SEQ2FUN

FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over PubMed to view title of the PubMed publications.
  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    5001 5li0:a
    (3.8Å)
    		 1547 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000B21DF7 RF00177
    RF01959
    RF01960    		 Staphylococcus
    aureus
    subsp.
    aureus
    NCTC
    8325
    93061    		 27906650 Assembly1
    rna:A:3~2920 710,1418~1420,1429,1495~1496,1
    506~1507,1529
    5002 5lj3:E
    (3.8Å)
    		 16 N/A URS0000B21E0A N/A Saccharomyces
    cerevisiae
    4932    		 27459055 Assembly1
    rna:U:4~173 -5~-1
    5003 5lj3:I
    (3.8Å)
    		 33 N/A N/A N/A Saccharomyces
    cerevisiae
    4932    		 27459055
    132

    387

    168

    403    		 Assembly1
    rna:Z:3~1169 2,54~56,58~60,66~69,71~73
    rna:V:1~102 3~8,70~71
    5004 5lj3:U
    (3.8Å)
    		 141 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS0000514318 RF00020 Saccharomyces
    cerevisiae
    4932    		 27459055 Assembly1
    rna:E:-16~-1 97~100
    rna:V:1~102 98~100
    5005 5lj3:V
    (3.8Å)
    		 97 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00006184A9 RF00026 Saccharomyces
    cerevisiae
    4932    		 27459055
    383    		 Assembly1
    rna:U:4~173 72~73,75~76
    rna:I:1~76 45~51,58~59,79
    rna:Z:3~1169 53,55~62,88,92~102
    5006 5lj3:Z
    (3.8Å)
    		 171 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS000023C730 RF00004 Saccharomyces
    cerevisiae
    4932    		 27459055
    9    		 Assembly1
    rna:I:1~76 31,33~39,42~43,45~47
    rna:V:1~102 3~14,16,21~23,26~29
    5007 5lj5:E
    (10.0Å)
    		 16 N/A URS0000B21E0A N/A Saccharomyces
    cerevisiae
    4932    		 27459055 Assembly1
    rna:U:4~173 -5~-1
    5008 5lj5:I
    (10.0Å)
    		 33 N/A N/A N/A Saccharomyces
    cerevisiae
    4932    		 27459055
    132

    387

    168

    403    		 Assembly1
    rna:Z:3~1169 2,54~56,58~60,66~69,71~73
    rna:V:1~102 3~8,70~71
    5009 5lj5:U
    (10.0Å)
    		 141 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS0000514318 RF00020 Saccharomyces
    cerevisiae
    4932    		 27459055 Assembly1
    rna:E:-16~-1 97~100
    rna:V:1~102 98~100
    5010 5lj5:V
    (10.0Å)
    		 97 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00006184A9 RF00026 Saccharomyces
    cerevisiae
    4932    		 27459055
    383    		 Assembly1
    rna:U:4~173 72~73,75~76
    rna:I:1~76 45~51,58~59,79
    rna:Z:3~1169 53,55~62,88,92~102
    5011 5lj5:Z
    (10.0Å)
    		 171 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS000023C730 RF00004 Saccharomyces
    cerevisiae
    4932    		 27459055
    9    		 Assembly1
    rna:I:1~76 31,33~39,42~43,45~47
    rna:V:1~102 3~13,16,21~23,26~29
    5012 5lks:L5
    (3.6Å)
    		 3776 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000086853A RF02543
    RF02540    		 Homo
    sapiens
    9606    		 27665925
    25901680
    M054_0.6

