SEQ2FUN

FURNA
Download all results in tab-seperated text for 16611 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
  • Hover over PDB to view the title of the structure.
  • Hover over Rfam to view names of Rfam families.
  • Hover over PubMed to view title of the PubMed publications.
  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

    • Sort results by
    << < 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 > >>
    Go to page

    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    5801 5xy3:3
    (3.2Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000C225A RF00001 Trichomonas
    vaginalis
    5722    		 28809395 Assembly1
    rna:1:2~2755 77~80,84,88,98,100~102
    5802 5xy3:4
    (3.2Å)
    		 154 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000527ECE RF00002 Trichomonas
    vaginalis
    5722    		 28809395 Assembly1
    rna:1:2~2755 1~3,5~14,16~23,25~38,41~42,53~
    54,103,105,108,112~113,141~153
    ,155~160
    5803 5xym:A
    (3.08Å)
    		 2665 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003A7753 RF02541 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 28875450 Assembly1
    rna:B:2~117 979~981,1033~1036
    5804 5xym:B
    (3.08Å)
    		 116 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000047BBB1 RF00001 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 28875450 Assembly1
    rna:A:6~3115 12,79~81,95,97~98
    5805 5xz1:A
    (3.008Å)
    		 22 N/A URS0000D77917 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:25~46 3~16,19~23
    5806 5xz1:B
    (3.008Å)
    		 22 N/A URS0000D77917 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:2~23 26~39,42~46
    5807 5xz1:C
    (3.008Å)
    		 22 N/A URS0000D77917 N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:D:71~92 48~62,65~69
    5808 5xz1:D
    (3.008Å)
    		 22 N/A URS0000D77917 N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:C:48~69 72~85,87~92
    5809 5y6z:B
    (2.5Å)
    		 15 N/A URS0000CBFF52 N/A synthetic
    construct
    32630    		 29164396 Assembly1
    rna:C:690~701 601~611
    5810 5y6z:C
    (2.5Å)
    		 12 N/A URS000080DF73 N/A synthetic
    construct
    32630    		 29164396 Assembly1
    rna:B:597~611 691~701
    5811 5y6z:F
    (2.5Å)
    		 18 N/A URS0000CBFF52 N/A synthetic
    construct
    32630    		 29164396 Assembly2
    rna:G:690~701 601~612
    5812 5y6z:G
    (2.5Å)
    		 12 N/A URS000080DF73 N/A synthetic
    construct
    32630    		 29164396 Assembly2
    rna:F:582~613 690~701
    5813 5y85:A
    (2.001Å)
    		 18 N/A URS0000CBFF44 N/A metagenome
    256318    		 29081514 Assembly1
    rna:B:1~50 1~18
    5814 5y85:B
    (2.001Å)
    		 50 GO:0003824 (F) catalytic activity URS0000CBFF28 RF02681 metagenome
    256318    		 29081514 Assembly1
    rna:A:1~18 1~6,13,15~16,18,38~43,45~50
    5815 5y85:C
    (2.001Å)
    		 18 N/A URS0000CBFF44 N/A metagenome
    256318    		 29081514 Assembly2
    rna:D:1~50 1~18
    5816 5y85:D
    (2.001Å)
    		 50 GO:0003824 (F) catalytic activity URS0000CBFF28 RF02681 metagenome
    256318    		 29081514 Assembly2
    rna:C:1~18 1~6,13,15~16,38~43,45~50
    5817 5y87:A
    (2.132Å)
    		 18 N/A URS0000CBFF44 N/A metagenome
    256318    		 29081514 Assembly1
    rna:B:1~50 1~18
    5818 5y87:B
    (2.132Å)
    		 50 GO:0003824 (F) catalytic activity URS0000CBFF28 RF02681 metagenome
    256318    		 29081514 Assembly1
    rna:A:1~18 1~6,13,15~16,18,38~43,45~50
    5819 5y87:C
    (2.132Å)
    		 18 N/A URS0000CBFF44 N/A metagenome
    256318    		 29081514 Assembly2
    rna:D:1~50 1~18
    5820 5y87:D
    (2.132Å)
    		 50 GO:0003824 (F) catalytic activity URS0000CBFF28 RF02681 metagenome
    256318    		 29081514 Assembly2
