SEQ2FUN

FURNA
Download all results in tab-seperated text for 16611 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    8101 6xhy:1a
    (2.6Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177 Thermus
    thermophilus
    HB8
    300852    		 33462493 Assembly1
    rna:1A:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1473~1475,1483
    ~1484,1494~1496,1517
    rna:1v:12~24 926,1196,1397,1400~1402,1492~1
    493,1498,1503,1505,1507
    rna:1w:1~76 530~531,1054,1493
    rna:1x:2~76 790,966,1229~1230,1338~1341,14
    00
    8102 6xhy:1v
    (2.6Å)
    		 13 N/A N/A N/A Tequatrovirus
    T4
    10665    		 33462493 Assembly1
    rna:1a:4~1533 12~13,15~20,22~24
    rna:1w:1~76 19~21
    rna:1x:2~76 16~18
    8103 6xhy:1w
    (2.6Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 33462493 Assembly1
    rna:1A:6~2897 19,37~38,56,64,74~76
    rna:1a:4~1533 34~37
    rna:1v:12~24 34~37
    8104 6xhy:1x
    (2.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 33462493 Assembly1
    rna:1A:6~2897 11~13,24~25,74~76
    rna:1a:4~1533 29~32,34,38,40~41
    rna:1v:12~24 34~37
    8105 6xhy:1y
    (2.6Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 33462493 Assembly1
    rna:1A:6~2897 19,56,71,76
    8106 6xhy:2A
    (2.6Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 33462493 Assembly2
    rna:2B:1~120 861~864,916~919,958
    rna:2a:4~1532 1700~1704,1832,1836~1837,1846,
    1848,1912~1916,1919~1920,1947~
    1948,1959~1960,2863~2864
    rna:2w:2~76 881,897,1913,2451~2452,2482,25
    06~2507,2553~2555,2583~2585,26
    02
    rna:2x:2~76 1907~1909,1922~1924,2062~2063,
    2251~2253,2439,2450~2451,2601~
    2602
    rna:2y:1~76 1851~1852,1885,2112,2169,2394~
    2395,2421~2422
    8107 6xhy:2B
    (2.6Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 33462493 Assembly2
    rna:2A:6~2897 78~81,90,97~98,100~102
    8108 6xhy:2a
    (2.6Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177 Thermus
    thermophilus
    HB8
    300852    		 33462493 Assembly2
    rna:2A:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1473~1475,1483
    ~1484,1494~1496,1517
    rna:2v:12~24 530,926,1196,1397,1400~1402,14
    92~1493,1498,1503,1505,1507
    rna:2w:2~76 530,1054,1493
    rna:2x:2~76 790,966,1229~1230,1338~1340,14
    00
    8109 6xhy:2v
    (2.6Å)
    		 13 N/A N/A N/A Tequatrovirus
    T4
    10665    		 33462493 Assembly2
    rna:2a:4~1532 12~13,15~24
    rna:2w:2~76 19~22
    rna:2x:2~76 16~18
    8110 6xhy:2w
    (2.6Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 33462493 Assembly2
    rna:2A:6~2897 37~38,56,64,74~76
    rna:2a:4~1532 34~37
    rna:2v:12~24 34~37
    8111 6xhy:2x
    (2.6Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 33462493 Assembly2
    rna:2A:6~2897 11~13,24~25,74~76
    rna:2a:4~1532 30~32,34,38~41
    rna:2v:12~24 34~37
    rna:2y:1~76 39~40
    8112 6xhy:2y
    (2.6Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 33462493 Assembly2
    rna:2A:6~2897 3,19,56,71~72,76
    rna:2x:2~76 35~36
    8113 6xii:7
    (7.0Å)
    		 31 N/A N/A N/A synthetic
    construct
    32630    		 32820061 Assembly1
    rna:B:1~76 -20~-18
    rna:D:1~1534 -20~-17,-15,-13~-12
    8114 6xii:A
    (7.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DFF5 RF00005 Escherichia
    coli
    562    		 32820061 Assembly1
    rna:a:1~2903 16~17,19,56,71~72,76
    8115 6xii:B
    (7.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DFF5 RF00005 Escherichia
    coli
    562    		 32820061 Assembly1
    rna:7:-20~20 35~36
    rna:D:1~1534 30~31,34,37
    rna:a:1~2903 2,13,24,75~76
    8116 6xii:D
    (7.0Å)
    		 1524 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177 Escherichia
    coli
    562    		 32820061 Assembly1
    rna:7:-20~20 926,1196,1395,1397,1401,1403,1
    493,1499~1501,1505
    rna:B:1~76 1339~1340,1400,1497
    rna:a:1~2903 1408~1409,1475,1492,1494,1517
    8117 6xii:a
    (7.0Å)
    		 2880 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000B21DEA RF02541 Escherichia
    coli
    562    		 32820061 Assembly1
    rna:A:1~76 1851~1852,2111~2112,2168,2180~
    2181,2394~2395,2421~2422
    rna:B:1~76 1907,1922~1923,2255,2493~2494,
    2602
    rna:D:1~1534 1689,1912~1913,1916,1919~1920
    rna:d:1~120 861~864,915,917~919,958,2340
    8118 6xii:d
    (7.0Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 32820061 Assembly1
    rna:a:1~2903 41,78~81,89,96~97,99~100
    8119 6xij:7
    (8.0Å)
    		 22 N/A N/A N/A synthetic
    construct
    32630    		 32820061 Assembly1
    rna:B:1~76 -20~-18
    rna:D:1~1534 -20~-17,-15,-13~-12
    8120 6xij:A
    (8.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DFF5 RF00005 Escherichia
    coli
    562    		 32820061 Assembly1
    rna:a:1~2903 16~17,19,56,71~72,76
    8121 6xij:B
    (8.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DFF5 RF00005 Escherichia
    coli
    562    		 32820061 Assembly1
    rna:7:-20~20 35~36
    rna:D:1~1534 30~31,34,37
    rna:a:1~2903 2,13,24,75~76
    8122 6xij:D
    (8.0Å)
    		 1524 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00000ABFE9 RF00177 Escherichia
    coli
    562    		 32820061 Assembly1
    rna:7:-20~20 926,1196,1395,1397,1401,1403,1
    493,1499~1501,1505
    rna:B:1~76 1339~1340,1400,1497
    rna:a:1~2903 1408~1409,1475,1492,1494,1517
    8123 6xij:a
    (8.0Å)
    		 2880 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000B21DEA RF02541 Escherichia
    coli
    562    		 32820061 Assembly1
    rna:A:1~76 1851~1852,2111~2112,2168,2180~
    2181,2394~2395,2421~2422
    rna:B:1~76 1907,1922~1923,2255,2493~2494,
    2602
    rna:D:1~1534 1689,1912~1913,1916,1919~1920
    rna:d:1~120 861~864,915,917~919,958,2340
    8124 6xij:d
    (8.0Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 32820061 Assembly1
    rna:a:1~2903 41,78~81,89,96~97,99~100
    8125 6xiq:1
    (4.2Å)
    		 3223 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E1A1 RF02543 Saccharomyces
    cerevisiae
    4932    		 32855298
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:3:1~121 996~999,1051,1055~1057,1170,11
    97,1202~1203
    rna:4:1~158 3~25,59,142~143,331~337,339~34
    3,345,349,351,367~369,404,406~
    408,410~419,691,1393,1398~1399
    ,1440,1529,1583~1585,1588,1617
    ~1619,2994~2995
    rna:2:1~1798 846~848,2124,2205,2255~2256,22
    58~2259,2262~2263,2275,2290~22
    93,2300~2303
    rna:AX:1~76 2211,2213,2236~2237,2802
    rna:AZ:1~76 2678,2820,2862
    8126 6xiq:2
    (4.2Å)
    		 1743 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2C2D RF01960 Saccharomyces
    cerevisiae
    4932    		 32855298
    101

