SEQ2FUN

FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    5801 5y87:C
    (2.132Å)
    		 18 N/A URS0000CBFF44 N/A metagenome
    256318    		 29081514 Assembly2
    rna:D:1~50 1~18
    5802 5y87:D
    (2.132Å)
    		 50 GO:0003824 (F) catalytic activity URS0000CBFF28 RF02681 metagenome
    256318    		 29081514 Assembly2
    rna:C:1~18 1~6,13,15~16,18,38~43,45~50
    5803 5y88:B
    (3.46Å)
    		 117 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000053F313 RF00020 Saccharomyces
    cerevisiae
    S288C
    559292    		 28919079 Assembly1
    rna:D:1~101 98~99
    5804 5y88:D
    (3.46Å)
    		 101 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00006184A9 RF00026 Saccharomyces
    cerevisiae
    S288C
    559292    		 28919079 Assembly1
    rna:B:28~183 72~73,75
    rna:E:1~504 45~51,79
    rna:F:1~1120 53,55~62,88,93~101
    5805 5y88:E
    (3.46Å)
    		 28 N/A N/A N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 28919079 Assembly1
    rna:D:1~101 2~8
    rna:F:1~1120 492~495,497~500,502~504
    5806 5y88:F
    (3.46Å)
    		 82 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS000023C730 RF00004 Saccharomyces
    cerevisiae
    S288C
    559292    		 28919079 Assembly1
    rna:D:1~101 4~13,17,21~23,26~29
    rna:E:1~504 32~35,37~43
    5807 5ylz:B
    (3.6Å)
    		 117 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000053F313 RF00020 Saccharomyces
    cerevisiae
    S288C
    559292    		 29153833 Assembly1
    rna:D:1~103 98~99
    rna:E:-13~355 96~100
    5808 5ylz:D
    (3.6Å)
    		 103 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00006184A9 RF00026 Saccharomyces
    cerevisiae
    S288C
    559292    		 29153833 Assembly1
    rna:B:28~183 72~73,75~76
    rna:E:-13~355 45~51,58~60,77,79
    rna:F:1~1120 53,55~62,88,92~103
    5809 5ylz:E
    (3.6Å)
    		 62 N/A N/A N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 29153833 Assembly1
    rna:B:28~183 -5~-1,351~352
    rna:D:1~103 -1,2~8,350~351
    rna:F:1~1120 287~300,302~304
    5810 5ylz:F
    (3.6Å)
    		 91 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS000023C730 RF00004 Saccharomyces
    cerevisiae
    S288C
    559292    		 29153833 Assembly1
    rna:D:1~103 1~13,17,21~23,26~30
    rna:E:-13~355 32~47
    5811 5yzg:B
    (4.1Å)
    		 84 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000075BAAE RF00020 Homo
    sapiens
    9606    		 29301961
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390    		 Assembly1
    rna:F:1~97 42~43
    rna:G:-23~154 41~44
    5812 5yzg:F
    (4.1Å)
    		 97 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00001EC8D7 RF00026 Homo
    sapiens
    9606    		 29301961
    1334

    1124

    s59

    M021_0.6    		 Assembly1
    rna:B:8~104 67,69~70
    rna:G:-23~154 29~30,32~34,36,38~41,43~45,53~
    54,71,73
    rna:H:1~184 47,49~56,80,82~83,87~97
    5813 5yzg:G
    (4.1Å)
    		 88 N/A N/A N/A Homo
    sapiens
    9606    		 29301961
    175

    996    		 Assembly1
    rna:B:8~104 -5~-3,-1
    rna:F:1~97 -2,1,3~10,12~14,16,144
    rna:H:1~184 2,130,132~135,138~143,145~147
    5814 5yzg:H
    (4.1Å)
    		 139 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003EE995 RF00004 Homo
    sapiens
    9606    		 29301961
    1212