    rna:C:1~18 1~6,13,15~16,18,38~43,45~50
    5821 5y88:B
    (3.46Å)
    		 117 GO:0000386 (F) second spliceosomal tra...
    GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0000245 (P) spliceosomal complex as...
    GO:0000350 (P) generation of catalytic...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0000398 (P) mRNA splicing, via spli...
    GO:0034403 (P) alignment of 3' and 5' ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000053F313 RF00020 Saccharomyces
    cerevisiae
    S288C
    559292    		 28919079 Assembly1
    rna:D:1~101 98~99
    5822 5y88:D
    (3.46Å)
    		 101 GO:0030621 (F) U4 snRNA binding
    GO:0017069 (F) snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0000350 (P) generation of catalytic...
    GO:0000388 (P) spliceosome conformatio...
    GO:0000398 (P) mRNA splicing, via spli...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00006184A9 RF00026 Saccharomyces
    cerevisiae
    S288C
    559292    		 28919079 Assembly1
    rna:B:28~183 72~73,75
    rna:E:1~504 45~51,79
    rna:F:1~1120 53,55~62,88,93~101
    5823 5y88:E
    (3.46Å)
    		 28 N/A N/A N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 28919079 Assembly1
    rna:D:1~101 2~8
    rna:F:1~1120 492~495,497~500,502~504
    5824 5y88:F
    (3.46Å)
    		 82 GO:0045131 (F) pre-mRNA branch point b...
    GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0000398 (P) mRNA splicing, via spli...
    GO:0005686 (C) U2 snRNP    		 URS000023C730 RF00004 Saccharomyces
    cerevisiae
    S288C
    559292    		 28919079 Assembly1
    rna:D:1~101 4~13,17,21~23,26~29
    rna:E:1~504 32~35,37~43
    5825 5ylz:B
    (3.6Å)
    		 117 GO:0000386 (F) second spliceosomal tra...
    GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0000245 (P) spliceosomal complex as...
    GO:0000350 (P) generation of catalytic...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0000398 (P) mRNA splicing, via spli...
    GO:0034403 (P) alignment of 3' and 5' ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000053F313 RF00020 Saccharomyces
    cerevisiae
    S288C
    559292    		 29153833 Assembly1
    rna:D:1~103 98~99
    rna:E:-13~355 96~100
    5826 5ylz:D
    (3.6Å)
    		 103 GO:0030621 (F) U4 snRNA binding
    GO:0017069 (F) snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0000350 (P) generation of catalytic...
    GO:0000388 (P) spliceosome conformatio...
    GO:0000398 (P) mRNA splicing, via spli...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00006184A9 RF00026 Saccharomyces
    cerevisiae
    S288C
    559292    		 29153833 Assembly1
    rna:B:28~183 72~73,75~76
    rna:E:-13~355 45~51,58~60,77,79
    rna:F:1~1120 53,55~62,88,92~103
    5827 5ylz:E
    (3.6Å)
    		 62 N/A N/A N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 29153833 Assembly1
    rna:B:28~183 -5~-1,351~352
    rna:D:1~103 -1,2~8,350~351
    rna:F:1~1120 287~300,302~304
    5828 5ylz:F
    (3.6Å)
    		 91 GO:0045131 (F) pre-mRNA branch point b...
    GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0000398 (P) mRNA splicing, via spli...
    GO:0005686 (C) U2 snRNP    		 URS000023C730 RF00004 Saccharomyces
    cerevisiae
    S288C
    559292    		 29153833 Assembly1
    rna:D:1~103 1~13,17,21~23,26~30
    rna:E:-13~355 32~47
    5829 5yzg:B
    (4.1Å)
    		 84 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000075BAAE RF00020 Homo
    sapiens
    9606    		 29301961
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390    		 Assembly1
    rna:F:1~97 42~43
    rna:G:-23~154 41~44
    5830 5yzg:F
    (4.1Å)
    		 97 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00001EC8D7 RF00026 Homo
    sapiens
    9606    		 29301961
    1334

