| # | PDB (Resolution) |
Length | EC number & GO term |
RNAcentral | Rfam | Taxon | PubMed | ATtRACT motif |
Ligand & binding nucleotides |
|---|---|---|---|---|---|---|---|---|---|
| 5001 |
5ktj:B (2.97Å) |
15 | N/A | URS0000A7635F | N/A | metagenome 256318 |
28096403 | Assembly1 rna:A:1~50 2~15 |
|
| 5002 |
5ktj:C (2.97Å) |
50 | GO:0003824 (F) catalytic activity | URS0000A7633D | RF02679 | metagenome 256318 |
28096403 | Assembly2 rna:D:1~15 25~30,32,40,43~50 |
|
| 5003 |
5ktj:D (2.97Å) |
15 | N/A | URS0000A7635F | N/A | metagenome 256318 |
28096403 | Assembly2 rna:C:1~50 2~15 |
|
| 5004 |
5kvj:A (2.261Å) |
16 | N/A | URS0000A7639D | N/A | synthetic construct 32630 |
N/A | Assembly1 rna:B:1~16 1~16 |
|
| 5005 |
5kvj:B (2.261Å) |
16 | N/A | URS0000A76395 | N/A | synthetic construct 32630 |
N/A | Assembly1 rna:A:1~16 1~16 |
|
| 5006 |
5kx9:X (2.9Å) |
53 | GO:0010181 (F) FMN binding | URS000080DF4D | RF00050 | Fusobacterium nucleatum 851 |
27485612 26416753 |
Assembly1 rna:Y:57~112 1~10,12~13,19,21~25,29~35,37~4 3,46~52 |
|
| 5007 |
5kx9:Y (2.9Å) |
56 | GO:0010181 (F) FMN binding | URS000080E20B | RF00050 | Fusobacterium nucleatum 851 |
27485612 26416753 |
Assembly1 rna:X:1~53 57~60,63~64,70,72~76,81~85,89~ 95,101~112 |
|
| 5008 |
5l00:A (1.25Å) |
15 | N/A | N/A | N/A | synthetic construct 32630 |
28058281 | Assembly1 rna:B:1~15 2~15 |
|
| 5009 |
5l00:B (1.25Å) |
15 | N/A | N/A | N/A | synthetic construct 32630 |
28058281 | Assembly1 rna:A:1~15 2~15 |
|
| 5010 |
5l00:C (1.25Å) |
15 | N/A | N/A | N/A | synthetic construct 32630 |
28058281 | Assembly2 rna:D:1~15 2~15 |
|
| 5011 |
5l00:D (1.25Å) |
15 | N/A | N/A | N/A | synthetic construct 32630 |
28058281 | Assembly2 rna:C:1~15 2~15 |
|
| 5012 |
5l3p:A (3.7Å) |
2890 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS0000A76322 | RF02541 | Escherichia coli K-12 83333 |
27226493 | Assembly1 rna:B:1~120 861~863,915,917~919,958~959 rna:a:2~1540 1686,1689,1701~1704,1832,1836, 1848,1895,1912~1913,1915~1916, 1919~1920,1947~1949,1959~1961 rna:x:1~76 1907~1909,1922~1924,2251~2253, 2451,2506,2602 rna:y:1~73 1067,1913 |
|
| 5013 |
5l3p:B (3.7Å) |
120 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS00008116C5 | RF00001 | Escherichia coli K-12 83333 |
27226493 | Assembly1 rna:A:1~2903 78~81,89~90,96~97,99~100 |
|
| 5014 |
5l3p:a (3.7Å) |
1539 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS000080DDC0 | RF00177 | Escherichia coli K-12 83333 |
27226493 | Assembly1 rna:A:1~2903 702,783~784,899,1408~1409,1418 ,1428~1429,1473~1475,1483~1484 ,1494~1495,1517 rna:v:13~18 693,1400~1402,1498,1505 rna:x:1~76 790,966,1229~1230,1338~1341 rna:y:1~73 518~519,530,1492~1493 |
|
| 5015 |
5l3p:x (3.7Å) |
77 | GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation |
URS00001BBAFC | RF00005 | Escherichia coli K-12 83333 |
27226493 | Assembly1 rna:A:1~2903 12~13,24,74~76 rna:a:2~1540 30~32,34,38,40~41 rna:v:13~18 34~37 |
|
| 5016 |
5l3p:y (3.7Å) |
73 | GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation |
URS0000A76379 | RF00005 | Escherichia coli K-12 83333 |
27226493 | Assembly1 rna:A:1~2903 38,56 rna:a:2~1540 34~37 |
|
| 5017 |
5li0:A (3.8Å) |
2914 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS0000B21DE4 | RF02541 | Staphylococcus aureus subsp. aureus NCTC 8325 93061 |
27906650 | Assembly1 rna:a:7~1553 1875,1939,1942,1946~1947,1974~ 1976,1986~1987 rna:B:1~114 907~908,962~963,994~995,1002 |
