SEQ2FUN

FURNA
Download all results in tab-seperated text for 16611 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    8601 7ac7:7
    (3.08Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 34389707 Assembly1
    rna:1:1~2903 12,23,25,74~76
    rna:2:1~1540 29~31,34,37~39,41~42
    rna:8:1~15 34~37
    8602 7ac7:8
    (3.08Å)
    		 15 N/A N/A N/A Escherichia
    coli
    562    		 34389707 Assembly1
    rna:2:1~1540 1~8,10~15
    rna:7:1~76 13~15
    8603 7acj:1
    (3.2Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED9BC RF02541 Escherichia
    coli
    K-12
    83333    		 34389707 Assembly1
    rna:2:1~1534 1700,1702~1703,1831,1846,1848,
    1912~1913,1916,1919~1920,1947~
    1948,1959~1961
    rna:3:1~120 861~863,917~919,958~959
    rna:4:1~363 886~890,2063,2251~2253,2255,23
    08,2450~2451,2585,2602
    8604 7acj:2
    (3.2Å)
    		 1534 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000081169C RF00177 Escherichia
    coli
    K-12
    83333    		 34389707 Assembly1
    rna:1:1~2903 702,899,1407~1409,1418,1428~14
    29,1473~1474,1483~1484,1492,14
    94~1495,1517
    rna:4:1~363 1054,1196,1397,1493
    8605 7acj:3
    (3.2Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    K-12
    83333    		 34389707 Assembly1
    rna:1:1~2903 78~79,81,89,99~100
    8606 7acj:4
    (3.2Å)
    		 363 GO:0006401 (P) RNA catabolic process URS000037602E RF00023 Escherichia
    coli
    BL21(DE3)
    469008    		 34389707 Assembly1
    rna:1:1~2903 3,25,58~60,76,361~363
    rna:2:1~1534 90,92~94
    8607 7acr:1
    (3.44Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED9BC RF02541 Escherichia
    coli
    K-12
    83333    		 34389707 Assembly1
    rna:2:1~1534 1689,1700~1701,1703,1846,1848,
    1912~1913,1916,1919~1920,1947~
    1948,1959~1961
    rna:3:1~120 861~863,915~919,958~959
    rna:4:1~363 890,2063~2064,2251~2252,2255,2
    307,2451,2585
    8608 7acr:2
    (3.44Å)
    		 1534 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002311A31 RF00177 Escherichia
    coli
    K-12
    83333    		 34389707 Assembly1
    rna:1:1~2903 702,899,1407~1409,1418,1429,14
    73~1475,1483~1484,1492~1495,15
    17
    rna:4:1~363 1397,1493
    8609 7acr:3
    (3.44Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    K-12
    83333    		 34389707 Assembly1
    rna:1:1~2903 78~81,89,97,99~100
    8610 7acr:4
    (3.44Å)
    		 363 GO:0006401 (P) RNA catabolic process URS000037602E RF00023 Escherichia
    coli
    562    		 34389707 Assembly1
    rna:1:1~2903 3,26,60,361~363
    rna:2:1~1534 90,92~93
    8611 7ajt:D2
    (4.6Å)
    		 446 GO:0034463 (P) 90S preribosome assembly URS000007769E N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 33326748 Assembly1
    rna:D4:1~333 281~288,290~292,462~466,468,47
    0~479
    8612 7ajt:D3
    (4.6Å)
    		 1327 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED968 RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 33326748 Assembly1
    rna:D4:1~333 5,7~17,1111~1117,1119~1125
    8613 7ajt:D4
    (4.6Å)
    		 230 GO:0006396 (P) RNA processing
    GO:0005730 (C) nucleolus    		 URS0000B21E09 RF01846 Saccharomyces
    cerevisiae
    S288C
    559292    		 33326748 Assembly1
    rna:D2:1~489 39~40,42~55,62~69,71~73
    rna:D3:-7~1790 1~7,9~11,13,15~22,25~28
    8614 7aju:D2
    (3.8Å)
    		 81 N/A URS00021ED8F1 N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 33326748 Assembly1
    rna:D4:1~333 281~285,287~292,464~468,470~48
    0
    8615 7aju:D3
    (3.8Å)