    441

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:1:3~3396 628,911,971~974,1644~1646,1654
    ~1657,1745~1748,1757~1760,1779
    ~1780
    rna:AX:1~76 1001,1191,1462,1575~1576,1637
    rna:AY:43~50 577,904,1150,1634~1638,1756
    rna:AZ:1~76 1274,1428~1429,1755~1756
    8127 6xiq:3
    (4.2Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000556CA5 RF00001 Saccharomyces
    cerevisiae
    4932    		 32855298 Assembly1
    rna:1:3~3396 79,81~82,86,90,101,103~104
    8128 6xiq:4
    (4.2Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 32855298
    441    		 Assembly1
    rna:1:3~3396 1~2,4~36,40~41,53,104,109~110,
    126,129,137~150,152~156
    8129 6xiq:AX
    (4.2Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 32855298 Assembly1
    rna:1:3~3396 70~71,73~74
    rna:2:1~1798 29,33~34,37,40~42
    rna:AY:43~50 34~35
    8130 6xiq:AZ
    (4.2Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 32855298 Assembly1
    rna:1:3~3396 56,73~75
    rna:2:1~1798 33~36
    8131 6xir:1
    (3.2Å)
    		 3113 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E1A1 RF02543 Saccharomyces
    cerevisiae
    4932    		 32855298
    M107_0.6

    M080_0.6

    M299_0.6

    16    		 Assembly1
    rna:3:1~121 996~998,1052,1054~1055,1156,11
    71,1197,1203
    rna:4:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656,691,1394~1395,1399,1419~14
    20,1530,1558,1830~1831,2386,25
    85,2994~2995
    rna:2:1~1798 846~848,2205,2255~2257,2260,22
    62~2263
    8132 6xir:2
    (3.2Å)
    		 1708 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00005F2C2D RF01960 Saccharomyces
    cerevisiae
    4932    		 32855298
    101

