SEQ2FUN

FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    6401 6gz4:B1
    (3.6Å)
    		 1708 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60B9C RF01960
    RF01959
    RF00177    		 Oryctolagus
    cuniculus
    9986    		 30517857 Assembly1
    rna:A2:1~5028 677~678,970,1028~1030,1052,118
    0,1708~1710,1719~1721,1731,181
    5~1816,1824,1826~1827,1849
    rna:Bv:1~76 1247~1248,1701
    rna:Bx:23~33 1207,1698,1701~1702,1704,1825,
    1830
    rna:Bw:1~76 1057,1248,1524,1639~1641
    6402 6gz4:Bv
    (3.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS0000868532 RF00005 Oryctolagus
    cuniculus
    9986    		 30517857 Assembly1
    rna:A2:1~5028 74~76
    rna:Bx:23~33 34~37
    rna:B1:1~1869 33~34
    6403 6gz4:Bw
    (3.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000028779A RF00005 Oryctolagus
    cuniculus
    9986    		 30517857 Assembly1
    rna:A2:1~5028 3~4,19,56,70~71,75~76
    rna:Bx:23~33 34~37
    rna:B1:1~1869 30~31,34,37,41
    6404 6gz4:Bx
    (3.6Å)
    		 11 N/A N/A N/A Oryctolagus
    cuniculus
    9986    		 30517857 Assembly1
    rna:Bv:1~76 26~28
    rna:Bw:1~76 23~25
    rna:B1:1~1869 25,27~29,32~33
    6405 6gz5:A2
    (3.5Å)
    		 3612 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60BB6 RF02540
    RF02543    		 Oryctolagus
    cuniculus
    9986    		 30517857 Assembly1
    rna:Bv:1~76 3740~3741,4158~4160,4162,4358~
    4359,4493,4510
    rna:Bw:1~76 3685~3686,3709~3711,3929,4016,
    4303~4304,4332~4333
    rna:B1:1~1869 1545~1547,2846,2863,3599,3665,
    3681,3683,3730~3732,3734,3737~
    3738,3765~3767,3777~3778,3805
    rna:A3:1~157 1~22,58,144,335~342,344~346,35
    0~351,354,356,373~374,409~424,
    1287~1288,1316~1317,2287~2288,
    2291~2292,2312,2423,2472,2487,
    2521~2523,2757~2758,3862,4124
    rna:A4:1~119 1718~1720,1723,1774,1776~1777,
    1875,1890,1917,1923
    6406 6gz5:A3
    (3.5Å)
    		 157 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000005270 RF00002 Oryctolagus
    cuniculus
    9986    		 30517857 Assembly1
    rna:A2:1~5028 4~22,24~37,40~41,53,103,108,11
    0,112~113,115,123,125~127,138~
    139,141~157
    6407 6gz5:A4
    (3.5Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000064027A RF00001 Oryctolagus
    cuniculus
    9986    		 30517857 Assembly1
    rna:A2:1~5028 77~79,84,88,98,100~101,103
    6408 6gz5:B1
    (3.5Å)
    		 1708 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60B9C RF01960
    RF01959
    RF00177    		 Oryctolagus
    cuniculus
    9986    		 30517857 Assembly1
    rna:A2:1~5028 368,677~678,970,1028~1030,1052
    ,1180,1708~1710,1719~1721,1731
    ,1815~1816,1824,1826~1828,1849
    rna:Bv:1~76 1058,1248,1639~1641,1701
    rna:Bx:23~33 961,1207,1698,1701~1702,1825,1
    830
    6409 6gz5:Bv
    (3.5Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS0000868532 RF00005 Oryctolagus
    cuniculus
    9986    		 30517857 Assembly1
    rna:A2:1~5028 12,25,74~76
    rna:Bx:23~33 34~37
    rna:B1:1~1869 31,34,38,41
    6410 6gz5:Bw
    (3.5Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000028779A RF00005 Saccharomyces
    cerevisiae
    4932    		 30517857 Assembly1
    rna:A2:1~5028 3~4,19,56,71,75~76
    rna:Bx:23~33 34~36
    6411 6gz5:Bx
    (3.5Å)
    		 11 N/A N/A N/A Zindervirus
    SP6
    194966    		 30517857 Assembly1
    rna:Bv:1~76 26~28
    rna:Bw:1~76 23~25
    rna:B1:1~1869 23,26~29,32~33
    6412 6gzq:A1
    (3.28Å)
    		 2912 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E23D RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 30301898 Assembly1
    rna:B1:1~122 910~912,966~967
    rna:A2:5~1510 1752,1870,1881,1936~1937,1943~
