SEQ2FUN

FURNA
Download all results in tab-seperated text for 14210 RNAs.
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    # PDB
    (Resolution)
    Length EC number
    & GO term
    RNAcentral Rfam Taxon PubMed ATtRACT
    motif
    Ligand &
    binding nucleotides
    5701 5wfk:v
    (3.4Å)

    77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00001BBAFC RF00005 Escherichia
    coli

    562
    29733411 Assembly1
    rna:A:1~2903 10~12,24~25,74~76
    rna:a:1~1540 30~32,34,38,40~41
    rna:x:13~24 34~37
    5702 5wfk:w
    (3.4Å)

    77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00001BBAFC RF00005 Escherichia
    coli

    562
    29733411 Assembly1
    rna:A:1~2903 117,70~71,75~76
    rna:a:1~1540 34,37~38
    5703 5wfk:x
    (3.4Å)

    12 N/A N/A N/A Escherichia
    coli
    K-12

    83333
    29733411 Assembly1
    rna:a:1~1540 13,15~18,20,22~24
    rna:v:0~76 16~18
    rna:y:1~76 19~20
    5704 5wfk:y
    (3.4Å)

    76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00005AA258 RF00005 Escherichia
    coli

    562
    29733411 Assembly1
    rna:x:13~24 34~35,37
    5705 5wfs:A
    (3.0Å)

    2900 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00021ED92F RF02540
    RF02541
    Escherichia
    coli

    562
    29733411 Assembly1
    rna:B:1~120 861~864,916~919,958
    rna:a:1~1540 1689,1700~1704,1832,1837,1848,
    1912~1913,1915~1916,1919~1920,
    1947~1948,1959~1961

    rna:v:0~76 1907~1909,1922~1924,2063~2064,
    2251~2253,2450~2451,2602

    rna:w:1~76 1851~1852,2121,2168,2180~2181,
    2394~2395,2421~2422,2432

    rna:y:1~76 1067,1913~1914
    5706 5wfs:B
    (3.0Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00008116C5 RF00001 Escherichia
    coli

    562
    29733411 Assembly1
    rna:A:1~2903 78~81,89,96~97,99~100
    5707 5wfs:a
    (3.0Å)

    1540 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000D56C37 RF00177
    RF01959
    RF01960
    Escherichia
    coli

    562
    29733411 Assembly1
    rna:A:1~2903 702,784,899,1407~1409,1418,142
    9,1473~1475,1483~1484,1493~149
    6,1517

    rna:v:0~76 790,966,1229~1230,1338~1340,14
    00

    rna:w:1~76 694,936~937,1383
    rna:x:13~24 693,788~789,926,1397,1400~1402
    ,1492~1493,1498,1505~1506

    rna:y:1~76 530,1054,1493
    5708 5wfs:v
    (3.0Å)

    77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00001BBAFC RF00005 Escherichia
    coli

    562
    29733411 Assembly1
    rna:A:1~2903 10~12,24~25,74~76
    rna:a:1~1540 30~32,34,38~41
    rna:x:13~24 34~37
    5709 5wfs:w
    (3.0Å)

    77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00001BBAFC RF00005 Escherichia
    coli

    562
    29733411 Assembly1
    rna:A:1~2903 117,56,70~72,76
    rna:a:1~1540 34,38
    5710 5wfs:x
    (3.0Å)

    12 N/A N/A N/A Escherichia
    coli

    562
    29733411 Assembly1
    rna:a:1~1540 13~20,22~23
    rna:v:0~76 16~18
    rna:y:1~76 19~22
    5711 5wfs:y
    (3.0Å)

    76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00005AA258 RF00005 Escherichia
    coli

    562
    29733411 Assembly1
    rna:A:1~2903 25~26,37~38,56
    rna:a:1~1540 34~37
    rna:x:13~24 34~37
    5712 5wis:1A
    (2.703Å)