    1340

    1110

    1373

    M068_0.6

    504    		 Assembly1
    rna:F:1~97 1~12,16~17,19~22,25~28
    rna:G:-23~154 31~33,35~39,41~46
    5815 5z1h:A
    (2.4Å)
    		 19 N/A URS000080DDE4 N/A synthetic
    construct
    32630    		 29766661 Assembly1
    rna:B:24~46 3~16,19~23
    5816 5z1h:B
    (2.4Å)
    		 23 N/A URS000080DDE4 N/A synthetic
    construct
    32630    		 29766661 Assembly1
    rna:A:3~23 26~39,42~46
    5817 5z1i:A
    (1.903Å)
    		 21 N/A URS0000D56C51 N/A synthetic
    construct
    32630    		 29766661 Assembly1
    rna:A-2:3~23 3~16,19~23
    5818 5z3g:A
    (3.65Å)
    		 1501 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02540
    RF02543    		 Saccharomyces
    cerevisiae
    4932    		 29557065
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:B:1~156 1,3~23,59,330~337,339~342,345~
    346,349,351,368~369,404~409,41
    1~420,656~657,691,1394~1395,13
    99,1419,1441
    rna:C:1~232 1,3
    5819 5z3g:B
    (3.65Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 29557065
    441    		 Assembly1
    rna:A:1~3395 3~12,14~22,24~33,35~37,40,52~5
    3,104,136,138~150,152~156
    5820 5z3g:C
    (3.65Å)
    		 65 N/A URS000013305B N/A Saccharomyces
    cerevisiae
    4932    		 29557065 Assembly1
    rna:A:1~3395 231~232
    5821 5z56:B
    (5.1Å)
    		 84 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000075BAAE RF00020 Homo
    sapiens
    9606    		 29360106
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390    		 Assembly1
    rna:F:1~97 42~44
    rna:G:-12~163 40~44
    5822 5z56:F
    (5.1Å)
    		 93 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00001EC8D7 RF00026 Homo
    sapiens
    9606    		 29360106
    1334

    1124

    s59

    M021_0.6    		 Assembly1
    rna:B:8~104 66~67,69~70
    rna:G:-12~163 30,32~41,43~45,73
    rna:H:1~184 47~56,87~95,97
    5823 5z56:G
    (5.1Å)
    		 77 N/A N/A N/A unidentified
    adenovirus
    10535    		 29360106 Assembly1
    rna:B:8~104 -5~-1
    rna:F:1~97 3~14,16~17
    rna:H:1~184 132~135,137~142,145~147
    5824 5z56:H
    (5.1Å)
    		 136 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003EE995 RF00004 Homo
    sapiens
    9606    		 29360106
    M068_0.6

    1384

    504

    1212

    1373    		 Assembly1
    rna:F:1~97 1,3~11,20~22,25~28
    rna:G:-12~163 31~33,35~45
    5825 5z57:B
    (6.5Å)
    		 84 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000075BAAE RF00020 Homo
    sapiens
    9606    		 29360106
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390    		 Assembly1
    rna:F:1~97 42~44
    rna:G:-12~163 40~44
    5826 5z57:F
    (6.5Å)
    		 93 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00001EC8D7 RF00026 Homo
    sapiens
    9606    		 29360106
    1334

    1124

    s59

    M021_0.6    		 Assembly1
    rna:B:8~104 66~67,69~70
    rna:G:-12~163 30,32~41,43~45,73
    rna:H:1~184 47~56,87~95,97
    5827 5z57:G
    (6.5Å)
    		 77 N/A N/A N/A unidentified
    adenovirus
    10535    		 29360106 Assembly1
    rna:B:8~104 -5~-1
    rna:F:1~97 3~14,16~17
    rna:H:1~184 132~135,137~142,145~147
    5828 5z57:H
    (6.5Å)
    		 136 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003EE995 RF00004 Homo
    sapiens
    9606    		 29360106
    M068_0.6

    1384

    504

    1212

    1373    		 Assembly1
    rna:F:1~97 1,3~11,20~22,25~28
    rna:G:-12~163 31~33,35~45
    5829 5z58:B
    (4.9Å)
    		 84 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000075BAAE RF00020 Homo
    sapiens
    9606    		 29360106
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390    		 Assembly1
    rna:F:1~97 42~44
    rna:G:-12~163 40~44
    5830 5z58:F
    (4.9Å)
    		 93 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00001EC8D7 RF00026 Homo
    sapiens
    9606    		 29360106
    1334