    1944,1971~1972,1983~1984
    6413 6gzq:A2
    (3.28Å)
    		 1506 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEDF RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 30301898 Assembly1
    rna:A1:1~2913 685,767,1389~1390,1400,1411,14
    60~1461,1469~1472,1494
    6414 6gzq:B1
    (3.28Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 30301898 Assembly1
    rna:A1:1~2913 80~82,99~100,102~103
    6415 6gzx:A1
    (4.57Å)
    		 2912 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E23D RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 30301898 Assembly1
    rna:B1:1~122 910,912,963,966~968,1005
    rna:A3:5~1510 1750,1752~1753,1881,1936~1937,
    1940,1943~1944,1971,1983~1985
    6416 6gzx:A2
    (4.57Å)
    		 2912 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E23D RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 30301898 Assembly1
    rna:B2:1~122 910,963,965~967,998,1005
    rna:A4:5~1510 1750,1752~1753,1881,1936~1937,
    1940,1943~1944,1983~1985
    6417 6gzx:A3
    (4.57Å)
    		 1506 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEDF RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 30301898 Assembly1
    rna:A1:1~2913 685,1390~1391,1400,1411~1412,1
    451,1460~1462,1469~1472,1494
    6418 6gzx:A4
    (4.57Å)
    		 1506 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEDF RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 30301898 Assembly1
    rna:A2:1~2913 685,1390~1391,1411~1412,1451,1
    460~1462,1469~1473,1494
    6419 6gzx:B1
    (4.57Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 30301898 Assembly1
    rna:A1:1~2913 81~83,92,99~100,103
    6420 6gzx:B2
    (4.57Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 30301898 Assembly1
    rna:A2:1~2913 81~82,84,92,99~100,103
    6421 6gzz:A1
    (4.13Å)
    		 2912 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E23D RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 30301898 Assembly1
    rna:B1:1~122 910~912,965~967
    rna:A3:5~1510 1881,1972
    6422 6gzz:A2
    (4.13Å)
    		 2912 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E23D RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 30301898 Assembly1
    rna:B2:1~122 910~913,963,965~967,1005
    6423 6gzz:A3
    (4.13Å)
    		 1506 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEDF RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 30301898 Assembly1
    rna:A1:1~2913 685,1460~1461
    6424 6gzz:B1
    (4.13Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 30301898 Assembly1
    rna:A1:1~2913 80~83,99~101,103
    6425 6gzz:B2
    (4.13Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005AB4A7 RF00001 Thermus
    thermophilus
    HB8
    300852    		 30301898 Assembly1
    rna:A2:1~2913 80~83,93,99~101,103~104
    6426 6h4n:A
    (3.0Å)
    		 2900 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000B21DDD RF02540
    RF02541    		 Escherichia
    coli
    BW25113
    679895    		 30177741 Assembly1
    rna:a:2~1535 1700~1703,1837,1846,1848,1912~
    1913,1916,1919~1920,1947~1948,
    1959~1961
    rna:B:1~120 861~863,915,917~919,958
    rna:w:1~76 1851~1852,2112,2168,2394,2421~
    2422,2432
    6427 6h4n:B
    (3.0Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00008116C5 RF00001 Escherichia
    coli
    BW25113
    679895    		 30177741 Assembly1
    rna:A:1~2903 78~81,89,97,99~100
    6428 6h4n:a
    (3.0Å)
    		 1534 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000D7793B RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    BW25113
    679895    		 30177741 Assembly1
    rna:A:1~2903 702,784,899,1407~1408,1418,142
    9,1473~1475,1483~1484,1492~149