    2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00001698E8 RF02540
    RF02541
    RF00002
    Thermus
    thermophilus
    HB8

    300852
    28934499 Assembly1
    rna:1B:1~120 908~911,961,963~965,1003
    rna:1a:4~1533 1736,1747~1751,1863,1867~1868,
    1877,1879,1934~1935,1937~1938,
    1941~1942,1969~1971,1981~1983,
    2873~2874

    rna:1w:1~76 928~929,943,1935,2494~2495,251
    8~2520,2565,2567,2585,2595~259
    7,2614

    rna:1x:2~76 1930~1931,1944~1946,2263~2265,
    2451,2462~2463,2613~2614

    rna:1y:1~76 1882,2134,2191,2406~2407,2433~
    2434
    5713 5wis:1B
    (2.703Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8

    300852
    28934499 Assembly1
    rna:1A:6~2906 78~81,90,97~98,100~101
    5714 5wis:1a
    (2.703Å)

    1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DFED RF00177
    RF01959
    RF01960
    Thermus
    thermophilus
    HB8

    300852
    28934499 Assembly1
    rna:1A:6~2906 702,783~784,899,1407~1409,1418
    ,1429~1430,1442A,1473~1475,148
    3~1484,1494~1496,1517

    rna:1v:12~24 530,926,1196,1397,1400~1402,14
    92~1493,1498,1503,1505,1507

    rna:1w:1~76 530,1054,1493
    rna:1x:2~76 790,966,1229~1230,1338~1340,14
    00
    5715 5wis:1v
    (2.703Å)

    13 N/A N/A N/A Tequatrovirus
    T4

    10665
    28934499 Assembly1
    rna:1a:4~1533 12~13,15~24
    rna:1w:1~76 19~21
    rna:1x:2~76 16~18
    5716 5wis:1w
    (2.703Å)

    74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00005AA258 RF00005 Escherichia
    coli

    562
    28934499 Assembly1
    rna:1A:6~2906 19,37~38,56,64,74~76
    rna:1a:4~1533 34~37
    rna:1v:12~24 34~37
    5717 5wis:1x
    (2.703Å)

    76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS000041AF00 RF00005 Escherichia
    coli

    562
    28934499 Assembly1
    rna:1A:6~2906 11~13,24~25,74~76
    rna:1a:4~1533 29~32,34,38~41
    rna:1v:12~24 34~37
    5718 5wis:1y
    (2.703Å)

    74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00005AA258 RF00005 Escherichia
    coli

    562
    28934499 Assembly1
    rna:1A:6~2906 19,56,71~72,76
    rna:1x:2~76 35~36
    5719 5wis:2A
    (2.703Å)

    2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00001698E8 RF02540
    RF02541
    RF00002
    Thermus
    thermophilus
    HB8

    300852
    28934499 Assembly2
    rna:2B:1~120 861~864,915~918,958
    rna:2a:4~1532 1700~1704,1832,1836~1837,1846,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1948,1959~1961,2864

    rna:2w:2~76 882,896~897,1913,2482~2483,250
    6~2507,2553~2555,2583~2585,260
    2

    rna:2x:2~76 1907~1909,1922~1924,2251~2253,
    2439,2450~2451,2601~2602

    rna:2y:1~76 1851~1852,2112,2169,2394~2395,
    2421~2422,2432
    5720 5wis:2B
    (2.703Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8

    300852
    28934499 Assembly2
    rna:2A:6~2897 78~80,90,97~98,100~102
    5721 5wis:2a
    (2.703Å)

    1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DFED RF00177
    RF01959
    RF01960
    Thermus
    thermophilus
    HB8

    300852
    28934499 Assembly2
    rna:2A:6~2897 702,783~784,899,1407~1409,1418
    ,1429~1430,1442A,1473~1475,148
    3~1484,1493~1496,1517

    rna:2v:12~24 530,926,1196,1397,1400~1402,14
    92~1493,1498,1503,1505,1507

    rna:2w:2~76 530,1054,1493
    rna:2x:2~76 790,966,1229~1230,1338~1340,14
    00
    5722 5wis:2v
    (2.703Å)