    1124

    s59

    M021_0.6    		 Assembly1
    rna:B:8~104 66~67,69~70
    rna:G:-12~163 30,32~41,43~45,73
    rna:H:1~184 47~56,87~95,97
    5831 5z58:G
    (4.9Å)
    		 77 N/A N/A N/A unidentified
    adenovirus
    10535    		 29360106 Assembly1
    rna:B:8~104 -5~-1
    rna:F:1~97 3~14,16~17
    rna:H:1~184 132~135,137~142,145~147
    5832 5z58:H
    (4.9Å)
    		 136 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003EE995 RF00004 Homo
    sapiens
    9606    		 29360106
    M068_0.6

    1384

    504

    1212

    1373    		 Assembly1
    rna:F:1~97 1,3~11,20~22,25~28
    rna:G:-12~163 31~33,35~45
    5833 5z71:A
    (2.5Å)
    		 19 N/A URS0000D77917 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:25 3~15,19~23
    5834 5z71:B
    (2.5Å)
    		 22 N/A URS0000D77917 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:2~23 26~31,33~39,42~46
    5835 5z98:C
    (2.2Å)
    		 10 N/A URS0000D77949 N/A unidentified
    32644    		 30060196 Assembly1
    rna:D:1~10 3~9
    5836 5z98:D
    (2.2Å)
    		 10 N/A URS0000D77946 N/A unidentified
    32644    		 30060196 Assembly1
    rna:C:1~10 3~9
    5837 5zeb:A
    (3.4Å)
    		 3102 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000BC467B RF02540
    RF02541    		 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 30206241 Assembly1
    rna:a:9~1518 1919~1921,2053~2054,2063,2065,
    2136~2137,2140,2143~2144,2171~
    2173,2183~2185
    rna:v:1~77 2147,2288,2475~2477,2479,2674~
    2675
    rna:B:1~117 976~978,1031~1034,1068
    5838 5zeb:B
    (3.4Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000047BBB1 RF00001 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 30206241 Assembly1
    rna:A:2~3119 78~81,88,94~97
    5839 5zeb:a
    (3.4Å)
    		 1506 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001AF2F7 RF00177
    RF01959
    RF01960    		 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 30206241 Assembly1
    rna:v:1~77 770,948,1210~1211,1320~1322,13
    83
    rna:A:2~3119 682,763~764,1390~1392,1401~140
    2,1412,1457~1459,1467~1468,147
    7~1480,1501
    5840 5zeb:v
    (3.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 30206241 Assembly1
    rna:a:9~1518 31~32,35,39~42
    rna:A:2~3119 2,12,25,75~77
    5841 5zeg:A
    (2.4Å)
    		 23 N/A URS000086854A N/A synthetic
    construct
    32630    		 29036479 Assembly1
    rna:B:24~46 3~16,19~23
    5842 5zeg:B
    (2.4Å)
    		 23 N/A URS000086854A N/A synthetic
    construct
    32630    		 29036479 Assembly1
    rna:A:1~23 26~39,41~46
    5843 5zeg:C
    (2.4Å)
    		 23 N/A URS000086854A N/A synthetic
    construct
    32630    		 29036479 Assembly2
    rna:C-2:1~23 3~16,19~23
    5844 5zei:A
    (2.1Å)
    		 22 N/A URS0000D56C3E N/A synthetic
    construct
    32630    		 29036479 Assembly1
    rna:B:26~46 3~16,19~23
    5845 5zei:B
    (2.1Å)
    		 21 N/A URS0000D56C39 N/A synthetic
    construct
    32630    		 29036479 Assembly1
    rna:A:2~23 26~39,42~46
    5846 5zej:A
    (3.5Å)
    		 22 N/A URS0000D56C3E N/A synthetic
    construct
    32630    		 29036479 Assembly1
    rna:B:25 3~16,19~23
    5847 5zej:B
    (3.5Å)
    		 22 N/A URS0000D56C3E N/A synthetic
    construct
    32630    		 29036479 Assembly1
    rna:A:2~23 26~34,36~39,42~46
    5848 5zem:A
    (3.103Å)
    		 22 N/A URS0000D56C3E N/A synthetic
    construct
    32630    		 29036479 Assembly1
    rna:B:26~46 3~16,19~23
    5849 5zem:B
    (3.103Å)
    		 21 N/A URS0000D56C3E N/A synthetic
    construct
    32630    		 29036479 Assembly1
    rna:A:2~23 26~31,33,35~39,42~46
    5850 5zep:A
    (3.4Å)
    		 3102 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000BC467B RF02540
    RF02541    		 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 30206241 Assembly1
    rna:a:9~1518 1919,2065,2136~2138,2143~2144,
    2172~2173
    rna:w:1~77 2068~2069,2645
    rna:B:1~117 976~978,1031~1034,1068
    5851 5zep:B
    (3.4Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000047BBB1 RF00001 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 30206241 Assembly1
    rna:A:2~3119 78~81,88,94~97
    5852 5zep:a
    (3.4Å)
    		 1506 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001AF2F7 RF00177
    RF01959
    RF01960    		 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 30206241 Assembly1
    rna:w:1~77 1322,1365~1366
    rna:A:2~3119 682,1390~1392,1401~1402,1458~1
    459,1477~1479,1501
    5853 5zep:w
    (3.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 30206241 Assembly1
