SEQ2FUN

FURNA
Download all results in tab-seperated text for 16611 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    8801 7doi:T
    (2.6Å)
    		 15 N/A URS00023119C7 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 N/A Assembly1
    rna:P:9~20 11~22
    8802 7dok:P
    (2.73Å)
    		 20 N/A URS0001A16A67 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 N/A Assembly1
    rna:T:7~30 1~20
    8803 7dok:T
    (2.73Å)
    		 24 N/A URS0002311990 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 N/A Assembly1
    rna:P:1~20 11~30
    8804 7dte:F
    (3.0Å)
    		 33 N/A URS00023119EE N/A Foot-and-mouth
    disease
    virus
    12110    		 34653416 Assembly1
    rna:G:-24~4 -4~24
    8805 7dte:G
    (3.0Å)
    		 29 N/A URS000231197E N/A Foot-and-mouth
    disease
    virus
    12110    		 34653416 Assembly1
    rna:F:-8~24 -24~-20,-18~4
    8806 7dug:A
    (3.75Å)
    		 1512 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DD5E RF00177 Thermus
    thermophilus
    HB8
    300852    		 N/A Assembly1
    rna:Y:1~6 530,1196,1397,1492~1493,1544
    rna:W:28~42 530~531,1054,1493
    8807 7dug:W
    (3.75Å)
    		 15 N/A URS000080E1F5 N/A Thermus
    thermophilus
    274    		 N/A Assembly1
    rna:A:5~1544 34~37
    rna:Y:1~6 34~37
    8808 7duh:A
    (3.75Å)
    		 1512 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DD5E RF00177 Thermus
    thermophilus
    HB8
    300852    		 N/A Assembly1
    rna:Y:1~6 530,1196,1397,1492~1493,1544
    rna:W:28~42 530~531,1054,1493
    8809 7duh:W
    (3.75Å)
    		 15 N/A URS000080E1F5 N/A Thermus
    thermophilus
    274    		 N/A Assembly1
    rna:A:5~1544 34~37
    rna:Y:1~6 34~37
    8810 7dui:A
    (3.62Å)
    		 1512 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DD5E RF00177 Thermus
    thermophilus
    HB8
    300852    		 N/A Assembly1
    rna:Y:1~6 530,1196,1397,1492~1493,1544
    rna:W:28~42 530~531,1054,1493
    8811 7dui:W
    (3.62Å)
    		 15 N/A URS000080E1F5 N/A Thermus
    thermophilus
    274    		 N/A Assembly1
    rna:A:5~1544 34~37
    rna:Y:1~6 34~37
    8812 7duj:A
    (3.75Å)
    		 1512 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DD5E RF00177 Thermus
    thermophilus
    HB8
    300852    		 N/A Assembly1
    rna:Y:1~6 530,1196,1397,1492~1493,1544
    rna:W:28~42 530~531,1054,1493
    8813 7duj:W
    (3.75Å)
    		 15 N/A URS000080E1F5 N/A Thermus
    thermophilus
    274    		 N/A Assembly1
    rna:A:5~1544 34~37
    rna:Y:1~6 34~37
    8814 7duk:A
    (3.6Å)
    		 1512 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DD5E RF00177 Thermus
    thermophilus
    HB8
    300852    		 N/A Assembly1
    rna:Y:1~6 530,1196,1397,1492~1493,1544
    rna:W:28~42 530~531,1054,1493
    8815 7duk:W
    (3.6Å)
    		 15 N/A URS000080E1F5 N/A Thermus
    thermophilus
    274    		 N/A Assembly1
    rna:A:5~1544 34~37
    rna:Y:1~6 34~37
    8816 7dul:A
    (3.62Å)
    		 1512 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DD5E RF00177 Thermus
    thermophilus
    HB8
    300852    		 N/A Assembly1
    rna:Y:1~6 530,1196,1397,1492~1493,1544
    rna:W:28~42 530~531,1054,1493
    8817 7dul:W
    (3.62Å)
    		 15 N/A URS000080E1F5 N/A Thermus
    thermophilus
    274    		 N/A Assembly1
    rna:A:5~1544 34~37
    rna:Y:1~6 34~37
    8818 7dvq:B
    (2.89Å)
    		 90 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000075BAAE RF00020 Homo
    sapiens
    9606    		 33509932
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390    		 Assembly1
    rna:F:2~65 42~44
    rna:G:-11~222 40~43
    8819 7dvq:F
    (2.89Å)
    		 60 GO:0030622 (F) U4atac snRNA binding
    GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0005691 (C) U6atac snRNP    		 URS00021ED9B2 RF00619 Homo
    sapiens
    9606    		 33509932
    1353