    13 N/A N/A N/A Tequatrovirus
    T4

    10665
    28934499 Assembly2
    rna:2a:4~1532 12~13,15~24
    rna:2w:2~76 19~21
    rna:2x:2~76 16~18
    5723 5wis:2w
    (2.703Å)

    72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00005AA258 RF00005 Escherichia
    coli

    562
    28934499 Assembly2
    rna:2A:6~2897 19,37~38,55~56,64,74~76
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    5724 5wis:2x
    (2.703Å)

    76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS000041AF00 RF00005 Escherichia
    coli

    562
    28934499 Assembly2
    rna:2A:6~2897 11~13,24~25,74~76
    rna:2a:4~1532 30~32,34,38,40~41
    rna:2v:12~24 34~37
    5725 5wis:2y
    (2.703Å)

    73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00005AA258 RF00005 Escherichia
    coli

    562
    28934499 Assembly2
    rna:2A:6~2897 19,56,71~72,76
    rna:2x:2~76 35~36
    5726 5wit:1A
    (2.6Å)

    2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00001698E8 RF02540
    RF02541
    RF00002
    Thermus
    thermophilus
    HB8

    300852
    28934499 Assembly1
    rna:1B:1~120 908~910,961~965,1003
    rna:1a:4~1533 1747~1751,1867~1868,1877,1879,
    1934~1935,1937~1938,1941~1942,
    1969~1971,1981~1983,2873~2874

    rna:1w:1~76 929,942~943,1935,2463~2464,249
    4~2495,2518~2519,2565~2567,258
    5,2595~2597,2614

    rna:1x:2~76 1929~1931,1944~1946,2263~2264,
    2451,2462~2463,2613~2614

    rna:1y:1~76 1882,2134,2191,2406~2407,2433~
    2434,2444
    5727 5wit:1B
    (2.6Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8

    300852
    28934499 Assembly1
    rna:1A:6~2906 78~81,90,97~98,100~101
    5728 5wit:1a
    (2.6Å)

    1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DFED RF00177
    RF01959
    RF01960
    Thermus
    thermophilus
    HB8

    300852
    28934499 Assembly1
    rna:1A:6~2906 702,783~784,899,1407~1409,1418
    ,1429,1442A,1473~1475,1483~148
    4,1494~1496,1517

    rna:1v:12~24 530,926,1196,1397,1400~1402,14
    92~1493,1498,1503,1505,1507

    rna:1w:1~76 530~531,1054,1493
    rna:1x:2~76 790,966,1229~1230,1338~1340,14
    00
    5729 5wit:1v
    (2.6Å)

    13 N/A N/A N/A Tequatrovirus
    T4

    10665
    28934499 Assembly1
    rna:1a:4~1533 12~13,15~24
    rna:1w:1~76 19~21
    rna:1x:2~76 16~18
    5730 5wit:1w
    (2.6Å)

    74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00005AA258 RF00005 Escherichia
    coli

    562
    28934499 Assembly1
    rna:1A:6~2906 19,37~38,55~56,64,74~76
    rna:1a:4~1533 34~37
    rna:1v:12~24 34~37
    5731 5wit:1x
    (2.6Å)

    76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS000041AF00 RF00005 Escherichia
    coli

    562
    28934499 Assembly1
    rna:1A:6~2906 11~13,24~25,74~76
    rna:1a:4~1533 30~32,34,38~41
    rna:1v:12~24 34~37
    rna:1y:1~76 39~40
    5732 5wit:1y
    (2.6Å)

    74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00005AA258 RF00005 Escherichia
    coli

    562
    28934499 Assembly1
    rna:1A:6~2906 19,56,76
    rna:1a:4~1533 35,38
    5733 5wit:2A
    (2.6Å)