    441

    M080_0.6

    386

    M107_0.6

    497

    490    		 Assembly1
    rna:1:3~3396 628,913,971~973,1644~1646,1755
    ,1757~1758,1780
    rna:AX:1~73 1001,1191,1462,1575~1577,1637,
    1761
    8133 6xir:3
    (3.2Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000556CA5 RF00001 Saccharomyces
    cerevisiae
    4932    		 32855298 Assembly1
    rna:1:3~3396 79~81,86,90,100,102~104
    8134 6xir:4
    (3.2Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 32855298
    441    		 Assembly1
    rna:1:3~3396 1~22,24~33,35~37,40,53~54,104,
    109,114~115,136~157
    8135 6xir:AX
    (3.2Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 32855298 Assembly1
    rna:2:1~1798 30~31,34,36,38~39,41
    8136 6xmg:C
    (4.8Å)
    		 130 N/A URS00021ED9A6 N/A metagenome
    256318    		 33495647 Assembly1
    rna:E:1~24 113~117,119~136
    8137 6xmg:E
    (4.8Å)
    		 24 N/A URS00021ED93D N/A metagenome
    256318    		 33495647 Assembly1
    rna:C:1~136 1~12,14,16~24
    8138 6xn3:R
    (3.0Å)
    		 37 N/A URS00023119BC N/A Lactococcus
    lactis
    subsp.
    lactis
    1360    		 35351985 Assembly1
    rna:T:5~38 9~13,15~19,21~25,27~31,33~37
    8139 6xn3:T
    (3.0Å)
    		 34 N/A URS0002311A25 N/A Lactococcus
    lactis
    subsp.
    lactis
    1360    		 35351985 Assembly1
    rna:R:1~37 6~10,12~16,18~23,25~28,30~34
    8140 6xn4:R
    (3.35Å)
    		 35 N/A URS0002311A21 N/A Lactococcus
    lactis
    subsp.
    lactis
    1360    		 35351985 Assembly1
    rna:T:9~38 10~13,15~19,22~23,25,27,29~35
    8141 6xn4:T
    (3.35Å)
    		 30 N/A URS00023119A6 N/A Lactococcus
    lactis
    subsp.
    lactis
    1360    		 35351985 Assembly1
    rna:R:1~35 9~10,13~17,20~24,26~29,31~34
    8142 6xn7:R
    (3.47Å)
    		 37 N/A URS00023119BC N/A Lactococcus
    lactis
    subsp.
    lactis
    1360    		 35351985 Assembly1
    rna:T:5~41 4~7,9~13,15~19,21~25,27~31,33~
    37
    8143 6xn7:T
    (3.47Å)
    		 37 N/A URS0002311A14 N/A Lactococcus
    lactis
    subsp.
    lactis
    1360    		 35351985 Assembly1
    rna:R:1~37 6~9,11~16,18~22,24~28,30~34,36
    ~39
    8144 6xqd:1A
    (2.8Å)
    		 2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 32817463 Assembly1
    rna:1B:1~120 861~864,915~919,958
    rna:1a:4~1533 1689,1700~1704,1832,1836~1837,
    1846,1848,1895,1912~1913,1915~
    1916,1919~1920,1947~1949,1959~
    1961,2863~2864
    rna:1x:2~76 1907~1909,1922~1924,2251~2253,
    2255~2256,2450~2451,2602
    8145 6xqd:1B
    (2.8Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 32817463 Assembly1
    rna:1A:6~2897 78~81,90,97~102
    8146 6xqd:1a
    (2.8Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177 Thermus
    thermophilus
    HB8
    300852    		 32817463 Assembly1
    rna:1A:6~2897 702,783~784,899~900,1407~1409,
    1418,1429,1442A,1473~1475,1483
    ~1484,1493~1496,1517
    rna:1v:12~21 530,926,1400~1402,1492~1493,14
    98,1503,1505,1507
    rna:1x:2~76 790,966,1229~1230,1338~1341,14
    00
    8147 6xqd:1v
    (2.8Å)
    		 10 N/A N/A N/A Tequatrovirus
    T4
    10665    		 32817463 Assembly1
    rna:1a:4~1533 12~13,15~21
    rna:1x:2~76 16~18
    8148 6xqd:1x
    (2.8Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 32817463 Assembly1
    rna:1A:6~2897 2~3,11~13,24~25,74~76
    rna:1a:4~1533 29~32,34,38,40~41
    rna:1v:12~21 34~37
    8149 6xqd:2A
    (2.8Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 32817463 Assembly2
    rna:2B:1~120 861~864,915,917~919,958
    rna:2a:4~1532 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1916,1919~1920,
    1947~1950,1959~1961,2863~2864
    rna:2x:2~76 1907~1909,1922~1924,2251~2253,
    2255,2450~2451,2601~2602
    8150 6xqd:2B
