SEQ2FUN

FURNA
Download all results in tab-seperated text for 16611 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    6701 6m62:6
    (3.2Å)
    		 65 N/A URS000013305B N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 32719344 Assembly1
    rna:1:1~3396 229,232
    6702 6m6s:C
    (1.6Å)
    		 12 N/A URS00021ED8E1 N/A synthetic
    construct
    32630    		 34403472 Assembly1
    rna:D:1~12 1~12
    6703 6m6s:D
    (1.6Å)
    		 12 N/A URS00021ED8E1 N/A synthetic
    construct
    32630    		 34403472 Assembly1
    rna:C:1~12 1~12
    6704 6mdz:C
    (3.4Å)
    		 20 N/A URS000036142B N/A Homo
    sapiens
    9606    		 31353209
    M175_0.6    		 Assembly1
    rna:E:1~23 2~9,12~20
    6705 6mdz:D
    (3.4Å)
    		 14 N/A URS000036142B N/A Homo
    sapiens
    9606    		 31353209
    M175_0.6    		 Assembly2
    rna:F:5~23 2~5,7~9,16
    6706 6mdz:E
    (3.4Å)
    		 23 N/A URS0000EEACEC N/A unidentified
    32644    		 31353209 Assembly1
    rna:C:1~20 2~10,13~20
    6707 6mdz:F
    (3.4Å)
    		 17 N/A URS0000EEACEC N/A unidentified
    32644    		 31353209 Assembly2
    rna:D:1~16 6,13~20
    6708 6mfn:E
    (2.5Å)
    		 10 N/A URS0000EEAD2B N/A synthetic
    construct
    32630    		 31353209 Assembly1
    rna:C:1~9 14~19
    6709 6mfr:C
    (3.6Å)
    		 20 N/A URS000036142B N/A Homo
    sapiens
    9606    		 31353209
    M175_0.6    		 Assembly1
    rna:E:2~23 2~8,12~20
    6710 6mfr:D
    (3.6Å)
    		 14 N/A URS000036142B N/A Homo
    sapiens
    9606    		 31353209
    M175_0.6    		 Assembly2
    rna:F:6~23 2~5,7~9,15~16
    6711 6mfr:E
    (3.6Å)
    		 22 N/A URS0000EEAD18 N/A unidentified
    32644    		 31353209 Assembly1
    rna:C:1~20 3~10,14~20
    6712 6mfr:F
    (3.6Å)
    		 16 N/A URS0000EEAD18 N/A unidentified
    32644    		 31353209 Assembly2
    rna:D:1~16 6~7,13~20
    6713 6mkn:A
    (3.46Å)
    		 1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60B6E RF00177 Thermus
    thermophilus
    HB8
    300852    		 31945376 Assembly1
    rna:X:30~40 530,1054,1493
    rna:W:1~4 530,1054,1196,1397,1492~1493
    6714 6mkn:X
    (3.46Å)
    		 11 N/A URS000080E266 N/A Escherichia
    coli
    562    		 31945376 Assembly1
    rna:A:5~1544 34~37
    rna:W:1~4 34~37
    6715 6mpf:A
    (3.33Å)
    		 1508 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60B88 RF00177 Thermus
    thermophilus
    HB8
    300852    		 31945376 Assembly1
    rna:W:1~4 513,1379,1469~1470
    rna:X:30~40 513,1036,1470
    6716 6mpf:X
    (3.33Å)
    		 11 N/A URS000080E223 N/A Escherichia
    coli
    562    		 31945376 Assembly1
    rna:A:5~1516 34~37
    rna:W:1~4 34~37
    6717 6mpi:A
    (3.33Å)
    		 1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60B6E RF00177 Thermus
    thermophilus
    HB8
    300852    		 31945376 Assembly1
    rna:X:30~40 530,1054,1493
    rna:W:1~4 530,1397,1492~1493
    6718 6mpi:X
    (3.33Å)
    		 11 N/A URS000080E266 N/A Escherichia
    coli
    562    		 31945376 Assembly1
    rna:A:5~1544 34~37
    rna:W:1~4 34~37
    6719 6mtb:2
    (3.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci... URS0000868530 RF00005 Oryctolagus
    cuniculus
    9986    		 30355441 Assembly1
    rna:1:42~48 34~37
    rna:5:1~5069 11~13,24~25,74~76
    rna:9:1~1869 30~32,34,38,40~41
    6720 6mtb:4
    (3.6Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000086855F RF00005 Oryctolagus