    2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00001698E8 RF02540
    RF02541
    RF00002
    Thermus
    thermophilus
    HB8

    300852
    28934499 Assembly2
    rna:2B:1~120 861~863,915~918,958
    rna:2a:4~1532 1700~1704,1832,1836~1837,1846,
    1848,1912~1916,1919~1920,1947~
    1948,1959~1961,2863~2864

    rna:2w:2~76 881~882,896~897,1913,2451~2452
    ,2482~2483,2506~2507,2553~2555
    ,2573,2583~2585,2602

    rna:2x:2~76 1907~1909,1922~1924,2251~2253,
    2439,2450~2451,2601~2602

    rna:2y:1~76 1851~1852,1885,2112,2169,2394~
    2395,2421~2422,2432
    5734 5wit:2B
    (2.6Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8

    300852
    28934499 Assembly2
    rna:2A:6~2897 78~80,90,97~98,100~101
    5735 5wit:2a
    (2.6Å)

    1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DFED RF00177
    RF01959
    RF01960
    Thermus
    thermophilus
    HB8

    300852
    28934499 Assembly2
    rna:2A:6~2897 702,783~784,899,1407~1409,1418
    ,1429,1442A,1473~1475,1483~148
    4,1494~1496,1517

    rna:2v:12~24 530,926,1196,1397,1400~1402,14
    92~1493,1498,1503,1505~1507

    rna:2w:2~76 530,1054,1493
    rna:2x:2~76 790,966,1229,1338~1340,1400
    rna:2y:1~76 693~695
    5736 5wit:2v
    (2.6Å)

    13 N/A N/A N/A Tequatrovirus
    T4

    10665
    28934499 Assembly2
    rna:2a:4~1532 13,15~24
    rna:2w:2~76 19~21
    rna:2x:2~76 16~18
    5737 5wit:2w
    (2.6Å)

    72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00005AA258 RF00005 Escherichia
    coli

    562
    28934499 Assembly2
    rna:2A:6~2897 19,37~38,55~56,64,74~76
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    5738 5wit:2x
    (2.6Å)

    76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS000041AF00 RF00005 Escherichia
    coli

    562
    28934499 Assembly2
    rna:2A:6~2897 11~13,24~25,74~76
    rna:2a:4~1532 30~32,34,38~41
    rna:2v:12~24 34~37
    5739 5wit:2y
    (2.6Å)

    73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00005AA258 RF00005 Escherichia
    coli

    562
    28934499 Assembly2
    rna:2A:6~2897 19,56,71~72,76
    rna:2a:4~1532 37~38
    5740 5wlc:L0
    (3.8Å)

    488 N/A URS000007769E N/A Saccharomyces
    cerevisiae
    BY4741

    1247190
    28945246 Assembly1
    rna:L2:1~333 281~292,462~467,470~479
    5741 5wlc:L1
    (3.8Å)

    1025 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000BC4691 RF01960
    RF01959
    RF00177
    Saccharomyces
    cerevisiae
    BY4741

    1247190
    28945246 Assembly1
    rna:L2:1~333 5,7~17,1111~1117,1119~1124
    5742 5wlc:L2
    (3.8Å)

    169 GO:0006396 (P) RNA processing
    GO:0005730 (C) nucleolus
    URS0000B21E09 RF01846 Saccharomyces
    cerevisiae
    BY4741

    1247190
    28945246 Assembly1
    rna:L0:15~592 39~48,50~55,62~73
    rna:L1:-6~1791 1,3~13,15~22,25~28
    5743 5wnp:A
    (3.3Å)

    1512 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DE21 RF00177
    RF01959
    RF01960
    Thermus
    thermophilus
    HB8

    300852
    29459784 Assembly1
    rna:a:1~6 530,1196,1397,1492~1493,1544
    rna:b:28~42 530~531,1054,1493
    5744 5wnp:b
    (3.3Å)

