SEQ2FUN

FURNA
Download all results in tab-seperated text for 16611 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    5101 5lzd:A
    (3.4Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02541 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 1701~1703,1836~1837,1846,1848,
    1912~1914,1916,1919~1920,1947~
    1949,1959~1961
    rna:v:1~76 1907~1909,1922~1923,2064,2251~
    2253,2255,2450~2451,2602
    rna:B:1~120 861~864,915,917~918,958
    rna:w:74~76 2394~2395,2421~2422,2432
    5102 5lzd:B
    (3.4Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:A:1~2903 78~80,89,96~97,99~100
    5103 5lzd:a
    (3.4Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:v:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:x:87~134 530,693,926,1196,1397,1400~140
    1,1492~1493,1498,1503,1537~154
    0
    rna:y:1~76 515~516,530~531,1054,1493
    rna:A:1~2903 702,783~784,899,1407~1409,1418
    ,1429,1474,1483~1484,1494~1496
    ,1517
    5104 5lzd:v
    (3.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 30~32,34,38~41
    rna:x:87~134 34~37
    rna:A:1~2903 11~12,24~25,74~76
    5105 5lzd:x
    (3.4Å)
    		 48 GO:0001514 (P) selenocysteine incorpor... N/A RF01988 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 89,91~94,97~98,101~105,108
    rna:v:1~76 101~103
    rna:y:1~76 104~106
    5106 5lzd:y
    (3.4Å)
    		 95 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002F9CDD RF01852 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 34~37,47I
    rna:x:87~134 34~36
    rna:A:1~2903 37~38
    5107 5lze:A
    (3.5Å)
    		 2900 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02541 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 1702~1703,1836~1837,1846,1848,
    1912~1914,1916,1919~1920,1947~
    1949,1959~1960
    rna:v:1~76 1907~1909,1923~1924,2064,2251~
    2253,2450~2451
    rna:y:1~76 898,1913,2470,2482,2507,2553~2
    555,2573,2583~2584,2602
    rna:B:1~120 861~864,917~919,958~959
    rna:w:74~76 2394~2395,2421~2422,2432
    5108 5lze:B
    (3.5Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:A:1~2903 78~81,89~90,96~97,99~100
    5109 5lze:a
    (3.5Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:v:1~76 790,966,1229~1230,1338~1340
    rna:x:87~134 530,926~927,1195~1196,1397,140
    0~1403,1492~1493,1498,1503,153
    4,1536~1540
    rna:y:1~76 530~531,1054,1493
    rna:A:1~2903 702,783~784,899,1407~1409,1418
    ,1429,1483~1484,1494~1496,1517
    5110 5lze:v
    (3.5Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 30~31,34,38,40~41
    rna:x:87~134 34~37
    rna:A:1~2903 11~13,24,74~76
    5111 5lze:x
    (3.5Å)
    		 48 GO:0001514 (P) selenocysteine incorpor... N/A RF01988 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 89~95,97,101~109
    rna:v:1~76 101~103
    rna:y:1~76 104~106
    5112 5lze:y
    (3.5Å)
    		 95 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002F9CDD RF01852 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 34~37
    rna:x:87~134 34~37
    rna:A:1~2903 18,37~38,52,56,63,74~76
    5113 5lzf:A
    (4.6Å)
    		 2900 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02541 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 1912~1914,1919~1920,1959,1961
    rna:v:1~76 1850~1851,1892,2168,2421~2422,
    2432
    rna:y:1~76 896,1913,2251~2253,2309,2602
    rna:B:1~120 862~863,915,917~919,958
    5114 5lzf:B
    (4.6Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:A:1~2903 78,80,89~90,97,99~100
    5115 5lzf:a
    (4.6Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:v:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:x:87~134 530,926,1196,1397,1400~1401,14
    92~1493,1498,1503,1535~1540
    rna:y:1~76 530,1054,1493
    rna:A:1~2903 1407~1410,1418,1483~1485,1494~
    1495,1517
    5116 5lzf:v
    (4.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 30~31,34,38~39,41~42
    rna:x:87~134 34~37
    rna:A:1~2903 3,56,71~72,75~76
    5117 5lzf:x
    (4.6Å)
