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FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    8601 7aor:A
    (3.5Å)
    		 143 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED9B9 RF02546
    RF02545    		 Trypanosoma
    cruzi
    strain
    CL
    Brener
    353153    		 33168716 Assembly1
    rna:2:1~613 395,537
    8602 7aqc:A
    (2.99Å)
    		 2820 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED9C6 RF02540
    RF02541
    RF00002    		 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259811 Assembly1
    rna:B:3~114 908~910,962~966,1004
    rna:P:1~76 1936~1937,1951~1952,2280~2282,
    2284,2479~2480,2614,2631
    rna:T:1~76 2501~2502,2536,2582~2585,2612~
    2614,2631
    8603 7aqc:B
    (2.99Å)
    		 112 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000BC467F RF00001 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259811 Assembly1
    rna:A:3~2925 76~79,87,95,97~98
    8604 7aqc:P
    (2.99Å)
    		 69 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002F180C RF00005 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259811 Assembly1
    rna:A:3~2925 3,12~13,24~25,74~76
    8605 7aqc:T
    (2.99Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002F180C RF00005 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259811 Assembly1
    rna:A:3~2925 53~54,62,73~76
    8606 7aqd:A
    (3.1Å)
    		 2918 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED996 RF02540
    RF02541
    RF00002    		 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259811 Assembly1
    rna:B:3~114 908~910,962~966,1004
    rna:T:1~76 928,944,2280~2282,2479~2480,25
    12,2631
    8607 7aqd:B
    (3.1Å)
    		 112 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000BC467F RF00001 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259811 Assembly1
    rna:A:3~2925 76~79,87,95,97~98
    8608 7aqd:T
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002F180C RF00005 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259811 Assembly1
    rna:A:3~2925 19,55~56,64,74~76
    8609 7as8:2
    (2.9Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002F180C RF00005 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259810 Assembly1
    rna:A:2~2926 74~76
    8610 7as8:A
    (2.9Å)
    		 2812 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED966 RF02540
    RF02541
    RF00002    		 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259810 Assembly1
    rna:2:1~76 2280~2282,2284,2479~2480,2631
    rna:B:3~114 908~911,964~966,1004~1005
    8611 7as8:B
    (2.9Å)
    		 112 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001CC3E3 RF00001 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259810 Assembly1
    rna:A:2~2926 76~79,87,98
    8612 7as9:2
    (3.5Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002F180C RF00005 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259810 Assembly1
    rna:A:2~2926 19,56,74~76
    8613 7as9:A
    (3.5Å)
    		 2812 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED966 RF02540
    RF02541
    RF00002    		 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259810 Assembly1
    rna:2:1~76 944~945,2280~2282,2479~2480,26
    14,2631
    rna:B:3~114 908~911,962,964~966,1004
    8614 7as9:B
    (3.5Å)
    		 112 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001CC3E3 RF00001 Bacillus
    subtilis
    subsp.
    subtilis
    str.
    168
    224308    		 33259810 Assembly1
    rna:A:2~2926 76~79,87,95,97~98
    8615 7ase:0
    (3.33Å)
    		 2150 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000CBFF1F RF01960
    RF01959
    RF00177    		 Trypanosoma
    cruzi
    5693    		 33357443 Assembly1
    rna:1:1~75 1664,1984,2114~2116
    8616 7ase:1
    (3.33Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00021ED904 RF00005 Trypanosoma
    cruzi
    5693    		 33357443 Assembly1
    rna:0:1~2323 29~30,33,39~40
    8617 7asm:A
    (2.48Å)
    		 2834 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001C3329 RF02540