|
| 5018 |
5li0:B (3.8Å) |
114 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS00003DF33D | RF00001 | Staphylococcus aureus subsp. aureus NCTC 8325 93061 |
27906650 | Assembly1 rna:A:3~2920 76~79,85,87,94,96~97 |
|
| 5019 |
5li0:a (3.8Å) |
1547 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS0000B21DF7 | RF00177 | Staphylococcus aureus subsp. aureus NCTC 8325 93061 |
27906650 | Assembly1 rna:A:3~2920 710,1418~1420,1429,1495~1496,1 506~1507,1529 |
|
| 5020 |
5lj3:E (3.8Å) |
16 | N/A | URS0000B21E0A | N/A | Saccharomyces cerevisiae 4932 |
27459055 | Assembly1 rna:U:4~173 -5~-1 |
|
| 5021 |
5lj3:I (3.8Å) |
33 | N/A | N/A | N/A | Saccharomyces cerevisiae 4932 |
27459055 | ![]() 132 ![]() 387 ![]() 168 ![]() 403 |
Assembly1 rna:Z:3~1169 2,54~56,58~60,66~69,71~73 rna:V:1~102 3~8,70~71 |
| 5022 |
5lj3:U (3.8Å) |
141 | GO:0000244 (P) spliceosomal tri-snRNP ... GO:0000353 (P) formation of quadruple ... GO:0005682 (C) U5 snRNP GO:0046540 (C) U4/U6 x U5 tri-snRNP co... |
URS0000514318 | RF00020 | Saccharomyces cerevisiae 4932 |
27459055 | Assembly1 rna:E:-16~-1 97~100 rna:V:1~102 98~100 |
|
| 5023 |
5lj3:V (3.8Å) |
97 | GO:0030621 (F) U4 snRNA binding GO:0000244 (P) spliceosomal tri-snRNP ... GO:0000353 (P) formation of quadruple ... GO:0005688 (C) U6 snRNP GO:0046540 (C) U4/U6 x U5 tri-snRNP co... |
URS00006184A9 | RF00026 | Saccharomyces cerevisiae 4932 |
27459055 | ![]() 383 |
Assembly1 rna:U:4~173 72~73,75~76 rna:I:1~76 45~51,58~59,79 rna:Z:3~1169 53,55~62,88,92~102 |
| 5024 |
5lj3:Z (3.8Å) |
171 | GO:0045131 (F) pre-mRNA branch point b... GO:0000348 (P) mRNA branch site recogn... GO:0005686 (C) U2 snRNP |
URS000023C730 | RF00004 | Saccharomyces cerevisiae 4932 |
27459055 | ![]() 9 |
Assembly1 rna:I:1~76 31,33~39,42~43,45~47 rna:V:1~102 3~14,16,21~23,26~29 |
| 5025 |
5lj5:E (10.0Å) |
16 | N/A | URS0000B21E0A | N/A | Saccharomyces cerevisiae 4932 |
27459055 | Assembly1 rna:U:4~173 -5~-1 |
|
| 5026 |
5lj5:I (10.0Å) |
33 | N/A | N/A | N/A | Saccharomyces cerevisiae 4932 |
27459055 | ![]() 132 ![]() 387 ![]() 168 ![]() 403 |
Assembly1 rna:Z:3~1169 2,54~56,58~60,66~69,71~73 rna:V:1~102 3~8,70~71 |
| 5027 |
5lj5:U (10.0Å) |
141 | GO:0000244 (P) spliceosomal tri-snRNP ... GO:0000353 (P) formation of quadruple ... GO:0005682 (C) U5 snRNP GO:0046540 (C) U4/U6 x U5 tri-snRNP co... |
URS0000514318 | RF00020 | Saccharomyces cerevisiae 4932 |
27459055 | Assembly1 rna:E:-16~-1 97~100 rna:V:1~102 98~100 |
|
| 5028 |
5lj5:V (10.0Å) |
97 | GO:0030621 (F) U4 snRNA binding GO:0000244 (P) spliceosomal tri-snRNP ... GO:0000353 (P) formation of quadruple ... GO:0005688 (C) U6 snRNP GO:0046540 (C) U4/U6 x U5 tri-snRNP co... |
URS00006184A9 | RF00026 | Saccharomyces cerevisiae 4932 |
27459055 | ![]() 383 |
Assembly1 rna:U:4~173 72~73,75~76 rna:I:1~76 45~51,58~59,79 rna:Z:3~1169 53,55~62,88,92~102 |
| 5029 |
5lj5:Z (10.0Å) |
171 | GO:0045131 (F) pre-mRNA branch point b... GO:0000348 (P) mRNA branch site recogn... GO:0005686 (C) U2 snRNP |
URS000023C730 | RF00004 | Saccharomyces cerevisiae 4932 |
27459055 | ![]() 9 |
Assembly1 rna:I:1~76 31,33~39,42~43,45~47 rna:V:1~102 3~13,16,21~23,26~29 |
| 5030 |
5lks:L5 (3.6Å) |
3776 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS000086853A | RF02543 | Homo sapiens 9606 |
27665925 25901680 |