    cuniculus
    9986    		 30355441 Assembly1
    rna:5:1~5069 18~19,56~57
    6721 6mtb:5
    (3.6Å)
    		 3597 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60BB9 RF02543 Oryctolagus
    cuniculus
    9986    		 30355441 Assembly1
    rna:2:1~76 3756,3769~3771,3909,4196~4197,
    4397,4547~4548
    rna:4:1~76 3958,4047
    rna:7:1~120 1736~1738,1741,1792~1796,1894,
    1909,1936,1942
    rna:8:1~156 2~22,58,146~147,339,342~348,35
    0~353,356~357,360,362,379~380,
    415~430,1304~1305,1333~1334,13
    71,2308~2309,2312~2313,2333~23
    34,2355~2356,2444,2487,2508~25
    09,2542~2544,2778~2780,4162
    rna:9:1~1869 1563~1565,2884,3629,3699~3700,
    3711,3759~3760,3766~3767,3794~
    3796,3806~3807,3834
    6722 6mtb:7
    (3.6Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 30355441 Assembly1
    rna:5:1~5069 77~80,84,88,98~104
    6723 6mtb:8
    (3.6Å)
    		 151 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000D56C3A RF00002 Oryctolagus
    cuniculus
    9986    		 30355441 Assembly1
    rna:5:1~5069 3~22,24~37,40,53,103,108,111~1
    13,115,124,126~128,137~156
    6724 6mtb:9
    (3.6Å)
    		 1698 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60B90 RF01960 Oryctolagus
    cuniculus
    9986    		 30355441 Assembly1
    rna:1:42~48 961,1207,1701~1702,1704,1830,1
    837
    rna:2:1~76 1058,1248,1524,1639~1641,1701
    rna:5:1~5069 677,970,1028~1029,1051~1052,11
    80,1708~1709,1719~1721,1731,18
    15~1816,1825~1828,1849
    6725 6mtc:4
    (3.4Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000086855F RF00005 Oryctolagus
    cuniculus
    9986    		 30355441 Assembly1
    rna:5:1~5069 18~19,56~57
    6726 6mtc:5
    (3.4Å)
    		 3597 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60BB9 RF02543 Oryctolagus
    cuniculus
    9986    		 30355441 Assembly1
    rna:4:1~76 3958,4047
    rna:7:1~120 1736~1738,1741,1792~1796,1894,
    1909,1936,1942
    rna:8:1~156 1~22,58,146~147,339,342~348,35
    0~353,356~357,360,362,379~380,
    415~430,1304~1305,1333~1334,13
    71,2308~2309,2312~2313,2333~23
    34,2355~2356,2444,2472,2486~24
    87,2508~2509,2542~2544,2778~27
    80,3890
    rna:9:1~1869 1563~1565,2884,3629,3695,3699~
    3700,3711,3759~3761,3763,3766~
    3767,3794~3796,3806~3807,3834
    6727 6mtc:7
    (3.4Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 30355441 Assembly1
    rna:5:1~5069 77~80,84,88,98,100~101,103
    6728 6mtc:8
    (3.4Å)
    		 151 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000D56C3A RF00002 Oryctolagus
    cuniculus
    9986    		 30355441 Assembly1
    rna:5:1~5069 3~22,24~37,40,53,103,108,111~1
    13,115,124~128,136~149,151~156
    6729 6mtc:9
    (3.4Å)
    		 1698 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60B90 RF01960 Oryctolagus
    cuniculus
    9986    		 30355441 Assembly1
    rna:5:1~5069 677~678,970,1028~1029,1051~105
    2,1180,1708~1710,1719~1721,173
    1,1815~1816,1825~1828,1849
    6730 6mtd:5
    (3.3Å)
    		 3597 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60BB9 RF02543 Oryctolagus
    cuniculus
    9986    		 30355441 Assembly1
    rna:7:1~120 1736~1738,1741,1792,1794~1796,
    1894,1909,1936,1942
    rna:8:1~156 1~22,58,146,339,341~348,350~35
    3,356~357,360,362,379~380,415~
    430,1304~1305,1333~1334,1371,2
    308~2309,2312~2313,2333~2334,2
    355,2444,2472,2487,2508~2509,2