    		 48 GO:0001514 (P) selenocysteine incorpor... N/A RF01988 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 90~97,101~105,108
    rna:v:1~76 101~103
    rna:y:1~76 104~106
    5118 5lzf:y
    (4.6Å)
    		 95 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002F9CDD RF01852 Escherichia
    coli
    562    		 27842381 Assembly1
    rna:a:2~1540 34~37
    rna:x:87~134 34~37
    rna:A:1~2903 38,47O,56,74~76
    5119 5lzs:2
    (3.31Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS0000868530 RF00005 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:3:1~76 40~41
    rna:5:1~5069 12,25,74~76
    rna:9:1~1869 30~32,34,38,40~41
    rna:hh:16~25 34~37
    5120 5lzs:3
    (3.31Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000086855F RF00005 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 35~36
    rna:5:1~5069 3~4,70~72,75~76
    rna:9:1~1869 34~35
    5121 5lzs:5
    (3.31Å)
    		 3543 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632C RF02543 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 3770~3771,4196~4198,4396~4397,
    4531,4547~4548
    rna:3:1~76 3714~3715,3738~3740,4341~4342,
    4370~4371
    rna:7:1~119 1736~1738,1741,1792~1796,1894,
    1909,1936,1942
    rna:8:1~156 2~22,58,146,339,341~348,350~35
    3,355~357,360,362,379~380,415~
    430,1304~1305,1333~1334,1371,2
    308~2309,2312~2313,2332~2334,2
    355,2444,2472,2486,2508~2509,2
    542,2544,2778~2779
    rna:9:1~1869 1563~1565,2884,3629,3695,3699~
    3700,3712,3759~3763,3766~3767,
    3794~3797,3806~3807,3834
    rna:ii:1~77 1981,3760
    5122 5lzs:7
    (3.31Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 77~80,84,88,97~104
    5123 5lzs:8
    (3.31Å)
    		 151 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B2C76 RF00002 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 4~22,24~37,40~41,53,103,108,11
    0,112~113,115,124~126,128,137~
    155
    5124 5lzs:9
    (3.31Å)
    		 1697 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005A14E2 RF01960 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 1058,1248,1524~1525,1639~1641,
    1701
    rna:3:1~76 1641~1642
    rna:5:1~5069 677~678,970,1028~1029,1051~105
    2,1180,1708~1710,1719~1721,173
    1,1815~1816,1826~1828,1849
    rna:hh:16~25 1207,1701~1702,1824~1825,1830,
    1837
    rna:ii:1~77 626~627,1331,1825
    5125 5lzs:hh
    (3.31Å)
    		 10 N/A N/A N/A Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 19~21
    rna:9:1~1869 18~23,25
    rna:ii:1~77 22~25
    5126 5lzs:ii
    (3.31Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS0000868530 RF00005 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 19,39,57
    rna:9:1~1869 35~38
    rna:hh:16~25 35~38
    5127 5lzt:2
    (3.65Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS0000868530 RF00005 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:3:1~76 40~41
    rna:5:1~5069 2~3,12,24,74~76
    rna:9:1~1869 30~32,34,38,40~41
    rna:hh:41~55 34~37
    5128 5lzt:3
    (3.65Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000086855F RF00005 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 3~4,70~72,75~76
    rna:9:1~1869 34~35
    5129 5lzt:5
    (3.65Å)
    		 3543 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632C RF02543 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 3770,4196~4198,4200~4201,4396~
    4397,4531,4548
    rna:3:1~76 3714~3716,3738~3740,4341~4342,
    4370~4371
    rna:7:1~120 1736~1738,1741,1792~1796,1894,
    1909,1936,1942
    rna:8:1~156 2~22,58,146,339,341~348,350~35
    3,355~357,360,362,379~380,415~
    430,1304~1305,1333~1334,1371,2
    308~2309,2312~2313,2333,2355,2
    444~2445,2472,2486,2508~2509,2
    542,2544,2778~2779,3890~3891,4
    163
    rna:9:1~1869 1563~1565,2884,3629,3695,3712,
    3759~3760,3762~3763,3766~3767,
    3794~3796,3806~3807
    5130 5lzt:7
    (3.65Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 77~80,84,88,97~98,100~101,103~
    104
    5131 5lzt:8
    (3.65Å)