    RF02541
    RF00002    		 Staphylococcus
    aureus
    1280    		 N/A Assembly1
    rna:B:1~115 906~908,960,962~964
    8618 7asm:B
    (2.48Å)
    		 115 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000062A7E RF00001 Staphylococcus
    aureus
    1280    		 N/A Assembly1
    rna:A:3~2920 76~78,93~94,97
    8619 7asn:A
    (2.73Å)
    		 2742 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119DB RF02540
    RF02541
    RF00002    		 Staphylococcus
    aureus
    1280    		 N/A Assembly1
    rna:B:4~115 907~908,960~964,994
    8620 7asn:B
    (2.73Å)
    		 106 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002311A28 RF00001 Staphylococcus
    aureus
    1280    		 N/A Assembly1
    rna:A:3~2920 76,78~79,85,94,96~98
    8621 7aso:C
    (3.11Å)
    		 114 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003DF33D RF00001 Staphylococcus
    aureus
    1280    		 N/A Assembly1
    rna:Y:3~2920 76~79,86,96~97
    8622 7aso:X
    (3.11Å)
    		 1415 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119D5 RF00177
    RF01959
    RF01960    		 Staphylococcus
    aureus
    1280    		 N/A Assembly1
    rna:Y:3~2920 256,283,285,709,711,1418,1428,
    1431~1432,1439~1440,1498,1506
    8623 7aso:Y
    (3.11Å)
    		 2720 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119FC RF02540
    RF02541    		 Staphylococcus
    aureus
    1280    		 N/A Assembly1
    rna:C:1~114 906~908,962~963,995
    rna:X:5~1544 756~757,765~766,1747~1748,1873
    ,1875,1946,1975~1977,1987~1988
    8624 7asp:3
    (2.86Å)
    		 114 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003DF33D RF00001 Staphylococcus
    aureus
    1280    		 N/A Assembly1
    rna:Y:3~2920 39,76~78,85~87,96
    8625 7asp:X
    (2.86Å)
    		 1447 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000066D7CD RF00177
    RF01959
    RF01960    		 Staphylococcus
    aureus
    1280    		 N/A Assembly1
    rna:Y:3~2920 708~712,1418~1419,1429,1506,15
    08,1529
    8626 7asp:Y
    (2.86Å)
    		 2723 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001450D9 RF02540
    RF02541    		 Staphylococcus
    aureus
    1280    		 N/A Assembly1
    rna:X:5~1544 1873~1876,1920~1923,1940~1941,
    1986~1987
    rna:3:1~114 906~908,962~963,994~995,1002,2
    367
    8627 7azo:16SA
    (3.3Å)
    		 1512 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000901708 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly1
    rna:ASIA:1~76 1159~1160,1682,2116
    rna:PSIA:1~76 1419,1589,1856~1857,1965~1967,
    2028
    rna:ESIA:1~76 1322~1323,1559~1560,2010~2011
    rna:MRNA:28~57 1159,1322,1352,1549,1823,2025,
    2028~2030,2115~2116,2121,2128,
    2130,2154~2163
    rna:23SA:2~2914 1331,1412~1413,1522,2035~2037,
    2046,2057~2058,2071,2096~2098,
    2106~2107,2116~2119,2140
    8628 7azo:16SB
    (3.3Å)
    		 1508 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000901708 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly2
    rna:ASIB:1~76 1159~1160,1682,2116
    rna:PSIB:1~76 1419,1589,1856~1857,1965~1968,
    2028
    rna:ESIB:1~76 1322~1323,1560,1967,2010~2011
    rna:MRNB:28~57 1159,1322,1352,1549,1823,2025,
    2028~2030,2115~2116,2121,2126,
    2128,2130,2154~2162
    rna:23SB:2~2914 1331,1412~1413,1522~1523,2035~
    2037,2046,2057,2071,2096~2097,
    2106~2107,2116~2119,2140
    8629 7azo:23SA
    (3.3Å)
    		 2889 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023359AD RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly1
    rna:16SA:652~2163 1751~1754,1866,1870~1871,1880,
    1882,1937~1938,1940~1941,1944~
    1945,1972~1973,1984~1986,2876~
    2877
    rna:ASIA:1~76 930~932,944~945,1938,2498,2521
    ~2522,2568,2570,2598~2600,2617
    rna:PSIA:1~76 1932~1934,1947~1949,2089,2266~
    2268,2465~2466,2616~2617
    rna:ESIA:1~76 1884~1886,1917~1918,2137,2409~
    2410,2436~2437,2447
    rna:5SA:1~122 910~912,963~967,1005
    8630 7azo:23SB
    (3.3Å)
