SEQ2FUN

FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    4101 4y4p:1A
    (2.5Å)
    		 2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25775268 Assembly1
    rna:1B:1~120 908~911,961,963~965,1003
    rna:1a:4~1533 1736,1748~1751,1863,1867~1868,
    1877,1879,1934~1935,1937~1938,
    1941~1942,1969~1971,1981~1983,
    2873~2874
    rna:1w:1~76 928~929,943,1935,1964,2494~249
    5,2518~2519,2565~2567,2585,259
    5~2597,2614
    rna:1x:2~76 1929~1931,1944~1946,2263~2265,
    2462~2463,2613~2614
    rna:1y:1~76 1882,2134,2191,2406~2407,2433~
    2434
    4102 4y4p:1B
    (2.5Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 25775268 Assembly1
    rna:1A:6~2906 78~81,90,97~98,100~102
    4103 4y4p:1a
    (2.5Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25775268 Assembly1
    rna:1A:6~2906 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1473~1475,1483
    ~1484,1494~1496,1517
    rna:1v:12~24 530,926,1196,1397,1400~1402,14
    92~1493,1498,1503~1505,1507
    rna:1w:1~76 530~531,1054,1493
    rna:1x:2~76 790,966,1229~1230,1338~1340,14
    00
    4104 4y4p:1v
    (2.5Å)
    		 13 N/A N/A N/A Tequatrovirus
    T4
    10665    		 25775268 Assembly1
    rna:1a:4~1533 12~13,15~24
    rna:1w:1~76 19~21
    rna:1x:2~76 16~18
    4105 4y4p:1w
    (2.5Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 25775268 Assembly1
    rna:1A:6~2906 19,37~38,56,64,71,74~76
    rna:1a:4~1533 34~37
    rna:1v:12~24 34~37
    4106 4y4p:1x
    (2.5Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 25775268 Assembly1
    rna:1A:6~2906 11~13,24~25,74~76
    rna:1a:4~1533 29~32,34,38~41
    rna:1v:12~24 34~37
    4107 4y4p:1y
    (2.5Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 25775268 Assembly1
    rna:1A:6~2906 19,56,72,76
    rna:1x:2~76 35~36
    4108 4y4p:2A
    (2.5Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25775268 Assembly2
    rna:2B:1~120 861~864,915~918,958
    rna:2a:4~1532 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1949,1959~1961,
    2864
    rna:2w:2~76 882,897,1913,2482~2483,2506~25
    07,2553~2555,2583~2585,2602
    rna:2x:2~76 1907~1909,1922~1924,2251~2253,
    2439,2450~2451,2601~2602
    rna:2y:1~76 1851,1885,2112,2169,2394~2395,
    2421~2422,2432
    4109 4y4p:2B
    (2.5Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 25775268 Assembly2
    rna:2A:6~2897 78~81,90,97~98,100~102
    4110 4y4p:2a
    (2.5Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25775268 Assembly2
    rna:2A:6~2897 702,784,899,1407~1409,1418,142
    9~1430,1442A,1473~1475,1483~14
    84,1494~1496,1517
    rna:2v:12~24 530,926,1196,1397,1400~1402,14
    92~1493,1498,1503,1505,1507
    rna:2w:2~76 530,1054,1493
    rna:2x:2~76 790,966,1229~1230,1338~1340,14
    00
    4111 4y4p:2v
    (2.5Å)
    		 13 N/A N/A N/A Tequatrovirus
    T4
    10665    		 25775268 Assembly2
    rna:2a:4~1532 12~13,15~24
    rna:2w:2~76 19~21
    rna:2x:2~76 16~18
    rna:2y:1~76 14~15
    4112 4y4p:2w
    (2.5Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 25775268 Assembly2
    rna:2A:6~2897 19,37~38,55~56,64,74~76
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    4113 4y4p:2x
    (2.5Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 25775268 Assembly2
    rna:2A:6~2897 11~13,24~25,74~76
    rna:2a:4~1532 30~32,34,38~41
    rna:2v:12~24 34~37