    (2.8Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 32817463 Assembly2
    rna:2A:6~2897 78~81,90,97~98,100~102
    8151 6xqd:2a
    (2.8Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177 Thermus
    thermophilus
    HB8
    300852    		 32817463 Assembly2
    rna:2A:6~2897 702,783~784,899~900,1407~1409,
    1418,1420,1429~1430,1442A,1473
    ~1475,1483~1485,1493~1496,1517
    rna:2v:14~19 926,1400~1403,1498,1505~1506
    rna:2x:2~76 790,966,1229~1230,1338~1340,14
    00
    8152 6xqd:2x
    (2.8Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 32817463 Assembly2
    rna:2A:6~2897 2~3,11~13,24~25,74~76
    rna:2a:4~1532 30~32,34,38~41
    rna:2v:14~19 34~37
    8153 6xqe:1A
    (3.0Å)
    		 2871 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 32817463 Assembly1
    rna:1B:1~120 861~863,915,917~919,958
    rna:1a:4~1533 1689,1700~1701,1703~1704,1832,
    1836~1837,1846,1848,1912~1913,
    1915~1916,1919~1920,1947~1948,
    1959~1961,2863~2864
    rna:1x:2~76 1908~1909,1922~1924,2063~2064,
    2251~2253,2255~2256,2450~2451,
    2601~2602
    8154 6xqe:1B
    (3.0Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 32817463 Assembly1
    rna:1A:6~2897 78~81,90,97~101
    8155 6xqe:1a
    (3.0Å)
    		 1500 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177 Thermus
    thermophilus
    HB8
    300852    		 32817463 Assembly1
    rna:1A:6~2897 702,784,899~900,1407~1409,1418
    ,1429,1442A,1474~1475,1483~148
    4,1493~1496,1517
    rna:1v:12~21 530,926,1400~1401,1492~1493,14
    98,1503,1505,1507
    rna:1x:2~76 790,966,1229~1230,1338~1341,14
    00
    8156 6xqe:1v
    (3.0Å)
    		 10 N/A N/A N/A Tequatrovirus
    T4
    10665    		 32817463 Assembly1
    rna:1a:4~1533 13,16~19,21
    rna:1x:2~76 16~18
    8157 6xqe:1x
    (3.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 32817463 Assembly1
    rna:1A:6~2897 2~3,11~12,24~25,74~76
    rna:1a:4~1533 30~32,34,38~41
    rna:1v:12~21 34~37
    8158 6xqe:2A
    (3.0Å)
    		 2800 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001698E8 RF02541 Thermus
    thermophilus
    HB8
    300852    		 32817463 Assembly2
    rna:2B:1~120 861~864,915,917~919,958
    rna:2a:4~1532 1689,1700~1704,1832,1836~1837,
    1846,1848,1912~1913,1916,1919~
    1920,1947~1948,1959~1961,2863~
    2864
    rna:2x:2~76 1907~1908,1923~1924,2251~2253,
    2255,2451,2601~2602
    8159 6xqe:2B
    (3.0Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEE8 RF00001 Thermus
    thermophilus
    HB8
    300852    		 32817463 Assembly2
    rna:2A:6~2897 78~81,90,97~98,100~102
    8160 6xqe:2a
    (3.0Å)
    		 1503 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFED RF00177 Thermus
    thermophilus
    HB8
    300852    		 32817463 Assembly2
    rna:2A:6~2897 702,783~784,899~900,1407~1409,
    1418,1429~1430,1442A,1473~1475
    ,1483~1485,1493~1496,1517
    rna:2v:14~19 926,1400~1402,1498,1505~1506
    rna:2x:2~76 790,1229,1338~1340,1400
    8161 6xqe:2x
    (3.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000041AF00 RF00005 Escherichia
    coli
    562    		 32817463 Assembly2
    rna:2A:6~2897 2~3,12~13,24,74~76
    rna:2a:4~1532 30~32,34,38,40~41
    rna:2v:14~19 34~37
    8162 6xrq:A
    (1.21Å)
    		 14 N/A URS0001A16A80 N/A Pseudorabies
    virus
    Ea
    101947    		 38876382 Assembly1
    rna:B:1~14 1~2,5~7,9~10,12~13
    8163 6xrq:B
    (1.21Å)
    		 14 N/A URS0001A16A80 N/A Pseudorabies
    virus
    Ea
    101947    		 38876382 Assembly1
    rna:A:1~14 1~2,5~7,9~10,12~13
    8164 6xu6:A5
    (3.5Å)
    		 3707 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002311996 RF02543 Drosophila
    melanogaster
    7227    		 34283226
    M124_0.6

