SEQ2FUN

FURNA
Download all results in tab-seperated text for 16611 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    4301 5czp:YB
    (3.29996Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 27681416 Assembly1
    rna:YA:6~2897 78~81,90,97~98,100~101
    4302 5d8b:AD
    (3.63Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000039883D RF00001 Thermus
    thermophilus
    HB27
    262724    		 26412335 Assembly2
    rna:ZC:6~2897 78~81,89B,97,99~100
    4303 5d8b:BD
    (3.63Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 26412335 Assembly2
    rna:ZC:6~2897 17A,19,56,71~72,76
    4304 5d8b:ED
    (3.63Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 26412335 Assembly1
    rna:UC:5~1531 30~32,34,38,40~41
    rna:VC:6~2897 11~13,24~25,74~76
    rna:GD:13~20 35~37
    4305 5d8b:FD
    (3.63Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 26412335 Assembly2
    rna:YC:5~1531 30~32,34,38,40~41
    rna:ZC:6~2897 2~3,11~13,24~25,74~76
    rna:HD:13~20 35~37
    4306 5d8b:UC
    (3.63Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000086852E RF00177 Thermus
    thermophilus
    HB27
    262724    		 26412335 Assembly1
    rna:VC:6~2897 702,783~784,899,1407~1409,1418
    ,1429~1430,1443,1473~1475,1483
    ~1484,1492~1496,1517
    rna:ED:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:GD:13~20 693,926,1400~1401,1493,1498
    4307 5d8b:VC
    (3.63Å)
    		 2879 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000056A434 RF02541 Thermus
    thermophilus
    HB27
    262724    		 26412335 Assembly1
    rna:UC:5~1531 1689,1700~1704,1832,1836~1837,
    1848,1912~1913,1916,1919~1920,
    1948,1959~1960,2863~2864
    rna:WC:1~118 861~863,915,917~919,958
    rna:XC:1~76 1851~1852,2112,2169,2394~2395,
    2421~2422
    rna:ED:1~76 1907~1909,1922~1924,2064,2251~
    2253,2255,2451,2585,2602
    4308 5d8b:WC
    (3.63Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000039883D RF00001 Thermus
    thermophilus
    HB27
    262724    		 26412335 Assembly1
    rna:VC:6~2897 78~81,89B,97,99~100
    4309 5d8b:XC
    (3.63Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 26412335 Assembly1
    rna:VC:6~2897 19,56,71~72,76
    rna:GD:13~20 34~35
    4310 5d8b:YC
    (3.63Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000086852E RF00177 Thermus
    thermophilus
    HB27
    262724    		 26412335 Assembly2
    rna:ZC:6~2897 702,783~784,899,1407~1409,1418
    ~1420,1429,1443,1473~1474,1483
    ~1485,1492~1496,1517
    rna:FD:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:HD:13~20 693,926,1400~1402,1493,1498
    4311 5d8b:ZC
    (3.63Å)
    		 2879 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000056A434 RF02541 Thermus
    thermophilus
    HB27
    262724    		 26412335 Assembly2
    rna:YC:5~1531 1702~1704,1832,1836~1837,1846,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1950,1959~1961,2864
    rna:AD:1~118 861~863,915,917~919,958
    rna:BD:1~76 1851~1852,2112,2169,2180,2394~
    2395,2421~2422,2432
    rna:FD:1~76 1907~1909,1922~1924,2064,2251~
    2253,2255,2450~2451,2585,2602
    4312 5da6:A
    (1.05Å)
    		 32 N/A URS00008FED44 N/A Trypanosoma
    brucei
    5691    		 27050127 Assembly1
    rna:A-2:1~32 1~32
    4313 5dat:1
    (3.15Å)
    		 3149 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly2
    rna:2:1~1798 846~848,1935~1936,2126,2255,22
    58~2259,2262~2263,2290~2292,23
    02~2304
    rna:3:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1203
    rna:4:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1398~139
    9,1418~1420,1441,1530,1558,158
    4~1585,1618~1619,1830~1832,238
    6~2387,2585,2994~2995
    4314 5dat:2
    (3.15Å)
    		 1781 GO:0003735 (F) structural constituent ...
    GO:0061770 (F) translation elongation ...
    GO:0001731 (P) formation of translatio...