    		 151 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B2C76 RF00002 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 3~22,24~37,40~41,53~54,103,108
    ,112~113,115,124~126,128,136~1
    55
    5132 5lzt:9
    (3.65Å)
    		 1698 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7639A RF01960 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 1058,1248,1524~1525,1639~1641,
    1701
    rna:3:1~76 1641~1642
    rna:5:1~5069 677~678,970,1028~1029,1180,170
    8~1710,1719~1721,1731,1815~181
    6,1825~1828,1849
    rna:hh:41~55 626,961,1207,1698,1701~1702,18
    25,1830
    5133 5lzt:hh
    (3.65Å)
    		 15 N/A N/A N/A Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 46~48
    rna:9:1~1869 43,45~48,50,52~53
    5134 5lzu:2
    (3.75Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS0000868530 RF00005 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 12,74~76
    rna:9:1~1869 30~32,34,38,40~41
    rna:hh:41~55 34~37
    5135 5lzu:3
    (3.75Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000086855F RF00005 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 3~4,70~72,75~76
    rna:9:1~1869 34~35
    5136 5lzu:5
    (3.75Å)
    		 3543 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632C RF02543 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 3770,4196~4198,4396~4397,4531,
    4548
    rna:3:1~76 3714~3715,3738~3740,4341~4342,
    4370~4371
    rna:7:1~120 1736~1738,1741,1792~1796,1894,
    1909,1936,1942
    rna:8:1~156 2~22,58,193,339,341~348,350~35
    3,355~357,360,362,379~380,415~
    430,1304~1305,1333~1334,1371,2
    308~2309,2312~2313,2333,2355,2
    444,2486,2508,2542,2544,2778~2
    780,3890,4163
    rna:9:1~1869 1563~1565,2884~2885,3629,3695,
    3699,3712,3759,3762~3763,3766~
    3767,3794~3796,3806~3807
    5137 5lzu:7
    (3.75Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 77~80,84,88,98,100~101,103~104
    5138 5lzu:8
    (3.75Å)
    		 151 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B2C76 RF00002 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 3~22,24~37,40~41,53~54,68,103,
    108,110~113,115,124~126,128,13
    6~155
    5139 5lzu:9
    (3.75Å)
    		 1698 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7639A RF01960 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 1058,1248,1524~1525,1639~1641,
    1701
    rna:3:1~76 1641~1642
    rna:5:1~5069 677~678,970,1028~1029,1051,118
    0,1708~1710,1719~1721,1731~173
    2,1815~1816,1826~1827,1849
    rna:hh:41~55 626,961,1207,1331,1698,1701~17
    02,1825,1830
    5140 5lzu:hh
    (3.75Å)
    		 15 N/A N/A N/A Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 46~48
    rna:9:1~1869 43,45~48,50,52~53
    5141 5lzv:2
    (3.35Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS0000868530 RF00005 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 3,12,24~25,74~76
    rna:9:1~1869 30~32,34,38,40~41
    rna:hh:41~55 34~37
    5142 5lzv:3
    (3.35Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000086855F RF00005 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 3~4,70~72,75~76
    rna:9:1~1869 34~35
    5143 5lzv:5
    (3.35Å)
    		 3543 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632C RF02543 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 3769~3770,4196~4198,4201,4396~
    4397,4531,4547~4548
    rna:3:1~76 3714~3716,3738~3740,4341~4342,
    4370~4371
    rna:7:1~120 1736~1739,1741,1792~1796,1909,
    1936,1942
    rna:8:1~156 2~22,58,146,193,339,341~348,35
    0~353,356~357,360,362,379~380,
    415~430,1304~1305,1333~1334,13
    71,2308~2309,2312~2313,2333~23
    34,2355,2444~2445,2472,2486,25
    08,2542,2544,2778~2779,3890~38
    91,4163,4572
    rna:9:1~1869 1563~1565,2884~2885,3629,3695,
    3712,3759~3760,3762~3763,3766~
    3767,3794~3796,3806~3808
    5144 5lzv:7
    (3.35Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 77~80,84,88,98,100~104
    5145 5lzv:8
    (3.35Å)