    1306

    769

    706

    1303

    762

    763

    1148

    1149

    764

    870

    167

    21

    1079

    1029

    1075

    1072

    1073

    M104_0.6

    1071

    819

    1373

    938

    546

    s52

    s51

    s50

    931

    930

    936

    s59

    995

    994

    595

    1314

    991

    1312

    1311

    1028

    1150

    673

    123

    124

    125

    M290_0.6

    1068

    1017

    1060

    s100

    s102

    52

    533

    M227_0.6

    1384

    375

    s49

    926

    822

    1128

    988

    1321

    708

    704

    705

    1328

    707

    1124

    987

    1126

    703

    M077_0.6

    s18

    83

    1181

    797

    796

    795

    836

    837

    791

    727

    838

    1334

    s70

    1016

    s72

    1393

    610

    1012

    1013

    1236

    1237

    1231

    1232

    1233

    1335

    s17

    M109_0.6

    1336

    1331

    1239

    1333

    589

    M273_0.6

    s99

    1389

    902

    821

    900

    901

    906

    905

    33

    s48

    853

    M102_0.6

    924

    M044_0.6

    1245

    s62

    s96

    1227

    883

    M035_0.6

    1223

    M156_0.6

    604

    M320_0.6

    1347

    60

    s81

    M349_0.6

    1083

    175

    1026

    100

    42

    s61

    977

    976

    974

    852

    970

    M154_0.6

    884

    s55

    979

    M153_0.6

    183

    1238

    185

    1375

    1036

    503

    1034

    1035

    1212

    1043

    1211

    1216

    1042

    986

    467

    M148_0.6

    1354

    M103_0.6

    91

    1127

    162

    M070_0.6

    813

    M020_0.6

    M050_0.6

    1187

    1182

    815

    1037

    1107

    M347_0.6

    722

    935

    M086_0.6

    1164

    1165

    1166

    606

    886

    156

    748

    749

    608

    s77

    M061_0.6

    958

    1055

    878

    879

    1059

    953

    952

    872

    954

    957

    M272_0.6

    1352

    774

    1215

    776

    1173

    770

    773

    1183

    1271

    1272

    1273

    779

    778

    1178

    M151_0.6

    78

    1285

    M083_0.6

    1041

    1040

    1045

    1044

    790

    1288

    354

    688

    1360

    684

    800

    1368

    804    		 Assembly1
    rna:L7:1~120 1736~1738,1741,1792,1794~1796,
    1894,1909,1936
    rna:L8:1~156 2~22,58,146,338~339,341~348,35
    0~352,356~357,360,362,379~380,
    415~419,421~430,1305,1333~1334
    ,2308~2309,2312~2313,2333~2334
    ,2355,2444~2445,2472,2493~2494
    ,2544,2778~2779,3890~3891,4573
    rna:S2:1~1869 1563,2884,3628~3629,3695,3711,
    3759~3761,3765~3766,3794~3796,
    3806
    5013 5lks:L7
    (3.6Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000F9D45 RF00001 Homo
    sapiens
    9606    		 27665925
    25901680
    931

    1290

    s51

    879    		 Assembly1
    rna:L5:1~5069 77~80,84,97~98,101,103
    5014 5lks:L8
    (3.6Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000005270 RF00002 Homo
    sapiens
    9606    		 27665925
    25901680
    1227

    592

    s24

    993

    1215

    1352

    s37

    1238

    1178

    M085_0.6

    1389

    1360

    589

    375

    M106_0.6    		 Assembly1
    rna:L5:1~5069 1,3~13,15~22,24~37,40,53~54,10
    3,108,112~113,124,126~127,136,
    139~149,151~156
    5015 5lks:S2
    (3.6Å)
    		 1742 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000868520 RF01960
    RF01959
    RF00177    		 Homo
    sapiens
    9606    		 27665925
    25901680
    1303