    542~2544,2778~2779
    rna:9:1~1869 1563~1565,2884~2885,3629,3700,
    3711,3759~3760,3763,3766~3767,
    3794~3796,3806~3808
    6731 6mtd:7
    (3.3Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 30355441 Assembly1
    rna:5:1~5069 77~80,84,88,98,100~101,103~104
    6732 6mtd:8
    (3.3Å)
    		 151 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000D56C3A RF00002 Oryctolagus
    cuniculus
    9986    		 30355441 Assembly1
    rna:5:1~5069 4~22,24~37,40~41,53,103,108,11
    2~113,115,124,126~128,136~149,
    151~156
    6733 6mtd:9
    (3.3Å)
    		 1698 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60BB4 RF01960 Oryctolagus
    cuniculus
    9986    		 30355441 Assembly1
    rna:5:1~5069 677~678,970,1028~1029,1052,118
    0,1708~1710,1719~1721,1731,181
    5~1816,1824~1828,1849
    6734 6mte:5
    (3.4Å)
    		 3597 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60BB9 RF02543 Oryctolagus
    cuniculus
    9986    		 30355441 Assembly1
    rna:7:1~120 1736~1739,1741,1792~1796,1894,
    1909,1936,1942
    rna:8:1~156 1~22,58,146~147,339,341~348,35
    0~353,356~357,360,362,379~380,
    415~430,1305,1333~1334,1371,23
    08~2309,2333~2334,2355~2356,24
    44,2472,2487,2493,2508~2509,25
    44,2778~2779,4162
    rna:9:1~1869 1563~1565,2884,3629,3709,3759~
    3760,3763,3766~3767,3794~3796,
    3806~3808,3834
    6735 6mte:7
    (3.4Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Oryctolagus
    cuniculus
    9986    		 30355441 Assembly1
    rna:5:1~5069 77~80,84,88,98,100~104
    6736 6mte:8
    (3.4Å)
    		 151 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000D56C3A RF00002 Oryctolagus
    cuniculus
    9986    		 30355441 Assembly1
    rna:5:1~5069 4~22,24~37,40,53,103,108,112~1
    13,115,124,126~127,135~136,138
    ~156
    6737 6mte:9
    (3.4Å)
    		 1698 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60B90 RF01960 Oryctolagus
    cuniculus
    9986    		 30355441 Assembly1
    rna:5:1~5069 677,970,1028~1030,1708~1710,17
    19~1721,1731,1815~1816,1826~18
    28,1849
    6738 6mur:G
    (3.1Å)
    		 27 N/A URS0000E60B95 N/A Thermococcus
    onnurineus
    342948    		 30503773 Assembly1
    rna:H:17~35 10~13,15~19,21~27
    6739 6mur:H
    (3.1Å)
    		 19 N/A URS0000E60BAF N/A Thermococcus
    onnurineus
    342948    		 30503773 Assembly1
    rna:G:1~27 17~24,26~34
    6740 6mus:G
    (3.6Å)
    		 33 N/A URS0000E60B95 N/A Thermococcus
    onnurineus
    342948    		 30503773 Assembly1
    rna:H:11~35 10~13,15~19,21~25,27~28,30~33
    6741 6mus:H
    (3.6Å)
    		 25 N/A URS0000E60BAF N/A Thermococcus
    onnurineus
    342948    		 30503773 Assembly1
    rna:G:1~33 11~15,17,19~28,30~34
    6742 6mut:G
    (3.1Å)
    		 20 N/A URS0000E60B95 N/A Thermococcus
    onnurineus
    342948    		 30503773 Assembly1
    rna:H:25~43 4~7,9~13,15~19
    6743 6mut:H
    (3.1Å)
    		 19 N/A URS0000E60BC7 N/A Thermococcus
    onnurineus
    342948    		 30503773 Assembly1
    rna:G:1~20 25~35,37~40
    6744 6mwn:A
    (2.838Å)
    		 92 GO:0043022 (F) ribosome binding URS0000EEAD08 RF00228 Hepatovirus
    A
    12092    		 31399592 Assembly1
    rna:B:593~684 625~626
    6745 6n1d:A16S
    (3.2Å)
    		 1517 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60BAE RF00177 Thermus
    thermophilus
    HB27
    262724    		 30936299 Assembly1