    		 1409 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED8ED RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 33326748 Assembly1
    rna:D4:1~333 10~15,1110~1117,1119~1124
    8616 7aju:D4
    (3.8Å)
    		 223 GO:0006396 (P) RNA processing
    GO:0005730 (C) nucleolus    		 URS0000B21E09 RF01846 Saccharomyces
    cerevisiae
    S288C
    559292    		 33326748 Assembly1
    rna:D2:2~480 38~53,62~64,66~73
    rna:D3:3~1802 1,3~14,16~22
    8617 7am2:R2
    (3.4Å)
    		 34 N/A URS000080E1E9 N/A Leishmania
    tarentolae
    5689    		 33168716 Assembly1
    rna:R1:7~9 241~242
    rna:R5:1~5 122~126
    8618 7aor:2
    (3.5Å)
    		 470 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED9B9 RF02546
    RF02545    		 Trypanosoma
    cruzi
    strain
    CL
    Brener
    353153    		 33168716 Assembly1
    rna:A:395~537 394,538
    8619 7aor:A
    (3.5Å)
    		 143 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED9B9 RF02546
    RF02545    		 Trypanosoma
    cruzi
    strain
    CL
    Brener
    353153    		 33168716 Assembly1
    rna:2:1~613 395,537
    8620 7aqc:A
    (2.99Å)
    		 2820 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED9C6 RF02541 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259811 Assembly1
    rna:B:3~114 908~910,962~966,1004
    rna:P:1~76 1936~1937,1951~1952,2280~2282,
    2284,2479~2480,2614,2631
    rna:T:1~76 2501~2502,2536,2582~2585,2612~
    2614,2631
    8621 7aqc:B
    (2.99Å)
    		 112 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000BC467F RF00001 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259811 Assembly1
    rna:A:3~2925 76~79,87,95,97~98
    8622 7aqc:P
    (2.99Å)
    		 69 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002F180C RF00005 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259811 Assembly1
    rna:A:3~2925 3,12~13,24~25,74~76
    8623 7aqc:T
    (2.99Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002F180C RF00005 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259811 Assembly1
    rna:A:3~2925 53~54,62,73~76
    8624 7aqd:A
    (3.1Å)
    		 2918 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED996 RF02541 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259811 Assembly1
    rna:B:3~114 908~910,962~966,1004
    rna:T:1~76 928,944,2280~2282,2479~2480,25
    12,2631
    8625 7aqd:B
    (3.1Å)
    		 112 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000BC467F RF00001 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259811 Assembly1
    rna:A:3~2925 76~79,87,95,97~98
    8626 7aqd:T
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002F180C RF00005 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259811 Assembly1
    rna:A:3~2925 19,55~56,64,74~76
    8627 7as8:2
    (2.9Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002F180C RF00005 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259810 Assembly1
    rna:A:2~2926 74~76
    8628 7as8:A
    (2.9Å)
    		 2812 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED966 RF02541 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259810 Assembly1
    rna:2:1~76 2280~2282,2284,2479~2480,2631
    rna:B:3~114 908~911,964~966,1004~1005
    8629 7as8:B
    (2.9Å)
    		 112 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001CC3E3 RF00001 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259810 Assembly1
    rna:A:2~2926 76~79,87,98
    8630 7as9:2
    (3.5Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002F180C RF00005 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259810 Assembly1
    rna:A:2~2926 19,56,74~76