    1263

    872

    1149

    1267

    764

    954

    957

    692

    1079

    1075

    1072

    1073

    819

    346

    546

    1378

    930

    936

    935

    M296_0.6

    1314

    M141_0.6

    1068

    s72

    M147_0.6

    1060

    s102

    1384

    1386

    M016_0.6

    s48

    926

    822

    1128

    1323

    988

    595

    1327

    707

    986

    796

    836

    762

    790

    838

    1124

    1017

    1393

    1392

    1390

    1236

    1335

    1334

    M109_0.6

    1238

    M273_0.6

    s14

    445

    s99

    1311

    105

    902

    900

    905

    821

    788

    1333

    924

    1244

    s62

    s96

    M074_0.6

    335

    60

    1167

    977

    976

    974

    852

    970

    509

    1037

    1035

    1213

    756

    639

    M148_0.6

    786

    1355

    M065_0.6

    93

    167

    M070_0.6

    813

    M050_0.6

    1188

    1022

    1187

    1029

    815

    727

    722

    883

    604

    606

    884

    749

    779

    608

    996

    M037_0.6

    1055

    878

    1059

    952

    1195

    43

    870

    1380

    325

    758

    770

    610

    1274

    1042

    M127_0.6

    s24

    s61

    804    		 Assembly1
    rna:L5:1~5069 677,970,1028~1029,1180,1708~17
    10,1719,1721,1731,1815~1816,18
    25~1828,1849~1850
    5016 5lmn:A
    (3.55Å)
    		 1514 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 27662086 Assembly1
    rna:Y:20~39 790,926,1497,1534~1542
    5017 5lmn:Y
    (3.55Å)
    		 20 N/A N/A N/A Thermus
    thermophilus
    HB8
    300852    		 27662086 Assembly1
    rna:A:5~1542 22~32,35~36
    5018 5lmo:A
    (4.3Å)
    		 1514 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 27662086 Assembly1
    rna:Y:20~32 1534~1542
    5019 5lmo:Y
    (4.3Å)
    		 13 N/A N/A N/A Thermus
    thermophilus
    HB8
    300852    		 27662086 Assembly1
    rna:A:5~1542 22~32
    5020 5lmp:A
    (5.35Å)
    		 1514 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 27662086 Assembly1
    rna:Y:20~39 790,926,1497,1534~1542
    5021 5lmp:Y
    (5.35Å)
    		 20 N/A N/A N/A Thermus
    thermophilus
    HB8
    300852    		 27662086 Assembly1
    rna:A:5~1542 22~32,35~36
    5022 5lmq:A
    (4.2Å)
    		 1514 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 27662086 Assembly1
    rna:Y:20~40 693,926,1400,1534~1542
    rna:Z:1~76 966,1338~1340,1400
    5023 5lmq:Y
    (4.2Å)
    		 21 N/A N/A N/A Thermus
    thermophilus
    HB8
    300852    		 27662086 Assembly1
    rna:A:5~1542 22,24~33,35,38
    rna:Z:1~76 36~38
    5024 5lmq:Z
    (4.2Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 27662086 Assembly1
    rna:A:5~1542 29~30,34,42
    rna:Y:20~40 34~37
    5025 5lmr:A
    (4.45Å)
    		 1515 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 27662086 Assembly1
    rna:Y:20~39 926,1400,1532~1542
    rna:Z:1~76 966,1229~1230,1338~1341
    5026 5lmr:Y
    (4.45Å)
    		 17 N/A N/A N/A Thermus
    thermophilus
    HB8
    300852    		 27662086 Assembly1
    rna:A:5~1542 22,24~32,37,39
    rna:Z:1~76 36~38
    5027 5lmr:Z
    (4.45Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    HB8
    300852    		 27662086 Assembly1
    rna:A:5~1542 29~32,34,41~42
    rna:Y:20~39 34~37
    5028 5lms:A
    (5.1Å)
    		 1514 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 27662086 Assembly1