    		 2873 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023359AD RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly2
    rna:16SB:652~2162 1751~1754,1866,1870~1871,1880,
    1882,1937~1938,1940~1941,1944~
    1945,1972~1973,1984~1986
    rna:ASIB:1~76 930~931,944~945,1938,2467,2522
    ,2568~2570,2598~2599,2617
    rna:PSIB:1~76 1932~1934,1947~1949,2089,2266~
    2268,2465~2466,2616~2617
    rna:ESIB:1~76 1884~1886,1917~1918,2409~2410,
    2436~2437,2447
    rna:5SB:2~122 910~913,963,965~967,1005,1074
    8631 7azo:5SA
    (3.3Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E212 RF00001 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly1
    rna:TRNA:1~73 1~2,122
    rna:23SA:2~2914 80~83,92,99~103
    8632 7azo:5SB
    (3.3Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E212 RF00001 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly2
    rna:23SB:2~2914 80~83,90,92,100,102~103
    8633 7azo:ASIA
    (3.3Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly1
    rna:16SA:652~2163 34~37
    rna:MRNA:28~57 34~37
    rna:23SA:2~2914 19,37~38,55~56,64,74~76
    8634 7azo:ASIB
    (3.3Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly2
    rna:16SB:652~2162 34~37
    rna:MRNB:28~57 34~37
    rna:23SB:2~2914 17,19,37~38,55~56,74~76
    8635 7azo:ESIA
    (3.3Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly1
    rna:16SA:652~2163 34,37~38
    rna:MRNA:28~57 36~37
    rna:23SA:2~2914 3~4,19,56,70~72,76
    8636 7azo:ESIB
    (3.3Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly2
    rna:16SB:652~2162 34,36~38
    rna:MRNB:28~57 36~37
    rna:23SB:2~2914 4,70~72,76
    8637 7azo:MRNA
    (3.3Å)
    		 30 N/A URS0002335939 N/A Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly1
    rna:16SA:652~2163 32~43,45~53
    rna:ASIA:1~76 49~51
    rna:PSIA:1~76 46~48
    rna:ESIA:1~76 43~44
    8638 7azo:MRNB
    (3.3Å)
    		 30 N/A URS0002335939 N/A Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly2
    rna:16SB:652~2162 33~43,45~53
    rna:ASIB:1~76 49~52
    rna:PSIB:1~76 46~48
    rna:ESIB:1~76 43~44
    8639 7azo:PSIA
    (3.3Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly1
    rna:16SA:652~2163 30~32,34,37~38,40~41
    rna:MRNA:28~57 34~37
    rna:23SA:2~2914 11~13,24~25,74~76
    8640 7azo:PSIB
    (3.3Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly2
    rna:16SB:652~2162 29~32,34,37~38,40~41
    rna:MRNB:28~57 34~37
    rna:23SB:2~2914 11~13,24~25,74~76
    8641 7azo:TRNA
    (3.3Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly1
    rna:5SA:1~122 19~20,48,57
    8642 7azs:16SA
    (3.1Å)
    		 1511 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000901708 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly1
    rna:ASIA:1~76 1159~1160,1682,2116
    rna:PSIA:1~76 1419,1589,1856,1965~1967,2028
    rna:ESIA:1~76 1322~1323,1559,2010~2011
    rna:MRNA:28~57 1159,1322,1352,1549,1823,2025,
    2028~2030,2115~2116,2121,2128,
    2130,2154~2162
    rna:23SA:2~2914 1331,1412~1413,1522,2035~2037,
    2046,2048,2057,2071,2096,2098,
    2106~2107,2117~2119,2140
    8643 7azs:16SB
    (3.1Å)
    		 1507 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000901708 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly2
    rna:ASIB:1~76 1159~1160,1682,2116
    rna:PSIB:1~76 1419,1589,1856~1857,1965~1967,
    2028
    rna:ESIB:1~76 1322~1323,1967,2010
    rna:MRNB:28~57 1159,1322,1352,1549,1823,2025,
    2029~2030,2115~2116,2121,2126,
    2128,2130,2153~2161
    rna:23SB:2~2914 1331,1412~1413,1522~1523,2035~
    2037,2046,2057,2071,2096~2098,
    2106~2107,2116~2119,2140
    8644 7azs:23SA
    (3.1Å)
    		 2889 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023359AD RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly1
    rna:16SA:652~2162 1739,1752~1754,1866,1870~1871,
    1882,1937~1938,1940~1941,1944~
    1945,1972~1973,1975,1984~1986,
    2876~2877
    rna:ASIA:1~76 930~932,944~945,1938,2521~2522
    ,2568,2570,2598~2600,2617