    15 N/A URS0000CBFF57 N/A Thermus
    thermophilus
    HB8

    300852
    29459784 Assembly1
    rna:A:5~1544 34~37
    rna:a:1~6 34~37
    5745 5wnt:A
    (3.3Å)

    1512 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DE21 RF00177
    RF01959
    RF01960
    Thermus
    thermophilus
    HB8

    300852
    29459784 Assembly1
    rna:a:1~5 530,1397,1492~1493,1544
    rna:b:28~42 530~531,1054,1493
    5746 5wnt:b
    (3.3Å)

    15 N/A URS0000CBFF57 N/A Thermus
    thermophilus
    HB8

    300852
    29459784 Assembly1
    rna:A:5~1544 34~37
    rna:a:1~5 34~37
    5747 5wnu:A
    (3.4Å)

    1512 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DE21 RF00177
    RF01959
    RF01960
    Thermus
    thermophilus
    HB8

    300852
    29459784 Assembly1
    rna:a:1~3 530,1492~1493,1544
    rna:b:33~38 530,1054,1493
    5748 5wnv:A
    (3.3Å)

    1512 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000080DE21 RF00177
    RF01959
    RF01960
    Thermus
    thermophilus
    HB8

    300852
    29459784 Assembly1
    rna:a:1~6 530,1196,1397,1492~1493
    rna:b:28~42 530~531,1054,1493
    5749 5wnv:b
    (3.3Å)

    15 N/A URS0000CBFF57 N/A Thermus
    thermophilus
    HB8

    300852
    29459784 Assembly1
    rna:A:5~1544 34~37
    rna:a:1~6 34~37
    5750 5wsg:B
    (4.0Å)

    13 N/A URS0000A763A3 N/A Saccharomyces
    cerevisiae
    S288C

    559292
    27980089 Assembly1
    rna:D:28~183 97~99
    5751 5wsg:D
    (4.0Å)

    117 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS000053F313 RF00020 Saccharomyces
    cerevisiae
    S288C

    559292
    27980089 Assembly1
    rna:B:87~99 96~99
    rna:E:1~103 98~99
    5752 5wsg:E
    (4.0Å)

    103 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS00006184A9 RF00026 Saccharomyces
    cerevisiae
    S288C

    559292
    27980089 Assembly1
    rna:N:100~114 45~51,79
    rna:D:28~183 72~73,75
    rna:L:1~1120 53,55~62,88~89,92~103
    rna:b:-5~8 59~60
    5753 5wsg:L
    (4.0Å)

    91 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP
    URS000023C730 RF00004 Saccharomyces
    cerevisiae
    S288C

    559292
    27980089 Assembly1
    rna:E:1~103 1~13,17,21~23,26~29
    rna:M:482~504 32~35,37~47
    5754 5wsg:M
    (4.0Å)

    23 N/A URS0000B21DCC N/A Saccharomyces
    cerevisiae
    S288C

    559292
    27980089 Assembly1
    rna:L:1~1120 487~495,497~498,500,502~504
    5755 5wsg:N
    (4.0Å)

    15 N/A URS0000A7639B N/A Saccharomyces
    cerevisiae
    S288C

    559292
    27980089 Assembly1
    rna:E:1~103 101~107
    rna:M:482~504 100~101
    5756 5wsg:b
    (4.0Å)

    14 N/A URS0000B21DD2 N/A Saccharomyces
    cerevisiae
    S288C

    559292
    27980089 Assembly1
    rna:B:87~99 1~2
    rna:N:100~114 -1~0
    rna:E:1~103 0~1
    5757 5wyj:3A
    (8.7Å)

    157 GO:0006396 (P) RNA processing
    GO:0005730 (C) nucleolus
    URS0000B21E09 RF01846 Saccharomyces
    cerevisiae
    S288C