    rna:2y:1~76 39~40
    4114 4y4p:2y
    (2.5Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 25775268 Assembly2
    rna:2A:6~2897 19,56,71~72,76
    rna:2x:2~76 35~36
    4115 4ybb:AA
    (2.1Å)
    		 1534 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 25775265 Assembly1
    rna:DA:1~2903 702,784,899,1407~1409,1418,142
    0,1428~1429,1473~1475,1483~148
    4,1491,1493~1496,1517
    4116 4ybb:BA
    (2.1Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 25775265 Assembly2
    rna:CA:1~2904 702,783~784,899,1407~1409,1418
    ,1420,1428~1430,1473~1475,1483
    ~1484,1492~1496,1517
    4117 4ybb:CA
    (2.1Å)
    		 2898 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 25775265 Assembly2
    rna:BA:2~1534 1686,1689,1700~1704,1832,1836~
    1837,1846,1848,1912~1913,1915~
    1916,1919~1920,1947~1948,1950,
    1959~1961
    rna:CB:2~119 861~864,915~919,958
    4118 4ybb:CB
    (2.1Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    K-12
    83333    		 25775265 Assembly2
    rna:CA:1~2904 78~81,89~90,96~97,99~100
    4119 4ybb:DA
    (2.1Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 25775265 Assembly1
    rna:AA:1~1534 1689,1700~1704,1832,1837,1846~
    1847,1912~1916,1919~1920,1947~
    1948,1950,1959~1961
    rna:DB:1~120 861~864,915,917~919,958,2339
    4120 4ybb:DB
    (2.1Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    K-12
    83333    		 25775265 Assembly1
    rna:DA:1~2903 41,78~81,89~90,96~97,99~100
    4121 4yhw:C
    (3.25Å)
    		 17 N/A URS0000868549 N/A Saccharomyces
    cerevisiae
    4932    		 26161500 Assembly1
    rna:E:64~90 1~11,13~17
    4122 4yhw:D
    (3.25Å)
    		 17 N/A URS0000868549 N/A Saccharomyces
    cerevisiae
    4932    		 26161500 Assembly2
    rna:F:64~90 1~11,13~17
    4123 4yhw:E
    (3.25Å)
    		 27 N/A URS0000868515 N/A Saccharomyces
    cerevisiae
    4932    		 26161500 Assembly1
    rna:C:1~17 64~80
    4124 4yhw:F
    (3.25Å)
    		 27 N/A URS0000868515 N/A Saccharomyces
    cerevisiae
    4932    		 26161500 Assembly2
    rna:D:1~17 64~68,70~81
    4125 4yn6:A
    (2.301Å)
    		 19 N/A URS000080E08C N/A synthetic
    construct
    32630    		 26148061 Assembly1
    rna:B:1~19 1,3~19
    4126 4yn6:B
    (2.301Å)
    		 19 N/A URS000080E08C N/A synthetic
    construct
    32630    		 26148061 Assembly1
    rna:A:1~19 1,3~19
    4127 4ypb:QA
    (3.4Å)
    		 1511 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26508639 Assembly1
    rna:QV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:QW:1~76 693~694,1340,1382
    rna:QX:3~22 530,926,1054,1196,1400~1401,14
    98,1503,1505,1532,1534~1537,15
    41
    rna:RA:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1474~1475,1483
    ~1484,1491~1496,1517
    4128 4ypb:QV
    (3.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 26508639 Assembly1
    rna:QA:3~1542 30~31,34,38~41
    rna:QX:3~22 34~37
    rna:RA:6~2897 11~13,24~25,74~76
    4129 4ypb:QW
    (3.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 26508639 Assembly1
    rna:QA:3~1542 34,36~38
    rna:QX:3~22 34~35
    rna:RA:6~2897 4,19,56,71,76
    4130 4ypb:QX
    (3.4Å)
    		 20 N/A N/A N/A Escherichia
    coli
    562    		 26508639 Assembly1
    rna:QA:3~1542 4,8~13,15~18,21~22
    rna:QV:1~76 16~19
    rna:QW:1~76 14~15
    4131 4ypb:RA
    (3.4Å)