    6,1517
    6429 6h4n:w
    (3.0Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000D77936 RF00005 Escherichia
    coli
    BW25113
    679895    		 30177741 Assembly1
    rna:a:2~1535 34~35
    rna:A:1~2903 19,56,71,75~76
    6430 6h58:A
    (7.9Å)
    		 2900 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000B21DDD RF02540
    RF02541    		 Escherichia
    coli
    BW25113
    679895    		 30177741 Assembly1
    rna:B:1~120 861~863,915,917~919,958
    rna:a:2~1540 1700~1703,1837,1846,1848,1912~
    1913,1916,1919~1920,1947~1948,
    1959~1961
    rna:w:1~76 1851~1852,2112,2168,2180~2181,
    2394,2421~2422,2432
    6431 6h58:AA
    (7.9Å)
    		 2900 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000B21DDD RF02540 Escherichia
    coli
    BW25113
    679895    		 30177741 Assembly1
    rna:BB:1~120 861~863,915,917~919,958
    rna:aa:2~1540 1700~1703,1837,1846,1848,1912~
    1913,1916,1919~1920,1947~1948,
    1959~1961
    rna:ww:1~76 1851~1852,2112,2168,2180,2394,
    2421~2422,2432
    6432 6h58:B
    (7.9Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00008116C5 RF00001 Escherichia
    coli
    BW25113
    679895    		 30177741 Assembly1
    rna:A:1~2903 78~81,89,97,99~100
    6433 6h58:BB
    (7.9Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00008116C5 RF00001 Escherichia
    coli
    BW25113
    679895    		 30177741 Assembly1
    rna:AA:1~2903 78~81,89,97,99~100
    6434 6h58:a
    (7.9Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    BW25113
    679895    		 30177741 Assembly1
    rna:A:1~2903 702,784,899,1407~1408,1418,142
    9,1473~1475,1483~1484,1492~149
    6,1517
    6435 6h58:aa
    (7.9Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    BW25113
    679895    		 30177741 Assembly1
    rna:AA:1~2903 702,784,899,1407~1408,1418,142
    9,1473~1475,1483~1484,1492~149
    6,1517
    6436 6h58:w
    (7.9Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000D77936 RF00005 Escherichia
    coli
    BW25113
    679895    		 30177741 Assembly1
    rna:A:1~2903 117,19,56,71,75~76
    rna:a:2~1540 34~35
    6437 6h58:ww
    (7.9Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000D77936 RF00005 Escherichia
    coli
    BW25113
    679895    		 30177741 Assembly1
    rna:AA:1~2903 117,19,56,71,75~76
    rna:aa:2~1540 34~35
    6438 6h61:X
    (4.02Å)
    		 15 N/A URS0000E60B84 N/A Cystovirus
    phi6
    10879    		 30449722 Assembly1
    rna:Y:1~15 1~15
    6439 6h61:Y
    (4.02Å)
    		 15 N/A URS0000E60BC3 N/A Cystovirus
    phi6
    10879    		 30449722 Assembly1
    rna:X:1~15 1~15
    6440 6h66:X
    (4.16Å)
    		 15 N/A URS0000E60B84 N/A Cystovirus
    phi6
    10879    		 30449722 Assembly1
    rna:Y:1~15 1~15
    6441 6h66:Y
    (4.16Å)
    		 15 N/A URS0000E60BC3 N/A Cystovirus
    phi6
    10879    		 30449722 Assembly1
    rna:X:1~15 1~15
    6442 6ha1:A
    (3.1Å)
    		 2887 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005906D8 RF02540
    RF02541
    RF00002    		 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 30126986 Assembly1
    rna:B:3~114 908~910,962~965,1004
    rna:a:8~1540 1745~1749,1861,1866,1875,1877,
    1924,1941~1942,1944~1945,1948~
    1949,1976~1978,1988~1990
    rna:x:1~87 936,1936,1938,1951~1952,2280~2
    282,2479~2480,2614,2630~2631
    6443 6ha1:B
    (3.1Å)
    		 112 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000BC467F RF00001 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 30126986 Assembly1
    rna:A:2~2926 76~78,87~88,95,97~98
    6444 6ha1:a
    (3.1Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00007878BA RF00177
    RF01959
