SEQ2FUN

FURNA
Download all results in tab-seperated text for 16611 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    8701 7b9v:6
    (2.8Å)
    		 102 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00006184A9 RF00026 Saccharomyces
    cerevisiae
    4932    		 33705709
    383    		 Assembly1
    rna:2:4~1170 53,55~62,88~89,92~101
    rna:5:1~178 72~73,75~76
    rna:I:1~92 45~51,58~60,79~80
    8702 7b9v:E
    (2.8Å)
    		 14 N/A N/A N/A Saccharomyces
    cerevisiae
    4932    		 33705709 Assembly1
    rna:5:1~178 -5~-1
    8703 7b9v:I
    (2.8Å)
    		 55 N/A N/A N/A Saccharomyces
    cerevisiae
    4932    		 33705709
    132

    387

    168

    403    		 Assembly1
    rna:2:4~1170 2,55~60,62~69,71~73
    rna:6:1~102 1,3~9,70~71
    8704 7bah:C
    (1.89Å)
    		 12 N/A URS000080E329 N/A synthetic
    construct
    32630    		 37831086 Assembly1
    rna:D:1~12 1~12
    8705 7bah:D
    (1.89Å)
    		 12 N/A URS000080E329 N/A synthetic
    construct
    32630    		 37831086 Assembly1
    rna:C:1~12 1~12
    8706 7bai:C
    (3.4Å)
    		 12 N/A URS000080E329 N/A synthetic
    construct
    32630    		 37831086 Assembly1
    rna:D:1~12 1~12
    8707 7bai:D
    (3.4Å)
    		 12 N/A URS000080E329 N/A synthetic
    construct
    32630    		 37831086 Assembly1
    rna:C:1~12 1~12
    8708 7bai:V
    (3.4Å)
    		 12 N/A URS000080E329 N/A synthetic
    construct
    32630    		 37831086 Assembly2
    rna:V-2:1~12 1~12
    8709 7bgd:A
    (3.2Å)
    		 32 N/A N/A N/A Staphylococcus
    aureus
    subsp.
    aureus
    NCTC
    8325
    93061    		 N/A Assembly1
    rna:a:5~1556 7~9,11~14,16~20,22~31
    8710 7bgd:a
    (3.2Å)
    		 1096 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED94C RF00177 Staphylococcus
    aureus
    subsp.
    aureus
    NCTC
    8325
    93061    		 N/A Assembly1
    rna:A:7~38 538,701,731,798,804,936,1408,1
    411,1505~1506,1509~1510,1519,1
    545~1553,1555~1556
    8711 7bhp:L5
    (3.3Å)
    		 3644 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000E60B81 RF02543 Homo
    sapiens
    9606    		 33479117
    M054_0.6