![]() M054_0.6 ![]() 1306 ![]() 769 ![]() 706 ![]() 1303 ![]() 762 ![]() 763 ![]() 1148 ![]() 1149 ![]() 764 ![]() 870 ![]() 167 ![]() 21 ![]() 1079 ![]() 1029 ![]() 1075 ![]() 1072 ![]() 1073 ![]() M104_0.6 ![]() 1071 ![]() 819 ![]() 1373 ![]() 938 ![]() 546 ![]() s52 ![]() s51 ![]() s50 ![]() 931 ![]() 930 ![]() 936 ![]() s59 ![]() 995 ![]() 994 ![]() 595 ![]() 1314 ![]() 991 ![]() 1312 ![]() 1311 ![]() 1028 ![]() 1150 ![]() 673 ![]() 123 ![]() 124 ![]() 125 ![]() M290_0.6 ![]() 1068 ![]() 1017 ![]() 1060 ![]() s100 ![]() s102 ![]() 52 ![]() 533 ![]() M227_0.6 ![]() 1384 ![]() 375 ![]() s49 ![]() 926 ![]() 822 ![]() 1128 ![]() 988 ![]() 1321 ![]() 708 ![]() 704 ![]() 705 ![]() 1328 ![]() 707 ![]() 1124 ![]() 987 ![]() 1126 ![]() 703 ![]() M077_0.6 ![]() s18 ![]() 83 ![]() 1181 ![]() 797 ![]() 796 ![]() 795 ![]() 836 ![]() 837 ![]() 791 ![]() 790 ![]() 838 ![]() 1334 ![]() s70 ![]() 1016 ![]() s72 ![]() 1393 ![]() 610 ![]() 1012 ![]() 1013 ![]() 1236 ![]() 1237 ![]() 1231 ![]() 1232 ![]() 1233 ![]() 1335 ![]() s17 ![]() M109_0.6 ![]() 1336 ![]() 1331 ![]() 1239 ![]() 1333 ![]() 589 ![]() M273_0.6 ![]() s99 ![]() 1389 ![]() 902 ![]() 821 ![]() 900 ![]() 901 ![]() 906 ![]() 905 ![]() 33 ![]() s48 ![]() 853 ![]() M102_0.6 ![]() 924 ![]() M044_0.6 ![]() 1245 ![]() s62 ![]() s96 ![]() 1227 ![]() 883 ![]() M035_0.6 ![]() 1223 ![]() M156_0.6 ![]() 604 ![]() M320_0.6 ![]() 1347 ![]() 60 ![]() s81 ![]() M349_0.6 ![]() 1083 ![]() 175 ![]() 1026 ![]() 100 ![]() 42 ![]() s61 ![]() 977 ![]() 976 ![]() 974 ![]() 852 ![]() 970 ![]() M154_0.6 ![]() 884 ![]() s55 ![]() 979 ![]() M153_0.6 ![]() 183 ![]() 1238 ![]() 185 ![]() 1375 ![]() 1036 ![]() 503 ![]() 1034 ![]() 1035 ![]() 1212 ![]() 1043 ![]() 1211 ![]() 1216 ![]() 1042 ![]() 986 ![]() 467 ![]() M148_0.6 ![]() 1354 ![]() M103_0.6 ![]() 91 ![]() 1127 ![]() 162 ![]() M070_0.6 ![]() 813 ![]() M020_0.6 ![]() M050_0.6 ![]() 1187 ![]() 1182 ![]() 815 ![]() 1037 ![]() 1107 ![]() M347_0.6 ![]() 722 ![]() 935 ![]() M086_0.6 ![]() 1164 ![]() 1165 ![]() 1166 ![]() 606 ![]() 886 ![]() 156 ![]() 748 ![]() 749 ![]() 608 ![]() 727 ![]() s77 ![]() M061_0.6 ![]() 958 ![]() 1055 ![]() 878 ![]() 879 ![]() 1059 ![]() 953 ![]() 952 ![]() 872 ![]() 954 ![]() 957 ![]() M272_0.6 ![]() 1352 ![]() 774 ![]() 1215 ![]() 776 ![]() 1173 ![]() 770 ![]() 773 ![]() 1183 ![]() 1271 ![]() 1272 ![]() 1273 ![]() 779 ![]() 778 ![]() 1178 ![]() M151_0.6 ![]() 78 ![]() 1285 ![]() M083_0.6 ![]() 1041 ![]() 1040 ![]() 1045 ![]() 1044 ![]() 1288 ![]() 354 ![]() 688 ![]() 1360 ![]() 684 ![]() 800 ![]() 1368 ![]() 804 |
Assembly1 rna:L7:1~120 1736~1738,1741,1792,1794~1796, 1894,1909,1936 rna:L8:1~156 2~22,58,146,338~339,341~348,35 0~352,356~357,360,362,379~380, 415~419,421~430,1305,1333~1334 ,2308~2309,2312~2313,2333~2334 ,2355,2444~2445,2472,2493~2494 ,2544,2778~2779,3890~3891,4573 rna:S2:1~1869 1563,2884,3628~3629,3695,3711, 3759~3761,3765~3766,3794~3796, 3806 |
| 5031 |
5lks:L7 (3.6Å) |
120 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS00000F9D45 | RF00001 | Homo sapiens 9606 |
27665925 25901680 |
![]() 931 ![]() 1290 ![]() s51 ![]() 879 |
Assembly1 rna:L5:1~5069 77~80,84,97~98,101,103 |
| 5032 |
5lks:L8 (3.6Å) |
156 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS0000005270 | RF00002 | Homo sapiens 9606 |
27665925 25901680 |
![]() 1227 ![]() 592 ![]() s24 ![]() 993 ![]() 1215 ![]() 1352 ![]() s37 ![]() 1238 ![]() 1178 ![]() M085_0.6 ![]() 1389 ![]() 1360 ![]() 589 ![]() 375 ![]() M106_0.6 |