    rna:Y:20~39 926,1400~1401,1505~1506,1534~1
    542
    rna:Z:1~76 966,1338~1339
    5029 5lms:Y
    (5.1Å)
    		 20 N/A N/A N/A Thermus
    thermophilus
    274    		 27662086 Assembly1
    rna:A:5~1542 22,24~31,35,38
    rna:Z:1~76 36~39
    5030 5lms:Z
    (5.1Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 27662086 Assembly1
    rna:A:5~1542 34,41~42
    rna:Y:20~39 34~37
    5031 5lmt:A
    (4.15Å)
    		 1515 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 27662086 Assembly1
    rna:Y:20~39 926,1400~1401,1498,1505~1506,1
    534~1542
    rna:Z:1~76 790,966,1229~1230,1338~1341,14
    00
    5032 5lmt:Y
    (4.15Å)
    		 20 N/A N/A N/A Thermus
    thermophilus
    274    		 27662086 Assembly1
    rna:A:5~1542 22~32,35~39
    rna:Z:1~76 36~38
    5033 5lmt:Z
    (4.15Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Thermus
    thermophilus
    HB8
    300852    		 27662086 Assembly1
    rna:A:5~1542 30~32,34,38,41~42
    rna:Y:20~39 34~37
    5034 5lmu:A
    (4.0Å)
    		 1515 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 27662086 Assembly1
    rna:Y:20~39 926,1400~1401,1498,1505,1534~1
    542
    rna:Z:1~76 790,966,1229~1230,1338~1341,14
    00
    5035 5lmu:Y
    (4.0Å)
    		 20 N/A N/A N/A Thermus
    thermophilus
    HB8
    300852    		 27662086 Assembly1
    rna:A:5~1542 22~32,35~38
    rna:Z:1~76 36~38
    5036 5lmu:Z
    (4.0Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 27662086 Assembly1
    rna:A:5~1542 29~32,34,38~41
    rna:Y:20~39 34~37
    5037 5lmv:A
    (4.9Å)
    		 1515 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 27662086 Assembly1
    rna:Y:20~39 926,1400~1401,1498,1505,1534~1
    542
    rna:Z:1~76 790,966,1229~1230,1338~1341,14
    00
    5038 5lmv:Y
    (4.9Å)
    		 20 N/A N/A N/A Thermus
    thermophilus
    HB8
    300852    		 27662086 Assembly1
    rna:A:5~1542 22~32,35~38
    rna:Z:1~76 36~38
    5039 5lmv:Z
    (4.9Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 27662086 Assembly1
    rna:A:5~1542 29~32,34,38~41
    rna:Y:20~39 34~37
    5040 5lqo:A
    (1.87Å)
    		 10 N/A URS0000BC467A N/A Homo
    sapiens
    9606    		 28623187 Assembly1
    rna:B:1~10 1~10
    5041 5lqo:B
    (1.87Å)
    		 10 N/A URS0000BC467A N/A Homo
    sapiens
    9606    		 28623187 Assembly1
    rna:A:1~10 1~10
    5042 5lqt:A
    (1.5Å)
    		 10 N/A URS0000BC467A N/A Homo
    sapiens
    9606    		 28623187 Assembly1
    rna:B:1~10 1~10
    5043 5lqt:B
    (1.5Å)
    		 10 N/A URS0000BC467A N/A Homo
    sapiens
    9606    		 28623187 Assembly1
    rna:A:1~10 1~10
    5044 5lqw:2
    (5.8Å)
    		 81 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS000023C730 RF00004 Saccharomyces
    cerevisiae
    4932    		 27562955 Assembly1
    rna:6:1~102 3~13,17,20~23,26~29
    rna:9:2~518 34~39,41
    5045 5lqw:5
    (5.8Å)
    		 141 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS0000514318 RF00020 Saccharomyces
    cerevisiae
    4932    		 27562955 Assembly1
    rna:6:1~102 98~99
    rna:9:2~518 97,99
    5046 5lqw:6
    (5.8Å)
    		 102 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00006184A9 RF00026 Saccharomyces
    cerevisiae
    4932    		 27562955
    383    		 Assembly1
    rna:2:3~83 55~63,86,93~102
    rna:5:4~173 73,75
    rna:9:2~518 46~50,77~79
    5047 5lqw:9
    (5.8Å)
    		 54 N/A N/A N/A Saccharomyces
    cerevisiae
    4932    		 27562955
    132

