SEQ2FUN

FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    6901 6o8w:u
    (3.53Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Enterococcus
    faecalis
    1351    		 33004869 Assembly1
    rna:a:3~1550 31~32,34,40~41
    rna:v:15~19 34~37
    rna:A:4~2911 3,18~19,56~57,70~71,76
    6902 6o8x:A
    (3.68Å)
    		 2898 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED8EF RF02540
    RF02541
    RF00002    		 Enterococcus
    faecalis
    1351    		 33004869 Assembly1
    rna:a:3~1550 1744,1961~1962,1973~1974
    rna:B:1~116 902~904,958~959,2354
    6903 6o8x:B
    (3.68Å)
    		 116 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000240630 RF00001 Enterococcus
    faecalis
    1351    		 33004869 Assembly1
    rna:A:4~2911 39,76~78,95,98
    6904 6o8x:a
    (3.68Å)
    		 1528 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED954 RF00177
    RF01959
    RF01960    		 Enterococcus
    faecalis
    1351    		 33004869 Assembly1
    rna:A:4~2911 1433,1490,1499~1500
    6905 6o8y:A
    (4.14Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED8EF RF02540
    RF02541
    RF00002    		 Enterococcus
    faecalis
    1351    		 33004869 Assembly1
    rna:a:3~1550 1862,1961~1962
    rna:B:1~116 902~904,958~959
    6906 6o8y:B
    (4.14Å)
    		 116 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000240630 RF00001 Enterococcus
    faecalis
    1351    		 33004869 Assembly1
    rna:A:4~2911 76~78,94,97~98
    6907 6o8y:a
    (4.14Å)
    		 1528 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED954 RF00177
    RF01959
    RF01960    		 Enterococcus
    faecalis
    1351    		 33004869 Assembly1
    rna:A:4~2911 717,1433,1499
    6908 6o8z:A
    (3.49Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED959 RF02540
    RF02541
    RF00002    		 Enterococcus
    faecalis
    1351    		 33004869 Assembly1
    rna:a:3~1550 1846,1862,1926~1927,1933~1934,
    1961~1962,1973~1974
    rna:B:1~116 903~905,959,2353
    6909 6o8z:B
    (3.49Å)
    		 116 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000240630 RF00001 Enterococcus
    faecalis
    1351    		 33004869 Assembly1
    rna:A:4~2911 39,76~78,95,97~98
    6910 6o8z:a
    (3.49Å)
    		 1523 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED954 RF00177
    RF01959
    RF01960    		 Enterococcus
    faecalis
    1351    		 33004869 Assembly1
    rna:A:4~2911 717,915,1422~1424,1433,1499~15
    00,1509~1511,1533
    6911 6o90:A
    (3.49Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED8EF RF02540
    RF02541
    RF00002    		 Enterococcus
    faecalis
    1351    		 33004869 Assembly1
    rna:a:3~1550 1746,1926~1928,1933~1934,1961~
    1962,1964,1973~1974
    rna:B:1~116 902~904,958~959,2354
    6912 6o90:B
    (3.49Å)
    		 116 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000240630 RF00001 Enterococcus
    faecalis
    1351    		 33004869 Assembly1
    rna:A:4~2911 39,76~78,98
    6913 6o90:a
    (3.49Å)
    		 1528 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED954 RF00177
    RF01959
    RF01960    		 Enterococcus
    faecalis
    1351    		 33004869 Assembly1
    rna:A:4~2911 1422~1424,1433,1435,1444,1499~
    1500,1509~1511,1533
    6914 6o97:1A
    (2.75Å)
    		 2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 30793894 Assembly1
    rna:1B:1~120 861~864,915,917~919,958
    rna:1a:4~1533 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1915~1916,
    1919~1920,1947~1949,1959~1961,
    2863~2864
    rna:1w:1~76 882~883,897,1913,1916,1942,247
    0,2482~2483,2506~2507,2553,255