    GO:0002181 (P) cytoplasmic translation
    GO:0002188 (P) translation reinitiation
    GO:0006414 (P) translational elongation
    GO:0005840 (C) ribosome
    GO:0022627 (C) cytosolic small ribosom...    		 URS00005F2C2D RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly2
    rna:1:3~3396 628~629,971~973,1644~1646,1655
    ~1657,1667,1746~1747,1757~1759
    ,1780
    4315 5dat:3
    (3.15Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly2
    rna:1:3~3396 79~82,86,90,100,102~104
    4316 5dat:4
    (3.15Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly2
    rna:1:3~3396 1~22,24~33,35~37,40,53~54,104,
    109~110,113~115,125~126,129,13
    6~157
    4317 5dat:5
    (3.15Å)
    		 3169 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:6:1~1800 846~848,1935~1936,2124~2125,22
    05,2255,2257~2259,2262~2263,22
    90~2292,2302~2304
    rna:7:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1203
    rna:8:1~158 3~23,59,143,330~337,339~342,34
    4~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1399,141
    8~1419,1441,1530,1558,1571,158
    5,1618~1619,1830~1832,2386~238
    7,2585,2994~2995
    4318 5dat:6
    (3.15Å)
    		 1795 GO:0003735 (F) structural constituent ...
    GO:0061770 (F) translation elongation ...
    GO:0001731 (P) formation of translatio...
    GO:0002181 (P) cytoplasmic translation
    GO:0002188 (P) translation reinitiation
    GO:0006414 (P) translational elongation
    GO:0005840 (C) ribosome
    GO:0022627 (C) cytosolic small ribosom...    		 URS00005F2C2D RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:5:3~3396 628~629,913,971~973,1644~1646,
    1655~1657,1667~1668,1746~1747,
    1757~1759,1780
    4319 5dat:7
    (3.15Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:5:3~3396 79~82,86,90,100,102~104
    4320 5dat:8
    (3.15Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:5:3~3396 1~22,24~33,35~37,40,53~54,104,
    106,109~110,113~115,125~127,12
    9,136~152,154~157
    4321 5dc3:1
    (3.25Å)
    		 3149 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 27196944 Assembly1
    rna:2:1~1798 846~848,1935~1936,2255~2256,22
    58~2260,2262~2263,2290~2292,23
    02~2303
    rna:3:1~121 996~998,1052,1054~1056,1156,11
    71,1197,1203
    rna:4:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1398~139
    9,1418~1420,1441,1530,1584~158
    5,1618,1830~1832,2386,2585,299
    4~2995
    4322 5dc3:2
    (3.25Å)
    		 1781 GO:0003735 (F) structural constituent ...
    GO:0061770 (F) translation elongation ...
    GO:0001731 (P) formation of translatio...
    GO:0002181 (P) cytoplasmic translation
    GO:0002188 (P) translation reinitiation
    GO:0006414 (P) translational elongation
    GO:0005840 (C) ribosome
    GO:0022627 (C) cytosolic small ribosom...    		 URS00005F2C2D RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 27196944 Assembly1
    rna:1:3~3396 628,971~973,1644~1646,1655~165
    6,1667,1746~1747,1757~1759,178
    0
    4323 5dc3:3
    (3.25Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 27196944 Assembly1
    rna:1:3~3396 79~82,86,90,100,102~103
    4324 5dc3:4
    (3.25Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 27196944
    441    		 Assembly1
    rna:1:3~3396 1~13,15~22,24~37,40,53~54,104,
    109,113~115,126,129,136~152,15
    4~157
    4325 5dc3:5
    (3.25Å)
    		 3169 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 27196944 Assembly2
    rna:6:1~1800 846~848,1935~1936,2124~2125,22
    05,2255~2260,2262~2263,2290~22
    92,2302~2304
    rna:7:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1203
    rna:8:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1399,141
    8~1419,1441,1530,1571,1585,161
    8~1619,1830~1832,2386,2585,299
    4~2995
    4326 5dc3:6
    (3.25Å)
    		 1795 GO:0003735 (F) structural constituent ...
    GO:0061770 (F) translation elongation ...
    GO:0001731 (P) formation of translatio...