Assembly1 rna:L5:1~5069 1,3~13,15~22,24~37,40,53~54,10 3,108,112~113,124,126~127,136, 139~149,151~156 |
| 5033 |
5lks:S2 (3.6Å) |
1742 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS0000868520 | RF01960 | Homo sapiens 9606 |
27665925 25901680 |
![]() 1303 ![]() 1263 ![]() 872 ![]() 1149 ![]() 1267 ![]() 764 ![]() 43 ![]() 957 ![]() 692 ![]() 1079 ![]() 1075 ![]() 1072 ![]() 1073 ![]() 819 ![]() 346 ![]() 546 ![]() 1378 ![]() 930 ![]() 936 ![]() 935 ![]() M296_0.6 ![]() 1314 ![]() M141_0.6 ![]() 1068 ![]() s72 ![]() M147_0.6 ![]() 1060 ![]() s102 ![]() 1384 ![]() 1386 ![]() M016_0.6 ![]() s48 ![]() 926 ![]() 822 ![]() 1128 ![]() 1323 ![]() 988 ![]() 595 ![]() 1327 ![]() 707 ![]() 986 ![]() 796 ![]() 836 ![]() 762 ![]() 790 ![]() 838 ![]() 1124 ![]() 1017 ![]() 1393 ![]() 1392 ![]() 1390 ![]() 1236 ![]() 1335 ![]() 1334 ![]() M109_0.6 ![]() 1238 ![]() M273_0.6 ![]() s14 ![]() s96 ![]() s99 ![]() 1311 ![]() 105 ![]() 902 ![]() 821 ![]() 900 ![]() 905 ![]() 1380 ![]() 788 ![]() 445 ![]() 924 ![]() 1244 ![]() s62 ![]() s61 ![]() M074_0.6 ![]() 335 ![]() 60 ![]() 1167 ![]() 977 ![]() 976 ![]() 974 ![]() 852 ![]() 970 ![]() 1333 ![]() 509 ![]() 1037 ![]() 1035 ![]() 1213 ![]() 756 ![]() 639 ![]() M148_0.6 ![]() 786 ![]() 1355 ![]() M065_0.6 ![]() 93 ![]() 167 ![]() M070_0.6 ![]() 813 ![]() M050_0.6 ![]() 1188 ![]() 1022 ![]() 1187 ![]() 1029 ![]() 815 ![]() 727 ![]() 722 ![]() 883 ![]() 604 ![]() 606 ![]() 884 ![]() 749 ![]() 779 ![]() 608 ![]() 996 ![]() M037_0.6 ![]() 1055 ![]() 878 ![]() 1059 ![]() 952 ![]() 1195 ![]() 954 ![]() 870 ![]() 325 ![]() 758 ![]() 770 ![]() 610 ![]() 1274 ![]() 1042 ![]() M127_0.6 ![]() s24 ![]() 804 |
Assembly1 rna:L5:1~5069 677,970,1028~1029,1180,1708~17 10,1719,1721,1731,1815~1816,18 25~1828,1849~1850 |
| 5034 |
5lmn:A (3.55Å) |
1514 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS000080E226 | RF00177 | Thermus thermophilus HB8 300852 |
27662086 | Assembly1 rna:Y:20~39 790,926,1497,1534~1542 |
|
| 5035 |
5lmn:Y (3.55Å) |
20 | N/A | N/A | N/A | Thermus thermophilus HB8 300852 |
27662086 | Assembly1 rna:A:5~1542 22~32,35~36 |
|
| 5036 |
5lmo:A (4.3Å) |
1514 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS000080E226 | RF00177 | Thermus thermophilus HB8 300852 |
27662086 | Assembly1 rna:Y:20~32 1534~1542 |
|
| 5037 |
5lmo:Y (4.3Å) |
13 | N/A | N/A | N/A | Thermus thermophilus HB8 300852 |
27662086 | Assembly1 rna:A:5~1542 22~32 |
|
| 5038 |
5lmp:A (5.35Å) |
1514 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS000080E226 | RF00177 | Thermus thermophilus HB8 300852 |
27662086 | Assembly1 rna:Y:20~39 790,926,1497,1534~1542 |
|
| 5039 |
5lmp:Y (5.35Å) |
20 | N/A | N/A | N/A | Thermus thermophilus HB8 300852 |
27662086 | Assembly1 rna:A:5~1542 22~32,35~36 |
|
| 5040 |
5lmq:A (4.2Å) |
1514 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS000080E226 | RF00177 | Thermus thermophilus HB8 300852 |
27662086 | Assembly1 rna:Y:20~40 693,926,1400,1534~1542 rna:Z:1~76 966,1338~1340,1400 |
|
| 5041 |
5lmq:Y (4.2Å) |
21 | N/A | N/A | N/A | Thermus thermophilus HB8 300852 |
27662086 | Assembly1 rna:A:5~1542 22,24~33,35,38 rna:Z:1~76 36~38 |
|
| 5042 |
5lmq:Z (4.2Å) |
77 | GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation |
URS000041AF00 | RF00005 | Escherichia coli 562 |
27662086 | Assembly1 rna:A:5~1542 29~30,34,42 rna:Y:20~40 34~37 |
|
| 5043 |
5lmr:A (4.45Å) |