    8631 7as9:A
    (3.5Å)
    		 2812 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED966 RF02541 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259810 Assembly1
    rna:2:1~76 944~945,2280~2282,2479~2480,26
    14,2631
    rna:B:3~114 908~911,962,964~966,1004
    8632 7as9:B
    (3.5Å)
    		 112 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001CC3E3 RF00001 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259810 Assembly1
    rna:A:2~2926 76~79,87,95,97~98
    8633 7ase:0
    (3.33Å)
    		 2150 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000CBFF1F RF01960 Trypanosoma
    cruzi
    5693    		 33357443 Assembly1
    rna:1:1~75 1664,1984,2114~2116
    8634 7ase:1
    (3.33Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00021ED904 RF00005 Trypanosoma
    cruzi
    5693    		 33357443 Assembly1
    rna:0:1~2323 29~30,33,39~40
    8635 7asm:A
    (2.48Å)
    		 2834 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001C3329 RF02541 Staphylococcus
    aureus
    1280    		 35348349 Assembly1
    rna:B:1~115 906~908,960,962~964
    8636 7asm:B
    (2.48Å)
    		 115 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000062A7E RF00001 Staphylococcus
    aureus
    1280    		 35348349 Assembly1
    rna:A:3~2920 76~78,93~94,97
    8637 7asn:A
    (2.73Å)
    		 2742 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119DB RF02541 Staphylococcus
    aureus
    1280    		 35348349 Assembly1
    rna:B:4~115 907~908,960~964,994
    8638 7asn:B
    (2.73Å)
    		 106 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002311A28 RF00001 Staphylococcus
    aureus
    1280    		 35348349 Assembly1
    rna:A:3~2920 76,78~79,85,94,96~98
    8639 7aso:C
    (3.11Å)
    		 114 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003DF33D RF00001 Staphylococcus
    aureus
    1280    		 35348349 Assembly1
    rna:Y:3~2920 76~79,86,96~97
    8640 7aso:X
    (3.11Å)
    		 1415 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119D5 RF00177 Staphylococcus
    aureus
    1280    		 35348349 Assembly1
    rna:Y:3~2920 256,283,285,709,711,1418,1428,
    1431~1432,1439~1440,1498,1506
    8641 7aso:Y
    (3.11Å)
    		 2720 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119FC RF02541 Staphylococcus
    aureus
    1280    		 35348349 Assembly1
    rna:C:1~114 906~908,962~963,995
    rna:X:5~1544 756~757,765~766,1747~1748,1873
    ,1875,1946,1975~1977,1987~1988
    8642 7asp:3
    (2.86Å)
    		 114 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003DF33D RF00001 Staphylococcus
    aureus
    1280    		 35348349 Assembly1
    rna:Y:3~2920 39,76~78,85~87,96
    8643 7asp:X
    (2.86Å)
    		 1447 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000066D7CD RF00177 Staphylococcus
    aureus
    1280    		 35348349 Assembly1
    rna:Y:3~2920 708~712,1418~1419,1429,1506,15
    08,1529
    8644 7asp:Y
    (2.86Å)
    		 2723 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001450D9 RF02541 Staphylococcus
    aureus
    1280    		 35348349 Assembly1
    rna:X:5~1544 1873~1876,1920~1923,1940~1941,
    1986~1987
    rna:3:1~114 906~908,962~963,994~995,1002,2
    367
    8645 7azo:16SA
    (3.3Å)
    		 1512 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000901708 RF00177 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly1
    rna:ASIA:1~76 1159~1160,1682,2116
    rna:PSIA:1~76 1419,1589,1856~1857,1965~1967,
    2028
    rna:ESIA:1~76 1322~1323,1559~1560,2010~2011
    rna:MRNA:28~57 1159,1322,1352,1549,1823,2025,