    rna:A23S:6~2897 702,783~784,899~900,1407~1409,
    1418~1419,1429,1473~1474,1483~
    1484,1492,1494~1496,1517
    rna:AMRN:6~18 926,1503,1505,1507,1531~1532,1
    534,1536~1539
    rna:APTN:1~76 966,1229,1338~1340
    6746 6n1d:A23S
    (3.2Å)
    		 2879 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60B6D RF02541 Thermus
    thermophilus
    HB27
    262724    		 30936299 Assembly1
    rna:A16S:3~1542 1701~1703,1831~1832,1836~1837,
    1846,1848,1912~1915,1919~1920,
    1947~1949,1959~1960
    rna:A5S:1~118 861~864,917~919,958
    rna:APTN:1~76 1851,1892~1893,2112,2181,2394,
    2421~2422,2432
    6747 6n1d:A5S
    (3.2Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE2B RF00001 Thermus
    thermophilus
    HB27
    262724    		 30936299 Assembly1
    rna:A23S:6~2897 78~81,89B,96~97,99~100
    6748 6n1d:AMRN
    (3.2Å)
    		 10 N/A N/A N/A synthetic
    construct
    32630    		 30936299 Assembly1
    rna:A16S:3~1542 6~10,14~15,17
    rna:APTN:1~76 16~17
    6749 6n1d:APTN
    (3.2Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00003179F7 RF00005 Escherichia
    coli
    562    		 30936299 Assembly1
    rna:A16S:3~1542 30~32,34,40~41
    rna:A23S:6~2897 4,17,19,70~71,76
    rna:AMRN:6~18 35,37
    6750 6n1d:B16S
    (3.2Å)
    		 1517 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60BAE RF00177 Thermus
    thermophilus
    HB27
    262724    		 30936299 Assembly2
    rna:B23S:6~2897 702,783,899,1407~1409,1418,142
    9,1440C,1473,1475,1483~1484,14
    91,1494~1496,1517
    rna:BATN:1~76 790,954,1400
    rna:BMRN:4~20 926~927,1400~1401,1498,1503,15
    05,1532,1534~1540,1542
    rna:BPTN:1~76 789,966,1338~1340
    6751 6n1d:B23S
    (3.2Å)
    		 2879 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60B6D RF02541 Thermus
    thermophilus
    HB27
    262724    		 30936299 Assembly2
    rna:B16S:3~1542 1689,1702~1703,1831~1832,1836,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1948,1959~1960,
    2863~2864
    rna:B5S:1~118 861~864,917~919,958,1027
    rna:BATN:1~76 1907~1908,1922~1923,2251~2253,
    2255,2450,2594,2601~2602
    rna:BPTN:1~76 1850~1851,1891~1893,2112,2169,
    2394~2395,2421~2422,2432
    6752 6n1d:B5S
    (3.2Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE2B RF00001 Thermus
    thermophilus
    HB27
    262724    		 30936299 Assembly2
    rna:B23S:6~2897 78~81,88,89B,97,99~101
    6753 6n1d:BATN
    (3.2Å)
    		 85 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002D9DE2 RF00005 Escherichia
    coli
    562    		 30936299 Assembly2
    rna:B16S:3~1542 30,34,38
    rna:B23S:6~2897 12~13,23,72,74~76
    rna:BMRN:4~20 34~37
    rna:BPTN:1~76 32,38,41~42
    6754 6n1d:BMRN
    (3.2Å)
    		 17 N/A N/A N/A synthetic
    construct
    32630    		 30936299 Assembly2
    rna:B16S:3~1542 4~11,13~15,17~20
    rna:BATN:1~76 18~20
    6755 6n1d:BPTN
    (3.2Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00003179F7 RF00005 Escherichia
    coli
    562    		 30936299 Assembly2
    rna:B16S:3~1542 31~32,34,37,40~41
    rna:B23S:6~2897 4,19,56,70~71,76
    rna:BATN:1~76 28~29,35~36
    6756 6n4o:C
    (2.899Å)
    		 19 N/A URS000036142B N/A Homo
    sapiens
    9606    		 31268608 Assembly1
    rna:D:1~16 2~9,12~16
    6757 6n4o:D
    (2.899Å)
    		 14 N/A URS0000E60B76 N/A synthetic
    construct
    32630    		 31268608 Assembly1
    rna:C:1~21 1~5,9~15
    6758 6n7p:R
    (3.6Å)