    1306

    769

    706

    1303

    762

    42

    1148

    1149

    764

    870

    167

    21

    1079

    930

    1029

    1072

    1073

    s77

    1071

    819

    1373

    938

    546

    s52

    s51

    s50

    931

    813

    936

    s59

    995

    994

    595

    1314

    991

    1312

    1311

    1150

    673

    123

    124

    125

    1068

    s72

    1060

    s100

    s102

    52

    533

    M227_0.6

    1384

    375

    926

    822

    1128

    988

    1321

    708

    704

    705

    1328

    707

    1124

    987

    1126

    703

    M077_0.6

    1237

    83

    1181

    797

    796

    795

    836

    837

    791

    790

    838

    1334

    s70

    1016

    1017

    1393

    610

    1012

    1013

    1236

    M290_0.6

    763

    1231

    1232

    1233

    1335

    s17

    M109_0.6

    1336

    1331

    1239

    1333

    589

    776

    M273_0.6

    s99

    1389

    902

    821

    900

    901

    906

    905

    33

    s48

    853

    924

    M044_0.6

    1245

    s62

    s96

    1227

    883

    M035_0.6

    1223

    M156_0.6

    604

    M320_0.6

    1347

    60

    s81

    M349_0.6

    1083

    175

    1026

    100

    s61

    977

    976

    974

    852

    970

    M154_0.6

    884

    s55

    979

    M153_0.6

    183

    1238

    185

    1375

    1036

    503

    1034

    1035

    1212

    M102_0.6

    1211

    1216

    1042

    986

    467

    M148_0.6

    1354

    M103_0.6

    169

    91

    1127

    162

    M070_0.6

    M272_0.6

    M020_0.6

    M050_0.6

    1187

    1182

    815

    1037

    727

    M347_0.6

    722

    935

    M086_0.6

    1164

    1165

    1166

    606

    886

    156

    748

    749

    608

    M061_0.6

    958

    1055

    878

    879

    1059

    953

    952

    872

    954

    957

    1107

    1352

    774

    1215

    M104_0.6

    1173

    770

    773

    1183

    1271

    1272

    1273

    779

    778

    1178

    M151_0.6

    78

    1285

    M083_0.6

    1041

    1040

    1043

    1045

    1044

    1288

    354

    688

    1360

    684

    800

    1368    		 Assembly1
    rna:L7:1~120 1736~1737,1741,1794~1796,1909,
    1935~1936,1942
    rna:L8:1~156 2~22,58,339,341~348,350~353,35
    6~357,360,362,379~380,415~419,
    421~430,1305,1333~1334,1371,23
    08~2309,2312~2313,2333,2355,24
    44,2488,2493,2544,2778~2779
    8712 7bhp:L7
    (3.3Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Homo
    sapiens
    9606    		 33479117
    931

    1290

    s51

    879    		 Assembly1
    rna:L5:1~5069 77~80,84,88,100,103
    8713 7bhp:L8
    (3.3Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B2C76 RF00002 Homo
    sapiens
    9606    		 33479117
    1227