    2028~2030,2115~2116,2121,2128,
    2130,2154~2163
    rna:23SA:2~2914 1331,1412~1413,1522,2035~2037,
    2046,2057~2058,2071,2096~2098,
    2106~2107,2116~2119,2140
    8646 7azo:16SB
    (3.3Å)
    		 1508 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000901708 RF00177 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly2
    rna:ASIB:1~76 1159~1160,1682,2116
    rna:PSIB:1~76 1419,1589,1856~1857,1965~1968,
    2028
    rna:ESIB:1~76 1322~1323,1560,1967,2010~2011
    rna:MRNB:28~57 1159,1322,1352,1549,1823,2025,
    2028~2030,2115~2116,2121,2126,
    2128,2130,2154~2162
    rna:23SB:2~2914 1331,1412~1413,1522~1523,2035~
    2037,2046,2057,2071,2096~2097,
    2106~2107,2116~2119,2140
    8647 7azo:23SA
    (3.3Å)
    		 2889 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023359AD RF02541 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly1
    rna:16SA:652~2163 1751~1754,1866,1870~1871,1880,
    1882,1937~1938,1940~1941,1944~
    1945,1972~1973,1984~1986,2876~
    2877
    rna:ASIA:1~76 930~932,944~945,1938,2498,2521
    ~2522,2568,2570,2598~2600,2617
    rna:PSIA:1~76 1932~1934,1947~1949,2089,2266~
    2268,2465~2466,2616~2617
    rna:ESIA:1~76 1884~1886,1917~1918,2137,2409~
    2410,2436~2437,2447
    rna:5SA:1~122 910~912,963~967,1005
    8648 7azo:23SB
    (3.3Å)
    		 2873 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023359AD RF02541 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly2
    rna:16SB:652~2162 1751~1754,1866,1870~1871,1880,
    1882,1937~1938,1940~1941,1944~
    1945,1972~1973,1984~1986
    rna:ASIB:1~76 930~931,944~945,1938,2467,2522
    ,2568~2570,2598~2599,2617
    rna:PSIB:1~76 1932~1934,1947~1949,2089,2266~
    2268,2465~2466,2616~2617
    rna:ESIB:1~76 1884~1886,1917~1918,2409~2410,
    2436~2437,2447
    rna:5SB:2~122 910~913,963,965~967,1005,1074
    8649 7azo:5SA
    (3.3Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E212 RF00001 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly1
    rna:TRNA:1~73 1~2,122
    rna:23SA:2~2914 80~83,92,99~103
    8650 7azo:5SB
    (3.3Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E212 RF00001 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly2
    rna:23SB:2~2914 80~83,90,92,100,102~103
    8651 7azo:ASIA
    (3.3Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly1
    rna:16SA:652~2163 34~37
    rna:MRNA:28~57 34~37
    rna:23SA:2~2914 19,37~38,55~56,64,74~76
    8652 7azo:ASIB
    (3.3Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly2
    rna:16SB:652~2162 34~37
    rna:MRNB:28~57 34~37
    rna:23SB:2~2914 17,19,37~38,55~56,74~76
    8653 7azo:ESIA
    (3.3Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly1
    rna:16SA:652~2163 34,37~38
    rna:MRNA:28~57 36~37
    rna:23SA:2~2914 3~4,19,56,70~72,76
    8654 7azo:ESIB
    (3.3Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly2
    rna:16SB:652~2162 34,36~38
    rna:MRNB:28~57 36~37
    rna:23SB:2~2914 4,70~72,76
    8655 7azo:MRNA
    (3.3Å)
    		 30 N/A URS0002335939 N/A Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly1
    rna:16SA:652~2163 32~43,45~53
    rna:ASIA:1~76 49~51
    rna:PSIA:1~76 46~48
    rna:ESIA:1~76 43~44
    8656 7azo:MRNB
    (3.3Å)
    		 30 N/A URS0002335939 N/A Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly2
    rna:16SB:652~2162 33~43,45~53
    rna:ASIB:1~76 49~52
    rna:PSIB:1~76 46~48
    rna:ESIB:1~76 43~44
    8657 7azo:PSIA
    (3.3Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly1
    rna:16SA:652~2163 30~32,34,37~38,40~41
    rna:MRNA:28~57 34~37