    rna:PSIA:1~76 1932~1934,1947~1949,2089,2266~
    2268,2465~2466,2616~2617
    rna:ESIA:1~76 1884~1886,1917~1918,2137,2409~
    2410,2436~2437,2447
    rna:5SA:1~122 910~912,963,965~967,1005
    8645 7azs:23SB
    (3.1Å)
    		 2875 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023359AD RF02540
    RF02541
    RF00002    		 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly2
    rna:16SB:652~2161 1739,1751~1754,1866,1870~1871,
    1880,1882,1937~1938,1940~1941,
    1944~1945,1972~1974,1984~1986,
    2877
    rna:ASIB:1~76 930~931,944~945,1938,2467,2522
    ,2568~2569,2598~2599,2617
    rna:PSIB:1~76 1932~1934,1947~1949,2089,2266~
    2268,2465~2466,2616~2617
    rna:ESIB:1~76 1885,1917~1918,2409~2410,2436~
    2437
    rna:5SB:2~122 910~913,963,965~967,1005,1074
    8646 7azs:5SA
    (3.1Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E212 RF00001 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly1
    rna:TRNA:1~73 1~3,122
    rna:23SA:2~2914 80~83,92,99~103
    8647 7azs:5SB
    (3.1Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E212 RF00001 Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly2
    rna:23SB:2~2914 80~83,90,92,100,102~103
    8648 7azs:ASIA
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly1
    rna:16SA:652~2162 34~37
    rna:MRNA:28~57 34~37
    rna:23SA:2~2914 19,37,55~56,74~76
    8649 7azs:ASIB
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly2
    rna:16SB:652~2161 34~37
    rna:MRNB:28~57 34~37
    rna:23SB:2~2914 17,19,37~38,55~56,64,74~76
    8650 7azs:ESIA
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly1
    rna:16SA:652~2162 34,37~38
    rna:MRNA:28~57 36~37
    rna:23SA:2~2914 3~4,19,56,70~72,76
    8651 7azs:ESIB
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly2
    rna:16SB:652~2161 34,36~38
    rna:MRNB:28~57 36~37
    rna:23SB:2~2914 4,71,76
    8652 7azs:MRNA
    (3.1Å)
    		 30 N/A URS0002335939 N/A Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly1
    rna:16SA:652~2162 33~43,45~53
    rna:ASIA:1~76 49~51
    rna:PSIA:1~76 46~48
    rna:ESIA:1~76 43~44
    8653 7azs:MRNB
    (3.1Å)
    		 30 N/A URS0002335939 N/A Thermus
    thermophilus
    HB8
    300852    		 36827973 Assembly2
    rna:16SB:652~2161 34~43,45~46,48~53
    rna:ASIB:1~76 49~52
    rna:PSIB:1~76 46~48
    rna:ESIB:1~76 43~44
    8654 7azs:PSIA
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly1
    rna:16SA:652~2162 30~32,34,37~38,40~41
    rna:MRNA:28~57 34~37
    rna:23SA:2~2914 11~13,24~25,74~76
    8655 7azs:PSIB
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly2
    rna:16SB:652~2161 30~32,34,37~38,40~41
    rna:MRNB:28~57 34~37
    rna:23SB:2~2914 11~13,24~25,74~76
    8656 7azs:TRNA
    (3.1Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00005AA258 RF00005 Escherichia
    coli
    562    		 36827973 Assembly1
    rna:5SA:1~122 19~20,57
    8657 7azy:E
    (2.877Å)
    		 3161 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119CC RF02540
    RF02543    		 Saccharomyces
    cerevisiae
    S288C
    559292    		 33990576 Assembly1
    rna:F:1~121 996~998,1052,1054~1056,1156,11
    71,1197,1203
    rna:G:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,398,404~
    419,691,1394~1395,1398~1399,14
    18~1420,1441,1530,1558,1584~15
    85,1618,1830~1831,2386,2585,29
    94~2995
    8658 7azy:F
    (2.877Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 33990576 Assembly1
    rna:E:3~3396 79~82,86,90,100,102~103
    8659 7azy:G
    (2.877Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 33990576 Assembly1
    rna:E:3~3396 1~2,4~22,24~33,35~37,40~41,52~
    54,104,109,114~115,126,129,136
    ~157
    8660 7b0y:P
    (3.6Å)
    		 36 N/A URS00021ED8F6 N/A synthetic
    construct
    32630    		 33446560 Assembly1
    rna:a:1~164 113~124
    8661 7b0y:a
    (3.6Å)
    		 164 GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0005685 (C) U1 snRNP    		 URS000032B6B6 RF00003 Homo
    sapiens
    9606    		 33446560
    121