    M029_0.6

    M078_0.6

    M064_0.6

    M093_0.6

    M129_0.6

    M230_0.6

    M134_0.6

    M091_0.6

    M008_0.6

    M067_0.6

    M118_0.6

    M115_0.6

    M092_0.6    		 Assembly1
    rna:A9:1~30 1,4,6~25,151~152,1813,1902,311
    7
    rna:A7:1~120 1209~1212,1265,1267~1269,1370,
    1412,1417~1419
    rna:A8:1~123 18,25~27,63,348~355,357~360,36
    3~364,367,369,386~387,420,422~
    437,777~778,806~807,841,1635~1
    636,1660,1682,1773,1868~1869,2
    146~2148,2764,3526
    rna:B2:1~1995 1046~1048,2251~2252,2504~2505,
    2569,2573~2574,2633~2634,2637,
    2640~2641,2668~2670,2680~2682
    8165 6xu6:A7
    (3.5Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000016432F RF00001 Drosophila
    melanogaster
    7227    		 34283226
    M007_0.6    		 Assembly1
    rna:A5:1~3970 77~80,84,88,100~102
    8166 6xu6:A8
    (3.5Å)
    		 123 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061394B RF00002 Drosophila
    melanogaster
    7227    		 34283226 Assembly1
    rna:A9:1~30 103~104,114~122
    rna:A5:1~3970 1~21,23~32,34~36,39,101,106~10
    7,110~112,114
    8167 6xu6:A9
    (3.5Å)
    		 30 N/A URS0000243D00 N/A Drosophila
    melanogaster
    7227    		 34283226 Assembly1
    rna:A8:1~123 1~11
    rna:A5:1~3970 2,10~30
    8168 6xu6:B2
    (3.5Å)
    		 1936 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000030AF9A RF01960 Drosophila
    melanogaster
    7227    		 34283226
    M119_0.6