    GO:0002181 (P) cytoplasmic translation
    GO:0002188 (P) translation reinitiation
    GO:0006414 (P) translational elongation
    GO:0005840 (C) ribosome
    GO:0022627 (C) cytosolic small ribosom...    		 URS00005F2C2D RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 27196944 Assembly2
    rna:5:3~3396 628,913,971~973,1644~1646,1655
    ~1657,1667,1746~1747,1757~1759
    ,1780
    4327 5dc3:7
    (3.25Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 27196944 Assembly2
    rna:5:3~3396 79~82,86,90,100,102~104
    4328 5dc3:8
    (3.25Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 27196944
    441    		 Assembly2
    rna:5:3~3396 1~22,24~33,35~37,40~41,53~54,1
    04,109~110,113~115,126~127,129
    ,136~152,154~157
    4329 5dfe:QA
    (3.09998Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177 Thermus
    thermophilus
    HB8
    300852    		 27681416 Assembly1
    rna:QV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:QX:14~23 530,693,926,1196,1397,1400~140
    2,1492~1493,1498,1505~1506
    rna:RA:6~2897 702,783~784,899,1407~1409,1418
    ,1429,1442B,1473~1475,1483~148
    4,1494~1496,1517
    4330 5dfe:QV
    (3.09998Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 27681416 Assembly1
    rna:QX:14~23 34~37
    rna:QA:4~1533 30~32,34,38~41
    rna:RA:6~2897 2~3,11~13,24~25,74~76
    4331 5dfe:QX
    (3.09998Å)
    		 10 N/A N/A N/A synthetic
    construct
    32630    		 27681416 Assembly1
    rna:QV:1~76 16~18
    rna:QA:4~1533 14~23
    4332 5dfe:RA
    (3.09998Å)
    		 2867 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 27681416 Assembly1
    rna:QV:1~76 1907~1909,1922~1924,2251~2252,
    2255,2439,2450~2451,2601~2602
    rna:QA:4~1533 1689,1700~1704,1832,1836~1837,
    1846,1848,1895,1912~1913,1915,
    1919~1920,1947~1948,1959~1961,
    2863~2864
    rna:RB:1~120 861~864,915~919,958
    4333 5dfe:RB
    (3.09998Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 27681416 Assembly1
    rna:RA:6~2897 78~81,90,97~102
    4334 5dfe:XA
    (3.09998Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177 Thermus
    thermophilus
    HB8
    300852    		 27681416 Assembly2
    rna:XV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:XX:14~23 530,693,788,926,1196,1397,1400
    ,1492~1493,1498,1505
    rna:YA:6~2897 702,783~784,899,1407~1409,1418
    ,1420,1429,1442B,1474~1475,148
    3~1484,1493~1496,1517
    4335 5dfe:XV
    (3.09998Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 27681416 Assembly2
    rna:XX:14~23 34~37
    rna:YA:6~2897 2~3,11~13,24~25,74~76
    rna:XA:4~1533 30~32,34,38,40~41
    4336 5dfe:XX
    (3.09998Å)
    		 10 N/A N/A N/A synthetic
    construct
    32630    		 27681416 Assembly2
    rna:XV:1~76 16~18
    rna:XA:4~1533 14~23
    4337 5dfe:YA
    (3.09998Å)
    		 2867 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 27681416 Assembly2
    rna:XV:1~76 1907~1909,1922~1924,2064,2251~
    2252,2255,2450~2451,2601~2602
    rna:YB:1~120 861~863,915,917~919,958
    rna:XA:4~1533 1700~1701,1703~1704,1832,1836~
    1837,1846,1848,1912~1913,1915~
    1916,1919~1920,1947~1948,1950,
    1959~1961,2863~2864
    4338 5dfe:YB
    (3.09998Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 27681416 Assembly2
    rna:YA:6~2897 78~81,90,97~98,100~101
    4339 5dge:1
    (3.45Å)
    		 3149 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:2:1~1798 846~848,1935~1936,2125~2126,22
    55~2256,2258~2259,2262~2263,22
    90~2292,2302~2304
    rna:3:1~121 996~999,1052,1054~1056,1171,11
    97,1203
    rna:4:1~158 3~23,59,143,330~337,339~342,34
    4~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1398~139
    9,1418~1420,1441,1530,1584~158
    5,1618~1619,1830~1832,2386~238
    7,2585,2994~2995
    rna:B:74~76 2405~2406,2619~2621,2819~2820,
    2971
    4340 5dge:2
    (3.45Å)
    		 1781 GO:0003735 (F) structural constituent ...
    GO:0061770 (F) translation elongation ...
    GO:0001731 (P) formation of translatio...