    M319_0.6

    1184

    1202

    518

    s52

    509

    1031

    760    		 Assembly1
    rna:P:110~145 1~11
    8662 7b3b:P
    (3.1Å)
    		 10 N/A URS00021ED945 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 33436624 Assembly1
    rna:T:7~18 6~15
    8663 7b3b:T
    (3.1Å)
    		 12 N/A URS00021ED9CA N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 33436624 Assembly1
    rna:P:6~15 9~18
    8664 7b3c:P
    (3.4Å)
    		 11 N/A URS00021ED941 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 33436624 Assembly1
    rna:T:8~19 5~15
    8665 7b3c:T
    (3.4Å)
    		 12 N/A URS00021ED994 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 33436624 Assembly1
    rna:P:5~15 9~19
    8666 7b3d:P
    (2.8Å)
    		 10 N/A URS00021ED95E N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 33436624 Assembly1
    rna:T:7~18 6~15
    8667 7b3d:T
    (2.8Å)
    		 12 N/A URS00021ED994 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 33436624 Assembly1
    rna:P:6~15 9~18
    8668 7b5k:6
    (2.9Å)
    		 11 N/A N/A N/A Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:a:1~1533 22,24~27,29~32
    rna:x:1~77 25~27
    rna:z:2~77 28~31
    8669 7b5k:9
    (2.9Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000B4C48A RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:A:1~2903 19,56,71,76
    8670 7b5k:A
    (2.9Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A7632D RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:B:1~120 861~863,915,917~918,958
    rna:a:1~1533 1700~1704,1832,1837,1846,1848,
    1912~1913,1915~1916,1919~1920,
    1947~1948,1959~1960
    rna:x:1~77 1907~1909,1923,2251~2253,2439,
    2450~2451,2602
    rna:z:2~77 896~897,1913,2482~2483,2553,26
    02
    rna:9:1~76 1851,2112,2168,2394~2395,2421~
    2422
    8671 7b5k:B
    (2.9Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:A:1~2903 78~80,89,96~97,99~100
    8672 7b5k:a
    (2.9Å)
    		 1533 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119B9 RF00177
    RF01959
    RF01960    		 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:A:1~2903 702,784,899,1407~1409,1418,142
    9,1473~1475,1483~1484,1493~149
    6,1517
    rna:x:1~77 790,966,1229~1230,1338~1340,14
    00
    rna:z:2~77 530,1054,1493
    rna:6:22~32 530,693,926,1196,1397,1400~140
    1,1492~1493,1498
    8673 7b5k:x
    (2.9Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0001A0F008 RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:A:1~2903 11~13,25,75~77
    rna:a:1~1533 31~32,35,39,41~42
    rna:6:22~32 35~38
    8674 7b5k:z
    (2.9Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000231199E RF00005 Escherichia
    coli
    K-12
    83333    		 N/A Assembly1
    rna:A:1~2903 20,38~39,64,77
    rna:a:1~1533 35~38
    rna:6:22~32 35~37
    8675 7b7d:2
    (3.3Å)
    		 1771 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0001A16A6A RF01960
    RF01959
    RF00177    		 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:1:1~7 577,1150,1634,1637,1755~1756,1
    761,1768
    rna:LA:3~3396 628~629,913,971~972,994~995,11
    23,1644~1646,1655~1657,1667,17
    46~1747,1756~1759,1780
    rna:Sn:1~76 1001,1191,1462~1463,1576~1577,
    1637
    rna:Sm:1~76 577,1274,1756
    8676 7b7d:LA
    (3.3Å)
    		 3223 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0001A16A8B RF02540
    RF02543    		 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:2:1~1799 846~847,1935~1936,2125,2195~21
    96,2205,2207,2255~2259,2262~22
    63,2290~2292,2302~2303
    rna:LB:1~121 996~999,1052,1054~1056,1156,11
    71,1197,1203
    rna:LC:1~158 3~23,59,143,330~337,339~342,34
    5~346,349,351,368~369,404~419,
    656~657,691,1394~1395,1397~139
    9,1418~1419,1441,1530,1584,161
    8,1830~1832,2386,2585,2994~299
    5
    rna:Sn:1~76 2266~2267,2619~2621,2819~2820,
    2971
    rna:Sm:1~76 2256,2285~2286,2821,2839,2851,
    2876,2922~2924,2942,2952~2954
    8677 7b7d:LB
    (3.3Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:LA:3~3396 79~82,86,90,100,102~104
    8678 7b7d:LC
    (3.3Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:LA:3~3396 1,3~22,24~37,40~41,53~54,104,1
    09,113~115,126,129,136~155,157
    8679 7b7d:Sm
    (3.3Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00021ED942 RF00005 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:2:1~1799 34~37
    rna:1:1~7 35~37
    rna:LA:3~3396 38,52,63~64,72~76
    8680 7b7d:Sn
    (3.3Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00021ED942 RF00005 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:2:1~1799 30~31,34,38,40~41
    rna:1:1~7 34~37
    rna:LA:3~3396 12,74~76
    8681 7b9v:2
    (2.8Å)
    		 196 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS000023C730 RF00004 Saccharomyces
    cerevisiae
    4932    		 33705709
    9    		 Assembly1
    rna:6:1~102 6~13,16~17,21~23,26~29
    rna:I:1~92 31,33~47
    8682 7b9v:5
    (2.8Å)
    		 178 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000053F313 RF00020 Saccharomyces
    cerevisiae
    4932    		 33705709 Assembly1
    rna:6:1~102 98~100
    rna:E:-14~-1 97~100
    8683 7b9v:6
    (2.8Å)
    		 102 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00006184A9 RF00026 Saccharomyces
    cerevisiae
    4932    		 33705709
    383    		 Assembly1
    rna:2:4~1170 53,55~62,88~89,92~101
    rna:5:1~178 72~73,75~76
    rna:I:1~92 45~51,58~60,79~80
    8684 7b9v:E
    (2.8Å)
    		 14 N/A N/A N/A Saccharomyces
    cerevisiae
    4932    		 33705709 Assembly1
    rna:5:1~178 -5~-1
    8685 7b9v:I
    (2.8Å)
    		 55 N/A N/A N/A Saccharomyces
    cerevisiae
    4932    		 33705709
    132