    RF01960    		 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 30126986 Assembly1
    rna:A:2~2926 711,793,909,1416~1418,1427,143
    8,1483~1485,1493~1494,1502,150
    4~1506,1527
    rna:7:25~27 936,1409~1410,1412,1508
    rna:x:1~87 799,976,1238~1239,1347~1349,14
    09
    6445 6ha1:x
    (3.1Å)
    		 87 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00004630EA RF00005 Escherichia
    coli
    562    		 30126986 Assembly1
    rna:A:2~2926 12,25~26,49,85~87
    rna:7:25~27 35~38
    rna:a:8~1540 31~33,35,39,41~42
    6446 6ha8:A
    (3.5Å)
    		 2887 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005906D8 RF02540
    RF02541
    RF00002    		 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 30126986 Assembly1
    rna:B:3~114 908~910,962,964~965,1004
    rna:a:8~1540 1746,1748,1941~1942,1944~1945,
    1948~1949,1976~1977,1988~1989
    rna:x:1~76 1936~1937,1951~1953
    6447 6ha8:B
    (3.5Å)
    		 112 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000BC467F RF00001 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 30126986 Assembly1
    rna:A:2~2926 76~79,87,95,97~98
    6448 6ha8:a
    (3.5Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00007878BA RF00177
    RF01959
    RF01960    		 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 30126986 Assembly1
    rna:A:2~2926 1416~1418,1427,1438,1484,1493~
    1494,1502,1504~1506,1527
    rna:7:25~27 936,1409,1508,1515
    rna:x:1~76 799,976,1238~1239,1347~1349,14
    09
    6449 6ha8:x
    (3.5Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000D77907 RF00005 Escherichia
    coli
    562    		 30126986 Assembly1
    rna:A:2~2926 12~13,24~25
    rna:7:25~27 34~37
    rna:a:8~1540 30~32,34,38~41
    6450 6hak:E
    (3.95Å)
    		 20 N/A URS0000E60B74 N/A Human
    immunodeficiency
    virus
    1
    11676    		 30902895 Assembly2
    rna:F:60~76 181~199
    6451 6hak:F
    (3.95Å)
    		 17 N/A URS0000E60B8B N/A Homo
    sapiens
    9606    		 30902895 Assembly2
    rna:E:180~199 60~76
    6452 6hak:P
    (3.95Å)
    		 17 N/A URS0000E60B8B N/A Homo
    sapiens
    9606    		 30902895 Assembly1
    rna:T:180~199 60~76
    6453 6hak:T
    (3.95Å)
    		 20 N/A URS0000E60B74 N/A Human
    immunodeficiency
    virus
    1
    11676    		 30902895 Assembly1
    rna:P:60~76 181~199
    6454 6hbt:A
    (1.66Å)
    		 18 N/A URS0000BC4678 N/A Gloeobacter
    violaceus
    33072    		 30609994 Assembly1
    rna:A-2:1~18 8~13
    6455 6hcf:23
    (3.9Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS0000868530 RF00005 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:A1:1~1869 32,34,40~41
    rna:52:1~5069 74~76
    rna:w3:37~59 34~37
    6456 6hcf:52
    (3.9Å)
    		 3634 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000D77958 RF02540
    RF02543    		 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:A1:1~1869 1564,3709,3712,3759,3763,3766~
    3767,3794,3796,3807
    rna:72:1~120 1736~1738,1741,1792,1795~1796,
    1909,1936
    rna:82:1~156 2~12,14~22,58,339,342,344~348,
    351~352,356~357,360,362,379~38
    0,415~419,421~430,1304~1305,13
    33~1334,1371,2308,2313,2333~23
    34,2444,2487,2508,2542,2544,27
    78~2779
    rna:23:1~76 4197~4198,4531,4548
    6457 6hcf:72
    (3.9Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:52:1~5069 77~80,84,101,104
    6458 6hcf:82
    (3.9Å)
    		 151 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B2C76 RF00002 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:52:1~5069 4~13,15~22,24~29,31~33,35~37,4
    0,53,108,112~113,126,128,138~1
    49,151~156
    6459 6hcf:A1
    (3.9Å)
    		 1732 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7639A RF01960