    5,2583~2585,2602
    rna:1x:2~76 1907~1909,1922~1924,2251~2253,
    2450~2451,2601~2602
    rna:1y:1~76 1851,2112,2169,2394~2395,2421~
    2422
    6915 6o97:1B
    (2.75Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 30793894 Assembly1
    rna:1A:6~2897 78~81,90,97~98,100~102
    6916 6o97:1a
    (2.75Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 30793894 Assembly1
    rna:1A:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1473~1475,1483
    ~1484,1494~1496,1517
    rna:1v:12~24 530,926,1196,1397,1400~1401,14
    92~1493,1498,1503,1505,1507
    rna:1w:1~76 530~531,1054,1493
    rna:1x:2~76 790,966,1229~1230,1338~1340,14
    00
    6917 6o97:1v
    (2.75Å)
    		 13 N/A N/A N/A Tequatrovirus
    T4
    10665    		 30793894 Assembly1
    rna:1a:4~1533 12~13,15~24
    rna:1w:1~76 19~21
    rna:1x:2~76 16~18
    6918 6o97:1w
    (2.75Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00003179F7 RF00005 Escherichia
    coli
    562    		 30793894 Assembly1
    rna:1A:6~2897 12,19,37~38,55~56,64,71,74~76
    rna:1a:4~1533 34~37
    rna:1v:12~24 34~37
    6919 6o97:1x
    (2.75Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 30793894 Assembly1
    rna:1A:6~2897 11~13,24~25,74~76
    rna:1a:4~1533 29~32,34,38~41
    rna:1v:12~24 34~37
    6920 6o97:1y
    (2.75Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00003179F7 RF00005 Escherichia
    coli
    562    		 30793894 Assembly1
    rna:1A:6~2897 19,56,72,76
    6921 6o97:2A
    (2.75Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 30793894 Assembly2
    rna:2B:1~120 861~864,915,917~918,958
    rna:2a:4~1532 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1916,1919~1920,
    1947~1948,1959~1961
    rna:2w:1~76 882,896~897,1913,1916,2470,248
    2~2483,2506~2508,2553,2555,257
    3,2583~2585,2602
    rna:2x:2~76 1907~1909,1922~1924,2251~2253,
    2451,2585,2601~2602
    rna:2y:1~76 1851,2112,2169,2394~2395,2421~
    2422,2432
    6922 6o97:2B
    (2.75Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 30793894 Assembly2
    rna:2A:6~2897 78~80,90,97~98,100~101
    6923 6o97:2a
    (2.75Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 30793894 Assembly2
    rna:2A:6~2897 702,783~784,899,1407~1409,1418
    ,1429~1430,1473~1475,1483~1484
    ,1494~1496,1517
    rna:2v:12~24 530,926,1196,1397,1400~1402,14
    92~1493,1498,1503,1505~1507
    rna:2w:1~76 530,1054,1493
    rna:2x:2~76 790,966,1229,1338~1340,1400
    6924 6o97:2v
    (2.75Å)
    		 13 N/A N/A N/A Tequatrovirus
    T4
    10665    		 30793894 Assembly2
    rna:2a:4~1532 12~13,15~21,23~24
    rna:2w:1~76 19~22
    rna:2x:2~76 16~18
    6925 6o97:2w
    (2.75Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00003179F7 RF00005 Escherichia
    coli
    562    		 30793894 Assembly2
    rna:2A:6~2897 12,19,37~38,52,56,64,74~76
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    6926 6o97:2x
    (2.75Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 30793894 Assembly2
    rna:2A:6~2897 11~13,24~25,74~76
    rna:2a:4~1532 30~32,34,38,40~41
    rna:2v:12~24 34~37
    6927 6o97:2y
    (2.75Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00003179F7 RF00005 Escherichia
    coli
    562    		 30793894 Assembly2
    rna:2A:6~2897 19,56,71~72,76
    6928 6o9j:A
    (3.9Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DF7E RF00001 Escherichia
    coli
    562    		 31108498 Assembly1
    rna:B:1~2903 78~81,89~90,96~97,99~100
    6929 6o9j:B
    (3.9Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000EEAD0C RF02540
