1~76 1851,2112,2169,2394~2395,2421~
    2422,2432
    rna:BB:1~120 861~864,915,917~919,958
    372 1vy4:BB
    (2.6Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 25132179 Assembly1
    rna:BA:6~2897 78~81,90,97~98,100~101
    373 1vy4:CA
    (2.6Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25132179 Assembly2
    rna:CV:13~24 530,693,926,1196,1397,1400~140
    2,1492~1493,1498,1503,1505
    rna:CW:2~76 530,1054,1493
    rna:CX:2~76 790,966,1229~1230,1338~1340,14
    00
    rna:DA:6~2897 702,784,899~900,1407~1409,1418
    ,1429,1442A,1473~1475,1483~148
    4,1493~1496,1517
    374 1vy4:CV
    (2.6Å)
    		 12 N/A N/A N/A synthetic
    construct
    32630    		 25132179 Assembly2
    rna:CA:4~1532 13~24
    rna:CW:2~76 19~21
    rna:CX:2~76 16~18
    375 1vy4:CW
    (2.6Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 25132179 Assembly2
    rna:CA:4~1532 34~37
    rna:CV:13~24 34~37
    rna:DA:6~2897 19,37~38,55~56,64,74~76
    376 1vy4:CX
    (2.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 25132179 Assembly2
    rna:CA:4~1532 30~32,34,38,40~41
    rna:CV:13~24 34~37
    rna:CY:1~76 39~40
    rna:DA:6~2897 11~13,24~25,74~76
    377 1vy4:CY
    (2.6Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 25132179 Assembly2
    rna:CX:2~76 35~36
    rna:DA:6~2897 19,56,71~72,76
    378 1vy4:DA
    (2.6Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25132179 Assembly2
    rna:CA:4~1532 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1916,1919~1920,
    1947~1948,1959~1961,2863~2864
    rna:CW:2~76 882,896~897,1913,2451~2452,248
    2~2483,2506~2507,2553~2555,258
    3~2585,2602
    rna:CX:2~76 1907~1909,1922~1924,2251~2253,
    2439,2450~2451,2585,2601~2602
    rna:CY:1~76 1851~1852,2112,2169,2394~2395,
    2421~2422,2432
    rna:DB:1~120 861~864,915,918~919,958
    379 1vy4:DB
    (2.6Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 25132179 Assembly2
    rna:DA:6~2897 78~81,90,97~98,100~102
    380 1vy5:AA
    (2.55Å)
    		 1498 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25132179 Assembly1
    rna:AV:12~24 926,1196,1397,1400~1401,1492~1
    493,1498,1503,1505,1507
    rna:AW:1~76 530~531,1054,1493
    rna:AX:2~76 790,966,1229~1230,1338~1341,14
    00
    rna:BA:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1474~1475,1483
    ~1484,1494~1496,1517
    381 1vy5:AV
    (2.55Å)
    		 13 N/A N/A N/A synthetic
    construct
    32630    		 25132179 Assembly1
    rna:AA:4~1532 12~13,16~20,22~24
    rna:AW:1~76 19~21
    rna:AX:2~76 16~18
    382 1vy5:AW
    (2.55Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 25132179 Assembly1
    rna:AA:4~1532 34~37
    rna:AV:12~24 34~37
    rna:BA:6~2897 19,37~38,55~56,64,74~76
    383 1vy5:AX
    (2.55Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 25132179 Assembly1
    rna:AA:4~1532 29~32,34,38,40~41
    rna:AV:12~24 34~37
    rna:BA:6~2897 11~13,24~25,74~76
    384 1vy5:AY
    (2.55Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 25132179 Assembly1
    rna:BA:6~2897 4,19,56,71,76
    385 1vy5:BA
    (2.55Å)
    		 2819 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25132179 Assembly1
    rna:AA:4~1532 1689,1701,1703~1704,1832,1836~
    1837,1846,1848,1912~1916,1919~
    1920,1947~1949,1959~1961,2863~
    2864
    rna:AW:1~76 881~882,896~898,1913,2451~2452
    ,2483,2506~2507,2553~2555,2583
    ~2585,2602
    rna:AX:2~76 1907~1909,1922~1924,2251~2253,
    2439,2450~2451,2602
    rna:AY:1~76 1851,1885,2112,2169,2394~2395,
    2421~2422
    rna:BB:1~120 861~864,915,917~919,958
    386 1vy5:BB
    (2.55Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 25132179 Assembly1