    RF01959
    RF00177    		 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:52:1~5069 970,1029,1709~1710,1720,1815~1
    816,1826~1828,1849
    rna:23:1~76 1640~1641,1701
    rna:w3:37~59 626,630,961,1207,1698,1702,182
    5,1830
    6460 6hcf:w3
    (3.9Å)
    		 23 N/A N/A N/A Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:A1:1~1869 43,45~46,48,50,52~53,56
    rna:23:1~76 46~48
    6461 6hcj:33
    (3.8Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000326EAC RF00005 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:51:1~5069 18,55,75
    rna:A2:1~1869 29,31,33,37,39~40
    rna:v3:20~41 33~36
    6462 6hcj:51
    (3.8Å)
    		 3635 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000D77913 RF02540
    RF02543    		 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:71:1~120 1736~1738,1741,1795,1909,1936
    rna:81:1~156 3~7,9~22,58,342,344~348,351~35
    2,357,360,362,380,415~419,421~
    423,425~427,430,1305,1333,1371
    ,2308,2334,2355,2444,2487,2493
    ~2494,2542,2544,2778~2779
    rna:A2:1~1869 1563~1564,3629,3759,3763~3764,
    3766,3796,3806~3808
    rna:q3:1~76 3788~3789,4255,4453,4529~4531
    rna:33:1~75 3958,4046,4341~4342,4370~4371
    6463 6hcj:71
    (3.8Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:51:1~5069 77~79,84,98,101,103
    6464 6hcj:81
    (3.8Å)
    		 151 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B2C76 RF00002 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:51:1~5069 3~5,7~13,15~22,24~37,40,53,108
    ,112~113,124,126~128,139,141~1
    49,152~155
    6465 6hcj:A2
    (3.8Å)
    		 1740 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000D7790F RF01960
    RF01959
    RF00177    		 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:51:1~5069 1029~1030,1708~1710,1719~1721,
    1815
    rna:q3:1~76 626,1331,1825
    rna:v3:20~41 626,961
    rna:33:1~75 1058,1639~1641,1701
    6466 6hcj:q3
    (3.8Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E2D5 RF00005 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:51:1~5069 56,72~73,76
    rna:A2:1~1869 34~37
    rna:v3:20~41 34~37
    6467 6hcj:v3
    (3.8Å)
    		 22 N/A N/A N/A Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:A2:1~1869 26,29,31,34
    rna:q3:1~76 32~34
    rna:33:1~75 29~31
    6468 6hcm:23
    (6.8Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS0000868530 RF00005 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:A1:1~1869 32,34,40~41
    rna:52:1~5069 74~76
    rna:w3:37~59 34~37
    6469 6hcm:52
    (6.8Å)
    		 3634 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000D77958 RF02540
    RF02543    		 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:A1:1~1869 1564,3709,3712,3759,3763,3766~
    3767,3794,3796,3807
    rna:72:1~120 1736~1738,1741,1792,1795~1796,
    1909,1936
    rna:82:1~156 2~12,14~22,58,339,342,344~348,
    351~352,356~357,360,362,379~38
    0,415~419,421~430,1304~1305,13
    33~1334,1371,2308,2313,2333~23
    34,2444,2487,2508,2542,2544,27
    78~2779
    rna:23:1~76 4197~4198,4531,4548
    6470 6hcm:72
    (6.8Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:52:1~5069 77~80,84,101,104
    6471 6hcm:82
    (6.8Å)
    		 151 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B2C76 RF00002 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:52:1~5069 4~13,15~22,24~29,31~33,35~37,4
    0,53,108,112~113,126,128,138~1
    49,151~156
    6472 6hcm:A1
    (6.8Å)
    		 1732 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7639A RF01960
    RF01959
    RF00177    		 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:52:1~5069 970,1029,1709~1710,1720,1815~1