    		 2891 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFFB RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 26508639 Assembly1
    rna:QA:3~1542 1689,1700~1701,1703~1704,1832,
    1836~1837,1846,1848,1895,1912~
    1913,1915~1916,1919~1920,1947~
    1949,1959~1960,2863~2864
    rna:QV:1~76 1907~1909,1922~1924,2064,2251~
    2253,2450~2451,2601~2602
    rna:QW:1~76 1851,2112,2169,2394~2395,2421~
    2422,2432
    rna:RB:1M~119 861~864,915,917~919,958
    4132 4ypb:RB
    (3.4Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E212 RF00001 Thermus
    thermophilus
    HB8
    300852    		 26508639 Assembly1
    rna:RA:6~2897 78~81,89A,96~100
    4133 4ypb:XA
    (3.4Å)
    		 1508 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26508639 Assembly2
    rna:XV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:XX:3~22 530,926,1054,1196,1400~1401,14
    98,1505,1507,1532,1534~1536,15
    39,1541~1542
    rna:YA:6~2897 702,784,899,1407~1409,1418,142
    9,1442A,1473~1475,1483~1484,14
    92~1496,1517
    4134 4ypb:XV
    (3.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 26508639 Assembly2
    rna:XA:3~1542 29~32,34,38,40~41
    rna:XX:3~22 34~37
    rna:YA:6~2897 11~13,24~25,74~76
    4135 4ypb:XW
    (3.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 26508639 Assembly2
    rna:YA:6~2897 71~72,76
    4136 4ypb:XX
    (3.4Å)
    		 20 N/A N/A N/A Escherichia
    coli
    562    		 26508639 Assembly2
    rna:XA:3~1542 3,7,9~10,12~13,15~18,21~22
    rna:XV:1~76 16~19
    4137 4ypb:YA
    (3.4Å)
    		 2875 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFFB RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 26508639 Assembly2
    rna:XA:3~1542 1689,1700~1704,1832,1837,1846,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1948,1959~1961,2863~
    2864
    rna:XV:1~76 1907~1909,1922~1924,2251~2253,
    2255,2450~2451,2601~2602
    rna:XW:1~76 1851,2394~2395,2421~2422,2432
    rna:YB:1M~119 861~863,915,917~919,958
    4138 4ypb:YB
    (3.4Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E212 RF00001 Thermus
    thermophilus
    HB8
    300852    		 26508639 Assembly2
    rna:YA:6~2897 78~81,89A,96~97,99~100
    4139 4yzv:QA
    (3.1Å)
    		 1511 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26508639 Assembly1
    rna:QV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:QX:3~22 530,926,1054,1400~1401,1498,15
    03,1505~1506,1532,1534,1536~15
    37,1541
    rna:RA:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1443,1473~1475,1483~
    1484,1492~1496,1517
    4140 4yzv:QV
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 26508639 Assembly1
    rna:QA:3~1542 30~32,34,38~41
    rna:QX:3~22 34~37
    rna:RA:6~2897 11~13,24~25,74~76
    4141 4yzv:QX
    (3.1Å)
    		 20 N/A N/A N/A Escherichia
    coli
    562    		 26508639 Assembly1
    rna:QA:3~1542 3~4,8~13,15~18,21~22
    rna:QV:1~76 16~19
    4142 4yzv:RA
    (3.1Å)
    		 2891 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFFB RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 26508639 Assembly1
    rna:QA:3~1542 1689,1700~1704,1832,1836~1837,
    1846,1848,1895,1912~1913,1915~
    1916,1919~1920,1947~1948,1959~
    1961,2863~2864
    rna:QV:1~76 1907~1909,1922~1924,2251~2253,
    2450~2451,2601~2602
    rna:RB:1M~119 861~864,915,917~919,958
    rna:Z7:74~76 2061,2451~2452,2506~2507,2553~