    592

    s24

    993

    1215

    1352

    s37

    1238

    1178

    M085_0.6

    1389

    1360

    589

    375

    M106_0.6    		 Assembly1
    rna:L5:1~5069 1,3~13,15~22,24~33,35~37,40,53
    ~54,103,112~113,123,125~127,13
    5~136,138~149,151~156
    8714 7bkp:X
    (2.8Å)
    		 14 N/A URS0000E60BBD N/A Cystovirus
    phi6
    10879    		 34795277 Assembly1
    rna:Z:1~14 1~14
    8715 7bkp:Z
    (2.8Å)
    		 14 N/A URS0000E60BDD N/A Cystovirus
    phi6
    10879    		 34795277 Assembly1
    rna:X:1~14 1~14
    8716 7bkq:X
    (3.4Å)
    		 15 N/A URS0000E60B84 N/A Cystovirus
    phi6
    10879    		 34795277 Assembly1
    rna:Y:1~15 1~15
    8717 7bkq:Y
    (3.4Å)
    		 15 N/A URS0000E60BC3 N/A Cystovirus
    phi6
    10879    		 34795277 Assembly1
    rna:X:1~15 1~15
    8718 7bl2:A
    (3.7Å)
    		 2902 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119D2 RF02541 Escherichia
    coli
    K-12
    83333    		 33639093 Assembly1
    rna:B:1~119 861~863,917~918,958~959
    8719 7bl2:B
    (3.7Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    K-12
    83333    		 33639093 Assembly1
    rna:A:-6~2912 78~80,89~90,97,99~100
    8720 7bl3:A
    (3.5Å)
    		 2902 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119D2 RF02541 Escherichia
    coli
    K-12
    83333    		 33639093 Assembly1
    rna:B:1~119 861~863,915,917~918,958~959
    8721 7bl3:B
    (3.5Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E133 RF00001 Escherichia
    coli
    K-12
    83333    		 33639093 Assembly1
    rna:A:-6~2912 78~80,89~90,97,99~100
    8722 7bl4:A
    (2.4Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    K-12
    83333    		 33639093 Assembly1
    rna:B:1~119 861~863,915,917~918,958
    8723 7bl4:B
    (2.4Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E133 RF00001 Escherichia
    coli
    K-12
    83333    		 33639093 Assembly1
    rna:A:1~2903 78~81,89,97,99~100
    8724 7bl5:A
    (3.3Å)
    		 2913 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119D2 RF02541 Escherichia
    coli
    str.
    K-12
    substr.
    MG1655
    511145    		 33639093 Assembly1
    rna:B:1~119 861~863,915,917~918,958~959
    8725 7bl5:B
    (3.3Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    str.
    K-12
    substr.
    MG1655
    511145    		 33639093 Assembly1
    rna:A:-6~2912 78~80,89~90,97,99~100
    8726 7bl6:A
    (4.0Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    K-12
    83333    		 33639093 Assembly1
    rna:B:1~119 861~863,915,917~919,958
    8727 7bl6:B
    (4.0Å)
    		 119 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E133 RF00001 Escherichia
    coli
    K-12
    83333    		 33639093 Assembly1
    rna:A:1~2903 78~81,89,97,99~100
    8728 7bt6:1
    (3.12Å)
    		 2962 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 33037216 Assembly1
    rna:2:1~158 1,5~8,11~13,15~23,59,330~337,3
    39~342,345~346,349,351,368~369
    ,404~419,691,1394~1395,1399,14
    19,1441,2386,2994~2995
    8729 7bt6:2
    (3.12Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 33037216 Assembly1
    rna:1:1~3396 1,4~22,24~33,35~37,40,53,104,1
    38~144,146~150,152~155,157
    8730 7bt6:3
    (3.12Å)
    		 121 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000055688D RF00001 Saccharomyces
    cerevisiae
    S288C
    559292    		 33037216 Assembly1
    rna:1:1~3396 82~83,99
    8731 7btb:1
    (3.22Å)
    		 3058 GO:0003735 (F) structural constituent ...
    GO:0006413 (P) translational initiation
    GO:0006414 (P) translational elongation
    GO:0006450 (P) regulation of translati...
    GO:0006457 (P) protein folding
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS000061F377 RF02543 Saccharomyces
    cerevisiae
    S288C
    559292    		 33037216 Assembly1
    rna:2:1~158 1,3~23,59,143,330~337,339~342,
    345~346,349,351,368~369,404~40
    9,411~419,656,691,1394,1399,14
    19~1420,1441,1558,1620,1830~18
    32,2386,2994~2995
    rna:6:1~232 1,3,1570
    8732 7btb:2
    (3.22Å)
    		 158 GO:0003735 (F) structural constituent ...
    GO:0002181 (P) cytoplasmic translation
    GO:0005840 (C) ribosome
    GO:0022625 (C) cytosolic large ribosom...    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    S288C
    559292    		 33037216 Assembly1
    rna:1:1~3396 1,3~13,15~22,24~33,35~37,40~41
    ,53~54,104,113~115,128,137~150
    ,152~157
    8733 7btb:6
    (3.22Å)
    		 65 N/A URS000013305B N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 33037216 Assembly1
    rna:1:1~3396 229,232
    8734 7bv2:P
    (2.5Å)
    		 11 N/A URS0001A16A67 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 32358203 Assembly1
    rna:T:8~21 10~20
    8735 7bv2:T
    (2.5Å)
    		 14 N/A URS0001A16A6F N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 32358203 Assembly1
    rna:P:10~20 11~21
    8736 7bv8:A
    (3.14Å)
    		 2897 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000B21DE5 RF02541 Escherichia
    coli
    K-12
    83333    		 32571953 Assembly1
    rna:B:1~120 861~864,915,917~918
    8737 7bv8:B
    (3.14Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    K-12
    83333    		 32571953 Assembly1
    rna:A:1~2903 41,78~80,97,99~100
    8738 7bzf:F
    (3.26Å)
    		 10 N/A URS0001A24B66 N/A Foot-and-mouth
    disease
    virus
    12110    		 32526208 Assembly1
    rna:G:-4~4 -4~4
    8739 7c2k:F
    (2.93Å)
    		 20 N/A URS0001A24B73 N/A Foot-and-mouth
    disease
    virus
    12110    		 32526208 Assembly1
    rna:G:-6~5 -5~6
    8740 7c2k:G
    (2.93Å)
    		 12 N/A URS0001A24B74 N/A Foot-and-mouth
    disease
    virus
    12110    		 32526208 Assembly1
    rna:F:-21~6 -6~5
    8741 7c7a:A
    (2.8Å)
    		 330 EC:3.1.-.-
    GO:0000171 (F) ribonuclease MRP activity
    GO:0006364 (P) rRNA processing
    GO:0000172 (C) ribonuclease MRP complex    		 URS0001A24B54 RF00030 Saccharomyces
    cerevisiae
    S288C
    559292    		 32586950 Assembly1
    rna:R:-1~7 87~88,266,305~306
    8742 7cpj:9
    (3.3Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001DEEBE RF00005 Escherichia
    coli
    562    		 34906996 Assembly1
    rna:a:2~1540 30~32,34,38,40~42
    rna:A:1~2903 12,24,74~76
    rna:x:16~18 34~37
    8743 7cpj:A
    (3.3Å)
    		 2900 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000A76322 RF02541 Escherichia
    coli
    562    		 34906996 Assembly1
    rna:a:2~1540 1689,1701~1704,1832,1836~1837,
    1846,1848,1912~1913,1916,1919~
    1920,1947~1949,1959~1961
    rna:B:1~120 861~864,915,917~919,958,2340
    rna:9:1~76 1907~1908,1923,2063~2064,2251~
    2253,2450~2451,2602
    8744 7cpj:B
    (3.3Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00008116C5 RF00001 Escherichia
    coli
    562    		 34906996 Assembly1
    rna:A:1~2903 41,78~81,89,96~97,99~100
    8745 7cpj:a
    (3.3Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177 Escherichia
    coli
    562    		 34906996 Assembly1
    rna:A:1~2903 702,784,900,1407~1409,1418,142
    9,1473~1475,1483~1484,1493~149
    6,1517
    rna:9:1~76 790,966,1229,1338~1340,1400
    rna:x:16~18 926,1400~1402,1498
    8746 7cpu:L5
    (2.82Å)
    		 3539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119F6 RF02543 Mus
    musculus
    10090    		 36517592
    1320