1515 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS000080E226 | RF00177 | Thermus thermophilus HB8 300852 |
27662086 | Assembly1 rna:Y:20~39 926,1400,1532~1542 rna:Z:1~76 966,1229~1230,1338~1341 |
|
| 5044 |
5lmr:Y (4.45Å) |
17 | N/A | N/A | N/A | Thermus thermophilus HB8 300852 |
27662086 | Assembly1 rna:A:5~1542 22,24~32,37,39 rna:Z:1~76 36~38 |
|
| 5045 |
5lmr:Z (4.45Å) |
77 | GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation |
URS000041AF00 | RF00005 | Thermus thermophilus HB8 300852 |
27662086 | Assembly1 rna:A:5~1542 29~32,34,41~42 rna:Y:20~39 34~37 |
|
| 5046 |
5lms:A (5.1Å) |
1514 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS000080E226 | RF00177 | Thermus thermophilus HB8 300852 |
27662086 | Assembly1 rna:Y:20~39 926,1400~1401,1505~1506,1534~1 542 rna:Z:1~76 966,1338~1339 |
|
| 5047 |
5lms:Y (5.1Å) |
20 | N/A | N/A | N/A | Thermus thermophilus 274 |
27662086 | Assembly1 rna:A:5~1542 22,24~31,35,38 rna:Z:1~76 36~39 |
|
| 5048 |
5lms:Z (5.1Å) |
77 | GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation |
URS000041AF00 | RF00005 | Escherichia coli 562 |
27662086 | Assembly1 rna:A:5~1542 34,41~42 rna:Y:20~39 34~37 |
|
| 5049 |
5lmt:A (4.15Å) |
1515 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS000080E226 | RF00177 | Thermus thermophilus HB8 300852 |
27662086 | Assembly1 rna:Y:20~39 926,1400~1401,1498,1505~1506,1 534~1542 rna:Z:1~76 790,966,1229~1230,1338~1341,14 00 |
|
| 5050 |
5lmt:Y (4.15Å) |
20 | N/A | N/A | N/A | Thermus thermophilus 274 |
27662086 | Assembly1 rna:A:5~1542 22~32,35~39 rna:Z:1~76 36~38 |
|
| 5051 |
5lmt:Z (4.15Å) |
77 | GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation |
URS000041AF00 | RF00005 | Thermus thermophilus HB8 300852 |
27662086 | Assembly1 rna:A:5~1542 30~32,34,38,41~42 rna:Y:20~39 34~37 |
|
| 5052 |
5lmu:A (4.0Å) |
1515 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS000080E226 | RF00177 | Thermus thermophilus HB8 300852 |
27662086 | Assembly1 rna:Y:20~39 926,1400~1401,1498,1505,1534~1 542 rna:Z:1~76 790,966,1229~1230,1338~1341,14 00 |
|
| 5053 |
5lmu:Y (4.0Å) |
20 | N/A | N/A | N/A | Thermus thermophilus HB8 300852 |
27662086 | Assembly1 rna:A:5~1542 22~32,35~38 rna:Z:1~76 36~38 |
|
| 5054 |
5lmu:Z (4.0Å) |
77 | GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation |
URS000041AF00 | RF00005 | Escherichia coli 562 |
27662086 | Assembly1 rna:A:5~1542 29~32,34,38~41 rna:Y:20~39 34~37 |
|
| 5055 |
5lmv:A (4.9Å) |
1515 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS000080E226 | RF00177 | Thermus thermophilus HB8 300852 |
27662086 | Assembly1 rna:Y:20~39 926,1400~1401,1498,1505,1534~1 542 rna:Z:1~76 790,966,1229~1230,1338~1341,14 00 |
|
| 5056 |
5lmv:Y (4.9Å) |
20 | N/A | N/A | N/A | Thermus thermophilus HB8 300852 |
27662086 | Assembly1 rna:A:5~1542 22~32,35~38 rna:Z:1~76 36~38 |
|
| 5057 |
5lmv:Z (4.9Å) |
77 | GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation |
URS000041AF00 | RF00005 | Escherichia coli 562 |
27662086 | Assembly1 rna:A:5~1542 29~32,34,38~41 rna:Y:20~39 34~37 |
|
| 5058 |
5lqo:A (1.87Å) |
10 | N/A | URS0000BC467A | N/A | Homo sapiens 9606 |
28623187 | Assembly1 rna:B:1~10 1~10 |
|
| 5059 |
5lqo:B (1.87Å) |
10 | N/A | URS0000BC467A | N/A | Homo sapiens 9606 |
28623187 | Assembly1 rna:A:1~10 1~10 |
|
| 5060 |
5lqt:A (1.5Å) |
10 | N/A | URS0000BC467A | N/A | Homo sapiens 9606 |
28623187 | Assembly1 rna:B:1~10 1~10 |
|
| 5061 |