    M034_0.6

    M059_0.6

    M134_0.6

    M118_0.6

    M010_0.6

    M120_0.6

    M126_0.6    		 Assembly1
    rna:A5:1~3970 636~637,1058~1060,1082,1211,18
    36~1838,1847~1849,1859,1941~19
    42,1951~1954,1975
    8169 6xu7:A5
    (4.9Å)
    		 3707 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002311996 RF02543 Drosophila
    melanogaster
    7227    		 34283226
    M124_0.6

    M029_0.6

    M078_0.6

    M064_0.6

    M093_0.6

    M129_0.6

    M230_0.6

    M134_0.6

    M091_0.6

    M008_0.6

    M067_0.6

    M118_0.6

    M115_0.6

    M092_0.6    		 Assembly1
    rna:A9:1~30 1~2,4,6~16,19~25,151~152,1813,
    3117
    rna:A7:1~120 1209~1211,1214,1268~1269,1412,
    1418
    rna:A8:1~123 18,25~27,63,349~355,357~361,36
    4,367,369,386~387,422~426,428~
    432,435,437,777,806~807,841,16
    35~1636,1639~1640,1660,1682~16
    83,1773,2146~2147
    rna:B2:1~1995 1046~1048,2252,2504,2586,2633~
    2634,2636~2637,2640~2641,2668,
    2680~2682
    rna:B:1~75 1342~1343,2644,3152~3154,3156,
    3395~3396,3502
    8170 6xu7:A7
    (4.9Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000016432F RF00001 Drosophila
    melanogaster
    7227    		 34283226
    M007_0.6    		 Assembly1
    rna:A5:1~3970 77~80,84,88,98,100~101,103~104
    8171 6xu7:A8
    (4.9Å)
    		 123 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061394B RF00002 Drosophila
    melanogaster
    7227    		 34283226 Assembly1
    rna:A9:1~30 103~104,113~118,120~122
    rna:A5:1~3970 4~6,8~21,23~28,30~32,34~36,39~
    40,53,101,110~112,115
    8172 6xu7:A9
    (4.9Å)
    		 30 N/A URS0000243D00 N/A Drosophila
    melanogaster
    7227    		 34283226 Assembly1
    rna:A8:1~123 1~11
    rna:A5:1~3970 11,13,15~30
    8173 6xu7:B
    (4.9Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DDE9 RF00005 Drosophila
    melanogaster
    7227    		 34283226
    M131_0.6    		 Assembly1
    rna:B2:1~1995 29~30,33,37,40
    rna:A5:1~3970 2,12,72~75
    rna:v:25~36 33~36
    8174 6xu7:B2
    (4.9Å)
    		 1936 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000030AF9A RF01960 Drosophila
    melanogaster
    7227    		 34283226
    M119_0.6

    M034_0.6

    M059_0.6

    M134_0.6

    M118_0.6

    M010_0.6

    M120_0.6

    M126_0.6    		 Assembly1
    rna:A5:1~3970 636~637,1000,1059~1060,1836~18
    38,1847,1849,1859,1941~1942,19
    51,1953,1975
    rna:B:1~75 1088,1279,1654~1655,1767~1769,
    1829
    rna:v:25~36 991,1238,1361,1829,1956,1963
    8175 6xu7:v
    (4.9Å)
    		 12 N/A N/A N/A Drosophila
    melanogaster
    7227    		 34283226 Assembly1
    rna:B2:1~1995 26,28~31,35
    rna:B:1~75 29~31
    8176 6xu8:A5
    (3.0Å)
    		 3703 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002311A19 RF02543 Drosophila
    melanogaster
    7227    		 34283226
    M124_0.6