    		 558 GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0000398 (P) mRNA splicing, via spli...
    GO:0005685 (C) U1 snRNP
    GO:0000243 (C) commitment complex    		 URS000012D749 RF00488 Saccharomyces
    cerevisiae
    S288C
    559292    		 31485080 Assembly1
    rna:r:-9~13 1,3~10,289,292~293
    6759 6n7p:r
    (3.6Å)
    		 22 N/A N/A N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 31485080 Assembly1
    rna:R:1~565 -2~-1,1~9,11~12
    6760 6n7r:R
    (3.2Å)
    		 558 GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0005685 (C) U1 snRNP    		 URS000012D749 RF00488 Saccharomyces
    cerevisiae
    4932    		 31485080 Assembly1
    rna:r:-2~156 1~10
    6761 6n7r:r
    (3.2Å)
    		 63 N/A N/A N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 31485080 Assembly1
    rna:R:1~565 -1,1~3,5~8
    6762 6n8f:A

    		 12 N/A URS0000E60B9E N/A unidentified
    32644    		 30702283 Assembly1
    rna:B:13~24 1~12
    6763 6n8f:B

    		 12 N/A URS0000E60B8E N/A unidentified
    32644    		 30702283 Assembly1
    rna:A:1~12 13~24
    6764 6n8h:A

    		 10 N/A URS0000E60BD1 N/A unidentified
    32644    		 30702283 Assembly1
    rna:B:11~20 1~10
    6765 6n8h:B

    		 10 N/A URS0000E60BD1 N/A unidentified
    32644    		 30702283 Assembly1
    rna:A:1~10 11~20
    6766 6n8i:A

    		 12 N/A URS0000E60B7F N/A unidentified
    32644    		 30702283 Assembly1
    rna:B:13~24 1~12
    6767 6n8i:B

    		 12 N/A URS0000E60B62 N/A unidentified
    32644    		 30702283 Assembly1
    rna:A:1~12 13~24
    6768 6n8j:1
    (3.5Å)
    		 3047 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 30814529 Assembly1
    rna:2:1~121 996~999,1052,1054~1055,1171,11
    97,1203
    rna:3:1~158 3~23,59,143,330~337,339~341,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1399,141
    9,1441,1530,1618,1620,1830~183
    1,2386,2585,2994~2995
    6769 6n8j:2
    (3.5Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 30814529 Assembly1
    rna:1:3~3396 79~81,86,90,100,102~104
    6770 6n8j:3
    (3.5Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 30814529 Assembly1
    rna:1:3~3396 1~22,24~37,40~41,53~54,104,114
    ~115,125,129,138,140~157
    6771 6n8k:1
    (3.6Å)
    		 3201 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 30814529 Assembly1
    rna:2:1~121 996~999,1052,1054~1055,1171,11
    97,1203
    rna:3:1~157 3~23,59,143,330~337,339~341,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1399,141
    9~1420,1441,1530,1583,1618,183
    0~1831,2386,2585,2994~2995
    6772 6n8k:2
    (3.6Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 30814529 Assembly1
    rna:1:3~3396 79~81,86,90,102~104
    6773 6n8k:3
    (3.6Å)
    		 157 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 30814529 Assembly1
    rna:1:3~3396 1~22,24~37,40~41,104,106,109,1
    12,114~115,137~152,154~157
    6774 6n8l:1
    (3.6Å)
    		 3201 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 30814529 Assembly1
    rna:2:1~121 996~999,1052,1054~1055,1156,11
    71,1197,1203
    rna:3:1~157 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1399,141
    9,1441,1530,1618,1830~1832,238
    6,2585,2994~2995
    6775 6n8l:2
    (3.6Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 30814529 Assembly1