    1325

    153

    M188_0.6

    113

    350

    1379

    513    		 Assembly1
    rna:L7:1~120 1539~1542,1544,1595~1599,1697,
    1712,1739,1745
    rna:L8:1~156 2~22,58,146~147,338,341~347,34
    9~352,355~356,359,361,378~379,
    414~429,1119~1120,1148~1149,11
    86,2065~2066,2069~2070,2089~20
    91,2112,2201,2229,2265~2266,23
    00~2302,2532~2534,3547
    rna:S2:1~1870 1377~1379,3286,3367,3416~3420,
    3423~3424,3451~3453,3463~3465
    rna:S6:2~76 3371~3372,3396~3397,3994~3995,
    4023~4024
    8747 7cpu:L7
    (2.82Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Mus
    musculus
    10090    		 36517592 Assembly1
    rna:L5:1~4717 77~80,84,88,98,100~103
    8748 7cpu:L8
    (2.82Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119A4 RF00002 Mus
    musculus
    10090    		 36517592 Assembly1
    rna:L5:1~4717 3~22,24~37,40~41,53~54,103,108
    ,110~113,115,123~127,136,138~1
    49,151~156
    8749 7cpu:S2
    (2.82Å)
    		 1656 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119C0 RF01960 Mus
    musculus
    10090    		 36517592
    576    		 Assembly1
    rna:L5:1~4717 678,971,1029~1031,1709~1711,17
    20~1722,1816~1817,1827~1829,18
    50
    rna:S6:2~76 1059,1249,1525~1526,1640~1642,
    1702
    8750 7cpu:S6
    (2.82Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000326EAC RF00005 Mus
    musculus
    10090    		 36517592
    576    		 Assembly1
    rna:L5:1~4717 71,75~76
    rna:S2:1~1870 29~32,34,38~42
    8751 7cpv:L5
    (3.03Å)
    		 3541 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119F6 RF02543 Mus
    musculus
    10090    		 36517592
    1320