    RF02541    		 Escherichia
    coli
    562    		 31108498 Assembly1
    rna:A:2~118 861~864,915,917~919,958
    rna:a:5~1534 1689,1702~1704,1832,1837,1846,
    1848,1912~1913,1916,1919~1920,
    1947~1948,1959~1961
    rna:v:1~76 1908~1909,1922~1924,2251,2450~
    2451,2602
    6930 6o9j:a
    (3.9Å)
    		 1530 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E24C RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 31108498 Assembly1
    rna:B:1~2903 702,784,899~900,1407~1409,1418
    ,1429~1430,1475,1483~1484,1491
    ~1492,1494~1495,1517
    rna:v:1~76 790,966,1229~1230,1338,1400
    6931 6o9j:v
    (3.9Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 31108498 Assembly1
    rna:B:1~2903 11~13,24,74~76
    rna:a:5~1534 29~31,34,38~39,41
    6932 6o9k:A
    (4.0Å)
    		 2854 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DD2C RF02540
    RF02541    		 Escherichia
    coli
    562    		 31108498 Assembly1
    rna:a:2~1540 1689,1703,1848,1912~1914,1916,
    1919~1920,1948,1959~1960
    rna:X:2~119 861~863,917~918,958
    6933 6o9k:X
    (4.0Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000366A67 RF00001 Escherichia
    coli
    562    		 31108498 Assembly1
    rna:A:1~2903 79~80,89,99~100
    6934 6o9k:a
    (4.0Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 31108498 Assembly1
    rna:x:13~18 693,926,1400~1401,1498
    rna:y:1~77 790,1229~1230,1338~1340,1400
    rna:A:1~2903 702,1407~1410,1418,1429,1475,1
    483~1484,1492~1496,1517
    6935 6o9k:y
    (4.0Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 31108498 Assembly1
    rna:a:2~1540 31~33,35,39~40,42
    rna:x:13~18 35~38
    6936 6of1:1A
    (2.8Å)
    		 2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 30936109 Assembly1
    rna:1B:1~120 861~864,915,917~919,958
    rna:1a:4~1533 1689,1701~1704,1832,1836~1837,
    1846,1848,1912~1916,1919~1920,
    1947~1949,1959~1961,2863~2864
    rna:1w:1~76 882~883,897,1913,1942,2470,248
    2~2483,2506~2507,2553~2555,257
    3,2583~2585,2602
    rna:1x:2~76 1907~1909,1922~1924,2251~2253,
    2439,2450~2451,2601~2602
    rna:1y:1~76 1851,2112,2169,2394~2395,2421~
    2422
    6937 6of1:1B
    (2.8Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 30936109 Assembly1
    rna:1A:6~2897 78~81,90,97~98,100~102
    6938 6of1:1a
    (2.8Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 30936109 Assembly1
    rna:1A:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1473~1475,1483
    ~1484,1494~1496,1517
    rna:1v:12~24 530,926,1196,1397,1400~1402,14
    92~1493,1498,1503,1505,1507
    rna:1w:1~76 530~531,1054,1493
    rna:1x:2~76 790,966,1229~1230,1338~1340,14
    00
    6939 6of1:1v
    (2.8Å)
    		 13 N/A N/A N/A Tequatrovirus
    T4
    10665    		 30936109 Assembly1
    rna:1a:4~1533 13,15~24
    rna:1w:1~76 19~22
    rna:1x:2~76 16~18
    6940 6of1:1w
    (2.8Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00003179F7 RF00005 Escherichia
    coli
    562    		 30936109 Assembly1
    rna:1A:6~2897 19,37~38,56,64,71,74~76
    rna:1a:4~1533 34~37
    rna:1v:12~24 34~37
    6941 6of1:1x
    (2.8Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 30936109 Assembly1
    rna:1A:6~2897 11~13,24~25,74~76
    rna:1a:4~1533 29~32,34,38~41
    rna:1v:12~24 34~37
    6942 6of1:1y
    (2.8Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00003179F7 RF00005 Escherichia
    coli
    562    		 30936109 Assembly1
    rna:1A:6~2897 19,56,72,76
    6943 6of1:2A
    (2.8Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 30936109 Assembly2