    		 151 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B2C76 RF00002 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 2~22,24~37,40~41,53,69,103,108
    ,112~113,115,124~126,128,137~1
    55
    5146 5lzv:9
    (3.35Å)
    		 1698 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7639A RF01960 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 1058,1248,1524~1525,1639~1641,
    1701
    rna:3:1~76 1641~1642
    rna:5:1~5069 677~678,970,1028~1030,1180~118
    1,1708~1710,1719~1721,1731~173
    2,1815~1816,1825~1828,1849
    rna:hh:41~55 626,961,1207,1698,1701~1702,18
    25,1830
    5147 5lzv:hh
    (3.35Å)
    		 15 N/A N/A N/A Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 46~48
    rna:9:1~1869 43,45~48,50,52~53
    5148 5lzw:2
    (3.53Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS0000868530 RF00005 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 12,24,74~76
    rna:9:1~1869 30~32,34,38,40~41
    rna:hh:41~48 34~37
    5149 5lzw:3
    (3.53Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000086855F RF00005 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 3~4,70~72,75~76
    rna:9:1~1869 34~35
    5150 5lzw:5
    (3.53Å)
    		 3543 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632C RF02543 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 3770,4196~4198,4396~4397,4531,
    4547~4548
    rna:3:1~76 3714~3715,3738~3740,4341~4342,
    4370~4371
    rna:7:1~120 1736~1739,1741,1792~1796,1894,
    1909,1936,1942
    rna:8:1~156 2~22,58,339,341~348,350~353,35
    5~357,360,362,379~380,415~430,
    1304~1305,1333~1334,1371,2308~
    2309,2312~2313,2333,2355,2444~
    2445,2472,2486,2508,2542,2544,
    2778~2779,3890,4163
    rna:9:1~1869 1563~1565,3629,3695,3699,3712,
    3759~3763,3766~3767,3794~3796,
    3806~3807
    5151 5lzw:7
    (3.53Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 77~80,84,88,97~98,100~104
    5152 5lzw:8
    (3.53Å)
    		 151 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B2C76 RF00002 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 3~22,24~37,40~41,53,103,108,11
    0,112~113,115,124~126,128,136~
    155
    5153 5lzw:9
    (3.53Å)
    		 1698 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7639A RF01960 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 1058,1248,1524~1525,1639~1641,
    1701
    rna:3:1~76 1641~1642
    rna:5:1~5069 677~678,970,1028~1029,1051,118
    0,1708~1710,1719~1721,1731,181
    5~1816,1825~1828,1849
    rna:hh:41~48 1207,1701~1702,1704,1830
    5154 5lzx:2
    (3.67Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS0000868530 RF00005 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 12,74~76
    rna:9:1~1869 30~32,34,38,40~41
    rna:hh:41~48 34~37
    5155 5lzx:3
    (3.67Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000086855F RF00005 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 3~4,70~73,75~76
    rna:9:1~1869 34~35
    5156 5lzx:5
    (3.67Å)
    		 3543 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632C RF02543 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 3770,4196~4198,4396~4397,4531,
    4547~4548
    rna:3:1~76 3714~3715,3738~3740,4180,4341~
    4342,4370~4371
    rna:7:1~120 1736~1739,1741,1792~1796,1894,
    1909,1936,1942
    rna:8:1~156 2~22,58,146,193,339,341~348,35
    0~353,355~357,360,362,379~380,
    415~430,1304~1305,1333~1334,13
    71,2308~2309,2312~2313,2332~23
    34,2355,2444,2472,2486,2508,25
    42,2544,2778~2779,3890,4163
    rna:9:1~1869 1563~1565,2884,3629,3695,3700,
    3712,3759~3760,3762~3763,3766~
    3767,3794~3796,3806~3807
    5157 5lzx:7
    (3.67Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 77~80,84,88,97~98,100~104
    5158 5lzx:8
    (3.67Å)
    		 151 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B2C76 RF00002 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 3~22,24~37,40~41,53~54,103,108
    ,112~113,115,124~126,128,136~1
    55
    5159 5lzx:9
    (3.67Å)