    GO:0002181 (P) cytoplasmic translation
    GO:0002188 (P) translation reinitiation
    GO:0006414 (P) translational elongation
    GO:0005840 (C) ribosome
    GO:0022627 (C) cytosolic small ribosom...    		 URS00005F2C2D RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:1:3~3396 628~629,913,971~973,1644~1646,
    1655~1657,1667~1668,1746~1747,
    1757~1759,1780
    4341 5dge:3
    (3.45Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:1:3~3396 79~82,86,90,100,102~104
    4342 5dge:4
    (3.45Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:1:3~3396 1~22,24~33,35~37,40,53~54,104,
    109~110,113~115,126,129,136~15
    7
    4343 5dge:5
    (3.45Å)
    		 3150 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:6:1~1800 846~848,1935~1936,2124~2125,22
    05,2255~2256,2258~2259,2262~22
    63,2290~2292,2302~2304
    rna:7:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1202~1203
    rna:8:1~158 3~23,59,330~337,339~342,344~34
    6,349,351,368~369,404~419,656~
    657,691,1394~1395,1399,1418~14
    20,1441,1530,1558,1571,1585,16
    18~1620,1830~1832,2386~2387,25
    85,2994~2995
    rna:C:74~76 2405~2406,2619~2620,2819~2820,
    2970~2971
    4344 5dge:6
    (3.45Å)
    		 1795 GO:0003735 (F) structural constituent ...
    GO:0061770 (F) translation elongation ...
    GO:0001731 (P) formation of translatio...
    GO:0002181 (P) cytoplasmic translation
    GO:0002188 (P) translation reinitiation
    GO:0006414 (P) translational elongation
    GO:0005840 (C) ribosome
    GO:0022627 (C) cytosolic small ribosom...    		 URS00005F2C2D RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:5:3~3396 628~629,913,971~973,1644~1646,
    1655~1657,1667,1746~1747,1757~
    1759,1780
    4345 5dge:7
    (3.45Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:5:3~3396 79~82,86,90,100,102~104
    4346 5dge:8
    (3.45Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:5:3~3396 1~22,24~33,35~37,40,53~54,104,
    106,109~110,113~115,125~127,12
    9,136~152,154~157
    4347 5dgf:1
    (3.3Å)
    		 3149 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:2:1~1798 846~848,1935~1936,2255~2256,22
    58~2259,2262~2263,2290~2292,23
    02~2303
    rna:3:1~121 996~998,1052,1054~1056,1156,11
    71,1197,1203
    rna:4:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1398~139
    9,1418~1420,1441,1530,1584~158
    5,1618~1619,1830~1832,2386~238
    7,2585,2994~2995
    rna:C:74~76 2405~2406,2619~2621,2819~2820
    4348 5dgf:2
    (3.3Å)
    		 1781 GO:0003735 (F) structural constituent ...
    GO:0061770 (F) translation elongation ...
    GO:0001731 (P) formation of translatio...
    GO:0002181 (P) cytoplasmic translation
    GO:0002188 (P) translation reinitiation
    GO:0006414 (P) translational elongation
    GO:0005840 (C) ribosome
    GO:0022627 (C) cytosolic small ribosom...    		 URS00005F2C2D RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:1:3~3396 628~629,971~973,1644~1646,1655
    ~1656,1667,1746~1747,1757~1759
    ,1780
    4349 5dgf:3
    (3.3Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:1:3~3396 79~82,86,90,100,102~103
    4350 5dgf:4
    (3.3Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:1:3~3396 1~22,24~33,35~37,40,53~54,104,
    106,109~110,113~115,126,129,13
    6~152,154~157
    4351 5dgf:5
    (3.3Å)
    		 3169 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly2
    rna:6:1~1800 846~848,1935~1936,2124~2125,22
    05,2255~2256,2258~2260,2262~22
    63,2290~2292,2302~2304
    rna:7:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1203
    rna:8:1~158 3~23,59,143,236,330~337,339~34
    2,345~346,349,351,368~369,404~
    419,656~657,691,1394~1395,1398
    ~1399,1418~1419,1441,1530,1558
    ,1571,1585,1618~1619,1830~1832
    ,2386~2387,2585,2994~2995
    rna:B:74~76 2405~2406,2619~2620,2819~2820,
    2970~2971
    4352 5dgf:6
    (3.3Å)
    		 1795 GO:0003735 (F) structural constituent ...
    GO:0061770 (F) translation elongation ...
    GO:0001731 (P) formation of translatio...