    rna:2B:1~120 861~864,915~919,958
    rna:2a:4~1532 1700~1704,1832,1836~1837,1846,
    1848,1912~1916,1919~1920,1947~
    1949,1959~1961,2863~2864
    rna:2w:1~76 881~882,896~897,1913,1942,2482
    ~2483,2506~2507,2553~2555,2573
    ,2583~2585,2602
    rna:2x:2~76 1907~1909,1922~1924,2251~2253,
    2439,2450~2451,2601~2602
    rna:2y:1~76 1851,2112,2169,2394~2395,2421~
    2422,2432
    6944 6of1:2B
    (2.8Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 30936109 Assembly2
    rna:2A:6~2897 78~81,90,97~98,100~102
    6945 6of1:2a
    (2.8Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 30936109 Assembly2
    rna:2A:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1473~1475,1483
    ~1484,1493~1496,1517
    rna:2v:12~24 926,1196,1397,1400~1402,1492~1
    493,1498,1503,1505,1507
    rna:2w:1~76 530,1054,1493
    rna:2x:2~76 790,966,1229~1230,1338~1340,14
    00
    rna:2y:1~76 693~694
    6946 6of1:2v
    (2.8Å)
    		 13 N/A N/A N/A Tequatrovirus
    T4
    10665    		 30936109 Assembly2
    rna:2a:4~1532 12~13,15~20,22~24
    rna:2w:1~76 19~22
    rna:2x:2~76 16~18
    rna:2y:1~76 14~15
    6947 6of1:2w
    (2.8Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00003179F7 RF00005 Escherichia
    coli
    562    		 30936109 Assembly2
    rna:2A:6~2897 19,37~38,56,64,71,74~76
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    6948 6of1:2x
    (2.8Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 30936109 Assembly2
    rna:2A:6~2897 11~13,24~25,74~76
    rna:2a:4~1532 30~32,34,38~41
    rna:2v:12~24 34~37
    6949 6of1:2y
    (2.8Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00003179F7 RF00005 Escherichia
    coli
    562    		 30936109 Assembly2
    rna:2A:6~2897 19,56,71~72,76
    rna:2a:4~1532 37~38
    6950 6of6:QA
    (3.2Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 32601241 Assembly1
    rna:QV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:QX:6~24 530,926,1397,1400~1401,1492~14
    93,1498,1503,1505,1507
    rna:QY:1~75 530~531,1054,1493
    rna:RA:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1443,1473~1474,1483~
    1485,1494~1496,1517
    6951 6of6:QV
    (3.2Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 32601241 Assembly1
    rna:QA:5~1531 29~32,34,38~41
    rna:QX:6~24 34~37
    rna:RA:6~2897 11~13,24~25,74~76
    6952 6of6:QW
    (3.2Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0001A24B5E RF00005 Escherichia
    coli
    562    		 32601241 Assembly1
    rna:RA:6~2897 17,19,56,71,76
    6953 6of6:QX
    (3.2Å)
    		 19 N/A N/A N/A Escherichia
    coli
    562    		 32601241 Assembly1
    rna:QA:5~1531 11~12,15~22
    rna:QV:1~76 16~18
    rna:QY:1~75 19~21
    6954 6of6:QY
    (3.2Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001C39A4 RF00005 Escherichia
    coli
    #1/H766
    1354003    		 32601241 Assembly1
    rna:QA:5~1531 34~37
    rna:QX:6~24 34~37
    rna:RA:6~2897 18~19,37~38,55~56,74~75
    6955 6of6:RA
    (3.2Å)
    		 2882 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 32601241 Assembly1
    rna:QA:5~1531 1701~1704,1832,1836~1837,1846,
    1848,1895,1912~1913,1915~1916,
    1919~1920,1947~1949,1959~1961,
    2863~2864
    rna:QV:1~76 1907~1909,1922~1924,2251~2253,
    2255,2450~2451,2585,2602
    rna:QW:1~76 1851,2112,2169,2180,2394~2395,
    2421~2422
    rna:QY:1~75 881~882,896~898,1913,2507,2553
    ~2555
    rna:RB:1~119 861~864,915,917~919,958
    6956 6of6:RB
    (3.2Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 32601241 Assembly1
    rna:RA:6~2897 78~81,89A,96~97,99~100