    816,1826~1828,1849
    rna:23:1~76 1640~1641,1701
    rna:w3:37~59 626,630,961,1207,1698,1702,182
    5,1830
    6473 6hcm:w3
    (6.8Å)
    		 23 N/A N/A N/A Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:A1:1~1869 43,45~46,48,50,52~53,56
    rna:23:1~76 46~48
    6474 6hcq:33
    (6.5Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000326EAC RF00005 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:51:1~5069 18,55,75
    rna:A2:1~1869 29,31,33,37,39~40
    rna:v3:20~41 33~36
    6475 6hcq:51
    (6.5Å)
    		 3635 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000D77913 RF02540
    RF02543    		 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:71:1~120 1736~1739,1741,1795,1909,1936
    rna:81:1~156 3~7,9~22,58,342,344~348,351~35
    2,357,360,362,380,415~419,421~
    423,425~427,430,1305,1333,1371
    ,2308,2334,2355,2444,2487,2493
    ~2494,2542,2544,2778~2779
    rna:A2:1~1869 1563~1564,3629,3759,3763~3764,
    3766,3796,3806~3808
    rna:q3:1~76 3788~3789,4255,4453,4529~4531
    rna:33:1~75 3958,4046,4341~4342,4370~4371
    6476 6hcq:71
    (6.5Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:51:1~5069 77~79,84,101~104
    6477 6hcq:81
    (6.5Å)
    		 151 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B2C76 RF00002 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:51:1~5069 3~5,7~13,15~22,24~37,40,53,108
    ,112~113,124,126~128,139,141~1
    49,152~155
    6478 6hcq:A2
    (6.5Å)
    		 1740 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000D7790F RF01960
    RF01959
    RF00177    		 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:51:1~5069 1029~1030,1708~1710,1719~1721,
    1815
    rna:q3:1~76 626,1331,1825
    rna:v3:20~41 626,961
    rna:33:1~75 1058,1639~1641,1701
    6479 6hcq:q3
    (6.5Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E2D5 RF00005 Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:51:1~5069 56,72~73,76
    rna:A2:1~1869 34~37
    rna:v3:20~41 34~37
    6480 6hcq:v3
    (6.5Å)
    		 22 N/A N/A N/A Oryctolagus
    cuniculus
    9986    		 30293783 Assembly1
    rna:A2:1~1869 26,29,31,34
    rna:q3:1~76 32~34
    rna:33:1~75 29~31
    6481 6hct:A
    (3.091Å)
    		 19 N/A URS0000D7793E N/A Archaeoglobus
    fulgidus
    DSM
    4304
    224325    		 30327333 Assembly1
    rna:B:1~19 1~5,7~19
    6482 6hct:B
    (3.091Å)
    		 19 N/A URS0000D7793E N/A Archaeoglobus
    fulgidus
    DSM
    4304
    224325    		 30327333 Assembly1
    rna:A:1~19 1~5,7~19
    6483 6hct:E
    (3.091Å)
    		 11 N/A URS0000D77940 N/A Archaeoglobus
    fulgidus
    DSM
    4304
    224325    		 30327333 Assembly1
    rna:F:12~19 1~5,7~11
    6484 6hd7:1
    (3.4Å)
    		 3335 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02540
    RF02543    		 Saccharomyces
    cerevisiae
    4932    		 30559462
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:3:1~121 996~998,1052,1054~1056,1170~11
    71,1197,1203
    rna:4:1~158 3~12,14~23,59,143,331,333~337,
    340~346,349,351,368~369,398,40
    4~408,410~419,656~657,691,1394
    ,1398~1399,1419~1420,1441,1530
    ,1585,1618~1619,1830~1831,2386
    ,2585,2994~2995
    rna:A:1~76 2256,2285,2851,2875~2876,2922,
    2924,2942,2952~2954
    rna:B:1~76 2252,2266~2267,2619,2621,2819,
    2971
    6485 6hd7:3
    (3.4Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 30559462 Assembly1
    rna:1:3~3396 79~82,86,90,100~103
    6486 6hd7:4
    (3.4Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 30559462
    441    		 Assembly1
    rna:1:3~3396 1~22,24~31,33,35~37,40,52~53,1
    04,109,112,114~115,125~126,129
    ,137~157
    6487 6hd7:A