    M029_0.6

    M078_0.6

    M064_0.6

    M093_0.6

    M129_0.6

    M230_0.6

    M134_0.6

    M091_0.6

    M008_0.6

    M067_0.6

    M118_0.6

    M115_0.6

    M092_0.6    		 Assembly1
    rna:A9:1~30 1,4,7~25,151,3117
    rna:A7:1~120 1209~1212,1265~1268,1370,1412,
    1418
    rna:A8:1~123 18,25~27,63,199,348~355,357~36
    0,363~364,367,369,386~387,420,
    422~437,777,806~807,841,1635~1
    636,1639,1660,1682,1773,1868~1
    869,2146~2147,2764
    rna:B2:1~1995 1046,2251~2252,2504~2505,2569,
    2573,2585~2586,2633~2635,2637,
    2640~2641,2643,2668~2670,2680~
    2682
    8177 6xu8:A7
    (3.0Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000016432F RF00001 Drosophila
    melanogaster
    7227    		 34283226
    M007_0.6    		 Assembly1
    rna:A5:1~3970 77~79,84,88,100~102
    8178 6xu8:A8
    (3.0Å)
    		 123 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000061394B RF00002 Drosophila
    melanogaster
    7227    		 34283226 Assembly1
    rna:A9:1~30 103~104,113~122
    rna:A5:1~3970 2~21,23~32,34~36,39,52~53,68,1
    01,106,111~112
    8179 6xu8:A9
    (3.0Å)
    		 30 N/A URS0000243D00 N/A Drosophila
    melanogaster
    7227    		 34283226 Assembly1
    rna:A8:1~123 1~11
    rna:A5:1~3970 10~30
    8180 6xu8:B2
    (3.0Å)
    		 1936 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002311A0D RF01960 Drosophila
    melanogaster
    7227    		 34283226
    M119_0.6