    6957 6of6:XA
    (3.2Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 32601241 Assembly2
    rna:XV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:XW:1~76 694~695,788,1340
    rna:XX:6~23 530,693,788~789,926,1397,1400~
    1401,1492~1493,1498,1503,1507
    rna:XY:1~75 530~531,1054,1493
    rna:YA:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1443,1473~1474,1483~
    1484,1494~1496,1517
    6958 6of6:XV
    (3.2Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 32601241 Assembly2
    rna:XA:5~1531 30~32,34,38~41
    rna:XX:6~23 34~37
    rna:YA:6~2897 11~13,24~25,74~76
    6959 6of6:XW
    (3.2Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0001A24B5E RF00005 Escherichia
    coli
    562    		 32601241 Assembly2
    rna:XA:5~1531 33~35,37~39
    rna:YA:6~2897 17,19,71,76
    6960 6of6:XX
    (3.2Å)
    		 18 N/A N/A N/A Escherichia
    coli
    562    		 32601241 Assembly2
    rna:XA:5~1531 11~22
    rna:XV:1~76 16~18
    rna:XY:1~75 19~22
    6961 6of6:XY
    (3.2Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001C39A4 RF00005 Escherichia
    coli
    #1/H766
    1354003    		 32601241 Assembly2
    rna:XA:5~1531 34~37
    rna:XX:6~23 34~37
    rna:YA:6~2897 19,37~38,55~56,64,71~72,74~75
    6962 6of6:YA
    (3.2Å)
    		 2883 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 32601241 Assembly2
    rna:XA:5~1531 1701~1704,1832,1836~1837,1846,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1949,1959~1961,2863~
    2864
    rna:XV:1~76 1907~1909,1922~1924,2064,2251~
    2253,2450~2451,2602
    rna:XW:1~76 1851,2112,2180,2394~2395,2421~
    2422
    rna:XY:1~75 881~882,896~897,1913,1942,2482
    ~2483,2507,2553~2555,2573
    rna:YB:1~119 861~864,915,917~919,958
    6963 6of6:YB
    (3.2Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 32601241 Assembly2
    rna:YA:6~2897 78~81,89A,96~97,99~100
    6964 6ofx:1
    (3.3Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000BC4674 RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 31513010 Assembly1
    rna:3:2~1540 1703~1704,1837,1846,1848,1912~
    1914,1916,1919~1920,1947~1949,
    1959~1961
    rna:2:1~120 861~863,915,917~918,958
    rna:5:1~76 2251~2253,2450~2451
    6965 6ofx:2
    (3.3Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00008116C5 RF00001 Escherichia
    coli
    K-12
    83333    		 31513010 Assembly1
    rna:1:1~2903 78~80,89,97,99~100
    6966 6ofx:3
    (3.3Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 31513010 Assembly1
    rna:1:1~2903 702,784,1407~1409,1418~1420,14
    29,1483~1485,1491,1493~1495,15
    17
    rna:5:1~76 790,966,1229~1230,1338~1341,14
    00
    rna:4:5~24 530,693,926,1196,1397,1400~140
    3,1492,1494,1498,1503,1534~153
    9
    6967 6ofx:4
    (3.3Å)
    		 20 N/A N/A N/A synthetic
    construct
    32630    		 31513010 Assembly1
    rna:3:2~1540 6~23
    rna:5:1~76 16~18
    6968 6ofx:5
    (3.3Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 31513010 Assembly1
    rna:3:2~1540 29~32,34,38~39,41~42
    rna:1:1~2903 74~76
    rna:4:5~24 34~37
    6969 6og7:1
    (3.3Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000BC4674 RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 31513010 Assembly1
    rna:3:2~1540 1689,1701,1703~1704,1832,1837,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1949,1959~1961
    rna:2:1~120 861~864,917~918,958
    rna:5:1~74 1923~1924,2252~2253
    6970 6og7:2
    (3.3Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00008116C5 RF00001 Escherichia
    coli
    K-12
    83333    		 31513010 Assembly1