    GO:0002181 (P) cytoplasmic translation
    GO:0002188 (P) translation reinitiation
    GO:0006414 (P) translational elongation
    GO:0005840 (C) ribosome
    GO:0022627 (C) cytosolic small ribosom...    		 URS00005F2C2D RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly2
    rna:5:3~3396 628,913,971~973,1644~1646,1655
    ~1657,1667,1746~1747,1757~1759
    ,1780
    4353 5dgf:7
    (3.3Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly2
    rna:5:3~3396 79~82,86,90,100,102~104
    4354 5dgf:8
    (3.3Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly2
    rna:5:3~3396 1~13,15~22,24~37,40,53~54,95,1
    04,106,110,113~115,125~127,129
    ,136~152,154~157
    4355 5dgv:1
    (3.1Å)
    		 3148 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly2
    rna:2:1~1798 846~848,1935~1936,2255,2258~22
    60,2262~2263,2290~2292,2302~23
    04
    rna:3:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1203
    rna:4:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1398~139
    9,1418~1420,1441,1530,1584~158
    5,1618,1830~1832,2386~2387,258
    5,2994~2995
    rna:C:74~78 2405~2406,2619~2621,2819~2820,
    2875,2954,2971
    4356 5dgv:2
    (3.1Å)
    		 1781 GO:0003735 (F) structural constituent ...
    GO:0061770 (F) translation elongation ...
    GO:0001731 (P) formation of translatio...
    GO:0002181 (P) cytoplasmic translation
    GO:0002188 (P) translation reinitiation
    GO:0006414 (P) translational elongation
    GO:0005840 (C) ribosome
    GO:0022627 (C) cytosolic small ribosom...    		 URS00005F2C2D RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly2
    rna:1:3~3396 628,971~973,1644~1646,1655~165
    6,1667,1746~1747,1757~1759,178
    0
    4357 5dgv:3
    (3.1Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly2
    rna:1:3~3396 79~82,86,90,100,102~104
    4358 5dgv:4
    (3.1Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly2
    rna:1:3~3396 1~13,15~22,24~33,35~37,40,53~5
    4,104,109~110,113~115,129,136~
    152,154~157
    4359 5dgv:5
    (3.1Å)
    		 3149 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:6:1~1800 846~848,1935~1936,2124~2125,22
    05,2255~2260,2262~2263,2290~22
    92,2302~2304
    rna:7:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1203
    rna:8:1~158 3~23,59,143~144,330~337,339~34
    2,345~346,349,351,368~369,404~
    419,656~657,691,1394~1395,1398
    ~1399,1418~1420,1441,1530,1571
    ,1585,1618~1619,1830~1832,2386
    ,2585,2994~2995
    rna:D:74~78 2405~2406,2619~2620,2819~2820,
    2875,2954,2971
    4360 5dgv:6
    (3.1Å)
    		 1795 GO:0003735 (F) structural constituent ...
    GO:0061770 (F) translation elongation ...
    GO:0001731 (P) formation of translatio...
    GO:0002181 (P) cytoplasmic translation
    GO:0002188 (P) translation reinitiation
    GO:0006414 (P) translational elongation
    GO:0005840 (C) ribosome
    GO:0022627 (C) cytosolic small ribosom...    		 URS00005F2C2D RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:5:3~3396 628,913,972~973,1644~1646,1655
    ~1657,1667~1668,1746~1747,1757
    ~1759,1780
    4361 5dgv:7
    (3.1Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:5:3~3396 79~82,86,90,100,102~104
    4362 5dgv:8
    (3.1Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:5:3~3396 1~13,15~22,24~33,35~37,40~41,5
    3~54,104,106,109~110,113~115,1
    18,126~127,129,136~152,154~157
    4363 5dh6:A
    (2.784Å)
    		 48 GO:0004540 (F) RNA nuclease activity URS000086852D RF00008 synthetic
    construct
    32630    		 26398724 Assembly1
    rna:B:1~20 7~9,11~15,18~19,21,39,42~48
    4364 5dh6:B
    (2.784Å)
    		 20 N/A URS000086855A N/A synthetic
    construct
    32630    		 26398724 Assembly1
    rna:A:1~48 1~13
    4365 5dh7:A
    (3.064Å)