    		 1698 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7639A RF01960 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 1058,1248,1524~1525,1639~1641,
    1701
    rna:3:1~76 1641~1642
    rna:5:1~5069 677~678,970,1028~1029,1052,118
    0,1708~1710,1719~1721,1731,181
    5~1816,1825~1828,1849
    rna:hh:41~48 1207,1701~1702,1830
    5160 5lzy:2
    (3.99Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000086855F RF00005 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 2,11~13,24~25,74~76
    rna:9:1~1869 30~32,34,38~41
    rna:hh:41~48 34~37
    5161 5lzy:3
    (3.99Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000086855F RF00005 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 3~4,70~73,75~76
    rna:9:1~1869 34~35
    5162 5lzy:5
    (3.99Å)
    		 3543 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632C RF02543 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 3754,3756,3769~3771,4196~4198,
    4200,4396~4397,4531,4548
    rna:3:1~76 3714~3716,3738~3740,4180,4341~
    4342,4370~4371
    rna:7:1~120 1736~1738,1741,1792~1796,1894,
    1909,1936,1942
    rna:8:1~156 2~22,58,146,339,342~348,350~35
    3,355~357,360,362,379~380,415~
    430,1304~1305,1333~1334,1371,2
    308~2309,2333,2355,2444,2472,2
    486,2542,2544,2778~2780,3890
    rna:9:1~1869 1563~1565,2884,3629,3695,3699,
    3712,3759~3763,3766~3767,3794~
    3796,3806~3807
    5163 5lzy:7
    (3.99Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 77~80,84,88,98,100~104
    5164 5lzy:8
    (3.99Å)
    		 151 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B2C76 RF00002 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 3~22,24~37,40~41,53~54,103,108
    ,111~113,115,124~126,128,136~1
    49,151~155
    5165 5lzy:9
    (3.99Å)
    		 1698 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7639A RF01960 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 1058,1248,1524~1525,1639~1641,
    1701
    rna:3:1~76 1641~1642
    rna:5:1~5069 677~678,970,1028~1029,1051,118
    0,1708~1710,1719~1721,1731,181
    5~1816,1825~1828,1849
    rna:hh:41~48 961,1207,1701~1702,1704,1830
    5166 5lzz:2
    (3.47Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS0000868530 RF00005 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 12,24,74~76
    rna:9:1~1869 30~32,34,38~41
    rna:hh:41~48 34~37
    5167 5lzz:3
    (3.47Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000086855F RF00005 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 3~4,70~72,75~76
    rna:9:1~1869 34~35
    5168 5lzz:5
    (3.47Å)
    		 3543 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632C RF02543 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 3770,4196~4198,4396~4397,4531,
    4548
    rna:3:1~76 3714~3716,3738~3740,4341~4342,
    4370~4371
    rna:7:1~120 1736~1739,1741,1792~1796,1894,
    1909,1936,1942
    rna:8:1~156 2~22,58,339,341~348,350~353,35
    5~357,360,362,379~380,415~430,
    1304~1305,1333~1334,1371,2308~
    2309,2312~2313,2332~2333,2355,
    2444,2472,2486,2509,2542,2544,
    2778~2780,3890
    rna:9:1~1869 1563~1565,2884,3629,3699~3700,
    3712,3759~3760,3762~3763,3766~
    3767,3794~3796,3806~3807
    5169 5lzz:7
    (3.47Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 77~80,84,88,97~98,100~104
    5170 5lzz:8
    (3.47Å)
    		 151 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B2C76 RF00002 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:5:1~5069 3~22,24~37,40~41,53~54,103,108
    ,111~113,115,124~126,128,136~1
    55
    5171 5lzz:9
    (3.47Å)
    		 1698 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7639A RF01960 Oryctolagus
    cuniculus
    9986    		 27863242 Assembly1
    rna:2:1~76 1058,1248,1524~1525,1639~1641,
    1701
    rna:3:1~76 1641~1642
    rna:5:1~5069 677~678,970,1028~1029,1051~105
    2,1180,1708~1710,1719~1721,173
    1,1815~1816,1825~1828,1849
    rna:hh:41~48 961,1207,1701~1702,1830
    5172 5m1j:14
    (3.3Å)
    		 3295 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    4932    		 27995908