    (3.4Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000042DDAB RF00005 Saccharomyces
    cerevisiae
    4932    		 30559462 Assembly1
    rna:1:3~3396 38,64,71,74~76
    6488 6hd7:B
    (3.4Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000009EE82 RF00005 Saccharomyces
    cerevisiae
    4932    		 30559462 Assembly1
    rna:1:3~3396 11~13,74~76
    6489 6hhq:1
    (3.1Å)
    		 3149 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02540
    RF02543    		 Saccharomyces
    cerevisiae
    4932    		 30759226
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:3:1~121 996~998,1052,1054~1056,1156,11
    71,1197,1203
    rna:4:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1398~139
    9,1418~1420,1441,1530,1558,158
    4~1585,1618~1619,1830~1831,238
    6~2387,2585,2994~2995
    rna:A:1~1798 846~848,1935~1936,2125~2126,22
    55~2256,2258~2259,2262~2263,22
    90~2292,2302~2304
    6490 6hhq:3
    (3.1Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 30759226 Assembly1
    rna:1:3~3396 79~82,86,90,100,102~103
    6491 6hhq:4
    (3.1Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 30759226
    441    		 Assembly1
    rna:1:3~3396 1~22,24~33,35~37,40,53~54,104,
    109~110,114~115,125,129,136~15
    2,154~157
    6492 6hhq:A
    (3.1Å)
    		 1781 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000D77925 RF01960
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 30759226
    101

    441

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:1:3~3396 628,913,971~973,1644~1646,1655
    ~1657,1667~1668,1746~1747,1757
    ~1759,1780
    6493 6hhq:AR
    (3.1Å)
    		 3147 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061F377 RF02540
    RF02543    		 Saccharomyces
    cerevisiae
    4932    		 30759226
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly2
    rna:AS:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1203
    rna:AT:1~158 3~23,59,143~144,330~337,339~34
    2,344~346,349,351,368~369,404~
    419,656~657,691,1394~1395,1398
    ~1399,1418~1420,1441,1530,1585
    ,1618~1619,1830~1832,2386,2585
    ,2994~2995
    rna:sR:1~1800 846~848,1935~1936,2125,2205,22
    55~2256,2258~2259,2262~2263,22
    90~2292,2302~2304
    6494 6hhq:AS
    (3.1Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 30759226 Assembly2
    rna:AR:3~3396 79~82,86,90,100,102~104
    6495 6hhq:AT
    (3.1Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 30759226
    441    		 Assembly2
    rna:AR:3~3396 1~13,15~22,24~33,35~37,40,53~5
    4,104,109~110,113~115,126,129,
    136~152,154~157
    6496 6hhq:sR
    (3.1Å)
    		 1783 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2C2D RF01960
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    4932    		 30759226
    101

    441

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly2
    rna:AR:3~3396 628,913,971~973,1644~1646,1655
    ~1657,1667,1746~1747,1757~1759
    ,1780
    6497 6hma:A
    (2.65Å)
    		 2834 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001C3329 RF02540
    RF02541
    RF00002    		 Staphylococcus
    aureus
    1280    		 26464510 Assembly1
    rna:B:1~115 906~908,960,962~963,1002
    6498 6hma:B
    (2.65Å)
    		 115 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000062A7E RF00001 Staphylococcus
    aureus
    1280    		 26464510 Assembly1
    rna:A:3~2920 76~78,87,93,97
    6499 6hmi:A

    		 11 N/A URS0000BC466C N/A Homo
    sapiens
    9606    		 31636429 Assembly1
    rna:B:12~22 1~11
    6500 6hmi:B

    		 11 N/A URS0000BC4661 N/A Homo
    sapiens
    9606    		 31636429 Assembly1
    rna:A:1~11 12~13,15~22
    << < 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.