    1124

    s59

    M021_0.6    		 Assembly1
    rna:B:8~104 67,69~70
    rna:G:-23~154 29~30,32~34,36,38~41,43~45,53~
    54,71,73
    rna:H:1~184 47,49~56,80,82~83,87~97
    5831 5yzg:G
    (4.1Å)
    		 88 N/A N/A N/A Homo
    sapiens
    9606    		 29301961
    175

    996    		 Assembly1
    rna:B:8~104 -5~-3,-1
    rna:F:1~97 -2,1,3~10,12~14,16,144
    rna:H:1~184 2,130,132~135,138~143,145~147
    5832 5yzg:H
    (4.1Å)
    		 139 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003EE995 RF00004 Homo
    sapiens
    9606    		 29301961
    1212

    1340

    1110

    1373

    M068_0.6

    504    		 Assembly1
    rna:F:1~97 1~12,16~17,19~22,25~28
    rna:G:-23~154 31~33,35~39,41~46
    5833 5z1h:A
    (2.4Å)
    		 19 N/A URS000080DDE4 N/A synthetic
    construct
    32630    		 29766661 Assembly1
    rna:B:24~46 3~16,19~23
    5834 5z1h:B
    (2.4Å)
    		 23 N/A URS000080DDE4 N/A synthetic
    construct
    32630    		 29766661 Assembly1
    rna:A:3~23 26~39,42~46
    5835 5z1i:A
    (1.903Å)
    		 21 N/A URS0000D56C51 N/A synthetic
    construct
    32630    		 29766661 Assembly1
    rna:A-2:3~23 3~16,19~23
    5836 5z3g:A
    (3.65Å)
    		 1501 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    4932    		 29557065
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:B:1~156 1,3~23,59,330~337,339~342,345~
    346,349,351,368~369,404~409,41
    1~420,656~657,691,1394~1395,13
    99,1419,1441
    rna:C:1~232 1,3
    5837 5z3g:B
    (3.65Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 29557065
    441    		 Assembly1
    rna:A:1~3395 3~12,14~22,24~33,35~37,40,52~5
    3,104,136,138~150,152~156
    5838 5z3g:C
    (3.65Å)
    		 65 N/A URS000013305B N/A Saccharomyces
    cerevisiae
    4932    		 29557065 Assembly1
    rna:A:1~3395 231~232
    5839 5z56:B
    (5.1Å)
    		 84 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000075BAAE RF00020 Homo
    sapiens
    9606    		 29360106
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390    		 Assembly1
    rna:F:1~97 42~44
    rna:G:-12~163 40~44
    5840 5z56:F
    (5.1Å)
    		 93 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00001EC8D7 RF00026 Homo
    sapiens
    9606    		 29360106
    1334

    1124

    s59

    M021_0.6    		 Assembly1
    rna:B:8~104 66~67,69~70
    rna:G:-12~163 30,32~41,43~45,73
    rna:H:1~184 47~56,87~95,97
    5841 5z56:G
    (5.1Å)
    		 77 N/A N/A N/A unidentified
    adenovirus
    10535    		 29360106 Assembly1
    rna:B:8~104 -5~-1
    rna:F:1~97 3~14,16~17
    rna:H:1~184 132~135,137~142,145~147
    5842 5z56:H
    (5.1Å)
    		 136 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003EE995 RF00004 Homo
    sapiens
    9606    		 29360106
    M068_0.6

    1384

    504

    1212

    1373    		 Assembly1
    rna:F:1~97 1,3~11,20~22,25~28
    rna:G:-12~163 31~33,35~45
    5843 5z57:B
    (6.5Å)
    		 84 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000075BAAE RF00020 Homo
    sapiens
    9606    		 29360106
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390    		 Assembly1
    rna:F:1~97 42~44
    rna:G:-12~163 40~44
    5844 5z57:F
    (6.5Å)
    		 93 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00001EC8D7 RF00026 Homo
    sapiens
    9606    		 29360106
    1334

    1124

    s59

    M021_0.6    		 Assembly1
    rna:B:8~104 66~67,69~70
    rna:G:-12~163 30,32~41,43~45,73
    rna:H:1~184 47~56,87~95,97
    5845 5z57:G
    (6.5Å)
    		 77 N/A N/A N/A unidentified
    adenovirus
    10535    		 29360106 Assembly1
    rna:B:8~104 -5~-1
    rna:F:1~97 3~14,16~17
    rna:H:1~184 132~135,137~142,145~147
    5846 5z57:H
    (6.5Å)
    		 136 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003EE995 RF00004 Homo
    sapiens
    9606    		 29360106
    M068_0.6

    1384

    504

    1212

    1373    		 Assembly1
    rna:F:1~97 1,3~11,20~22,25~28
    rna:G:-12~163 31~33,35~45
    5847 5z58:B
    (4.9Å)
    		 84 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000075BAAE RF00020 Homo
    sapiens
    9606    		 29360106
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390    		 Assembly1
    rna:F:1~97 42~44
    rna:G:-12~163 40~44
    5848 5z58:F
    (4.9Å)
    		 93 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00001EC8D7 RF00026 Homo
    sapiens
    9606    		 29360106
    1334