    387

    168

    403    		 Assembly1
    rna:2:4~1170 2,55~60,62~69,71~73
    rna:6:1~102 1,3~9,70~71
    8686 7bah:C
    (1.89Å)
    		 12 N/A URS000080E329 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:D:1~12 1~12
    8687 7bah:D
    (1.89Å)
    		 12 N/A URS000080E329 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:C:1~12 1~12
    8688 7bai:C
    (3.4Å)
    		 12 N/A URS000080E329 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:D:1~12 1~12
    8689 7bai:D
    (3.4Å)
    		 12 N/A URS000080E329 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:C:1~12 1~12
    8690 7bai:V
    (3.4Å)
    		 12 N/A URS000080E329 N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:V-2:1~12 1~12
    8691 7bgd:A
    (3.2Å)
    		 32 N/A N/A N/A Staphylococcus
    aureus
    subsp.
    aureus
    NCTC
    8325
    93061    		 N/A Assembly1
    rna:a:5~1556 7~9,11~14,16~20,22~31
    8692 7bgd:a
    (3.2Å)
    		 1096 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED94C RF00177
    RF01959
    RF01960    		 Staphylococcus
    aureus
    subsp.
    aureus
    NCTC
    8325
    93061    		 N/A Assembly1
    rna:A:7~38 538,701,731,798,804,936,1408,1
    411,1505~1506,1509~1510,1519,1
    545~1553,1555~1556
    8693 7bhp:L5
    (3.3Å)
    		 3644 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60B81 RF02543
    RF02540    		 Homo
    sapiens
    9606    		 33479117
    M054_0.6