    559292
    28244370 Assembly1
    rna:5A:7~591 39~54,60,62~72
    rna:SA:7~1812 1~14,16~22
    5758 5wyj:5A
    (8.7Å)

    462 N/A URS000007769E N/A Saccharomyces
    cerevisiae
    S288C

    559292
    28244370 Assembly1
    rna:3A:1~333 281~291,294,465~479
    5759 5wyj:SA
    (8.7Å)

    1115 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000B21DE0 RF01960
    RF01959
    RF00177
    Saccharomyces
    cerevisiae
    S288C

    559292
    28244370 Assembly1
    rna:3A:1~333 9~17,1112~1124
    5760 5wyk:3A
    (4.5Å)

    157 GO:0006396 (P) RNA processing
    GO:0005730 (C) nucleolus
    URS0000B21E09 RF01846 Saccharomyces
    cerevisiae
    S288C

    559292
    28244370 Assembly1
    rna:5A:7~591 39~54,60,62~64,66~73
    rna:SA:7~1812 1~14,16~22
    5761 5wyk:5A
    (4.5Å)

    462 N/A URS000007769E N/A Saccharomyces
    cerevisiae
    S288C

    559292
    28244370 Assembly1
    rna:3A:1~333 281~292,294,465~468,470~480
    5762 5wyk:SA
    (4.5Å)

    1000 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000B21DE0 RF01960
    RF01959
    RF00177
    Saccharomyces
    cerevisiae
    S288C

    559292
    28244370 Assembly1
    rna:3A:1~333 9~17,1111~1124
    5763 5x8p:A
    (3.4Å)

    2809 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000028B73E RF02540
    RF02541
    Spinacia
    oleracea

    3562
    28582576 Assembly1
    rna:B:3~119 871~873,924,926~927,986,1055~1
    056

    rna:W:5~106 2~9,1689~1690,1744~1746,1760~1
    762,2020~2021,2061~2062,2639~2
    640,2647~2649,2707~2710,2722,2
    736~2739,2805~2808

    rna:a:3~1488 1739,1847,1857~1858,1926~1930,
    1933~1934,1961~1962,1973~1974
    5764 5x8p:B
    (3.4Å)

    117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000538405 RF00001 Spinacia
    oleracea

    3562
    28582576 Assembly1
    rna:A:2~2810 79~81,89,91,99,101~103
    5765 5x8p:W
    (3.4Å)

    102 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000000A081 RF02541 Spinacia
    oleracea

    3562
    28582576 Assembly1
    rna:A:2~2810 5~7,18~22,49~51,56,62~66,73~75
    ,77,97~105
    5766 5x8p:a
    (3.4Å)

    1480 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00003B54E2 RF00177
    RF01959
    RF01960
    Spinacia
    oleracea

    3562
    28582576 Assembly1
    rna:A:2~2810 650,732,1356~1358,1367,1378,14
    32~1433,1442~1445,1466
    5767 5x8t:A
    (3.3Å)

    2809 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000028B73E RF02540
    RF02541
    Spinacia
    oleracea

    3562
    28582576 Assembly1
    rna:B:3~119 871~873,924,926~927,986,1055~1
    056

    rna:W:5~106 2~9,1689~1690,1744~1746,1760~1
    762,2020~2021,2061~2062,2639~2
    640,2647~2649,2707~2710,2722,2
    736~2739,2805~2808
    5768 5x8t:B
    (3.3Å)

    117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000538405 RF00001 Spinacia
    oleracea

    3562
    28582576 Assembly1
    rna:A:2~2810 79~81,89,91,99,101~103
    5769 5x8t:W
    (3.3Å)

    102 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000000A081 RF02541 Spinacia
    oleracea

    3562
    28582576 Assembly1
    rna:A:2~2810 5~7,18~22,49~51,56,62~66,73~75
    ,77,97~105
    5770 5xjc:B
    (3.6Å)