    rna:BA:6~2897 78~81,90,97~98,100~102
    387 1vy5:CA
    (2.55Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25132179 Assembly2
    rna:CV:13~24 530,926,1196,1397,1400~1403,14
    92~1493,1498,1503,1505
    rna:CW:2~76 530,1054,1493
    rna:CX:2~76 790,966,1229~1230,1338~1340,14
    00
    rna:DA:6~2897 702,784,899~900,1407~1409,1418
    ,1429~1430,1442A,1473~1475,148
    3~1484,1493~1496,1517
    388 1vy5:CV
    (2.55Å)
    		 12 N/A N/A N/A synthetic
    construct
    32630    		 25132179 Assembly2
    rna:CA:4~1532 13,16~24
    rna:CW:2~76 19~21
    rna:CX:2~76 16~18
    389 1vy5:CW
    (2.55Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 25132179 Assembly2
    rna:CA:4~1532 34~37
    rna:CV:13~24 34~37
    rna:DA:6~2897 19,38,56,64,74~76
    390 1vy5:CX
    (2.55Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 25132179 Assembly2
    rna:CA:4~1532 30~32,34,38,40~41
    rna:CV:13~24 34~37
    rna:DA:6~2897 12~13,24~25,74~76
    391 1vy5:CY
    (2.55Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 25132179 Assembly2
    rna:CA:4~1532 37~38
    rna:DA:6~2897 19,56,71~72,76
    392 1vy5:DA
    (2.55Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25132179 Assembly2
    rna:CA:4~1532 1689,1700~1704,1832,1836~1837,
    1846,1848,1895,1912~1916,1919~
    1920,1947~1948,1959~1961,2864
    rna:CW:2~76 882,896~897,1913,2063,2451~245
    2,2483,2506~2507,2553~2555,258
    3~2585,2602
    rna:CX:2~76 1907~1909,1922~1924,2251~2253,
    2439,2451,2585,2601~2602
    rna:CY:1~76 1851~1852,2112,2169,2394~2395,
    2421~2422,2432
    rna:DB:1~120 861~864,915,917~919,958
    393 1vy5:DB
    (2.55Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 25132179 Assembly2
    rna:DA:6~2897 78~81,90,97~98,100~102
    394 1vy6:AA
    (2.9Å)
    		 1498 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25132179 Assembly1
    rna:AV:12~24 530,926,1196,1397,1400~1401,14
    92~1493,1498,1503,1505,1507
    rna:AX:2~76 790,966,1229~1230,1338~1340,14
    00
    rna:BA:6~2897 702,783~784,899~900,1407~1409,
    1418,1420,1429,1442A,1474~1475
    ,1483~1485,1493~1496,1517
    395 1vy6:AV
    (2.9Å)
    		 13 N/A N/A N/A synthetic
    construct
    32630    		 25132179 Assembly1
    rna:AA:4~1532 12~13,16~24
    rna:AX:2~76 16~18
    396 1vy6:AX
    (2.9Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 25132179 Assembly1
    rna:AA:4~1532 30~32,34,38,40~41
    rna:AV:12~24 34~37
    rna:BA:6~2897 3,11~13,24~25,74~76
    397 1vy6:BA
    (2.9Å)
    		 2819 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25132179 Assembly1
    rna:AA:4~1532 1689,1703~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1948,1950,1959~
    1961,2863~2864
    rna:AW:75~76 2451~2452,2504,2506~2507,2553,
    2573,2583~2585,2602
    rna:AX:2~76 1907~1909,1922~1924,2063,2251~
    2253,2255,2439,2450~2451,2506,
    2585,2601~2602
    rna:BB:1~120 861~863,915,917~919,958
    398 1vy6:BB
    (2.9Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 25132179 Assembly1
    rna:BA:6~2897 78~81,90,97~98,100~101
    399 1vy6:CA
    (2.9Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25132179 Assembly2
    rna:CV:13~24 693,926,1397,1400~1401,1492~14
    93,1498,1503
    rna:CX:2~76 790,966,1229~1230,1338~1340,14
    00
    rna:DA:6~2897 702,783~784,899,1407~1409,1418
    ,1420,1429~1430,1442A,1473~147
    5,1483~1485,1493~1496,1517
    400 1vy6:CV
    (2.9Å)
    		 12 N/A N/A N/A synthetic
    construct
    32630    		 25132179 Assembly2
    rna:CA:4~1532 13~14,16~20,22~23
    rna:CX:2~76 16~18
    << < 1 2 3 4 5 6 7 8 9 10 11 12 13 14 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.