    387

    168

    403    		 Assembly1
    rna:2:3~83 495~500,502~503
    rna:5:4~173 19,21~22
    rna:6:1~102 21,25~29
    5048 5lr3:A
    (1.65Å)
    		 10 N/A URS0000BC46A2 N/A Homo
    sapiens
    9606    		 28623187 Assembly1
    rna:B:1 1~10
    5049 5lr3:B
    (1.65Å)
    		 10 N/A URS0000BC46A2 N/A Homo
    sapiens
    9606    		 28623187 Assembly1
    rna:A:1~10 1~10
    5050 5lr4:A
    (1.8Å)
    		 10 N/A URS0000BC46A2 N/A Homo
    sapiens
    9606    		 28623187 Assembly1
    rna:B:1~10 1~10
    5051 5lr4:B
    (1.8Å)
    		 10 N/A URS0000BC46A2 N/A Homo
    sapiens
    9606    		 28623187 Assembly1
    rna:A:1~10 1~6,8~10
    5052 5lr4:C
    (1.8Å)
    		 10 N/A URS0000BC46A2 N/A Homo
    sapiens
    9606    		 28623187 Assembly2
    rna:D:1~10 1~10
    5053 5lr4:D
    (1.8Å)
    		 10 N/A URS0000BC46A2 N/A Homo
    sapiens
    9606    		 28623187 Assembly2
    rna:C:1~10 1~10
    5054 5lr5:A
    (2.4Å)
    		 10 N/A URS000086850F N/A Homo
    sapiens
    9606    		 28623187 Assembly1
    rna:B:1~10 1~10
    5055 5lr5:B
    (2.4Å)
    		 10 N/A URS000086850F N/A Homo
    sapiens
    9606    		 28623187 Assembly1
    rna:A:1~10 1~10
    5056 5lr5:C
    (2.4Å)
    		 10 N/A URS000086850F N/A Homo
    sapiens
    9606    		 28623187 Assembly2
    rna:D:1~10 1~10
    5057 5lr5:D
    (2.4Å)
    		 10 N/A URS000086850F N/A Homo
    sapiens
    9606    		 28623187 Assembly2
    rna:C:1~10 1~10
    5058 5lyb:1
    (3.25Å)
    		 3149 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632E RF02540
    RF02543    		 Saccharomyces
    cerevisiae
    4932    		 27827794
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:2:1~1798 846~848,1935~1936,2125~2126,22
    55,2258~2259,2262~2263,2290~22
    92,2302~2304
    rna:3:1~121 996~998,1052,1054~1056,1156,11
    71,1197,1203
    rna:4:1~158 3~23,59,143,330~337,339~342,34
    4~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1398~139
    9,1418~1420,1441,1530,1558,158
    5,1618,1830~1832,2386~2387,258
    5,2994~2995
    rna:A:74~76 2820~2821,2875~2876,2922~2924,
    2952~2954
    5059 5lyb:2
    (3.25Å)
    		 1781 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2C2D RF01960
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 27827794
    101

    441

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:1:3~3396 628~629,971~973,1644~1646,1655
    ~1657,1667,1746~1747,1757~1759
    ,1780
    5060 5lyb:3
    (3.25Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 27827794 Assembly1
    rna:1:3~3396 79~82,86,90,100,102~103
    5061 5lyb:4
    (3.25Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 27827794
    441    		 Assembly1
    rna:1:3~3396 1~22,24~33,35~37,40,53~54,104,
    106,109~110,113~115,126,129,13
    6~152,154~157
    5062 5lyb:5
    (3.25Å)
    		 3150 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632E RF02540
    RF02543    		 Saccharomyces
    cerevisiae
    4932    		 27827794
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly2
    rna:6:1~1800 846~848,1935~1936,2124~2125,22
    05,2255~2259,2262~2263,2290~22
    92,2302~2304
    rna:7:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1203
    rna:8:1~158 3~23,59,143,330~337,339~342,34
    4~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1398~139
    9,1418~1420,1441,1530,1558,157
    1,1585,1618~1619,1830~1832,238
    6,2585,2994~2995
    rna:a:74~76 2820~2821,2875~2876,2922~2924,
    2952~2954
    5063 5lyb:6
    (3.25Å)
    		 1795 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2C2D RF01960
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 27827794
    101