    rna:A:2~3119 71~73,77
    5854 5zet:A
    (3.2Å)
    		 3102 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000BC467B RF02540
    RF02541    		 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 30206241 Assembly1
    rna:B:1~117 976~978,1031~1034,1068
    5855 5zet:B
    (3.2Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000047BBB1 RF00001 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 30206241 Assembly1
    rna:A:2~3119 78~81,88,94~97
    5856 5zeu:a
    (3.7Å)
    		 1506 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001AF2F7 RF00177
    RF01959
    RF01960    		 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 30206241 Assembly1
    rna:v:1~77 770,948,1210~1211,1320~1322,13
    83
    5857 5zeu:v
    (3.7Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 30206241 Assembly1
    rna:a:9~1518 31~32,35,39~42
    5858 5zey:B
    (12.5Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 30206241 Assembly1
    rna:A:1~369 35~36
    5859 5zlu:DD
    (3.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000D77933 RF00005 Thermus
    thermophilus
    HB8
    300852    		 29712846 Assembly1
    rna:W:14~20 35,37~38
    rna:G:5~1542 31~32,35,39,41~42
    5860 5zlu:G
    (3.6Å)
    		 1514 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000D7794C RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 29712846 Assembly1
    rna:W:14~20 693,926,1397,1400~1401
    rna:V:5~2898 702,1407~1409,1418,1429,1483,1
    492~1495,1517
    rna:DD:1~77 790,966,1230,1338~1340,1400
    5861 5zlu:V
    (3.6Å)
    		 2875 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000D7791D RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 29712846 Assembly1
    rna:G:5~1542 1703,1847,1912~1913,1919~1920,
    1948,1959~1960
    rna:X:-1~120 861,863,918
    5862 5zlu:X
    (3.6Å)
    		 123 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001170B4 RF00001 Thermus
    thermophilus
    HB8
    300852    		 29712846 Assembly1
    rna:V:5~2898 79,96,100
    5863 5zwm:B
    (3.4Å)
    		 175 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000053F313 RF00020 Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:F:1~112 96~100
    5864 5zwm:F
    (3.4Å)
    		 99 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS0000D7792B RF00026 Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:I:1~154 56~81
    rna:B:1~183 26~30
    rna:H:3~1169 92~102
    5865 5zwm:G
    (3.4Å)
    		 44 N/A N/A N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:H:3~1169 488~500,502~504
    5866 5zwm:H
    (3.4Å)
    		 206 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS000023C730 RF00004 Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:F:1~112 3~13
    rna:G:479~522 33~46
    5867 5zwm:I
    (3.4Å)
    		 110 GO:0017070 (F) U6 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005687 (C) U4 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00001143F5 RF00015 Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:F:1~112 1~18,57~63
    5868 5zwn:G
    (3.4Å)
    		 22 N/A N/A N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:P:1~565 0,2~4,6~10
    5869 5zwn:P
    (3.4Å)
    		 480 GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0005685 (C) U1 snRNP    		 URS000012D749 RF00488 Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:G:-9~12 1~8,10
    5870 5zwo:B
    (3.9Å)
    		 175 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000053F313 RF00020 Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:F:1~112 96~99
    5871 5zwo:F
    (3.9Å)
    		 99 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS0000D7792B RF00026 Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:B:1~183 27~30
    rna:I:1~154 56~82
    rna:H:3~1169 92~102
    5872 5zwo:G
    (3.9Å)
    		 60 N/A N/A N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:H:3~1169 488~500,502~504
    5873 5zwo:H
    (3.9Å)
    		 150 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS0000D77944 RF00004 Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:F:1~112 3~13
    rna:G:463~522 32~46
    5874 5zwo:I
    (3.9Å)
    		 110 GO:0017070 (F) U6 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005687 (C) U4 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS0000D77922 RF00015 Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:F:1~112 1~18,57~63
    5875 6ah0:F
    (5.7Å)
    		 69 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00001EC8D7 RF00026 Homo
    sapiens
    9606    		 30315277
    1334