    84 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS000075BAAE RF00020 Homo
    sapiens

    9606
    28502770
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390
    Assembly1
    rna:F:1~97 42~43
    rna:G:-23~150 40~44
    5771 5xjc:F
    (3.6Å)

    97 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS00001EC8D7 RF00026 Homo
    sapiens

    9606
    28502770
    1334

    1124

    s59

    M021_0.6
    Assembly1
    rna:B:8~104 67,69~70
    rna:G:-23~150 29~30,32~33,36,38~45,71~73
    rna:H:1~184 47,49~56,80,82~83,87~95,97
    5772 5xjc:G
    (3.6Å)

    84 N/A N/A N/A Human
    adenovirus
    2

    10515
    28502770 Assembly1
    rna:B:8~104 -5~-3,-1
    rna:F:1~97 -2~-1,2~10,13~14,16
    rna:H:1~184 132~133,135,138~142,145~147
    5773 5xjc:H
    (3.6Å)

    140 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP
    URS00003EE995 RF00004 Homo
    sapiens

    9606
    28502770
    1212

    1340

    1110

    1373

    M068_0.6

    504
    Assembly1
    rna:F:1~97 1,3~12,16~17,19~22,25~28
    rna:G:-23~150 31~33,35~39,42,44~46
    5774 5xwg:A
    (3.002Å)

    15 N/A URS0000BC468B N/A synthetic
    construct

    32630
    28898762 Assembly1
    rna:A-2:5~19 6~18
    5775 5xwp:C
    (3.086Å)

    58 N/A URS0000BC469D N/A synthetic
    construct

    32630
    28757251 Assembly1
    rna:D:1~30 31~58
    5776 5xwp:D
    (3.086Å)

    30 N/A URS0000BC467E N/A synthetic
    construct

    32630
    28757251 Assembly1
    rna:C:1~58 2~29
    5777 5xwp:E
    (3.086Å)

    58 N/A URS0000BC469D N/A synthetic
    construct

    32630
    28757251 Assembly2
    rna:F:1~29 31~58
    5778 5xwp:F
    (3.086Å)

    29 N/A URS0000BC467E N/A synthetic
    construct

    32630
    28757251 Assembly2
    rna:E:1~58 2~28
    5779 5xxb:1
    (3.17Å)

    3077 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000BC46A5 RF02540
    RF02543
    Toxoplasma
    gondii

    5811
    28809395 Assembly1
    rna:3:1~122 1085~1087,1090,1141,1143~1145,
    1243,1258,1284,1289~1290

    rna:4:1~158 4~23,59,185~186,338~345,347~35
    0,353~354,357,359,376~377,411~
    426,743~744,778,1491~1492,1516
    ~1517,1538,1588,1627,1678~1679
    ,1712~1714,1933~1935,2499,2696
    ,3105~3106
    5780 5xxb:3
    (3.17Å)

    118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000022106C RF00001 Toxoplasma
    gondii

    5811
    28809395 Assembly1
    rna:1:4~3477 77~80,84,88,98~101,103~104
    5781 5xxb:4
    (3.17Å)

    157 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00001D5B7A RF00002 Toxoplasma
    gondii

    5811
    28809395 Assembly1
    rna:1:4~3477 1~22,24~37,40~41,53~54,93,104,
    109~111,113~115,126~127,137~15
    8
    5782 5xy3:1
    (3.2Å)

    2544 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000029F830 RF02540
    RF02543
    Trichomonas
    vaginalis

    5722
    28809395 Assembly1
    rna:3:1~117 722~725,778~782,880,895,920,92
    6

    rna:4:1~160 2~21,57,132,303~306,308~310,31
    2~315,318~319,322,324,341~342,
    377~381,383~392,431~432,466,11
    08~1109,1112,1132,1154,1243~12
    44,1262,1496~1497,1904,2449~24
    51,2596
    5783 5xy3:3
    (3.2Å)