    1124

    s59

    M021_0.6    		 Assembly1
    rna:B:8~104 66~67,69~70
    rna:G:-12~163 30,32~41,43~45,73
    rna:H:1~184 47~56,87~95,97
    5849 5z58:G
    (4.9Å)
    		 77 N/A N/A N/A unidentified
    adenovirus
    10535    		 29360106 Assembly1
    rna:B:8~104 -5~-1
    rna:F:1~97 3~14,16~17
    rna:H:1~184 132~135,137~142,145~147
    5850 5z58:H
    (4.9Å)
    		 136 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003EE995 RF00004 Homo
    sapiens
    9606    		 29360106
    M068_0.6

    1384

    504

    1212

    1373    		 Assembly1
    rna:F:1~97 1,3~11,20~22,25~28
    rna:G:-12~163 31~33,35~45
    5851 5z71:A
    (2.5Å)
    		 19 N/A URS0000D77917 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:25 3~15,19~23
    5852 5z71:B
    (2.5Å)
    		 22 N/A URS0000D77917 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:2~23 26~31,33~39,42~46
    5853 5z98:C
    (2.2Å)
    		 10 N/A URS0000D77949 N/A unidentified
    32644    		 30060196 Assembly1
    rna:D:1~10 3~9
    5854 5z98:D
    (2.2Å)
    		 10 N/A URS0000D77946 N/A unidentified
    32644    		 30060196 Assembly1
    rna:C:1~10 3~9
    5855 5zeb:A
    (3.4Å)
    		 3102 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000BC467B RF02541 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 30206241 Assembly1
    rna:a:9~1518 1919~1921,2053~2054,2063,2065,
    2136~2137,2140,2143~2144,2171~
    2173,2183~2185
    rna:v:1~77 2147,2288,2475~2477,2479,2674~
    2675
    rna:B:1~117 976~978,1031~1034,1068
    5856 5zeb:B
    (3.4Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000047BBB1 RF00001 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 30206241 Assembly1
    rna:A:2~3119 78~81,88,94~97
    5857 5zeb:a
    (3.4Å)
    		 1506 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001AF2F7 RF00177 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 30206241 Assembly1
    rna:v:1~77 770,948,1210~1211,1320~1322,13
    83
    rna:A:2~3119 682,763~764,1390~1392,1401~140
    2,1412,1457~1459,1467~1468,147
    7~1480,1501
    5858 5zeb:v
    (3.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 30206241 Assembly1
    rna:a:9~1518 31~32,35,39~42
    rna:A:2~3119 2,12,25,75~77
    5859 5zeg:A
    (2.4Å)
    		 23 N/A URS000086854A N/A synthetic
    construct
    32630    		 29036479 Assembly1
    rna:B:24~46 3~16,19~23
    5860 5zeg:B
    (2.4Å)
    		 23 N/A URS000086854A N/A synthetic
    construct
    32630    		 29036479 Assembly1
    rna:A:1~23 26~39,41~46
    5861 5zeg:C
    (2.4Å)
    		 23 N/A URS000086854A N/A synthetic
    construct
    32630    		 29036479 Assembly2
    rna:C-2:1~23 3~16,19~23
    5862 5zei:A
    (2.1Å)
    		 22 N/A URS0000D56C3E N/A synthetic
    construct
    32630    		 29036479 Assembly1
    rna:B:26~46 3~16,19~23
    5863 5zei:B
    (2.1Å)
    		 21 N/A URS0000D56C39 N/A synthetic
    construct
    32630    		 29036479 Assembly1
    rna:A:2~23 26~39,42~46
    5864 5zej:A
    (3.5Å)
    		 22 N/A URS0000D56C3E N/A synthetic
    construct
    32630    		 29036479 Assembly1
    rna:B:25 3~16,19~23
    5865 5zej:B
    (3.5Å)
    		 22 N/A URS0000D56C3E N/A synthetic
    construct
    32630    		 29036479 Assembly1
    rna:A:2~23 26~34,36~39,42~46
    5866 5zem:A
    (3.103Å)
    		 22 N/A URS0000D56C3E N/A synthetic
    construct
    32630    		 29036479 Assembly1
    rna:B:26~46 3~16,19~23
    5867 5zem:B
    (3.103Å)
    		 21 N/A URS0000D56C3E N/A synthetic
    construct
    32630    		 29036479 Assembly1
    rna:A:2~23 26~31,33,35~39,42~46
    5868 5zep:A
    (3.4Å)
    		 3102 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000BC467B RF02541 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 30206241 Assembly1
    rna:a:9~1518 1919,2065,2136~2138,2143~2144,
    2172~2173
    rna:w:1~77 2068~2069,2645
    rna:B:1~117 976~978,1031~1034,1068
    5869 5zep:B
    (3.4Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000047BBB1 RF00001 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 30206241 Assembly1
    rna:A:2~3119 78~81,88,94~97
    5870 5zep:a
    (3.4Å)
    		 1506 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001AF2F7 RF00177 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 30206241 Assembly1
    rna:w:1~77 1322,1365~1366
    rna:A:2~3119 682,1390~1392,1401~1402,1458~1
    459,1477~1479,1501
    5871 5zep:w
    (3.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 30206241 Assembly1
    rna:A:2~3119 71~73,77
    5872 5zet:A
    (3.2Å)
    		 3102 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000BC467B RF02541 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 30206241 Assembly1
    rna:B:1~117 976~978,1031~1034,1068
    5873 5zet:B
    (3.2Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000047BBB1 RF00001 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 30206241 Assembly1
    rna:A:2~3119 78~81,88,94~97
    5874 5zeu:a
    (3.7Å)