    1075

    M352_0.6

    s46

    1395

    M070_0.6    		 Assembly1
    rna:B:8~116 38~39,41~42
    rna:G:-11~222 6~8,10~18,43,45
    rna:H:1~84 22~29,51
    8820 7dvq:G
    (2.89Å)
    		 63 N/A N/A N/A Homo
    sapiens
    9606    		 33509932
    605

    1129

    596

    609

    332

    175

    M149_0.6

    726

    775

    1074

    798

    1039

    1018

    M012_0.6

    1015

    1094

    1096

    1159

    1158

    772

    465

    611

    1098

    1135

    s95

    725

    683

    765

    1069

    1286

    1061

    1063

    1065

    s101

    M232_0.6

    1106

    1243

    1242

    M227_0.6

    720

    721

    686

    1108    		 Assembly1
    rna:B:8~116 -3~0
    rna:F:2~65 3~15
    rna:H:1~84 191~202,204~206
    8821 7dvq:H
    (2.89Å)
    		 63 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005693 (C) U12 snRNP    		 URS00006ECA78 RF00007 Homo
    sapiens
    9606    		 33509932 Assembly1
    rna:F:2~65 2~5,8~9,11~13
    rna:G:-11~222 16~29
    8822 7eag:A
    (2.5Å)
    		 11 N/A URS000231196D N/A Clostridium
    perfringens
    SM101
    289380    		 33978763 Assembly1
    rna:C:1~19 8~9
    rna:B:12~19 1~5,7~11
    8823 7eag:C
    (2.5Å)
    		 19 N/A URS000231196D N/A Clostridium
    perfringens
    SM101
    289380    		 33978763 Assembly1
    rna:D:1~19 1~5,7~19
    8824 7eag:D
    (2.5Å)
    		 19 N/A URS000231196D N/A Clostridium
    perfringens
    SM101
    289380    		 33978763 Assembly1
    rna:C:1~19 1~5,7~19
    8825 7eag:E
    (2.5Å)
    		 19 N/A URS000231196D N/A Clostridium
    perfringens
    SM101
    289380    		 33978763 Assembly1
    rna:D:1~19 8~9
    rna:F:1~19 1~5,7~19
    8826 7eag:F
    (2.5Å)
    		 19 N/A URS000231196D N/A Clostridium
    perfringens
    SM101
    289380    		 33978763 Assembly1
    rna:D:1~19 14~15
    rna:E:1~19 1~5,7~19
    8827 7ecj:A
    (3.1Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:1~12 1~12
    8828 7ecj:B
    (3.1Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:1~12 1~12
    8829 7ecj:C
    (3.1Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:C-2:1~12 1~12
    8830 7eck:A
    (2.79Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:1~12 1~12
    8831 7eck:B
    (2.79Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:1~12 1~3,5~12
    8832 7eck:C
    (2.79Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:D:1~12 1~2,5~12
    8833 7eck:D
    (2.79Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:C:1~12 1~3,5~9,11~12
    8834 7eck:E
    (2.79Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly3
    rna:F:1~12 1~12
    8835 7eck:F
    (2.79Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly3
    rna:E:1~12 1~3,5~12
    8836 7eck:G
    (2.79Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly4
    rna:H:1~12 1~12
    8837 7eck:H
    (2.79Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly4
    rna:G:1~12 1~3,5~9,11~12
    8838 7eck:I
    (2.79Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly5
    rna:J:1~12 1~8,10~12
    8839 7eck:J
    (2.79Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly5
    rna:I:1~12 1~3,6~12
    8840 7eck:K
    (2.79Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly6
    rna:L:1~12 1~3,5~12
    8841 7eck:L
    (2.79Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly6
    rna:K:1~12 1~3,5~9,11~12
    8842 7ecl:A
    (3.01Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:1~12 1~3,5~8,11~12
    8843 7ecl:B
    (3.01Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:1~12 1~3,6~12
    8844 7ecl:C
    (3.01Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:D:1~12 1~2,5~7,9~12