5lqt:B (1.5Å) |
10 | N/A | URS0000BC467A | N/A | Homo sapiens 9606 |
28623187 | Assembly1 rna:A:1~10 1~10 |
|
| 5062 |
5lqw:2 (5.8Å) |
81 | GO:0045131 (F) pre-mRNA branch point b... GO:0000348 (P) mRNA branch site recogn... GO:0005686 (C) U2 snRNP |
URS000023C730 | RF00004 | Saccharomyces cerevisiae 4932 |
27562955 | Assembly1 rna:6:1~102 3~13,17,20~23,26~29 rna:9:2~518 34~39,41 |
|
| 5063 |
5lqw:5 (5.8Å) |
141 | GO:0000244 (P) spliceosomal tri-snRNP ... GO:0000353 (P) formation of quadruple ... GO:0005682 (C) U5 snRNP GO:0046540 (C) U4/U6 x U5 tri-snRNP co... |
URS0000514318 | RF00020 | Saccharomyces cerevisiae 4932 |
27562955 | Assembly1 rna:6:1~102 98~99 rna:9:2~518 97,99 |
|
| 5064 |
5lqw:6 (5.8Å) |
102 | GO:0030621 (F) U4 snRNA binding GO:0000244 (P) spliceosomal tri-snRNP ... GO:0000353 (P) formation of quadruple ... GO:0005688 (C) U6 snRNP GO:0046540 (C) U4/U6 x U5 tri-snRNP co... |
URS00006184A9 | RF00026 | Saccharomyces cerevisiae 4932 |
27562955 | ![]() 383 |
Assembly1 rna:2:3~83 55~63,86,93~102 rna:5:4~173 73,75 rna:9:2~518 46~50,77~79 |
| 5065 |
5lqw:9 (5.8Å) |
54 | N/A | N/A | N/A | Saccharomyces cerevisiae 4932 |
27562955 | ![]() 132 ![]() 387 ![]() 168 ![]() 403 |
Assembly1 rna:2:3~83 495~500,502~503 rna:5:4~173 19,21~22 rna:6:1~102 21,25~29 |
| 5066 |
5lr3:A (1.65Å) |
10 | N/A | URS0000BC46A2 | N/A | Homo sapiens 9606 |
28623187 | Assembly1 rna:B:1 1~10 |
|
| 5067 |
5lr3:B (1.65Å) |
10 | N/A | URS0000BC46A2 | N/A | Homo sapiens 9606 |
28623187 | Assembly1 rna:A:1~10 1~10 |
|
| 5068 |
5lr4:A (1.8Å) |
10 | N/A | URS0000BC46A2 | N/A | Homo sapiens 9606 |
28623187 | Assembly1 rna:B:1~10 1~10 |
|
| 5069 |
5lr4:B (1.8Å) |
10 | N/A | URS0000BC46A2 | N/A | Homo sapiens 9606 |
28623187 | Assembly1 rna:A:1~10 1~6,8~10 |
|
| 5070 |
5lr4:C (1.8Å) |
10 | N/A | URS0000BC46A2 | N/A | Homo sapiens 9606 |
28623187 | Assembly2 rna:D:1~10 1~10 |
|
| 5071 |
5lr4:D (1.8Å) |
10 | N/A | URS0000BC46A2 | N/A | Homo sapiens 9606 |
28623187 | Assembly2 rna:C:1~10 1~10 |
|
| 5072 |
5lr5:A (2.4Å) |
10 | N/A | URS000086850F | N/A | Homo sapiens 9606 |
28623187 | Assembly1 rna:B:1~10 1~10 |
|
| 5073 |
5lr5:B (2.4Å) |
10 | N/A | URS000086850F | N/A | Homo sapiens 9606 |
28623187 | Assembly1 rna:A:1~10 1~10 |
|
| 5074 |
5lr5:C (2.4Å) |
10 | N/A | URS000086850F | N/A | Homo sapiens 9606 |
28623187 | Assembly2 rna:D:1~10 1~10 |
|
| 5075 |
5lr5:D (2.4Å) |
10 | N/A | URS000086850F | N/A | Homo sapiens 9606 |
28623187 | Assembly2 rna:C:1~10 1~10 |
|
| 5076 |
5lyb:1 (3.25Å) |
3149 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS0000A7632E | RF02543 | Saccharomyces cerevisiae 4932 |
27827794 | ![]() M107_0.6 ![]() M080_0.6 ![]() M299_0.6 ![]() 16 |
Assembly1 rna:2:1~1798 846~848,1935~1936,2125~2126,22 55,2258~2259,2262~2263,2290~22 92,2302~2304 rna:3:1~121 996~998,1052,1054~1056,1156,11 71,1197,1203 rna:4:1~158 3~23,59,143,330~337,339~342,34 4~346,349,351,368~369,404~419, 656~657,691,1394~1395,1398~139 9,1418~1420,1441,1530,1558,158 5,1618,1830~1832,2386~2387,258 5,2994~2995 rna:A:74~76 2820~2821,2875~2876,2922~2924, 2952~2954 |
| 5077 |
5lyb:2 (3.25Å) |
1781 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS00005F2C2D | RF01960 | Saccharomyces cerevisiae 4932 |
27827794 | ![]() 101 ![]() 441 ![]() M080_0.6 ![]() 386 ![]() M107_0.6 ![]() 497 ![]() 490 |
Assembly1 rna:1:3~3396 628~629,971~973,1644~1646,1655 ~1657,1667,1746~1747,1757~1759 ,1780 |