    1124

    1168

    s59

    M021_0.6    		 Assembly1
    rna:H:3~184 85~95
    rna:I:1~144 48~75
    5876 6ah0:G
    (5.7Å)
    		 42 N/A N/A N/A Homo
    sapiens
    9606    		 30315277
    605

    1129

    M156_0.6

    596

    609

    332

    M077_0.6

    M149_0.6

    726

    775

    s65

    1074

    798

    1039

    1018

    M012_0.6

    1015

    1094

    1096

    996

    1159

    1158

    772

    465

    611

    1098

    1135

    s95

    725

    765

    1069

    1286

    1061

    1063

    1065

    s101

    M232_0.6

    1106

    1243

    1242

    683

    720

    721

    s67

    686

    1108    		 Assembly1
    rna:H:3~184 131~135,137~142,145~147
    5877 6ah0:H
    (5.7Å)
    		 109 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003EE995 RF00004 Homo
    sapiens
    9606    		 30315277
    1212

    1373

    504    		 Assembly1
    rna:F:1~107 3~12,14
    rna:G:122~163 31~33,35~46
    5878 6ah0:I
    (5.7Å)
    		 117 GO:0017070 (F) U6 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005687 (C) U4 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00003F07BD RF00015 Homo
    sapiens
    9606    		 30315277
    s37    		 Assembly1
    rna:F:1~107 1~17,21~22,55~64
    5879 6ah3:A
    (3.48Å)
    		 369 EC:3.1.26.5 ribonuclease P
    GO:0004526 (F) ribonuclease P activity
    GO:0008033 (P) tRNA processing
    GO:0030677 (C) ribonuclease P complex    		 URS0000413C32 RF00009 Saccharomyces
    cerevisiae
    S288C
    559292    		 30262633 Assembly1
    rna:T:-3~76 91,204,245,251,300,313~314,344
    ,351
    5880 6ah3:T
    (3.48Å)
    		 80 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000D77911 RF00005 Saccharomyces
    cerevisiae
    S288C
    559292    		 30262633 Assembly1
    rna:A:1~369 -2~1,17,19,55~56,65,73
    5881 6ahd:B
    (3.8Å)
    		 115 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000075BAAE RF00020 Homo
    sapiens
    9606    		 30315277
    1213

    M150_0.6

    1263

    42

    1267

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390    		 Assembly1
    rna:G:-12~163 40~44
    5882 6ahd:F
    (3.8Å)
    		 94 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00001EC8D7 RF00026 Homo
    sapiens
    9606    		 30315277
    1334

    1124

    s59

    M021_0.6    		 Assembly1
    rna:I:1~144 50~51,53~65,67~75
    rna:G:-12~163 29~36,38~44
    rna:H:3~184 85~95
    5883 6ahd:G
    (3.8Å)
    		 77 N/A N/A N/A Homo
    sapiens
    9606    		 30315277
    605