    1325

    153

    M188_0.6

    113

    350

    1379

    513    		 Assembly1
    rna:L7:1~120 1539~1541,1544,1595,1597~1598,
    1697,1712,1739,1745
    rna:L8:1~156 2~22,58,146~147,338,340~347,34
    9~352,355~356,359,361,378~379,
    414~429,1119~1120,1148~1149,11
    86,2065~2066,2069~2070,2089~20
    90,2112,2201,2249,2300~2301,25
    32~2534
    rna:S2:1~1870 1377~1379,3286,3367,3416~3420,
    3423~3424,3451~3452,3463~3465
    rna:S6:2~76 3371~3372,3396~3397,3994~3995,
    4023~4024
    8752 7cpv:L7
    (3.03Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000002B0D5 RF00001 Mus
    musculus
    10090    		 36517592 Assembly1
    rna:L5:1~4717 77~79,84,88,98,100~101,103
    8753 7cpv:L8
    (3.03Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119A4 RF00002 Mus
    musculus
    10090    		 36517592 Assembly1
    rna:L5:1~4717 4~22,24~37,40~41,53~54,103,108
    ,110~113,115,123~127,135~136,1
    38~149,151~156
    8754 7cpv:S2
    (3.03Å)
    		 1637 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119C0 RF01960 Mus
    musculus
    10090    		 36517592
    576    		 Assembly1
    rna:L5:1~4717 678,971,1029~1031,1709~1711,17
    20,1722,1816~1817,1826~1829,18
    50
    rna:S6:2~76 1059,1249,1525~1526,1640~1642,
    1702
    8755 7cpv:S6
    (3.03Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000326EAC RF00005 Mus
    musculus
    10090    		 36517592
    576    		 Assembly1
    rna:L5:1~4717 70~72,75~76
    rna:S2:1~1870 30~32,34,38~42
    8756 7ctt:Q
    (3.2Å)
    		 16 N/A URS00021ED9A2 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 33521757 Assembly1
    rna:T:9~26 5~20
    8757 7ctt:T
    (3.2Å)
    		 18 N/A URS00021ED98B N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 33521757 Assembly1
    rna:Q:5~20 11~26
    8758 7cxm:I
    (2.9Å)
    		 25 N/A URS00021ED98C N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 33208736 Assembly1
    rna:J:100~125 12~22,24~35
    8759 7cxm:J
    (2.9Å)
    		 26 N/A URS00021ED8F4 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 33208736 Assembly1
    rna:I:11~35 102~112,114,116~125
    8760 7cxn:I
    (3.84Å)
    		 25 N/A URS00021ED98C N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 33208736 Assembly1
    rna:J:100~125 11~35
    8761 7cxn:J
    (3.84Å)
    		 26 N/A URS00021ED8F4 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 33208736 Assembly1
    rna:I:11~35 102~125
    8762 7cyq:I
    (2.83Å)
    		 25 N/A URS00021ED9A9 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 33232691 Assembly1
    rna:J:24~50 10~20,22~33
    8763 7cyq:J
    (2.83Å)
    		 27 N/A URS00021ED92C N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 33232691 Assembly1
    rna:I:9~33 27~50
    8764 7d1a:A
    (3.8Å)
    		 692 GO:0000373 (P) Group II intron splicing URS00021ED979 RF00029 Lactococcus
    cremoris
    1359    		 33021674 Assembly1
    rna:B:1~12 107,122,220~222,224~227,279~28
    0,282~284,2419
    8765 7d1a:B
    (3.8Å)
    		 12 N/A URS00021ED95B N/A Lactococcus
    cremoris
    1359    		 33021674 Assembly1
    rna:A:1~2492 1~4,8~12
    8766 7d4i:3A
    (4.0Å)
    		 216 GO:0006396 (P) RNA processing
    GO:0005730 (C) nucleolus    		 URS000231196A RF01846 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:5A:2~591 39~53,71~73
    rna:SA:-7~1804 2~14,16~22,25,27~28
    8767 7d4i:5A
    (4.0Å)
    		 118 GO:0034463 (P) 90S preribosome assembly URS000007769E N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:3A:2~333 281~282,464~468,470~479
    8768 7d4i:SA
    (4.0Å)
    		 1337 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119EF RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:3A:2~333 5,7,9~16,18,1112~1117,1119~112
    5
    8769 7d5s:3A
    (4.6Å)
    		 175 GO:0006396 (P) RNA processing
    GO:0005730 (C) nucleolus    		 URS0000B21E09 RF01846 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:5A:2~591 39~55,62~73
    rna:SA:-7~1791 1~13,15~22,25~28
    8770 7d5s:5A
    (4.6Å)
    		 523 GO:0034463 (P) 90S preribosome assembly URS000007769E N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:3A:1~333 281~292,462~468,470~479
    8771 7d5s:SA
    (4.6Å)
    		 859 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00021ED968 RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:3A:1~333 5,7~17,1111~1117,1119~1125
    8772 7d5t:3A
    (6.0Å)
    		 167 GO:0006396 (P) RNA processing
    GO:0005730 (C) nucleolus    		 URS0000B21E09 RF01846 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:5A:464~545 39~53
    rna:SA:-7~1804 2~14,16~22,25,27~28
    8773 7d5t:5A
    (6.0Å)
    		 43 GO:0034463 (P) 90S preribosome assembly URS000007769E N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:3A:2~333 464~468,470~479
    8774 7d5t:SA
    (6.0Å)