    		 48 GO:0004540 (F) RNA nuclease activity URS000086852D RF00008 synthetic
    construct
    32630    		 26398724 Assembly1
    rna:B:1~20 7~9,11~15,18~19,21,39,42~48
    4366 5dh7:B
    (3.064Å)
    		 20 N/A URS000086855A N/A synthetic
    construct
    32630    		 26398724 Assembly1
    rna:A:1~48 1~13
    4367 5dh8:A
    (3.297Å)
    		 48 GO:0004540 (F) RNA nuclease activity URS000086852D RF00008 synthetic
    construct
    32630    		 26398724 Assembly1
    rna:B:1~20 7~9,11~15,18~19,21,39,42~47
    4368 5dh8:B
    (3.297Å)
    		 20 N/A URS000086855A N/A synthetic
    construct
    32630    		 26398724 Assembly1
    rna:A:1~48 1~13
    4369 5dhc:A
    (1.55Å)
    		 14 N/A URS0002681414 N/A synthetic
    construct
    32630    		 28058281 Assembly1
    rna:B:1~14 3~14
    4370 5dhc:B
    (1.55Å)
    		 14 N/A URS0002681414 N/A synthetic
    construct
    32630    		 28058281 Assembly1
    rna:A:1~14 3~14
    4371 5dhc:C
    (1.55Å)
    		 14 N/A URS0002681414 N/A synthetic
    construct
    32630    		 28058281 Assembly2
    rna:D:1~14 3~14
    4372 5dhc:D
    (1.55Å)
    		 14 N/A URS0002681414 N/A synthetic
    construct
    32630    		 28058281 Assembly2
    rna:C:1~14 3~14
    4373 5di2:A
    (2.989Å)
    		 48 GO:0004540 (F) RNA nuclease activity URS0000868531 RF00008 synthetic
    construct
    32630    		 26398724 Assembly1
    rna:B:1~20 7~9,11~15,18~19,21,39,42~48
    4374 5di2:B
    (2.989Å)
    		 20 N/A URS000086855A N/A synthetic
    construct
    32630    		 26398724 Assembly1
    rna:A:1~48 1~13
    4375 5di4:A
    (2.948Å)
    		 48 GO:0004540 (F) RNA nuclease activity URS0000868531 RF00008 synthetic
    construct
    32630    		 26398724 Assembly1
    rna:B:1~20 7~9,11~15,18~19,21,39,42~48
    4376 5di4:B
    (2.948Å)
    		 20 N/A URS000086855A N/A synthetic
    construct
    32630    		 26398724 Assembly1
    rna:A:1~48 1~13
    4377 5dm6:X
    (2.9Å)
    		 2780 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00008FED45 RF02541 Deinococcus
    radiodurans
    1299    		 26464437 Assembly1
    rna:Y:2~123 861~864,915,917~918,920,958
    4378 5dm6:Y
    (2.9Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E31C RF00001 Deinococcus
    radiodurans
    1299    		 26464437 Assembly1
    rna:X:1~2902 80~83,92~93,100~104
    4379 5dm7:X
    (3.0Å)
    		 2780 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00008FED45 RF02541 Deinococcus
    radiodurans
    1299    		 26464437 Assembly1
    rna:Y:2~123 874~877,926~931,969
    4380 5dm7:Y
    (3.0Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E31C RF00001 Deinococcus
    radiodurans
    1299    		 26464437 Assembly1
    rna:X:1~2877 80~82,92~93,99~104
    4381 5do5:A
    (1.2Å)
    		 12 N/A URS000080E0B7 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A-2:101~112 101~112
    4382 5dox:1A
    (3.1Å)
    		 2872 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 26028538 Assembly1
    rna:1B:1~120 861~864,915,917~919,958
    rna:1a:4~1533 1689,1700~1704,1832,1836~1837,
    1846,1848,1895,1912~1916,1919~
    1920,1947~1948,1959~1961,2863~
    2864
    4383 5dox:1B
    (3.1Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 26028538 Assembly1
    rna:1A:6~2897 78~81,90,97~98,100~102
    4384 5dox:1a
    (3.1Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177 Thermus
    thermophilus
    HB8
    300852    		 26028538 Assembly1
    rna:1A:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1473~1475,1483
    ~1484,1492~1496,1517
    4385 5dox:2A
    (3.1Å)
    		 2867 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 26028538 Assembly2
    rna:2B:1~120 861~864,915~919,958
    rna:2a:4~1533 1700~1701,1703~1704,1832,1836~
    1837,1846,1848,1895,1912~1914,
    1916,1919~1920,1947~1949,1959~
    1961,2863~2864
    4386 5dox:2B