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:22:1~1798 846,848,1935~1936,2125,2190~21
    91,2195~2196,2205,2208,2255~22
    59,2262~2263,2290~2292,2302~23
    03,2330
    rna:34:1~121 996~998,1052~1056,1156,1170~11
    71,1197,1203
    rna:44:1~158 3~23,59,330~337,339~342,345~34
    6,349,351,368~369,404~419,656~
    657,691,1394~1395,1398~1399,14
    19~1420,1441,1530,1584~1585,16
    18,1830~1832,2386,2585,2994~29
    95
    rna:A3:1~76 2250~2251,2265~2267,2619~2621,
    2819~2820,2971
    5173 5m1j:22
    (3.3Å)
    		 1781 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E2D9 RF01960 Saccharomyces
    cerevisiae
    4932    		 27995908
    101

    441

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:14:3~3396 628~629,913,971~972,995,1123,1
    644~1647,1655~1657,1667,1746~1
    747,1757~1759,1780
    rna:X7:7~18 904,1150,1638,1640,1761
    rna:A3:1~76 1001,1191,1462,1575~1577,1637
    5174 5m1j:34
    (3.3Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 27995908 Assembly1
    rna:14:3~3396 79~82,86,90,100,102~103
    5175 5m1j:44
    (3.3Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 27995908
    441    		 Assembly1
    rna:14:3~3396 1~22,24~33,35~37,40~41,53~54,1
    04,109,112~115,126,129,137~140
    ,142~157
    5176 5m1j:A3
    (3.3Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 27995908 Assembly1
    rna:22:1~1798 30~32,34,38,40~41
    rna:14:3~3396 12~13,25,74~76
    rna:X7:7~18 34~37
    5177 5m1j:X7
    (3.3Å)
    		 12 N/A N/A N/A synthetic
    construct
    32630    		 27995908 Assembly1
    rna:22:1~1798 12~13,15~18
    rna:A3:1~76 14,16~18
    5178 5m3h:R
    (2.5Å)
    		 13 N/A URS000080E01C N/A Influenza
    A
    virus
    11320    		 28002402 Assembly1
    rna:V:1~16 5~10
    5179 5m3h:V
    (2.5Å)
    		 16 N/A URS000080DFE6 N/A Influenza
    A
    virus
    11320    		 28002402 Assembly1
    rna:R:1~13 11~15
    5180 5m3j:R
    (3.5Å)
    		 14 N/A URS0000B21E03 N/A Influenza
    B
    virus
    11520    		 28002402 Assembly1
    rna:V:1~14 4,6~9
    5181 5m3j:V
    (3.5Å)
    		 14 N/A URS000080E200 N/A Influenza
    B
    virus
    11520    		 28002402 Assembly1
    rna:R:1~14 11~14
    5182 5mc6:2
    (3.8Å)
    		 1767 GO:0003735 (F) structural constituent ...
    GO:0061770 (F) translation elongation ...
    GO:0001731 (P) formation of translatio...
    GO:0002181 (P) cytoplasmic translation
    GO:0002188 (P) translation reinitiation
    GO:0006414 (P) translational elongation
    GO:0005840 (C) ribosome
    GO:0022627 (C) cytosolic small ribosom...    		 URS00005F2C2D RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 27980209 Assembly1
    rna:l:34~67 11,577,904,1150,1634,1637~1638
    ,1640,1756,1761
    rna:m:1~76 577,1274,1756
    rna:n:1~76 1001,1191,1462~1463,1576~1578,
    1637
    rna:BQ:3~3396 628~629,913,971~973,1644~1646,
    1655~1657,1667,1746~1747,1757~
    1759,1780
    5183 5mc6:BQ
    (3.8Å)
    		 3165 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 27980209 Assembly1
    rna:2:1~1798 846~848,1935,2125,2206~2207,22
    55~2259,2262~2263,2290~2292,23
    02~2304,2330
    rna:m:1~76 2256,2838~2839,2851~2852,2862,
    2876,2922~2924,2952~2954,2971
    rna:n:1~76 2250~2252,2265~2267,2619~2621,
    2819~2820,2971
    rna:BR:1~121 996~998,1052,1054~1056,1156,11
    71,1197,1203
    rna:BS:1~158 3~23,59,330~337,339~342,345~34
    6,349,351,368~369,404~419,656~
    657,691,1394~1395,1398~1399,14
    19,1441,1530,1618~1619,1830~18
    32,2386,2585,2994~2995
    5184 5mc6:BR
    (3.8Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 27980209 Assembly1
    rna:BQ:3~3396 79~82,86,90,100,102~103
    5185 5mc6:BS
    (3.8Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 27980209 Assembly1
    rna:BQ:3~3396 1~22,24~37,40,53~54,104,109,11
    3~115,125~126,129,137~152,154~
    157
    5186 5mc6:l
    (3.8Å)
    		 34 N/A N/A N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 27980209 Assembly1