    rna:23SA:2~2914 11~13,24~25,74~76
    8658 7azo:PSIB
    (3.3Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly2
    rna:16SB:652~2162 29~32,34,37~38,40~41
    rna:MRNB:28~57 34~37
    rna:23SB:2~2914 11~13,24~25,74~76
    8659 7azo:TRNA
    (3.3Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly1
    rna:5SA:1~122 19~20,48,57
    8660 7azs:16SA
    (3.1Å)
    		 1511 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000901708 RF00177 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly1
    rna:ASIA:1~76 1159~1160,1682,2116
    rna:PSIA:1~76 1419,1589,1856,1965~1967,2028
    rna:ESIA:1~76 1322~1323,1559,2010~2011
    rna:MRNA:28~57 1159,1322,1352,1549,1823,2025,
    2028~2030,2115~2116,2121,2128,
    2130,2154~2162
    rna:23SA:2~2914 1331,1412~1413,1522,2035~2037,
    2046,2048,2057,2071,2096,2098,
    2106~2107,2117~2119,2140
    8661 7azs:16SB
    (3.1Å)
    		 1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000901708 RF00177 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly2
    rna:ASIB:1~76 1159~1160,1682,2116
    rna:PSIB:1~76 1419,1589,1856~1857,1965~1967,
    2028
    rna:ESIB:1~76 1322~1323,1967,2010
    rna:MRNB:28~57 1159,1322,1352,1549,1823,2025,
    2029~2030,2115~2116,2121,2126,
    2128,2130,2153~2161
    rna:23SB:2~2914 1331,1412~1413,1522~1523,2035~
    2037,2046,2057,2071,2096~2098,
    2106~2107,2116~2119,2140
    8662 7azs:23SA
    (3.1Å)
    		 2889 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023359AD RF02541 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly1
    rna:16SA:652~2162 1739,1752~1754,1866,1870~1871,
    1882,1937~1938,1940~1941,1944~
    1945,1972~1973,1975,1984~1986,
    2876~2877
    rna:ASIA:1~76 930~932,944~945,1938,2521~2522
    ,2568,2570,2598~2600,2617
    rna:PSIA:1~76 1932~1934,1947~1949,2089,2266~
    2268,2465~2466,2616~2617
    rna:ESIA:1~76 1884~1886,1917~1918,2137,2409~
    2410,2436~2437,2447
    rna:5SA:1~122 910~912,963,965~967,1005
    8663 7azs:23SB
    (3.1Å)
    		 2875 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023359AD RF02541 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly2
    rna:16SB:652~2161 1739,1751~1754,1866,1870~1871,
    1880,1882,1937~1938,1940~1941,
    1944~1945,1972~1974,1984~1986,
    2877
    rna:ASIB:1~76 930~931,944~945,1938,2467,2522
    ,2568~2569,2598~2599,2617
    rna:PSIB:1~76 1932~1934,1947~1949,2089,2266~
    2268,2465~2466,2616~2617
    rna:ESIB:1~76 1885,1917~1918,2409~2410,2436~
    2437
    rna:5SB:2~122 910~913,963,965~967,1005,1074
    8664 7azs:5SA
    (3.1Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E212 RF00001 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly1
    rna:TRNA:1~73 1~3,122
    rna:23SA:2~2914 80~83,92,99~103
    8665 7azs:5SB
    (3.1Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E212 RF00001 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly2
    rna:23SB:2~2914 80~83,90,92,100,102~103
    8666 7azs:ASIA
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly1
    rna:16SA:652~2162 34~37
    rna:MRNA:28~57 34~37
    rna:23SA:2~2914 19,37,55~56,74~76
    8667 7azs:ASIB
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly2
    rna:16SB:652~2161 34~37
    rna:MRNB:28~57 34~37
    rna:23SB:2~2914 17,19,37~38,55~56,64,74~76
    8668 7azs:ESIA
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly1
    rna:16SA:652~2162 34,37~38
    rna:MRNA:28~57 36~37
    rna:23SA:2~2914 3~4,19,56,70~72,76
    8669 7azs:ESIB
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly2