    rna:1:1~2903 78~80,89~90,96~97,99~101
    6971 6og7:3
    (3.3Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 31513010 Assembly1
    rna:1:1~2903 702,784,899~900,1407~1409,1418
    ,1429,1474~1476,1483~1485,1493
    ~1496,1517
    rna:5:1~74 790,966,1229~1230,1338~1341,14
    00
    rna:4:5~24 530,926,1196,1397,1400~1401,14
    92~1494,1498,1534~1540
    6972 6og7:4
    (3.3Å)
    		 20 N/A N/A N/A synthetic
    construct
    32630    		 31513010 Assembly1
    rna:3:2~1540 5~11,15~22
    rna:5:1~74 16~18
    6973 6og7:5
    (3.3Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 31513010 Assembly1
    rna:3:2~1540 30~32,34,38~40,42
    rna:1:1~2903 13,24,74
    rna:4:5~24 34~37
    6974 6ogf:1
    (3.9Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000BC4674 RF02540
    RF02541    		 Escherichia
    coli
    562    		 31513010 Assembly1
    rna:3:2~1540 1701,1703~1704,1846,1848,1912~
    1913,1915~1916,1919~1920,1947~
    1949,1959~1961
    rna:2:1~120 861~863,915,917~918,958
    6975 6ogf:2
    (3.9Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00008116C5 RF00001 Escherichia
    coli
    562    		 31513010 Assembly1
    rna:1:1~2903 78~80,89,96~97,99~100
    6976 6ogf:3
    (3.9Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 31513010 Assembly1
    rna:1:1~2903 702,1407~1409,1418~1420,1429,1
    474~1475,1483~1485,1493~1495,1
    517
    rna:5:1~72 790,966,1230,1338~1341,1400
    rna:4:5~24 530,693,926,1196,1397,1400~140
    1,1492~1494,1498,1505,1534~154
    0
    6977 6ogf:4
    (3.9Å)
    		 20 N/A N/A N/A synthetic
    construct
    32630    		 31513010 Assembly1
    rna:3:2~1540 5~13,15~22
    rna:5:1~72 16~18
    6978 6ogf:5
    (3.9Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 31513010 Assembly1
    rna:3:2~1540 29~31,34,38~42
    rna:4:5~24 34~37
    6979 6ogg:1
    (4.2Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000BC4674 RF02540
    RF02541    		 Escherichia
    coli
    562    		 31513010 Assembly1
    rna:3:2~1540 1689,1701,1912~1914,1919,1959~
    1960
    rna:2:1~120 861~863,917~918,958~959
    6980 6ogg:2
    (4.2Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00008116C5 RF00001 Escherichia
    coli
    562    		 31513010 Assembly1
    rna:1:1~2903 78~80,89~90,99~100
    6981 6ogg:3
    (4.2Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 31513010 Assembly1
    rna:1:1~2903 1407~1409,1418,1473~1475,1483~
    1484,1494
    rna:5:1~72 790,966,1338,1340~1341,1384
    rna:4:5~24 530,693,926,928,1397,1400~1403
    ,1492~1494,1498,1503,1505,1534
    ~1540
    6982 6ogg:4
    (4.2Å)
    		 20 N/A N/A N/A synthetic
    construct
    32630    		 31513010 Assembly1
    rna:3:2~1540 5~14,16~23
    rna:5:1~72 16~18
    6983 6ogg:5
    (4.2Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 31513010 Assembly1
    rna:3:2~1540 30,32,34~35,39,43
    rna:1:1~2903 19,56
    rna:4:5~24 34~37
    6984 6ogi:1
    (3.4Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000BC4674 RF02540
    RF02541    		 Escherichia
    coli
    562    		 31513010 Assembly1
    rna:3:2~1540 1700~1701,1703,1847,1947~1950,
    1959~1961
    rna:2:1~120 861~863,915,917~919,958~959
    rna:5:1~73 1851,2112
    6985 6ogi:2
    (3.4Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00008116C5 RF00001 Escherichia
    coli
    562    		 31513010 Assembly1
    rna:1:1~2903 78~81,89~90,96,99~100
    6986 6ogi:3
    (3.4Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    562    		 31513010 Assembly1
    rna:1:1~2903 702,1420,1429,1474,1483~1485