    8845 7ecl:D
    (3.01Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:C:1~12 1~3,5~7,9,11~12
    8846 7ecl:E
    (3.01Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly3
    rna:F:1~12 1~3,5~8,10~12
    8847 7ecl:F
    (3.01Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly3
    rna:E:1~12 1~3,6~8,10~12
    8848 7ecl:G
    (3.01Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly4
    rna:H:1~12 1~3,5~12
    8849 7ecl:H
    (3.01Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly4
    rna:G:1~12 1~3,5~9,11~12
    8850 7ecl:I
    (3.01Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly5
    rna:J:1~12 1~3,5~12
    8851 7ecl:J
    (3.01Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly5
    rna:I:1~12 1~3,5~8,11~12
    8852 7ecl:K
    (3.01Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly6
    rna:L:1~12 1~3,5~12
    8853 7ecl:L
    (3.01Å)
    		 12 N/A URS00023358B6 N/A synthetic
    construct
    32630    		 N/A Assembly6
    rna:K:1~12 1~3,5~9,11~12
    8854 7ecm:A
    (1.51Å)
    		 12 N/A URS00023358FB N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:1~12 1~12
    8855 7ecm:B
    (1.51Å)
    		 12 N/A URS00023358FB N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:1~12 1~12
    8856 7ecm:C
    (1.51Å)
    		 12 N/A URS00023358FB N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:D:1~12 1~12
    8857 7ecm:D
    (1.51Å)
    		 12 N/A URS00023358FB N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:C:1~12 1~12
    8858 7ecn:A
    (1.6Å)
    		 12 N/A URS00023358FB N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:1~12 1~3,5~12
    8859 7ecn:B
    (1.6Å)
    		 12 N/A URS00023358FB N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:1~12 1~3,5~8,10~12
    8860 7ecn:C
    (1.6Å)
    		 12 N/A URS00023358FB N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:D:1~12 1~3,5~12
    8861 7ecn:D
    (1.6Å)
    		 12 N/A URS00023358FB N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:C:1~12 1~3,5~12
    8862 7eco:A
    (1.81Å)
    		 12 N/A URS00023358BA N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:B:1~12 1~3,5~8,10~12
    8863 7eco:B
    (1.81Å)
    		 12 N/A URS00023358BA N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:A:1~12 1~3,5~8,10~12
    8864 7eco:C
    (1.81Å)
    		 12 N/A URS00023358BA N/A synthetic
    construct
    32630    		 N/A Assembly3
    rna:D:1 1~3,5~12
    8865 7eco:D
    (1.81Å)
    		 12 N/A URS00023358BA N/A synthetic
    construct
    32630    		 N/A Assembly3
    rna:C:1~12 1~8,10~12
    8866 7eco:E
    (1.81Å)
    		 12 N/A URS00023358BA N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:F:1~12 1~8,10~12
    8867 7eco:F
    (1.81Å)
    		 12 N/A URS00023358BA N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:E:1~12 1~3,5~12
    8868 7ecp:A
    (2.91Å)
    		 12 N/A URS00023358F4 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:1~12 1~12
    8869 7ecp:B
    (2.91Å)
    		 12 N/A URS00023358F4 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:1~12 1~8,10~12
    8870 7ecp:C
    (2.91Å)
    		 12 N/A URS00023358F4 N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:D:1~12 1~8,10~12
    8871 7ecp:D
    (2.91Å)
    		 12 N/A URS00023358F4 N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:C:1~12 1~3,5~12
    8872 7ed5:I
    (2.98Å)
    		 20 N/A URS0001A16A67 N/A synthetic
    construct
    32630    		 35110538 Assembly1
    rna:J:24~47 13~32
    8873 7ed5:J
    (2.98Å)
    		 24 N/A URS00023358E0 N/A synthetic
    construct
    32630    		 35110538 Assembly1
    rna:I:13~32 28~47