    rna:16SB:652~2161 34,36~38
    rna:MRNB:28~57 36~37
    rna:23SB:2~2914 4,71,76
    8670 7azs:MRNA
    (3.1Å)
    		 30 N/A URS0002335939 N/A Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly1
    rna:16SA:652~2162 33~43,45~53
    rna:ASIA:1~76 49~51
    rna:PSIA:1~76 46~48
    rna:ESIA:1~76 43~44
    8671 7azs:MRNB
    (3.1Å)
    		 30 N/A URS0002335939 N/A Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly2
    rna:16SB:652~2161 34~43,45~46,48~53
    rna:ASIB:1~76 49~52
    rna:PSIB:1~76 46~48
    rna:ESIB:1~76 43~44
    8672 7azs:PSIA
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly1
    rna:16SA:652~2162 30~32,34,37~38,40~41
    rna:MRNA:28~57 34~37
    rna:23SA:2~2914 11~13,24~25,74~76
    8673 7azs:PSIB
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly2
    rna:16SB:652~2161 30~32,34,37~38,40~41
    rna:MRNB:28~57 34~37
    rna:23SB:2~2914 11~13,24~25,74~76
    8674 7azs:TRNA
    (3.1Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly1
    rna:5SA:1~122 19~20,57
    8675 7azy:E
    (2.877Å)
    		 3161 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119CC RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 33990576 Assembly1
    rna:F:1~121 996~998,1052,1054~1056,1156,11
    71,1197,1203
    rna:G:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,398,404~
    419,691,1394~1395,1398~1399,14
    18~1420,1441,1530,1558,1584~15
    85,1618,1830~1831,2386,2585,29
    94~2995
    8676 7azy:F
    (2.877Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 33990576 Assembly1
    rna:E:3~3396 79~82,86,90,100,102~103
    8677 7azy:G
    (2.877Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 33990576 Assembly1
    rna:E:3~3396 1~2,4~22,24~33,35~37,40~41,52~
    54,104,109,114~115,126,129,136
    ~157
    8678 7b0y:P
    (3.6Å)
    		 36 N/A URS00021ED8F6 N/A synthetic
    construct
    32630    		 33446560 Assembly1
    rna:a:1~164 113~124
    8679 7b0y:a
    (3.6Å)
    		 164 GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0005685 (C) U1 snRNP    		 URS000032B6B6 RF00003 Homo
    sapiens
    9606    		 33446560
    121

    M319_0.6

    1184

    1202

    518

    s52

    509

    1031

    760    		 Assembly1
    rna:P:110~145 1~11
    8680 7b3b:P
    (3.1Å)
    		 10 N/A URS00021ED945 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 33436624 Assembly1
    rna:T:7~18 6~15
    8681 7b3b:T
    (3.1Å)
    		 12 N/A URS00021ED9CA N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 33436624 Assembly1
    rna:P:6~15 9~18
    8682 7b3c:P
    (3.4Å)
    		 11 N/A URS00021ED941 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 33436624 Assembly1
    rna:T:8~19 5~15
    8683 7b3c:T
    (3.4Å)
    		 12 N/A URS00021ED994 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 33436624 Assembly1
    rna:P:5~15 9~19
    8684 7b3d:P
    (2.8Å)
    		 10 N/A URS00021ED95E N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 33436624 Assembly1
    rna:T:7~18 6~15
    8685 7b3d:T
    (2.8Å)
    		 12 N/A URS00021ED994 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 33436624 Assembly1
    rna:P:6~15 9~18
    8686 7b5k:6
    (2.9Å)
    		 11 N/A N/A N/A Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:a:1~1533 22,24~27,29~32
    rna:x:1~77 25~27
    rna:z:2~77 28~31
    8687 7b5k:9
    (2.9Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000B4C48A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:A:1~2903 19,56,71,76
    8688 7b5k:A
    (2.9Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632D RF02541 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:B:1~120 861~863,915,917~918,958