    117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00000C225A RF00001 Trichomonas
    vaginalis

    5722
    28809395 Assembly1
    rna:1:2~2755 77~80,84,88,98,100~102
    5784 5xy3:4
    (3.2Å)

    154 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000527ECE RF00002 Trichomonas
    vaginalis

    5722
    28809395 Assembly1
    rna:1:2~2755 1~3,5~14,16~23,25~38,41~42,53~
    54,103,105,108,112~113,141~153
    ,155~160
    5785 5xym:A
    (3.08Å)

    2665 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00003A7753 RF02540
    RF02541
    Mycolicibacterium
    smegmatis
    MC2
    155

    246196
    28875450 Assembly1
    rna:B:2~117 979~981,1033~1036
    5786 5xym:B
    (3.08Å)

    116 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000047BBB1 RF00001 Mycolicibacterium
    smegmatis
    MC2
    155

    246196
    28875450 Assembly1
    rna:A:6~3115 12,79~81,95,97~98
    5787 5xz1:A
    (3.008Å)

    22 N/A URS0000D77917 N/A synthetic
    construct

    32630
    N/A Assembly1
    rna:B:25~46 3~16,19~23
    5788 5xz1:B
    (3.008Å)

    22 N/A URS0000D77917 N/A synthetic
    construct

    32630
    N/A Assembly1
    rna:A:2~23 26~39,42~46
    5789 5xz1:C
    (3.008Å)

    22 N/A URS0000D77917 N/A synthetic
    construct

    32630
    N/A Assembly2
    rna:D:71~92 48~62,65~69
    5790 5xz1:D
    (3.008Å)

    22 N/A URS0000D77917 N/A synthetic
    construct

    32630
    N/A Assembly2
    rna:C:48~69 72~85,87~92
    5791 5y6z:B
    (2.5Å)

    15 N/A URS0000CBFF52 N/A synthetic
    construct

    32630
    29164396 Assembly1
    rna:C:690~701 601~611
    5792 5y6z:C
    (2.5Å)

    12 N/A URS000080DF73 N/A synthetic
    construct

    32630
    29164396 Assembly1
    rna:B:597~611 691~701
    5793 5y6z:F
    (2.5Å)

    18 N/A URS0000CBFF52 N/A synthetic
    construct

    32630
    29164396 Assembly2
    rna:G:690~701 601~612
    5794 5y6z:G
    (2.5Å)

    12 N/A URS000080DF73 N/A synthetic
    construct

    32630
    29164396 Assembly2
    rna:F:582~613 690~701
    5795 5y85:A
    (2.001Å)

    18 N/A URS0000CBFF44 N/A metagenome
    256318
    29081514 Assembly1
    rna:B:1~50 1~18
    5796 5y85:B
    (2.001Å)

    50 GO:0003824 (F) catalytic activity URS0000CBFF28 RF02681 metagenome
    256318
    29081514 Assembly1
    rna:A:1~18 1~6,13,15~16,18,38~43,45~50
    5797 5y85:C
    (2.001Å)

    18 N/A URS0000CBFF44 N/A metagenome
    256318
    29081514 Assembly2
    rna:D:1~50 1~18
    5798 5y85:D
    (2.001Å)

    50 GO:0003824 (F) catalytic activity URS0000CBFF28 RF02681 metagenome
    256318
    29081514 Assembly2
    rna:C:1~18 1~6,13,15~16,38~43,45~50
    5799 5y87:A
    (2.132Å)

    18 N/A URS0000CBFF44 N/A metagenome
    256318
    29081514 Assembly1
    rna:B:1~50 1~18
    5800 5y87:B
    (2.132Å)

    50 GO:0003824 (F) catalytic activity URS0000CBFF28 RF02681 metagenome
    256318
    29081514 Assembly1
    rna:A:1~18 1~6,13,15~16,18,38~43,45~50
    << < 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.