    rna:5:1~73 790,966,1229~1230,1338~1339
    rna:4:5~24 15,530,693,1196,1397,1400~1401
    ,1493,1498,1505,1534~1540
    6987 6ogi:4
    (3.4Å)
    		 20 N/A N/A N/A synthetic
    construct
    32630    		 31513010 Assembly1
    rna:3:2~1540 5,7~11,13,16~19,22~23
    rna:5:1~73 16~18
    6988 6ogi:5
    (3.4Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 31513010 Assembly1
    rna:3:2~1540 30~31,34,38,40
    rna:1:1~2903 19,56
    rna:4:5~24 34~37
    6989 6ogz:B
    (3.6Å)
    		 18 N/A URS0000E60BC2 N/A Rotavirus
    A
    28875    		 31101900 Assembly1
    rna:C:589~605 591~599
    6990 6ogz:C
    (3.6Å)
    		 17 N/A URS0000E60B87 N/A Rotavirus
    A
    28875    		 31101900 Assembly1
    rna:B:582~599 594~601,603
    6991 6oig:5
    (3.8Å)
    		 3243 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632E RF02540
    RF02543    		 Saccharomyces
    cerevisiae
    4932    		 33219089
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:8:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656,691,1395~1396,1399,1419,14
    41~1442,1530,1558,1584~1585,16
    18~1619,1830~1831,2386,2585,29
    94~2995
    rna:7:1~121 996~999,1052~1056,1156,1170~11
    71,1197
    6992 6oig:7
    (3.8Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    4932    		 33219089 Assembly1
    rna:5:3~3396 79~82,86,99~104
    6993 6oig:8
    (3.8Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 33219089
    441    		 Assembly1
    rna:5:3~3396 1,3~33,35~37,40~41,52~54,104,1
    09~110,112~114,125~126,129,136
    ~158
    6994 6oj2:QA
    (3.2Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 32601241 Assembly1
    rna:QV:1~76 790,966,1229~1230,1338~1340,14
    00
    rna:QW:1~76 694,1340
    rna:QX:6~24 693,926,1397,1400~1402,1492~14
    93,1498,1503,1505,1507
    rna:QY:1~75 530,1054,1493
    rna:RA:6~2897 702,784,899,1407~1409,1418,142
    9,1443,1474~1475,1483~1484,149
    3~1495,1517
    6995 6oj2:QV
    (3.2Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 32601241 Assembly1
    rna:QA:5~1531 30~32,34,38,40~41
    rna:QX:6~24 34~37
    rna:RA:6~2897 11~13,24,74~76
    6996 6oj2:QW
    (3.2Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0001A24B6F RF00005 Escherichia
    coli
    562    		 32601241 Assembly1
    rna:QA:5~1531 35,37
    rna:QX:6~24 34~35
    rna:RA:6~2897 17,19,56,71,76
    6997 6oj2:QX
    (3.2Å)
    		 19 N/A N/A N/A Escherichia
    coli
    562    		 32601241 Assembly1
    rna:QA:5~1531 11~13,15~20,22
    rna:QV:1~76 16~18
    rna:QW:1~76 13~14
    rna:QY:1~75 19,21~22
    6998 6oj2:QY
    (3.2Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001C39A4 RF00005 Escherichia
    coli
    562    		 32601241 Assembly1
    rna:QA:5~1531 34~37
    rna:QX:6~24 34~37
    rna:RA:6~2897 19,37,55~56,64,71,74~75
    6999 6oj2:RA
    (3.2Å)
    		 2882 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 32601241 Assembly1
    rna:QA:5~1531 1689,1701,1703~1704,1836~1837,
    1846,1848,1895,1912~1913,1915~
    1916,1919~1920,1947~1949,1959~
    1961,2863~2864
    rna:QV:1~76 1907~1909,1923~1924,2064,2251~
    2253,2255,2450~2451,2585,2601~
    2602
    rna:QW:1~76 1851,2112,2169,2180~2181,2394~
    2395,2421~2422
    rna:QY:1~75 881~882,896~898,1913,1942,2482
    ,2507,2553~2555
    rna:RB:1~119 861~863,917~919,958
    7000 6oj2:RB
    (3.2Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2F4B RF00001 Thermus
    thermophilus
    HB8
    300852    		 32601241 Assembly1
    rna:RA:6~2897 78~81,89A,97,99~100
    << < 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.