    (3.1Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 26028538 Assembly2
    rna:2A:6~2897 78~81,90,97~98,100~102
    4387 5dox:2a
    (3.1Å)
    		 1504 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177 Thermus
    thermophilus
    HB8
    300852    		 26028538 Assembly2
    rna:2A:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1474~1475,1483
    ~1485,1492~1496,1517
    4388 5doy:1A
    (2.6Å)
    		 2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 26028538 Assembly1
    rna:1B:1~120 861~864,915,917~919,958
    rna:1a:4~1533 1689,1701~1704,1832,1836~1837,
    1846,1848,1912~1916,1919~1920,
    1947~1949,1959~1961,2863~2864
    rna:1w:1~76 882,896~897,1913,2483,2493~249
    4,2602
    rna:1x:2~76 1907~1909,1922~1924,2063~2064,
    2251~2253,2255,2439,2450~2451,
    2601~2602
    rna:1y:1~76 1851,2112,2169,2394~2395,2421~
    2422
    4389 5doy:1B
    (2.6Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 26028538 Assembly1
    rna:1A:6~2897 78~81,90,97~98,100~102
    4390 5doy:1a
    (2.6Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177 Thermus
    thermophilus
    HB8
    300852    		 26028538 Assembly1
    rna:1A:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1473~1475,1483
    ~1484,1494~1496,1517
    rna:1v:12~25 530,926,1196,1397,1400~1402,14
    92~1493,1498,1503,1505,1507
    rna:1w:1~76 530,1054,1493
    rna:1x:2~76 790,966,1229~1230,1338~1340,14
    00
    4391 5doy:1v
    (2.6Å)
    		 14 N/A N/A N/A Tequatrovirus
    T4
    10665    		 26028538 Assembly1
    rna:1a:4~1533 12~13,15~24
    rna:1w:1~76 19~21
    rna:1x:2~76 16~18
    4392 5doy:1w
    (2.6Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 26028538 Assembly1
    rna:1A:6~2897 19,37~38,55~56,64,75~76
    rna:1a:4~1533 34~37
    rna:1v:12~25 34~37
    4393 5doy:1x
    (2.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 26028538 Assembly1
    rna:1A:6~2897 3,11~13,24~25,74~76
    rna:1a:4~1533 29~32,34,38,40~41
    rna:1v:12~25 34~37
    4394 5doy:1y
    (2.6Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 26028538 Assembly1
    rna:1A:6~2897 19,56,71~72,76
    4395 5doy:2A
    (2.6Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 26028538 Assembly2
    rna:2B:1~120 861~864,915,917~919,958
    rna:2a:4~1532 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1949,1959~1961,
    2863~2864
    rna:2w:2~76 882,896~897,1913,2482,2554,260
    2
    rna:2x:2~76 1907~1909,1922~1924,2063,2251~
    2253,2255,2439,2450~2451,2601~
    2602
    rna:2y:1~76 1851~1852,2112,2169,2394~2395,
    2421~2422,2432
    4396 5doy:2B
    (2.6Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 26028538 Assembly2
    rna:2A:6~2897 78~81,90,97~98,100~102
    4397 5doy:2a
    (2.6Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177 Thermus
    thermophilus
    HB8
    300852    		 26028538 Assembly2
    rna:2A:6~2897 702,784,899~900,1407~1409,1418
    ,1429~1430,1442A,1473~1475,148
    3~1485,1493~1496,1517
    rna:2v:12~24 926,1196,1397,1400~1403,1492~1
    493,1498,1503~1505,1507
    rna:2w:2~76 530,1054,1493
    rna:2x:2~76 790,966,1229~1230,1338~1340,14
    00
    4398 5doy:2v
    (2.6Å)
    		 13 N/A N/A N/A Tequatrovirus
    T4
    10665    		 26028538 Assembly2
    rna:2a:4~1532 13,15~20,22~24
    rna:2w:2~76 19~21
    rna:2x:2~76 16~18
    4399 5doy:2w
    (2.6Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 26028538 Assembly2
    rna:2A:6~2897 19,37~38,55~56,64,75~76
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    4400 5doy:2x
    (2.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 26028538 Assembly2
    rna:2A:6~2897 2~3,11~13,24~25,74~76
    rna:2a:4~1532 29~32,34,38~41
    rna:2v:12~24 34~37
    rna:2y:1~76 39~40
    << < 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.