| 5078 |
5lyb:3 (3.25Å) |
121 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS000055688D | RF00001 | Saccharomyces cerevisiae 4932 |
27827794 | Assembly1 rna:1:3~3396 79~82,86,90,100,102~103 |
|
| 5079 |
5lyb:4 (3.25Å) |
158 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS00001BF64E | RF00002 | Saccharomyces cerevisiae 4932 |
27827794 | ![]() 441 |
Assembly1 rna:1:3~3396 1~22,24~33,35~37,40,53~54,104, 106,109~110,113~115,126,129,13 6~152,154~157 |
| 5080 |
5lyb:5 (3.25Å) |
3150 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS0000A7632E | RF02543 | Saccharomyces cerevisiae 4932 |
27827794 | ![]() M107_0.6 ![]() M080_0.6 ![]() M299_0.6 ![]() 16 |
Assembly2 rna:6:1~1800 846~848,1935~1936,2124~2125,22 05,2255~2259,2262~2263,2290~22 92,2302~2304 rna:7:1~121 996~999,1052,1054~1056,1156,11 71,1197,1203 rna:8:1~158 3~23,59,143,330~337,339~342,34 4~346,349,351,368~369,404~419, 656~657,691,1394~1395,1398~139 9,1418~1420,1441,1530,1558,157 1,1585,1618~1619,1830~1832,238 6,2585,2994~2995 rna:a:74~76 2820~2821,2875~2876,2922~2924, 2952~2954 |
| 5081 |
5lyb:6 (3.25Å) |
1795 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS00005F2C2D | RF01960 | Saccharomyces cerevisiae 4932 |
27827794 | ![]() 101 ![]() 441 ![]() M080_0.6 ![]() 386 ![]() M107_0.6 ![]() 497 ![]() 490 |
Assembly2 rna:5:3~3396 628~629,913,971~973,1644~1646, 1655~1657,1667~1668,1746~1747, 1757~1759,1780 |
| 5082 |
5lyb:7 (3.25Å) |
121 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS000055688D | RF00001 | Saccharomyces cerevisiae 4932 |
27827794 | Assembly2 rna:5:3~3396 79~82,86,90,100,102~104 |
|
| 5083 |
5lyb:8 (3.25Å) |
158 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS00001BF64E | RF00002 | Saccharomyces cerevisiae 4932 |
27827794 | ![]() 441 |
Assembly2 rna:5:3~3396 1~22,24~33,35~37,40~41,53~54,1 04,106,110,113~115,126~127,129 ,136~152,154~157 |
| 5084 |
5lza:A (3.6Å) |
2900 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS000080E25C | RF02541 | Escherichia coli 562 |
27842381 | Assembly1 rna:a:2~1540 1702~1703,1837,1846,1848,1912~ 1913,1916,1919~1920,1947~1948, 1959~1961 rna:v:1~76 1908~1909,1923,2063,2251~2253, 2450~2451,2602 rna:B:1~120 861~863,917~918,958 |
|
| 5085 |
5lza:B (3.6Å) |
120 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS0000049E57 | RF00001 | Escherichia coli 562 |
27842381 | Assembly1 rna:A:1~2903 78~80,89,97,99~100 |
|
| 5086 |
5lza:a (3.6Å) |
1539 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS000080DDC0 | RF00177 | Escherichia coli 562 |
27842381 | Assembly1 rna:v:1~76 790,966,1229~1230,1338~1340,14 00 rna:x:87~134 1194,1196,1397,1400~1403,1492~ 1493,1498,1503,1535,1537~1540 rna:A:1~2903 702,784,899,1407~1409,1418,142 9,1483~1484,1493~1496,1517 |
|
| 5087 |
5lza:v (3.6Å) |
77 | GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation |
URS00001BBAFC | RF00005 | Escherichia coli 562 |
27842381 | Assembly1 rna:a:2~1540 30~31,34,38,40~41 rna:x:87~134 34~37 rna:A:1~2903 11~12,24,74~76 |
|
| 5088 |
5lza:x (3.6Å) |
48 | GO:0001514 (P) selenocysteine incorpor... | N/A | RF01988 | Escherichia coli 562 |
27842381 | Assembly1 rna:a:2~1540 89,91~94,96~97,101~105,107~109 rna:v:1~76 101~103 |
|
| 5089 |
5lzb:A (5.3Å) |
2903 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS000080E25C | RF02541 | Escherichia coli 562 |