    rna:1:3~3396 79~81,86,90,100,102~104
    6776 6n8l:3
    (3.6Å)
    		 157 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 30814529 Assembly1
    rna:1:3~3396 1,3~22,24~37,40~41,53~54,104,1
    09,112~115,126,136,138~152,154
    ~157
    6777 6n8m:A
    (3.5Å)
    		 3203 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 30814529 Assembly1
    rna:B:1~121 996~998,1052,1054~1055,1171,11
    97,1203
    rna:C:1~158 3~13,15~23,59,330~337,339~341,
    345~346,349,351,368~369,404~41
    9,656,691,1394~1395,1398~1399,
    1419,1530,1584,1618~1620,1830~
    1832,2386,2585,2994~2995
    6778 6n8m:B
    (3.5Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 30814529 Assembly1
    rna:A:3~3396 79~81,86,90,100,102~103
    6779 6n8m:C
    (3.5Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 30814529 Assembly1
    rna:A:3~3396 1~22,24~33,35~37,40,53~54,104,
    109,113~115,125~126,129,138~15
    7
    6780 6n8n:A
    (3.8Å)
    		 3203 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 30814529 Assembly1
    rna:B:1~121 996~998,1052,1054~1055,1171,11
    97,1203
    rna:C:1~158 3~23,59,330~337,339~342,345~34
    6,349,351,368~369,404~408,410~
    419,656,691,1394,1398~1399,141
    9~1420,1441,1530,1584,1618~161
    9,1830~1832,2386,2585,2994~299
    5
    6781 6n8n:B
    (3.8Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 30814529 Assembly1
    rna:A:3~3396 79~81,86,90,100,102~103
    6782 6n8n:C
    (3.8Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 30814529 Assembly1
    rna:A:3~3396 1,3~22,24~33,35~37,40~41,53~54
    ,104,106,109,113~115,126,138~1
    57
    6783 6n8o:A
    (3.5Å)
    		 3201 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 30814529 Assembly1
    rna:B:1~121 996~998,1052,1054~1055,1171,11
    97,1203
    rna:C:1~158 3~23,59,330~337,339~342,345~34
    6,349,351,368~369,404~419,656,
    691,1394~1395,1399,1419,1530,1
    584,1618~1619,1830~1831,2386,2
    585,2994~2995
    6784 6n8o:B
    (3.5Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 30814529 Assembly1
    rna:A:3~3396 79~81,86,90,100,102~103
    6785 6n8o:C
    (3.5Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 30814529 Assembly1
    rna:A:3~3396 1~22,24~33,35~37,40,53~54,104,
    109,114~115,126,129,139~157
    6786 6n9e:1A
    (3.7Å)
    		 2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    274    		 30520988 Assembly1
    rna:1B:1~120 908~911,961~965,1003
    rna:1a:4~1533 1736,1748,1750~1751,1863,1867~
    1868,1879,1934~1935,1937~1938,
    1941~1942,1969~1970,1981~1983,
    2873
    rna:1w:74~76 2463~2464,2518~2519,2565~2567,
    2585,2595~2597,2614
    rna:1x:2~76 1930~1931,1944~1946,2085~2086,
    2263~2265,2451,2462~2463,2613~
    2614
    6787 6n9e:1B
    (3.7Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    274    		 30520988 Assembly1
    rna:1A:6~2906 78~81,90,97~98,100~101
    6788 6n9e:1a
    (3.7Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177 Thermus
    thermophilus
    274    		 30520988 Assembly1
    rna:1A:6~2906 702,783~784,899,1407~1409,1418
    ,1429,1442A,1474~1475,1483~148
    4,1493~1496,1517
    rna:1v:14~19 926,1400~1403,1498,1506
    rna:1x:2~76 790,966,1229,1338~1341,1400
    6789 6n9e:1x
    (3.7Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 30520988 Assembly1