    1129

    M156_0.6

    596

    609

    332

    M077_0.6

    M149_0.6

    726

    775

    s65

    1074

    798

    1039

    1018

    M012_0.6

    1015

    1094

    1096

    996

    1159

    1158

    772

    465

    611

    1098

    1135

    s95

    725

    765

    1069

    1286

    1061

    1063

    1065

    s101

    M232_0.6

    1106

    1243

    1242

    683

    720

    721

    s67

    686

    1108    		 Assembly1
    rna:B:3~117 -5~-1
    rna:F:1~105 3~11,13~18
    rna:H:3~184 131~135,137~142,145~147
    5884 6ahd:H
    (3.8Å)
    		 109 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003EE995 RF00004 Homo
    sapiens
    9606    		 30315277
    1212

    1373

    504    		 Assembly1
    rna:F:1~105 3~12,14
    rna:G:-12~163 31~33,35~46
    5885 6ahd:I
    (3.8Å)
    		 136 GO:0017070 (F) U6 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005687 (C) U4 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00003F07BD RF00015 Homo
    sapiens
    9606    		 30315277
    995

    1368    		 Assembly1
    rna:F:1~105 1~9,11~18,55~62
    5886 6ahu:A
    (3.66Å)
    		 341 EC:3.1.26.5 ribonuclease P
    GO:0004526 (F) ribonuclease P activity
    GO:0008033 (P) tRNA processing
    GO:0030677 (C) ribonuclease P complex    		 URS000013F331 RF00009 Homo
    sapiens
    9606    		 30454648
    1165

    1236

    1314

    837

    953

    M348_0.6

    987

    1333

    s49

    M151_0.6

    M044_0.6

    901

    s53

    s52

    506

    M070_0.6

    s61

    21    		 Assembly1
    rna:T:1~72 79,120,142,244,250,316~317,324
    5887 6ahu:T
    (3.66Å)
    		 72 GO:0030533 (F) triplet codon-amino aci... URS0000E60B72 RF00005 Homo
    sapiens
    9606    		 30454648
    1334