    2555,2583~2585,2602
    4143 4yzv:RB
    (3.1Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E212 RF00001 Thermus
    thermophilus
    HB8
    300852    		 26508639 Assembly1
    rna:RA:6~2897 78~81,89A,96~97,99~100
    4144 4yzv:XA
    (3.1Å)
    		 1508 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26508639 Assembly2
    rna:XV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:XX:3~22 530,926,1400~1401,1498,1505,15
    07,1532,1534~1536,1539,1541
    rna:YA:6~2897 702,784,899,1407~1409,1418,142
    9,1443,1473~1475,1483~1484,149
    3~1496,1517
    4145 4yzv:XV
    (3.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 26508639 Assembly2
    rna:XA:3~1542 29~32,34,38~41
    rna:XX:3~22 34~37
    rna:YA:6~2897 11~13,24~25,74~76
    4146 4yzv:XX
    (3.1Å)
    		 20 N/A N/A N/A Escherichia
    coli
    562    		 26508639 Assembly2
    rna:XA:3~1542 3,7,9~13,15~18,21
    rna:XV:1~76 16~19
    4147 4yzv:YA
    (3.1Å)
    		 2875 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFFB RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 26508639 Assembly2
    rna:XA:3~1542 1689,1701~1704,1832,1836~1837,
    1846,1848,1895,1912~1913,1915~
    1916,1919~1920,1947~1949,1959~
    1961,2863~2864
    rna:XV:1~76 1907~1909,1922~1924,2064,2251~
    2253,2450~2451,2601~2602
    rna:YB:1M~119 861~863,915,917~919,958
    rna:Z6:74~76 2451~2452,2506~2507,2553~2555,
    2583~2584,2602
    4148 4yzv:YB
    (3.1Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E212 RF00001 Thermus
    thermophilus
    HB8
    300852    		 26508639 Assembly2
    rna:YA:6~2897 78~81,89A,96~97,99~100
    4149 4z31:C
    (2.5Å)
    		 14 N/A URS0000868522 N/A Homo
    sapiens
    9606    		 26489670 Assembly1
    rna:D:1~14 2~15
    4150 4z31:D
    (2.5Å)
    		 14 N/A URS0000868522 N/A Homo
    sapiens
    9606    		 26489670 Assembly1
    rna:C:2~15 1~14
    4151 4z3s:1A
    (2.65Å)
    		 2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 26028538 Assembly1
    rna:1B:1~120 861~864,915~919,958
    rna:1a:4~1533 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1916,1919~1920,
    1947~1949,1959~1961,2863~2864
    rna:1w:1~76 881~882,896~897,1913,2482~2483
    ,2507~2508,2553,2555,2602
    rna:1x:2~76 1907~1909,1922~1924,2063,2251~
    2253,2255,2439,2450~2451,2601~
    2602
    rna:1y:1~76 1851,2112,2169,2394~2395,2421~
    2422
    4152 4z3s:1B
    (2.65Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 26028538 Assembly1
    rna:1A:6~2897 78~81,90,97~98,100~102
    4153 4z3s:1a
    (2.65Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26028538 Assembly1
    rna:1A:6~2897 702,784,899~900,1407~1409,1418
    ,1429,1442A,1473~1475,1483~148
    5,1494~1496,1517
    rna:1v:12~25 530,926,1196,1397,1400~1401,14
    92~1493,1498,1503,1505,1507
    rna:1w:1~76 530~531,1054,1493
    rna:1x:2~76 790,966,1229~1230,1338~1340,14
    00
    4154 4z3s:1v
    (2.65Å)
    		 14 N/A N/A N/A Tequatrovirus
    T4
    10665    		 26028538 Assembly1
    rna:1a:4~1533 12~13,15~24
    rna:1w:1~76 19~21
    rna:1x:2~76 16~18
    4155 4z3s:1w
    (2.65Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 26028538 Assembly1
    rna:1A:6~2897 19,37~38,55~56,64,75~76
    rna:1a:4~1533 34~37
    rna:1v:12~25 34~37
    4156 4z3s:1x
    (2.65Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 26028538 Assembly1