    rna:a:1~1533 1700~1704,1832,1837,1846,1848,
    1912~1913,1915~1916,1919~1920,
    1947~1948,1959~1960
    rna:x:1~77 1907~1909,1923,2251~2253,2439,
    2450~2451,2602
    rna:z:2~77 896~897,1913,2482~2483,2553,26
    02
    rna:9:1~76 1851,2112,2168,2394~2395,2421~
    2422
    8689 7b5k:B
    (2.9Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:A:1~2903 78~80,89,96~97,99~100
    8690 7b5k:a
    (2.9Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119B9 RF00177 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:A:1~2903 702,784,899,1407~1409,1418,142
    9,1473~1475,1483~1484,1493~149
    6,1517
    rna:x:1~77 790,966,1229~1230,1338~1340,14
    00
    rna:z:2~77 530,1054,1493
    rna:6:22~32 530,693,926,1196,1397,1400~140
    1,1492~1493,1498
    8691 7b5k:x
    (2.9Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0001A0F008 RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:A:1~2903 11~13,25,75~77
    rna:a:1~1533 31~32,35,39,41~42
    rna:6:22~32 35~38
    8692 7b5k:z
    (2.9Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000231199E RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:A:1~2903 20,38~39,64,77
    rna:a:1~1533 35~38
    rna:6:22~32 35~37
    8693 7b7d:2
    (3.3Å)
    		 1771 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0001A16A6A RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:1:1~7 577,1150,1634,1637,1755~1756,1
    761,1768
    rna:LA:3~3396 628~629,913,971~972,994~995,11
    23,1644~1646,1655~1657,1667,17
    46~1747,1756~1759,1780
    rna:Sn:1~76 1001,1191,1462~1463,1576~1577,
    1637
    rna:Sm:1~76 577,1274,1756
    8694 7b7d:LA
    (3.3Å)
    		 3223 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0001A16A8B RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:2:1~1799 846~847,1935~1936,2125,2195~21
    96,2205,2207,2255~2259,2262~22
    63,2290~2292,2302~2303
    rna:LB:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1203
    rna:LC:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1397~139
    9,1418~1419,1441,1530,1584,161
    8,1830~1832,2386,2585,2994~299
    5
    rna:Sn:1~76 2266~2267,2619~2621,2819~2820,
    2971
    rna:Sm:1~76 2256,2285~2286,2821,2839,2851,
    2876,2922~2924,2942,2952~2954
    8695 7b7d:LB
    (3.3Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:LA:3~3396 79~82,86,90,100,102~104
    8696 7b7d:LC
    (3.3Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:LA:3~3396 1,3~22,24~37,40~41,53~54,104,1
    09,113~115,126,129,136~155,157
    8697 7b7d:Sm
    (3.3Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00021ED942 RF00005 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:2:1~1799 34~37
    rna:1:1~7 35~37
    rna:LA:3~3396 38,52,63~64,72~76
    8698 7b7d:Sn
    (3.3Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00021ED942 RF00005 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:2:1~1799 30~31,34,38,40~41
    rna:1:1~7 34~37
    rna:LA:3~3396 12,74~76
    8699 7b9v:2
    (2.8Å)
    		 196 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS000023C730 RF00004 Saccharomyces
    cerevisiae
    4932    		 33705709
    9    		 Assembly1
    rna:6:1~102 6~13,16~17,21~23,26~29
    rna:I:1~92 31,33~47
    8700 7b9v:5
    (2.8Å)
    		 178 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000053F313 RF00020 Saccharomyces
    cerevisiae
    4932    		 33705709 Assembly1
    rna:6:1~102 98~100
    rna:E:-14~-1 97~100
    << < 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.