    		 1189 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00023119EF RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:3A:2~333 5,7,9~16,18,1112~1117,1119~112
    5
    8775 7d63:3A
    (12.3Å)
    		 175 GO:0006396 (P) RNA processing
    GO:0005730 (C) nucleolus    		 URS0000B21E09 RF01846 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:5A:2~591 39~53,62~73
    rna:SA:-7~1804 1~13,15~22,25~28
    8776 7d63:5A
    (12.3Å)
    		 192 GO:0034463 (P) 90S preribosome assembly URS000007769E N/A Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:3A:1~333 281~292,464~468,470~479
    8777 7d63:SA
    (12.3Å)
    		 1331 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0002311A0A RF01960 Saccharomyces
    cerevisiae
    S288C
    559292    		 N/A Assembly1
    rna:3A:1~333 5,7~17,1111~1117,1119~1125
    8778 7d6z:2
    (3.4Å)
    		 65 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00021ED932 RF00005 Escherichia
    coli
    562    		 33761323 Assembly1
    rna:A:1~2903 19,56~57,70~72
    8779 7d6z:3
    (3.4Å)
    		 70 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000009EE82 RF00005 Escherichia
    coli
    562    		 33761323 Assembly1
    rna:A:1~2903 12~13,24,74~76
    rna:f:2~1540 30~32,38,40~41
    8780 7d6z:4
    (3.4Å)
    		 66 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000021B2C1 RF00005 Escherichia
    coli
    562    		 33761323 Assembly1
    rna:A:1~2903 19,56,64,74,76
    8781 7d6z:A
    (3.4Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02541 Escherichia
    coli
    562    		 33761323 Assembly1
    rna:2:1~73 1850~1851,1891,1893,2112~2113
    rna:3:1~76 1907~1908,1923,2251~2253,2450~
    2451,2602
    rna:4:1~76 896,2451,2482,2507,2553~2555,2
    583~2585,2602
    rna:B:2~119 861~864,915,917~919,958,2340
    rna:f:2~1540 1701,1703,1832,1836~1837,1846,
    1848,1912,1915~1916,1919~1920,
    1947~1949,1959~1961
    8782 7d6z:B
    (3.4Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000366A67 RF00001 Escherichia
    coli
    562    		 33761323 Assembly1
    rna:A:1~2903 41,78~81,89,96~97,99~100
    8783 7d6z:f
    (3.4Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177 Escherichia
    coli
    562    		 33761323 Assembly1
    rna:3:1~76 790,1229,1338~1340
    rna:A:1~2903 702,784,899,1407~1409,1418~141
    9,1429,1474,1483~1484,1494~149
    6,1517
    8784 7d80:A
    (4.1Å)
    		 2903 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E25C RF02541 Escherichia
    coli
    562    		 33761323 Assembly1
    rna:B:2~1540 1701,1703,1836~1837,1846~1848,
    1912~1913,1915,1919~1920,1947~
    1948,1959~1960
    rna:X:1~73 1851~1852,2112~2113
    rna:Z:1~76 1913~1915,1942,1944,1955,2470~
    2471,2482~2483,2506~2508,2553~
    2555,2573,2582~2583
    rna:a:2~119 861~864,915,917~919,958
    rna:y:1~76 1908~1909,1922~1923,2251~2253,
    2255,2450~2451,2602
    8785 7d80:B
    (4.1Å)
    		 1539 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DDC0 RF00177 Escherichia
    coli
    562    		 33761323 Assembly1
    rna:A:1~2903 702,783~784,1407,1409,1418,142
    9,1474,1483~1484,1493~1496,151
    7
    rna:Z:1~76 518,530~531,1054,1493
    rna:y:1~76 790,1229,1338~1340,1400
    8786 7d80:X
    (4.1Å)
    		 65 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00021ED932 RF00005 Escherichia
    coli
    562    		 33761323 Assembly1
    rna:A:1~2903 19,56,71
    8787 7d80:Z
    (4.1Å)
    		 66 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000021B2C1 RF00005 Escherichia
    coli
    562    		 33761323 Assembly1
    rna:A:1~2903 25~26,38,51~52,63,71,73~76
    rna:B:2~1540 33,35~36,38
    8788 7d80:a
    (4.1Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000366A67 RF00001 Escherichia
    coli
    562    		 33761323 Assembly1
    rna:A:1~2903 78~81,89~90,97,99~100
    8789 7d80:y
    (4.1Å)
    		 70 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000009EE82 RF00005 Escherichia
    coli
    562    		 33761323 Assembly1
    rna:A:1~2903 2,12,74~76
    rna:B:2~1540 30~31,35,38~41
    8790 7d8c:B
    (3.6Å)
    		 38 N/A URS00023119B5 N/A Lachnospiraceae
    bacterium
    ND2006
    1410628    		 34108490 Assembly1
    rna:C:1~3 25~28
    8791 7dco:B
    (2.5Å)
    		 179 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000053F313 RF00020 Saccharomyces
    cerevisiae
    4932    		 33243853 Assembly1
    rna:F:1~103 98~99
    rna:G:74~536 96~100
    8792 7dco:F
    (2.5Å)
    		 103 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00006184A9 RF00026 Saccharomyces
    cerevisiae
    4932    		 33243853
    383    		 Assembly1
    rna:B:1~183 72~73,75
    rna:G:74~536 45~51,77,79
    rna:H:1~1169 53,55~62,85,88,92~103
    8793 7dco:G
    (2.5Å)
    		 105 N/A N/A N/A Saccharomyces
    cerevisiae
    4932    		 33243853
    562