    441

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly2
    rna:5:3~3396 628~629,913,971~973,1644~1646,
    1655~1657,1667~1668,1746~1747,
    1757~1759,1780
    5064 5lyb:7
    (3.25Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 27827794 Assembly2
    rna:5:3~3396 79~82,86,90,100,102~104
    5065 5lyb:8
    (3.25Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 27827794
    441    		 Assembly2
    rna:5:3~3396 1~22,24~33,35~37,40~41,53~54,1
    04,106,110,113~115,126~127,129
    ,136~152,154~157
    5066 5lza:A
    (3.6Å)
    		 2900 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 1702~1703,1837,1846,1848,1912~
    1913,1916,1919~1920,1947~1948,
    1959~1961
    rna:v:1~76 1908~1909,1923,2063,2251~2253,
    2450~2451,2602
    rna:B:1~120 861~863,917~918,958
    5067 5lza:B
    (3.6Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:A:1~2903 78~80,89,97,99~100
    5068 5lza:a
    (3.6Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:v:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:x:87~134 1194,1196,1397,1400~1403,1492~
    1493,1498,1503,1535,1537~1540
    rna:A:1~2903 702,784,899,1407~1409,1418,142
    9,1483~1484,1493~1496,1517
    5069 5lza:v
    (3.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 30~31,34,38,40~41
    rna:x:87~134 34~37
    rna:A:1~2903 11~12,24,74~76
    5070 5lza:x
    (3.6Å)
    		 48 GO:0001514 (P) selenocysteine incorpor... N/A RF01988 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 89,91~94,96~97,101~105,107~109
    rna:v:1~76 101~103
    5071 5lzb:A
    (5.3Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 1703,1837,1846,1848,1894~1895,
    1912~1915,1919~1920,1947~1948,
    1959~1961
    rna:v:1~76 1922~1924,2063,2251~2253,2450~
    2451,2602
    rna:y:1~76 1067,1095,2660
    rna:B:1~120 861~864,915~919,958
    rna:w:74~76 2394~2395,2421~2422,2432
    5072 5lzb:B
    (5.3Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:A:1~2903 78~80,89,97,99~100
    5073 5lzb:a
    (5.3Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:v:1~76 790,966,1229~1231,1338~1339,14
    00
    rna:x:87~134 693,926,1397,1400~1401,1493~14
    94,1498,1503,1506,1534~1540
    rna:A:1~2903 702,784,1408~1410,1429,1483~14
    85,1492~1495,1517
    5074 5lzb:v
    (5.3Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 30~31,34,38~41
    rna:x:87~134 34~37
    rna:A:1~2903 12~13,24~25,74~76
    5075 5lzb:x
    (5.3Å)
    		 48 GO:0001514 (P) selenocysteine incorpor... N/A RF01988 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 89~98,100~105,107~108
    rna:v:1~76 101~103
    5076 5lzb:y
    (5.3Å)
    		 95 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002F9CDD RF01852 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:A:1~2903 18,56,63
    5077 5lzc:A
    (4.8Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 1700,1702~1703,1836,1846~1848,
    1895,1912~1913,1919~1920,1947~
    1949,1959~1962
    rna:v:1~76 1908~1909,1922~1923,2251~2252,
    2450~2451,2602
    rna:y:1~76 1067~1068,1095,1913,2660
    rna:B:1~120 861~864,915,917~919,958,2340
    rna:w:74~76 2394~2395,2421~2422,2432
    5078 5lzc:B
    (4.8Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:A:1~2903 41,78~81,89~90,96~97,99~100
    5079 5lzc:a
    (4.8Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:v:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:x:87~134 693,926,1054,1397,1400~1401,14
    94,1498,1503,1534~1540
    rna:A:1~2903 702,783~784,1407~1408,1418,142
    8~1429,1474~1475,1483~1485,149
    2~1495,1517
    5080 5lzc:v
    (4.8Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 30~31,34,38~41
    rna:x:87~134 34~37
    rna:A:1~2903 11~13,24~25,74~76
    5081 5lzc:x
    (4.8Å)
    		 48 GO:0001514 (P) selenocysteine incorpor... N/A RF01988 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 89,91~94,96~98,100~104,107~108
    rna:v:1~76 101~103
    rna:y:1~76 104,106
    5082 5lzc:y
    (4.8Å)
    		 95 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002F9CDD RF01852 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:x:87~134 34~35
    rna:A:1~2903 37,55~57,64
    5083 5lzd:A