    M034_0.6

    M059_0.6

    M134_0.6

    M118_0.6

    M010_0.6

    M120_0.6

    M126_0.6    		 Assembly1
    rna:A5:1~3970 636~637,999~1000,1058~1059,108
    1~1082,1089,1211,1836~1839,184
    7~1849,1859~1860,1941~1942,195
    1~1954,1975
    8181 6xur:A
    (1.1Å)
    		 12 N/A URS000080E0B7 N/A synthetic
    construct
    32630    		 31999864 Assembly1
    rna:A-2:1001~1012 1001~1012
    8182 6xus:A
    (1.1Å)
    		 12 N/A URS000080E0B7 N/A synthetic
    construct
    32630    		 31999864 Assembly1
    rna:A-2:1001~1012 1001~1012
    8183 6xyw:1
    (3.86Å)
    		 2842 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0001A16A87 RF02541 Arabidopsis
    thaliana
    3702    		 32251374 Assembly1
    rna:3:1~118 1005~1007,1062~1065,1098~1099,
    1297
    rna:2:5~1935 2036,2164,2223~2225,2230~2231,
    2258~2260,2270~2271
    8184 6xyw:2
    (3.86Å)
    		 1743 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0001A16A70 RF00177 Arabidopsis
    thaliana
    3702    		 32251374 Assembly1
    rna:1:16~3161 697,1756~1758,1767~1768,1870,1
    879,1888,1890~1891,1913
    8185 6xyw:3
    (3.86Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000240B4B RF00001 Arabidopsis
    thaliana
    3702    		 32251374 Assembly1
    rna:1:16~3161 81~83,90~91,95,97~98
    8186 6xz7:A
    (2.1Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632D RF02541 Escherichia
    coli
    K-12
    83333    		 32144191 Assembly1
    rna:B:1~120 861~863,915,917~919,958,2339
    rna:f:2~76 1907~1908,1923,2064,2251~2253,
    2450~2451,2602
    rna:g:1~76 896,2063,2451~2452,2470,2482,2
    506~2507,2553~2555,2583~2585
    8187 6xz7:B
    (2.1Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    K-12
    83333    		 32144191 Assembly1
    rna:A:1~2903 41,78~81,89,96~97,99~100
    8188 6xz7:f
    (2.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002905B5 RF00005 Escherichia
    coli
    K-12
    83333    		 32144191 Assembly1
    rna:A:1~2903 12~13,24,74~76
    8189 6xz7:g
    (2.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 32144191 Assembly1
    rna:A:1~2903 19,52,63,74~76
    8190 6xza:A1
    (2.66Å)
    		 1523 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177 Escherichia
    coli
    K-12
    83333    		 32144191 Assembly1
    rna:A2:1~2903 702,784,899,1408~1409,1418,142
    8~1429,1473~1475,1483~1484,149
    4~1495,1517
    rna:f2:2~76 790,1229~1230,1338~1340,1400
    8191 6xza:A2
    (2.66Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632D RF02541 Escherichia
    coli
    K-12
    83333    		 32144191 Assembly1
    rna:A1:1~1534 1686,1689,1700~1704,1832,1837,
    1846,1848,1895,1912~1913,1919~
    1920,1947~1949,1959~1960
    rna:B2:1~120 861~863,915,917~919,958,2339
    rna:f2:2~76 1907~1909,1922~1923,2064,2251~
    2253,2450~2451,2602
    8192 6xza:B2
    (2.66Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    K-12
    83333    		 32144191 Assembly1
    rna:A2:1~2903 41,78~81,89,96~97,99~100
    8193 6xza:f2
    (2.66Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002905B5 RF00005 Escherichia
    coli
    K-12
    83333    		 32144191 Assembly1
    rna:A1:1~1534 30~32,34,38~41
    rna:A2:1~2903 12,24,74~76
    8194 6xzb:A1
    (2.54Å)
    		 1523 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177 Escherichia
    coli
    K-12
    83333    		 32144191 Assembly1
    rna:A2:1~2903 702,784,899,1408~1409,1418,142
    9,1473~1475,1483~1484,1494~149
    5,1517
    rna:f2:2~76 790,1229~1230,1338~1340,1400
    rna:g2:1~76 530,1054,1492
    8195 6xzb:A2
    (2.54Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632D RF02541 Escherichia
    coli
    K-12
    83333    		 32144191 Assembly1
    rna:A1:1~1534 1689,1700~1703,1832,1837,1846,
    1848,1912~1913,1915~1916,1919~
    1920,1947~1949,1959~1961
    rna:B2:1~120 861~863,915,917~919,958,2339
    rna:f2:2~76 1907~1909,1922~1923,2064,2251~
    2253,2450~2451,2602
    rna:g2:1~76 896,2063,2451~2452,2470,2482,2
    506~2507,2553~2555,2583~2584
    8196 6xzb:B2
    (2.54Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    K-12
    83333    		 32144191 Assembly1
    rna:A2:1~2903 41,78~81,89,96~97,99~100
    8197 6xzb:f2
    (2.54Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002905B5 RF00005 Escherichia
    coli
    K-12
    83333    		 32144191 Assembly1
    rna:A1:1~1534 29~31,34,38~41
    rna:A2:1~2903 12~13,24,74~76
    8198 6xzb:g2
    (2.54Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 32144191 Assembly1
    rna:A1:1~1534 34~35,37
    rna:A2:1~2903 19,52,63,74~76
    8199 6y0g:A4
    (3.2Å)
    		 17 N/A N/A N/A Homo
    sapiens
    9606    		 32268098
    605

    1129

    596

    609

    332

    726

    775

    1074

    1093

    798

    1039

    1018

    1015

    1094

    1095

    1096

    1159

    1158

    772

    465

    611

    1098

    1135

    s95

    725

    765

    1069

    1284

    1287

    1286

    1061

    1063

    1065

    s101

    M232_0.6

    1106

    1243

    1242

    683

    720

    721

    686

    1108    		 Assembly1
    rna:B4:1~76 46~48
    rna:D4:1~76 49~52
    rna:S2:1~1869 42~43,45~51
    8200 6y0g:B4
    (3.2Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Homo
    sapiens
    9606    		 32268098
    1212

    1373    		 Assembly1
    rna:A4:42~58 34~37
    rna:L5:1~5069 11~12,24,74~76
    rna:S2:1~1869 30~31,34,38~41
    << < 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.