    rna:1A:6~2897 3,11~13,24~25,74~76
    rna:1a:4~1533 29~32,34,38,40~41
    rna:1v:12~25 34~37
    rna:1y:1~76 39~40
    4157 4z3s:1y
    (2.65Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 26028538 Assembly1
    rna:1A:6~2897 19,56,72,76
    rna:1x:2~76 35~36
    4158 4z3s:2A
    (2.65Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 26028538 Assembly2
    rna:2B:1~120 861~864,915,917~919,958
    rna:2a:4~1532 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1916,1919~1920,
    1947~1949,1959~1961,2864
    rna:2w:1~76 881~882,896~897,1913,2483,2507
    ,2555,2602
    rna:2x:2~76 1907~1909,1922~1924,2063,2251~
    2253,2255,2439,2450~2451,2601~
    2602
    rna:2y:1~76 1851,2112,2169,2394~2395,2421~
    2422,2432
    4159 4z3s:2B
    (2.65Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 26028538 Assembly2
    rna:2A:6~2897 78~81,90,97~98,100~102
    4160 4z3s:2a
    (2.65Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 26028538 Assembly2
    rna:2A:6~2897 702,784,899~900,1407~1409,1418
    ,1429,1442A,1473~1475,1483~148
    4,1493~1496,1517
    rna:2v:12~24 926,1196,1397,1400~1402,1492~1
    493,1498,1503,1505,1507
    rna:2w:1~76 530,1054,1493
    rna:2x:2~76 790,966,1229,1338~1340,1400
    4161 4z3s:2v
    (2.65Å)
    		 13 N/A N/A N/A Tequatrovirus
    T4
    10665    		 26028538 Assembly2
    rna:2a:4~1532 12~13,15~20,23~24
    rna:2w:1~76 19~21
    rna:2x:2~76 16~18
    4162 4z3s:2w
    (2.65Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 26028538 Assembly2
    rna:2A:6~2897 19,37~38,56,64,75~76
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    4163 4z3s:2x
    (2.65Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 26028538 Assembly2
    rna:2A:6~2897 2~3,11~13,24~25,74~76
    rna:2a:4~1532 29~32,34,38~41
    rna:2v:12~24 34~37
    4164 4z3s:2y
    (2.65Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 26028538 Assembly2
    rna:2A:6~2897 19,56,71~72,76
    rna:2x:2~76 35~36
    4165 4z4c:B
    (2.303Å)
    		 19 N/A URS000080E33F N/A synthetic
    construct
    32630    		 26359634 Assembly1
    rna:D:1~9 2~9
    4166 4z4d:B
    (1.6Å)
    		 20 N/A URS000080E33F N/A synthetic
    construct
    32630    		 26359634 Assembly1
    rna:D:1~9 2~9
    4167 4z4e:B
    (1.8Å)
    		 19 N/A URS000080E33F N/A synthetic
    construct
    32630    		 26359634 Assembly1
    rna:D:1~9 2~9
    4168 4z4f:B
    (2.8Å)
    		 18 N/A URS000080E33F N/A synthetic
    construct
    32630    		 26359634 Assembly1
    rna:D:1~10 2~9
    4169 4z4f:D
    (2.8Å)
    		 10 N/A URS0000868548 N/A synthetic
    construct
    32630    		 26359634 Assembly1
    rna:B:1~21 1~8
    4170 4z4g:B
    (2.7Å)
    		 20 N/A URS000080E33F N/A synthetic
    construct
    32630    		 26359634 Assembly1
    rna:D:1~9 2~9
    4171 4z4h:B
    (2.504Å)
    		 20 N/A URS000080E33F N/A synthetic
    construct
    32630    		 26359634 Assembly1
    rna:D:1~8 2~9
    4172 4z4i:B
    (2.801Å)
    		 20 N/A URS000080E33F N/A synthetic
    construct
    32630    		 26359634 Assembly1
    rna:D:1~8 2~9
    4173 4z8c:1A
    (2.9Å)
    		 2746 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25984972 Assembly1
    rna:1B:1~120 907~910,960,962~964,1002
    rna:1a:5~1509 1735,1746~1750,1862,1866~1867,
    1876,1878,1933~1937,1940~1941,
    1968~1969,1980~1982,2872~2873