    (3.4Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 1701~1703,1836~1837,1846,1848,
    1912~1914,1916,1919~1920,1947~
    1949,1959~1961
    rna:v:1~76 1907~1909,1922~1923,2064,2251~
    2253,2255,2450~2451,2602
    rna:B:1~120 861~864,915,917~918,958
    rna:w:74~76 2394~2395,2421~2422,2432
    5084 5lzd:B
    (3.4Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:A:1~2903 78~80,89,96~97,99~100
    5085 5lzd:a
    (3.4Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:v:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:x:87~134 530,693,926,1196,1397,1400~140
    1,1492~1493,1498,1503,1537~154
    0
    rna:y:1~76 515~516,530~531,1054,1493
    rna:A:1~2903 702,783~784,899,1407~1409,1418
    ,1429,1474,1483~1484,1494~1496
    ,1517
    5086 5lzd:v
    (3.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 30~32,34,38~41
    rna:x:87~134 34~37
    rna:A:1~2903 11~12,24~25,74~76
    5087 5lzd:x
    (3.4Å)
    		 48 GO:0001514 (P) selenocysteine incorpor... N/A RF01988 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 89,91~94,97~98,101~105,108
    rna:v:1~76 101~103
    rna:y:1~76 104~106
    5088 5lzd:y
    (3.4Å)
    		 95 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002F9CDD RF01852 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 34~37,47I
    rna:x:87~134 34~36
    rna:A:1~2903 37~38
    5089 5lze:A
    (3.5Å)
    		 2900 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 1702~1703,1836~1837,1846,1848,
    1912~1914,1916,1919~1920,1947~
    1949,1959~1960
    rna:v:1~76 1907~1909,1923~1924,2064,2251~
    2253,2450~2451
    rna:y:1~76 898,1913,2470,2482,2507,2553~2
    555,2573,2583~2584,2602
    rna:B:1~120 861~864,917~919,958~959
    rna:w:74~76 2394~2395,2421~2422,2432
    5090 5lze:B
    (3.5Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:A:1~2903 78~81,89~90,96~97,99~100
    5091 5lze:a
    (3.5Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:v:1~76 790,966,1229~1230,1338~1340
    rna:x:87~134 530,926~927,1195~1196,1397,140
    0~1403,1492~1493,1498,1503,153
    4,1536~1540
    rna:y:1~76 530~531,1054,1493
    rna:A:1~2903 702,783~784,899,1407~1409,1418
    ,1429,1483~1484,1494~1496,1517
    5092 5lze:v
    (3.5Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 30~31,34,38,40~41
    rna:x:87~134 34~37
    rna:A:1~2903 11~13,24,74~76
    5093 5lze:x
    (3.5Å)
    		 48 GO:0001514 (P) selenocysteine incorpor... N/A RF01988 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 89~95,97,101~109
    rna:v:1~76 101~103
    rna:y:1~76 104~106
    5094 5lze:y
    (3.5Å)
    		 95 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002F9CDD RF01852 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 34~37
    rna:x:87~134 34~37
    rna:A:1~2903 18,37~38,52,56,63,74~76
    5095 5lzf:A
    (4.6Å)
    		 2900 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02540
    RF02541    		 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 1912~1914,1919~1920,1959,1961
    rna:v:1~76 1850~1851,1892,2168,2421~2422,
    2432
    rna:y:1~76 896,1913,2251~2253,2309,2602
    rna:B:1~120 862~863,915,917~919,958
    5096 5lzf:B
    (4.6Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:A:1~2903 78,80,89~90,97,99~100
    5097 5lzf:a
    (4.6Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:v:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:x:87~134 530,926,1196,1397,1400~1401,14
    92~1493,1498,1503,1535~1540
    rna:y:1~76 530,1054,1493
    rna:A:1~2903 1407~1410,1418,1483~1485,1494~
    1495,1517
    5098 5lzf:v
    (4.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 30~31,34,38~39,41~42
    rna:x:87~134 34~37
    rna:A:1~2903 3,56,71~72,75~76
    5099 5lzf:x
    (4.6Å)
    		 48 GO:0001514 (P) selenocysteine incorpor... N/A RF01988 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 90~97,101~105,108
    rna:v:1~76 101~103
    rna:y:1~76 104~106
    5100 5lzf:y
    (4.6Å)
    		 95 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002F9CDD RF01852 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 34~37
    rna:x:87~134 34~37
    rna:A:1~2903 38,47O,56,74~76
    << < 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.