    rna:1A:6~2906 11~13,24~25,74~76
    rna:1a:4~1533 30~32,34,38~41
    rna:1v:14~19 34~37
    6790 6n9e:2A
    (3.7Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    274    		 30520988 Assembly2
    rna:2B:1~120 861~864,916~919,958
    rna:2a:4~1532 1689,1701,1703~1704,1836~1837,
    1848,1912~1916,1919~1920,1947~
    1948,1959~1961,2863~2864
    rna:2w:74~76 2451~2452,2504,2506~2507,2553,
    2555,2583~2585,2602
    rna:2x:2~76 1908,1923~1924,2251~2253,2450~
    2451,2601~2602
    6791 6n9e:2B
    (3.7Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    274    		 30520988 Assembly2
    rna:2A:6~2897 78~81,90,98,100~101
    6792 6n9e:2a
    (3.7Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177 Thermus
    thermophilus
    274    		 30520988 Assembly2
    rna:2A:6~2897 702,783~784,899,1407~1409,1418
    ,1429~1430,1442A,1474~1475,148
    3~1484,1493~1495,1517
    rna:2v:14~19 926,1400~1402,1498,1505
    rna:2x:2~76 790,966,1229~1230,1338~1340,14
    00
    6793 6n9e:2x
    (3.7Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 30520988 Assembly2
    rna:2A:6~2897 12~13,24,74~76
    rna:2a:4~1532 30~32,34,38~41
    rna:2v:14~19 34~37
    6794 6n9f:1A
    (3.7Å)
    		 2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    274    		 30520988 Assembly1
    rna:1B:1~120 908~911,961~965,1003
    rna:1a:4~1533 1736,1747~1751,1867~1868,1879,
    1934~1935,1937~1938,1941~1942,
    1969~1971,1981~1983,2873~2874
    rna:1w:73~76 2463~2464,2518~2519,2565,2567,
    2585,2595~2597,2614
    rna:1x:2~76 1930~1931,1944~1946,2085,2263~
    2265,2267,2451,2462~2463,2613~
    2614
    6795 6n9f:1B
    (3.7Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    274    		 30520988 Assembly1
    rna:1A:6~2906 78~81,90,97~98,100~101
    6796 6n9f:1a
    (3.7Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177 Thermus
    thermophilus
    274    		 30520988 Assembly1
    rna:1A:6~2906 702,784,899,1407~1409,1418,142
    9,1442A,1473~1475,1483~1484,14
    93~1496,1517
    rna:1v:12~18 926,1400~1403,1498,1503,1505~1
    507
    rna:1x:2~76 790,966,1229~1230,1338~1340,14
    00
    6797 6n9f:1x
    (3.7Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 30520988 Assembly1
    rna:1A:6~2906 3,11~12,24~25,74~76
    rna:1a:4~1533 30~31,34,38,40~41
    rna:1v:12~18 34~37
    6798 6n9f:2A
    (3.7Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    274    		 30520988 Assembly2
    rna:2B:1~120 861~864,916~919,958
    rna:2a:4~1532 1689,1701~1704,1836~1837,1848,
    1912~1916,1919~1920,1947~1948,
    1959~1961,2863~2864
    rna:2w:73~76 2451~2452,2506~2507,2553~2555,
    2573,2583~2585,2602
    rna:2x:2~76 1908,1923~1924,2064,2251~2253,
    2439,2450~2451,2601~2602
    6799 6n9f:2B
    (3.7Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    274    		 30520988 Assembly2
    rna:2A:6~2897 78~81,90,97~98,100~102
    6800 6n9f:2a
    (3.7Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177 Thermus
    thermophilus
    274    		 30520988 Assembly2
    rna:2A:6~2897 702,783~784,899,1407~1409,1418
    ,1429~1430,1442A,1473~1475,148
    3~1485,1493~1496,1517
    rna:2v:14~19 926,1400~1401,1498,1505
    rna:2x:2~76 790,966,1229~1230,1338~1340,14
    00
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.