    rna:1x:2~76 1928~1930,1943~1945,2262~2264,
    2266,2461~2462,2613
    4174 4z8c:1B
    (2.9Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 25984972 Assembly1
    rna:1A:5~2905 78~81,90,97~98,100~102
    4175 4z8c:1a
    (2.9Å)
    		 1477 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25984972 Assembly1
    rna:1A:5~2905 686,767~768,877,1390~1392,1401
    ,1412,1426,1451~1453,1461~1462
    ,1472~1474,1495
    rna:1v:14~18 677,904,1383~1384,1476,1483
    rna:1x:2~76 774,944,1211~1212,1320~1322,13
    83
    4176 4z8c:1x
    (2.9Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 25984972 Assembly1
    rna:1A:5~2905 2~3,11~13,24~25,74~76
    rna:1a:5~1509 30~32,34,38~41
    rna:1v:14~18 34~37
    4177 4z8c:2A
    (2.9Å)
    		 2790 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25984972 Assembly2
    rna:2B:1~120 907~910,960,962~964,1002
    rna:2a:5~1510 1735,1746~1750,1862,1866~1867,
    1876,1878,1916,1933~1937,1940~
    1941,1968~1969,1980~1982,2872~
    2873
    rna:2x:2~76 1928~1930,1943~1945,2262~2264,
    2266,2461~2462,2612~2613
    4178 4z8c:2B
    (2.9Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 25984972 Assembly2
    rna:2A:5~2905 78~81,90,97~98,100~102
    4179 4z8c:2a
    (2.9Å)
    		 1483 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25984972 Assembly2
    rna:2A:5~2905 686,767~768,877,1390~1392,1401
    ,1412~1413,1426,1451~1453,1461
    ~1462,1472~1474,1495
    rna:2v:14~18 677,904,1383~1385,1476,1483
    rna:2x:2~76 774,944,1211~1212,1320~1322,13
    83
    4180 4z8c:2x
    (2.9Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 25984972 Assembly2
    rna:2A:5~2905 2~3,11~13,24~25,74~76
    rna:2a:5~1510 30~32,34,38~41
    rna:2v:14~18 34~37
    4181 4zc7:A
    (3.041Å)
    		 21 N/A URS0000868553 N/A synthetic
    construct
    32630    		 26264664 Assembly1
    rna:B:26~46 3~8,11~16,19~23
    4182 4zc7:B
    (3.041Å)
    		 20 N/A URS0000868553 N/A synthetic
    construct
    32630    		 26264664 Assembly1
    rna:A:3~23 26~39,42~46
    4183 4zc7:C
    (3.041Å)
    		 21 N/A URS0000868553 N/A synthetic
    construct
    32630    		 26264664 Assembly2
    rna:D:26~46 3~16,19~23
    4184 4zc7:D
    (3.041Å)
    		 20 N/A URS0000868553 N/A synthetic
    construct
    32630    		 26264664 Assembly2
    rna:C:3~23 26~40,42~46
    4185 4zer:1A
    (3.1Å)
    		 2824 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25984971 Assembly1
    rna:1B:1~120 908~910,961,963~965,1003
    rna:1a:4~1533 1736,1748~1751,1863,1867~1868,
    1877,1879,1934~1935,1937~1938,
    1941~1942,1969~1970,1981~1983,
    2873~2874
    rna:1x:2~76 1929~1931,1944~1946,2086,2263~
    2265,2267,2462~2463,2614
    4186 4zer:1B
    (3.1Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFF2 RF00001 Thermus
    thermophilus
    HB8
    300852    		 25984971 Assembly1
    rna:1A:6~2906 78~81,90,97~98,100~101
    4187 4zer:1a
    (3.1Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25984971 Assembly1
    rna:1A:6~2906 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1473~1475,1483
    ~1484,1492~1496,1517
    rna:1x:2~76 790,966,1229~1230,1338~1341,14
    00
    rna:B:114~116 926,1400,1498
    4188 4zer:1x
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002905B5 RF00005 Escherichia
    coli
    K-12
    83333    		 25984971 Assembly1
    rna:1A:6~2906 2~3,11~13,24~25,74~76