    		 1506 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001AF2F7 RF00177 Mycolicibacterium
    smegmatis
    MC2
    155
    246196    		 30206241 Assembly1
    rna:v:1~77 770,948,1210~1211,1320~1322,13
    83
    5875 5zeu:v
    (3.7Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 30206241 Assembly1
    rna:a:9~1518 31~32,35,39~42
    5876 5zey:B
    (12.5Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 30206241 Assembly1
    rna:A:1~369 35~36
    5877 5zlu:DD
    (3.6Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000D77933 RF00005 Thermus
    thermophilus
    HB8
    300852    		 29712846 Assembly1
    rna:W:14~20 35,37~38
    rna:G:5~1542 31~32,35,39,41~42
    5878 5zlu:G
    (3.6Å)
    		 1514 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000D7794C RF00177 Thermus
    thermophilus
    HB8
    300852    		 29712846 Assembly1
    rna:W:14~20 693,926,1397,1400~1401
    rna:V:5~2898 702,1407~1409,1418,1429,1483,1
    492~1495,1517
    rna:DD:1~77 790,966,1230,1338~1340,1400
    5879 5zlu:V
    (3.6Å)
    		 2875 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000D7791D RF02541 Thermus
    thermophilus
    HB8
    300852    		 29712846 Assembly1
    rna:G:5~1542 1703,1847,1912~1913,1919~1920,
    1948,1959~1960
    rna:X:-1~120 861,863,918
    5880 5zlu:X
    (3.6Å)
    		 123 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001170B4 RF00001 Thermus
    thermophilus
    HB8
    300852    		 29712846 Assembly1
    rna:V:5~2898 79,96,100
    5881 5zwm:B
    (3.4Å)
    		 175 GO:0000386 (F) second spliceosomal tra...
    GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0000245 (P) spliceosomal complex as...
    GO:0000350 (P) generation of catalytic...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0000398 (P) mRNA splicing, via spli...
    GO:0034403 (P) alignment of 3' and 5' ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000053F313 RF00020 Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:F:1~112 96~100
    5882 5zwm:F
    (3.4Å)
    		 99 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS0000D7792B RF00026 Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:I:1~154 56~81
    rna:B:1~183 26~30
    rna:H:3~1169 92~102
    5883 5zwm:G
    (3.4Å)
    		 44 N/A N/A N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:H:3~1169 488~500,502~504
    5884 5zwm:H
    (3.4Å)
    		 206 GO:0045131 (F) pre-mRNA branch point b...
    GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0000398 (P) mRNA splicing, via spli...
    GO:0005686 (C) U2 snRNP    		 URS000023C730 RF00004 Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:F:1~112 3~13
    rna:G:479~522 33~46
    5885 5zwm:I
    (3.4Å)
    		 110 GO:0017070 (F) U6 snRNA binding
    GO:0017069 (F) snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0000398 (P) mRNA splicing, via spli...
    GO:0005687 (C) U4 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    GO:0005681 (C) spliceosomal complex    		 URS00001143F5 RF00015 Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:F:1~112 1~18,57~63
    5886 5zwn:G
    (3.4Å)
    		 22 N/A N/A N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:P:1~565 0,2~4,6~10
    5887 5zwn:P
    (3.4Å)
    		 480 GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0000398 (P) mRNA splicing, via spli...
    GO:0005685 (C) U1 snRNP
    GO:0000243 (C) commitment complex    		 URS000012D749 RF00488 Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:G:-9~12 1~8,10
    5888 5zwo:B
    (3.9Å)
    		 175 GO:0000386 (F) second spliceosomal tra...
    GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0000245 (P) spliceosomal complex as...
    GO:0000350 (P) generation of catalytic...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0000398 (P) mRNA splicing, via spli...
    GO:0034403 (P) alignment of 3' and 5' ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000053F313 RF00020 Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:F:1~112 96~99
    5889 5zwo:F
    (3.9Å)
    		 99 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS0000D7792B RF00026 Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:B:1~183 27~30
    rna:I:1~154 56~82
    rna:H:3~1169 92~102
    5890 5zwo:G
    (3.9Å)
    		 60 N/A N/A N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:H:3~1169 488~500,502~504
    5891 5zwo:H
    (3.9Å)
    		 150 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS0000D77944 RF00004 Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:F:1~112 3~13
    rna:G:463~522 32~46
    5892 5zwo:I
    (3.9Å)
    		 110 GO:0017070 (F) U6 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005687 (C) U4 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS0000D77922 RF00015 Saccharomyces
    cerevisiae
    S288C
    559292    		 29794219 Assembly1
    rna:F:1~112 1~18,57~63
    5893 6ah0:F
    (5.7Å)
    		 69 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00001EC8D7 RF00026 Homo
    sapiens
    9606    		 30315277
    1334