    8874 7edl:A
    (2.6Å)
    		 22 N/A URS000080DDE4 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:26~46 3~16,19~23
    8875 7edl:B
    (2.6Å)
    		 21 N/A URS000080DDE4 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:2~23 26~39,42~46
    8876 7edm:A
    (2.81Å)
    		 22 N/A URS000080E022 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:26~46 3~5,7~16,19,21~23
    8877 7edm:B
    (2.81Å)
    		 21 N/A URS000080E022 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:2~23 26~39,42,44~46
    8878 7edn:A
    (2.6Å)
    		 22 N/A URS000080E022 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A-2:2~23 3~5,7~17,19,21~23
    8879 7edt:A
    (1.2Å)
    		 12 N/A URS0002335907 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:13~24 1~12
    8880 7edt:B
    (1.2Å)
    		 12 N/A URS0002335907 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:1~12 13~24
    8881 7edu:A
    (2.3Å)
    		 12 N/A URS00008E394B N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:1 1~3,5~12
    8882 7edu:B
    (2.3Å)
    		 12 N/A URS00008E394B N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:1~12 1~3,5~12
    8883 7edu:C
    (2.3Å)
    		 12 N/A URS00008E394B N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:D:1~12 1~3,5~8,10~12
    8884 7edu:D
    (2.3Å)
    		 12 N/A URS00008E394B N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:C:1~12 1~3,5~8,10~12
    8885 7efg:A
    (2.6Å)
    		 19 N/A URS000080E16F N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A-2:1~19 1~5,7~19
    8886 7efh:A
    (2.7Å)
    		 19 N/A URS000080E16F N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A-2:1~19 1~5,7~19
    8887 7efi:A
    (2.9Å)
    		 19 N/A N/A N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A-2:1~19 1~4,7~19
    8888 7egq:I
    (3.35Å)
    		 25 N/A URS00021ED98C N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 34143953 Assembly1
    rna:J:18~50 10~20,22~33
    8889 7egq:J
    (3.35Å)
    		 33 N/A URS0002311969 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 34143953 Assembly1
    rna:I:9~33 27~50
    8890 7egq:L
    (3.35Å)
    		 25 N/A URS00021ED98C N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 34143953 Assembly1
    rna:M:18~50 10~20,22~33
    8891 7egq:M
    (3.35Å)
    		 33 N/A URS0002311969 N/A Severe
    acute
    respiratory
    syndrome
    coronavirus
    2
    2697049    		 34143953 Assembly1
    rna:L:9~33 27~50
    8892 7ei7:A
    (3.2Å)
    		 19 N/A URS00023358D6 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:1~19 1~5,7~19
    8893 7ei7:B
    (3.2Å)
    		 19 N/A URS00023358D6 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:1~19 1~5,7~19
    8894 7ei8:A
    (3.1Å)
    		 19 N/A URS00023358B3 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:1~19 1~5,7~19
    8895 7ei8:B
    (3.1Å)
    		 19 N/A URS00023358B3 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:1~19 1~5,7~19
    8896 7ei8:C
    (3.1Å)
    		 19 N/A URS00023358B3 N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:D:1~19 1~5,7~19
    8897 7ei8:D
    (3.1Å)
    		 19 N/A URS00023358B3 N/A synthetic
    construct
    32630    		 N/A Assembly2
    rna:C:1~19 1~5,7~19
    8898 7ei9:A
    (2.7Å)
    		 19 N/A URS00023358B2 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:1~19 1~5,7~19
    8899 7ei9:B
    (2.7Å)
    		 19 N/A URS00023358B2 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:1~19 1~5,7~19
    8900 7eia:A
    (3.0Å)
    		 19 N/A URS00023358B2 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:1~19 1~5,7~19
    << < 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.