    rna:1a:4~1533 30~32,34,38,40~41
    rna:B:114~116 34~37
    4189 4zer:2A
    (3.1Å)
    		 2869 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 25984971 Assembly2
    rna:2B:1~120 861~864,915,917~919,958
    rna:2a:4~1533 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1916,1919~1920,
    1947~1948,1959~1961,2863~2864
    rna:2x:2~76 1907~1909,1923~1924,2251~2253,
    2255,2450~2451,2602
    4190 4zer:2B
    (3.1Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFF2 RF00001 Thermus
    thermophilus
    HB8
    300852    		 25984971 Assembly2
    rna:2A:6~2897 78~81,90,97~98,100~102
    4191 4zer:2a
    (3.1Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 25984971 Assembly2
    rna:2A:6~2897 702,783~784,899,1407~1409,1418
    ,1429~1430,1442A,1473~1475,148
    3~1484,1492~1496,1517
    rna:2x:2~76 790,966,1229~1230,1338~1340,14
    00
    rna:A:111~113 926,1400~1402,1498
    4192 4zer:2x
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002905B5 RF00005 Escherichia
    coli
    K-12
    83333    		 25984971 Assembly2
    rna:2A:6~2897 2~3,11~13,24~25,74~76
    rna:2a:4~1533 30~31,34,38,40~41
    rna:A:111~113 34~37
    4193 4zsn:QA
    (3.6Å)
    		 1511 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 27378776 Assembly1
    rna:QV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:QX:3~22 530,926,1054,1400~1401,1498,15
    03,1505,1532,1534,1536~1537
    rna:RA:6~2897 702,783~784,899,1407~1409,1418
    ,1429,1443,1473~1475,1483~1484
    ,1492~1496,1517
    4194 4zsn:QV
    (3.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 27378776 Assembly1
    rna:QA:3~1542 30~32,34,38~41
    rna:QX:3~22 34~37
    rna:RA:6~2897 11~13,24~25,74~76
    4195 4zsn:QX
    (3.6Å)
    		 20 N/A N/A N/A synthetic
    construct
    32630    		 27378776 Assembly1
    rna:QA:3~1542 8~13,16~18,21~22
    rna:QV:1~76 16~19
    4196 4zsn:RA
    (3.6Å)
    		 2891 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFFB RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 27378776 Assembly1
    rna:QA:3~1542 1689,1700~1704,1832,1836~1837,
    1848,1895,1912~1913,1915~1916,
    1919~1920,1947~1948,1959~1961,
    2863~2864
    rna:QV:1~76 1907~1909,1922~1924,2251~2253,
    2450~2451,2601~2602
    rna:RB:1M~119 861~864,915,917~919,958
    rna:Z7:74~76 2061,2451~2452,2506~2507,2553,
    2555,2583~2585,2602
    4197 4zsn:RB
    (3.6Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E212 RF00001 Thermus
    thermophilus
    HB8
    300852    		 27378776 Assembly1
    rna:RA:6~2897 78~81,89A,96~97,99~100
    4198 4zsn:XA
    (3.6Å)
    		 1508 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 27378776 Assembly2
    rna:XV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:XX:3~22 530,926,1196,1400~1401,1498,15
    03,1505,1507,1532,1534~1536,15
    39,1541~1542
    rna:YA:6~2897 702,784,899,1407~1409,1418,142
    9,1443,1473~1475,1483~1484,149
    3~1496,1517
    4199 4zsn:XV
    (3.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 27378776 Assembly2
    rna:XA:3~1542 29~32,34,38~41
    rna:XX:3~22 34~37
    rna:YA:6~2897 11~13,24~25,74~76
    4200 4zsn:XX
    (3.6Å)
    		 20 N/A N/A N/A synthetic
    construct
    32630    		 27378776 Assembly2
    rna:XA:3~1542 3,7~13,15~18,21~22
    rna:XV:1~76 16~19
    << < 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.