27842381 | Assembly1 rna:a:2~1540 1703,1837,1846,1848,1894~1895, 1912~1915,1919~1920,1947~1948, 1959~1961 rna:v:1~76 1922~1924,2063,2251~2253,2450~ 2451,2602 rna:y:1~76 1067,1095,2660 rna:B:1~120 861~864,915~919,958 rna:w:74~76 2394~2395,2421~2422,2432 |
|
| 5090 |
5lzb:B (5.3Å) |
120 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS0000049E57 | RF00001 | Escherichia coli 562 |
27842381 | Assembly1 rna:A:1~2903 78~80,89,97,99~100 |
|
| 5091 |
5lzb:a (5.3Å) |
1539 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS000080DDC0 | RF00177 | Escherichia coli 562 |
27842381 | Assembly1 rna:v:1~76 790,966,1229~1231,1338~1339,14 00 rna:x:87~134 693,926,1397,1400~1401,1493~14 94,1498,1503,1506,1534~1540 rna:A:1~2903 702,784,1408~1410,1429,1483~14 85,1492~1495,1517 |
|
| 5092 |
5lzb:v (5.3Å) |
77 | GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation |
URS00001BBAFC | RF00005 | Escherichia coli 562 |
27842381 | Assembly1 rna:a:2~1540 30~31,34,38~41 rna:x:87~134 34~37 rna:A:1~2903 12~13,24~25,74~76 |
|
| 5093 |
5lzb:x (5.3Å) |
48 | GO:0001514 (P) selenocysteine incorpor... | N/A | RF01988 | Escherichia coli 562 |
27842381 | Assembly1 rna:a:2~1540 89~98,100~105,107~108 rna:v:1~76 101~103 |
|
| 5094 |
5lzb:y (5.3Å) |
95 | GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation |
URS00002F9CDD | RF01852 | Escherichia coli 562 |
27842381 | Assembly1 rna:A:1~2903 18,56,63 |
|
| 5095 |
5lzc:A (4.8Å) |
2903 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS000080E25C | RF02541 | Escherichia coli 562 |
27842381 | Assembly1 rna:a:2~1540 1700,1702~1703,1836,1846~1848, 1895,1912~1913,1919~1920,1947~ 1949,1959~1962 rna:v:1~76 1908~1909,1922~1923,2251~2252, 2450~2451,2602 rna:y:1~76 1067~1068,1095,1913,2660 rna:B:1~120 861~864,915,917~919,958,2340 rna:w:74~76 2394~2395,2421~2422,2432 |
|
| 5096 |
5lzc:B (4.8Å) |
120 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS0000049E57 | RF00001 | Escherichia coli 562 |
27842381 | Assembly1 rna:A:1~2903 41,78~81,89~90,96~97,99~100 |
|
| 5097 |
5lzc:a (4.8Å) |
1539 | GO:0003735 (F) structural constituent ... GO:0005840 (C) ribosome |
URS000080DDC0 | RF00177 | Escherichia coli 562 |
27842381 | Assembly1 rna:v:1~76 790,966,1229~1230,1338~1340,14 00 rna:x:87~134 693,926,1054,1397,1400~1401,14 94,1498,1503,1534~1540 rna:A:1~2903 702,783~784,1407~1408,1418,142 8~1429,1474~1475,1483~1485,149 2~1495,1517 |
|
| 5098 |
5lzc:v (4.8Å) |
77 | GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation |
URS00001BBAFC | RF00005 | Escherichia coli 562 |
27842381 | Assembly1 rna:a:2~1540 30~31,34,38~41 rna:x:87~134 34~37 rna:A:1~2903 11~13,24~25,74~76 |
|
| 5099 |
5lzc:x (4.8Å) |
48 | GO:0001514 (P) selenocysteine incorpor... | N/A | RF01988 | Escherichia coli 562 |
27842381 | Assembly1 rna:a:2~1540 89,91~94,96~98,100~104,107~108 rna:v:1~76 101~103 rna:y:1~76 104,106 |
|
| 5100 |
5lzc:y (4.8Å) |
95 | GO:0030533 (F) triplet codon-amino aci... GO:0006412 (P) translation |
URS00002F9CDD | RF01852 | Escherichia coli 562 |
27842381 | Assembly1 rna:x:87~134 34~35 rna:A:1~2903 37,55~57,64 |
Download all results in tab-seperated text for
16611 RNAs.
Click the entry in the '#' column to view structure details of that RNA chain.
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Hover over Rfam to view names of Rfam families.
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Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.
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