    1124

    1168

    s59

    M021_0.6    		 Assembly1
    rna:H:3~184 85~95
    rna:I:1~144 48~75
    5894 6ah0:G
    (5.7Å)
    		 42 N/A N/A N/A Homo
    sapiens
    9606    		 30315277
    605

    1129

    M156_0.6

    596

    609

    332

    M077_0.6

    M149_0.6

    726

    775

    s65

    1074

    798

    1039

    1018

    M012_0.6

    1015

    1094

    1096

    996

    1159

    1158

    772

    465

    611

    1098

    1135

    s95

    725

    765

    1069

    1286

    1061

    1063

    1065

    s101

    M232_0.6

    1106

    1243

    1242

    683

    720

    721

    s67

    686

    1108    		 Assembly1
    rna:H:3~184 131~135,137~142,145~147
    5895 6ah0:H
    (5.7Å)
    		 109 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003EE995 RF00004 Homo
    sapiens
    9606    		 30315277
    1212

    1373

    504    		 Assembly1
    rna:F:1~107 3~12,14
    rna:G:122~163 31~33,35~46
    5896 6ah0:I
    (5.7Å)
    		 117 GO:0017070 (F) U6 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005687 (C) U4 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00003F07BD RF00015 Homo
    sapiens
    9606    		 30315277
    s37    		 Assembly1
    rna:F:1~107 1~17,21~22,55~64
    5897 6ah3:A
    (3.48Å)
    		 369 EC:3.1.26.5 ribonuclease P
    GO:0004526 (F) ribonuclease P activity
    GO:0008033 (P) tRNA processing
    GO:0034965 (P) intronic box C/D snoRNA...
    GO:0030677 (C) ribonuclease P complex
    GO:0005655 (C) nucleolar ribonuclease ...    		 URS0000413C32 RF00009 Saccharomyces
    cerevisiae
    S288C
    559292    		 30262633 Assembly1
    rna:T:-3~76 91,204,245,251,300,313~314,344
    ,351
    5898 6ah3:T
    (3.48Å)
    		 80 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000D77911 RF00005 Saccharomyces
    cerevisiae
    S288C
    559292    		 30262633 Assembly1
    rna:A:1~369 -2~1,17,19,55~56,65,73
    5899 6ahd:B
    (3.8Å)
    		 115 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000075BAAE RF00020 Homo
    sapiens
    9606    		 30315277
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390    		 Assembly1
    rna:G:-12~163 40~44
    5900 6ahd:F
    (3.8Å)
    		 94 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00001EC8D7 RF00026 Homo
    sapiens
    9606    		 30315277
    1334

    1124

    s59

    M021_0.6    		 Assembly1
    rna:I:1~144 50~51,53~65,67~75
    rna:G:-12~163 29~36,38~44
    rna:H:3~184 85~95
    << < 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 > >>
    Go to page

    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.