    M168_0.6    		 Assembly1
    rna:A:1~341 1,19,54~56,65
    5888 6az1:1
    (2.7Å)
    		 1760 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000CBFF3E RF01960
    RF01959
    RF00177    		 Leishmania
    donovani
    5661    		 29150609 Assembly1
    rna:2:1~76 626~627,1626,2159
    rna:3:1~76 1248,1543,1863~1864,1995~1997,
    2057
    rna:4:1~76 1151,1997,2040
    rna:5:1~12 626,1151,1502,1828,2054,2057~2
    058,2158~2159,2164
    5889 6az1:2
    (2.7Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E264 RF00005 Escherichia
    coli
    562    		 29150609 Assembly1
    rna:1:1~2203 34~37
    rna:5:1~12 34~37
    5890 6az1:3
    (2.7Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 29150609 Assembly1
    rna:1:1~2203 30~32,34,38~41
    rna:5:1~12 34~37
    5891 6az1:4
    (2.7Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E264 RF00005 Escherichia
    coli
    562    		 29150609 Assembly1
    rna:1:1~2203 34~35,37
    rna:5:1~12 35~36
    5892 6az1:5
    (2.7Å)
    		 12 N/A URS00021ED951 N/A Leishmania
    donovani
    5661    		 29150609 Assembly1
    rna:1:1~2203 2~10,12
    rna:2:1~76 8~11
    rna:3:1~76 5~7
    5893 6az3:1
    (2.5Å)
    		 1620 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000CBFF5D RF02543
    RF02540    		 Leishmania
    donovani
    5661    		 29150609 Assembly1
    rna:2:2~1601 38~41,69,92,313,321,328,341,34
    3~350,460~464,668~669,674,676~
    685,747~749,762,818,826~828,85
    6~860,869~870,881~882,911~912,
    916,920,922~927,929~930,932~93
    3,935~938,941~943,947,951,959,
    964~967,969,972,975,988~991,10
    06~1013,1018,1044~1046,1098~10
    99,1105~1106,1109,1173,1180~11
    82,1185~1193,1207~1209,1264~12
    67,1364~1370,1372~1373,1528,15
    35~1547,1549,1583~1603,1613,16
    15~1616,1621,1628~1632,1634~16
    37,1651~1653,1658~1659,1663,16
    68~1669,1685,1721~1722,1732,17
    57~1758,1760,1772~1782
    rna:3:2~213 876,889~890,906~907,1640~1642,
    1742~1744,1748~1752,1769~1770,
    1780~1781
    rna:4:1~183 222~230,455,457,461,1250~1251,
    1270,1506,1546~1547
    rna:5:1~133 1566,1570
    rna:6:3~73 491~492,643~644
    rna:7:1~169 3~21,57,142,184,273~275,369~37
    7,379~382,385~386,389,391,408,
    410,439,445~459,688~689,729,14
    85~1486,1490,1511~1512,1533,16
    37~1638,1670,1736~1737,1774~17
    75,1777~1778
    rna:8:3~120 1047~1049,1052,1103,1105~1107,
    1213,1228,1258,1265
    5894 6az3:2
    (2.5Å)
    		 1078 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000CBFF59 RF02543
    RF02540    		 Leishmania
    donovani
    5661    		 29150609 Assembly1
    rna:1:3~1782 2~26,28,31~34,37~42,47~50,54~6
    0,62~63,73~75,91~92,378~385,38
    8,391~393,412~414,421,468~470,
    570,592~593,599~609,612~627,63
    0~632,643,648,654,656~661,666,
    768~769,1026~1027,1029,1037,10
    39,1042,1044,1046,1060~1066,10
    69~1071,1074,1147~1149,1155~11
    57,1192,1209,1213~1215,1217~12
    24,1226~1227,1238~1242,1248,12
    50~1254,1256,1264~1265,1267,12
    73~1274,1294~1296,1299,1303~13
    11,1323~1326,1377~1378,1389,13
    96~1397,1417~1419,1422,1438~14
    39
    rna:3:2~213 4~5,42~43,132~133,347~348,978~
    979
    rna:4:1~183 44~45,52~53,78~80,360~363,585,
    587~588,590,631,1330~1331,1339
    ~1341,1347~1349,1351,1372,1434
    ~1436,1438,1446
    rna:5:1~133 68~69,124~127,355~357,595,635~
    636,1430~1431
    rna:6:3~73 1442~1444,1451~1452
    rna:7:1~169 9,15,632~633,784,1012~1013,143
    3~1434
    5895 6az3:3
    (2.5Å)
    		 177 N/A URS0000CBFF33 N/A Leishmania
    donovani
    5661    		 29150609 Assembly1
    rna:1:3~1782 15,29~30,69~71,119~121,145,149
    ~150,163~164,199~202
    rna:2:2~1601 14~15,22~23,43,179~180,209~210
    rna:4:1~183 54,57~59
    5896 6az3:4
    (2.5Å)
    		 183 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000037206E RF02543
    RF02540    		 Leishmania
    donovani
    5661    		 29150609 Assembly1
    rna:1:3~1782 7~17,20,105~106,133,143,159,17
    0
    rna:2:2~1601 41~43,52~54,56~60,81~82,84,90~
    94,105,107~111,117~118,121,133
    ~134,157~159,170,172~174
    rna:3:2~213 97~98
    rna:5:1~133 3,22,27,87~88,112~114,180~181
    rna:6:3~73 1,23
    5897 6az3:5
    (2.5Å)
    		 97 N/A URS0000A76333 N/A Leishmania
    donovani
    5661    		 29150609 Assembly1
    rna:1:3~1782 8,125~127
    rna:2:2~1601 16~19,65~67,89~91,105
    rna:4:1~183 1~5,38~40,99~101,103~104,133
    5898 6az3:6
    (2.5Å)
    		 71 N/A URS0000CBFF43 N/A Leishmania
    donovani
    5661    		 29150609 Assembly1
    rna:1:3~1782 64~66
    rna:2:2~1601 5~9,14
    rna:4:1~183 3~4
    5899 6az3:7
    (2.5Å)
    		 163 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A76380 RF00002 Leishmania
    donovani
    5661    		 29150609 Assembly1
    rna:1:3~1782 4~21,23~37,40~41,53~54,68,94,1
    03,105,107~109,111,114,127,139
    ~140,151~156,159~163,165~169
    rna:2:2~1601 1~3,112,125,164,166,168
    rna:4:1~183 9~10
    5900 6az3:8
    (2.5Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000047B859 RF00001 Leishmania
    donovani
    5661    		 29150609 Assembly1
    rna:1:3~1782 79~82,86,90,100,102~105
    << < 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.