    132

    355

    168

    387

    487

    403    		 Assembly1
    rna:B:1~183 95,97~99
    rna:F:1~103 98~99,102~107
    rna:H:1~1169 488,490~500,502~504
    8794 7dco:H
    (2.5Å)
    		 169 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS0000D77944 RF00004 Saccharomyces
    cerevisiae
    4932    		 33243853 Assembly1
    rna:F:1~103 2~14,17,20~23,26~30
    rna:G:74~536 32~46
    8795 7dfg:P
    (2.7Å)
    		 12 N/A URS00023119C8 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 N/A Assembly1
    rna:T:7~22 9~20
    8796 7dfg:T
    (2.7Å)
    		 16 N/A URS0002311A02 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 N/A Assembly1
    rna:P:9~20 11~22
    8797 7dfh:T
    (2.97Å)
    		 12 N/A URS0002311980 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 N/A Assembly1
    rna:P:13~20 11~18
    8798 7dmq:B
    (3.06Å)
    		 53 N/A URS00021ED93F N/A Leptotrichia
    shahii
    157691    		 33472057 Assembly1
    rna:C:3~37 23~35,37~41,43~54,56~57
    8799 7dmq:C
    (3.06Å)
    		 35 N/A URS00021ED911 N/A Escherichia
    coli
    562    		 33472057 Assembly1
    rna:B:5~57 3~4,7~37
    8800 7doi:P
    (2.6Å)
    		 12 N/A URS00023119C8 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 N/A Assembly1
    rna:T:8~22 9~20
    << < 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.