    rna:2:1~1798 42~43,45~53
    rna:m:1~76 49~51
    rna:n:1~76 46~48
    5187 5mc6:m
    (3.8Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000042DDAB RF00005 Saccharomyces
    cerevisiae
    S288C
    559292    		 27980209 Assembly1
    rna:2:1~1798 34~37
    rna:l:34~67 34~37
    rna:BQ:3~3396 37~38,52,63~64,74~76
    5188 5mc6:n
    (3.8Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000009EE82 RF00005 Saccharomyces
    cerevisiae
    S288C
    559292    		 27980209 Assembly1
    rna:2:1~1798 30~32,34,38~40
    rna:l:34~67 34~37
    rna:BQ:3~3396 11~13,24~25,74~76
    5189 5mdv:1
    (2.97Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000B21DEA RF02541 Escherichia
    coli
    562    		 27934701 Assembly1
    rna:2:1~1534 1700~1704,1832,1836~1837,1846,
    1848,1895,1912~1913,1915~1916,
    1919~1920,1947~1949,1959~1961
    rna:3:1~120 861~864,915,917~919,958,2340
    rna:5:1~76 1907~1909,1922~1924,2251~2253,
    2255,2450~2451,2601~2602
    5190 5mdv:2
    (2.97Å)
    		 1534 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177 Escherichia
    coli
    562    		 27934701 Assembly1
    rna:1:1~2903 702,783~784,899,1407~1409,1418
    ,1429,1473~1475,1483~1484,1492
    ,1494~1496,1517
    rna:4:14~18 926,1400~1402,1498
    rna:5:1~76 790,966,1229,1338~1340,1400
    5191 5mdv:3
    (2.97Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 27934701 Assembly1
    rna:1:1~2903 41,78~81,89~90,96~97,99~100
    5192 5mdv:5
    (2.97Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000B21DD1 RF00005 Escherichia
    coli
    562    		 27934701 Assembly1
    rna:1:1~2903 10~12,24~25,74~76
    rna:2:1~1534 30~32,34,38~41
    rna:4:14~18 34~37
    5193 5mdw:1
    (3.06Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000B21DEA RF02541 Escherichia
    coli
    562    		 27934701 Assembly1
    rna:2:1~1534 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1948,1959~1961
    rna:3:1~120 861~864,915,917~919,958,2340
    rna:5:1~76 1907~1909,1922~1924,2064,2251~
    2253,2255,2450~2451,2602
    5194 5mdw:2
    (3.06Å)
    		 1534 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177 Escherichia
    coli
    562    		 27934701 Assembly1
    rna:1:1~2903 702,784,899,1407~1409,1418,142
    9,1473~1475,1483~1484,1492,149
    4~1496,1517
    rna:4:14~18 926,1400~1403,1498
    rna:5:1~76 790,966,1229,1338~1341,1400
    5195 5mdw:3
    (3.06Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 27934701 Assembly1
    rna:1:1~2903 41,78~81,89,96~97,99~100
    5196 5mdw:5
    (3.06Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000B21DD1 RF00005 Escherichia
    coli
    562    		 27934701 Assembly1
    rna:1:1~2903 10~12,24~25,74~76
    rna:2:1~1534 30~32,34,38,40~41
    rna:4:14~18 34~37
    5197 5mdy:1
    (3.35Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000B21DEA RF02541 Escherichia
    coli
    K-12
    83333    		 27934701 Assembly1
    rna:2:1~1534 1689,1700~1703,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1948,1959~1960
    rna:3:1~120 861~864,915,917~919,958
    rna:5:1~76 1907~1909,1923~1924,2064,2251~
    2253,2255,2450~2451,2602
    5198 5mdy:2
    (3.35Å)
    		 1534 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177 Escherichia
    coli
    K-12
    83333    		 27934701 Assembly1
    rna:1:1~2903 702,784,899,1407~1409,1418,142
    9,1473~1475,1483~1484,1492,149
    4~1496,1517
    rna:4:14~18 926,1400~1403,1498
    rna:5:1~76 790,966,1229,1338~1340,1400
    5199 5mdy:3
    (3.35Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    K-12
    83333    		 27934701 Assembly1
    rna:1:1~2903 78~81,89,96~97,99~100
    5200 5mdy:5
    (3.35Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000B21DD1 RF00005 Escherichia
    coli
    562    		 27934701 Assembly1
    rna:1:1~2903 10~12,24~25,74~76
    rna:2:1~1534 30~32,34,38,40~41
    rna:4:14~18 34~37
    << < 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.