    1306

    769

    706

    1303

    762

    42

    1148

    1149

    764

    870

    167

    21

    1079

    930

    1029

    1072

    1073

    s77

    1071

    819

    1373

    938

    546

    s52

    s51

    s50

    931

    813

    936

    s59

    995

    994

    595

    1314

    991

    1312

    1311

    1150

    673

    123

    124

    125

    1068

    s72

    1060

    s100

    s102

    52

    533

    M227_0.6

    1384

    375

    926

    822

    1128

    988

    1321

    708

    704

    705

    1328

    707

    1124

    987

    1126

    703

    M077_0.6

    1237

    83

    1181

    797

    796

    795

    836

    837

    791

    790

    838

    1334

    s70

    1016

    1017

    1393

    610

    1012

    1013

    1236

    M290_0.6

    763

    1231

    1232

    1233

    1335

    s17

    M109_0.6

    1336

    1331

    1239

    1333

    589

    776

    M273_0.6

    s99

    1389

    902

    821

    900

    901

    906

    905

    33

    s48

    853

    924

    M044_0.6

    1245

    s62

    s96

    1227

    883

    M035_0.6

    1223

    M156_0.6

    604

    M320_0.6

    1347

    60

    s81

    M349_0.6

    1083

    175

    1026

    100

    s61

    977

    976

    974

    852

    970

    M154_0.6

    884

    s55

    979

    M153_0.6

    183

    1238

    185

    1375

    1036

    503

    1034

    1035

    1212

    M102_0.6

    1211

    1216

    1042

    986

    467

    M148_0.6

    1354

    M103_0.6

    169

    91

    1127

    162

    M070_0.6

    M272_0.6

    M020_0.6

    M050_0.6

    1187

    1182

    815

    1037

    727

    M347_0.6

    722

    935

    M086_0.6

    1164

    1165

    1166

    606

    886

    156

    748

    749

    608

    M061_0.6

    958

    1055

    878

    879

    1059

    953

    952

    872

    954

    957

    1107

    1352

    774

    1215

    M104_0.6

    1173

    770

    773

    1183

    1271

    1272

    1273

    779

    778

    1178

    M151_0.6

    78

    1285

    M083_0.6

    1041

    1040

    1043

    1045

    1044

    1288

    354

    688

    1360

    684

    800

    1368    		 Assembly1
    rna:L7:1~120 1736~1737,1741,1794~1796,1909,
    1935~1936,1942
    rna:L8:1~156 2~22,58,339,341~348,350~353,35
    6~357,360,362,379~380,415~419,
    421~430,1305,1333~1334,1371,23
    08~2309,2312~2313,2333,2355,24
    44,2488,2493,2544,2778~2779
    8694 7bhp:L7
    (3.3Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Homo
    sapiens
    9606    		 33479117
    931

    1290

    s51

    879    		 Assembly1
    rna:L5:1~5069 77~80,84,88,100,103
    8695 7bhp:L8
    (3.3Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B2C76 RF00002 Homo
    sapiens
    9606    		 33479117
    1227

    592

    s24

    993

    1215

    1352

    s37

    1238

    1178

    M085_0.6

    1389

    1360

    589

    375

    M106_0.6    		 Assembly1
    rna:L5:1~5069 1,3~13,15~22,24~33,35~37,40,53
    ~54,103,112~113,123,125~127,13
    5~136,138~149,151~156
    8696 7bkp:X
    (2.8Å)
    		 14 N/A URS0000E60BBD N/A Cystovirus
    phi6
    10879    		 34795277 Assembly1
    rna:Z:1~14 1~14
    8697 7bkp:Z
    (2.8Å)
    		 14 N/A URS0000E60BDD N/A Cystovirus
    phi6
    10879    		 34795277 Assembly1
    rna:X:1~14 1~14
    8698 7bkq:X
    (3.4Å)
    		 15 N/A URS0000E60B84 N/A Cystovirus
    phi6
    10879    		 34795277 Assembly1
    rna:Y:1~15 1~15
    8699 7bkq:Y
    (3.4Å)
    		 15 N/A URS0000E60BC3 N/A Cystovirus
    phi6
    10879    		 34795277 Assembly1
    rna:X:1~15 1~15
    8700 7bl2:A
    (3.7Å)
    		 2902 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119D2 RF02540
    RF02541    		 Escherichia
    coli
    K-12
    83333    		 33639093 Assembly1
    rna:B:1~119 861~863,917~918,958~959
    << < 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 > >>
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    Reference:
  • Chengxin Zhang, P. Lydia Freddolino (2023) FURNA: a database for function annotations of RNA structures, bioRxiv 2023.12.19.572314.

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