SEQ2FUN

FURNA
Download all results in tab-seperated text for 14210 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    801 2npz:D
    (3.35Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 17582172 Assembly1
    rna:A:1~13 37~38,41~42
    rna:B:2~13 42~43
    rna:C:15~31 31~36,41,43~49
    802 2nuf:C
    (2.5Å)
    		 28 N/A URS000080DD89 N/A synthetic
    construct
    32630    		 18047582 Assembly1
    rna:D:1~28 1,27~28
    803 2nuf:D
    (2.5Å)
    		 28 N/A URS000080DD89 N/A synthetic
    construct
    32630    		 18047582 Assembly1
    rna:C:1~28 1,27~28
    804 2nug:C
    (1.7Å)
    		 11 N/A URS000080DF34 N/A synthetic
    construct
    32630    		 18047582 Assembly1
    rna:E:17~27 2~11
    rna:D:2~12 11~12
    805 2nug:D
    (1.7Å)
    		 11 N/A URS000080DF34 N/A synthetic
    construct
    32630    		 18047582 Assembly1
    rna:C:2~12 11~12
    rna:F:17~27 2~11
    806 2nug:E
    (1.7Å)
    		 11 N/A URS000080DDD6 N/A synthetic
    construct
    32630    		 18047582 Assembly1
    rna:C:2~12 17~26
    807 2nug:F
    (1.7Å)
    		 11 N/A URS000080DDD6 N/A synthetic
    construct
    32630    		 18047582 Assembly1
    rna:D:2~12 17~26
    808 2nz4:E
    (2.498Å)
    		 13 N/A URS000080E2F9 N/A Bacillus
    anthracis
    1392    		 17196404 Assembly1
    rna:P:12~141 0~5,7~11
    809 2nz4:F
    (2.498Å)
    		 13 N/A URS000080E2F9 N/A Bacillus
    anthracis
    1392    		 17196404 Assembly2
    rna:Q:12~141 0~5,7~11
    810 2nz4:G
    (2.498Å)
    		 13 N/A URS000080E2F9 N/A Bacillus
    anthracis
    1392    		 17196404 Assembly3
    rna:R:12~141 0~5,7~11
    811 2nz4:H
    (2.498Å)
    		 13 N/A URS000080E2F9 N/A Bacillus
    anthracis
    1392    		 17196404 Assembly4
    rna:S:12~141 0~5,7~11
    812 2nz4:P
    (2.498Å)
    		 141 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080E011 RF00234 Bacillus
    anthracis
    1392    		 17196404 Assembly1
    rna:E:-1~11 12,23~30,32~33,50,52~59,111~11
    2
    813 2nz4:Q
    (2.498Å)
    		 141 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080E011 RF00234 Bacillus
    anthracis
    1392    		 17196404 Assembly2
    rna:F:-1~11 12,23~30,32~33,50,52~57,59,111
    ~112
    814 2nz4:R
    (2.498Å)
    		 141 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080E011 RF00234 Bacillus
    anthracis
    1392    		 17196404 Assembly3
    rna:G:-1~11 12,23~30,32~33,50,52~59,111~11
    2
    815 2nz4:S
    (2.498Å)
    		 141 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080E011 RF00234 Bacillus
    anthracis
    1392    		 17196404 Assembly4
    rna:H:-1~11 12,23~30,32~33,50,52~59,111~11
    2
    816 2o3v:A
    (2.8Å)
    		 22 N/A URS000080DDFE N/A synthetic
    construct
    32630    		 17705310 Assembly1
    rna:B:26~46 3~15,17~23
    817 2o3v:B
    (2.8Å)
    		 21 N/A URS000080DDFE N/A synthetic
    construct
    32630    		 17705310 Assembly1
    rna:A:2~23 26~39,42~46
    818 2o3w:A
    (2.8Å)
    		 22 N/A URS000080DDFE N/A synthetic
    construct
    32630    		 17705310 Assembly1
    rna:B:26 3~15,17~23
    819 2o3w:B
    (2.8Å)
    		 21 N/A URS000080DDFE N/A synthetic
    construct
    32630    		 17705310 Assembly1
    rna:A:2~23 26~39,42~46
    820 2o3x:A
    (2.9Å)
    		 21 N/A URS000080E29E N/A synthetic
    construct
    32630    		 17705310 Assembly1
    rna:B:26 3~5,7~16,19~23
    821 2o3x:B
    (2.9Å)
    		 21 N/A URS000080E29E N/A synthetic
    construct
    32630    		 17705310 Assembly1
    rna:A:3~23 26~39,42,44~46
    822 2o3y:A
    (2.7Å)
    		 22 N/A URS000080DDFE N/A synthetic
    construct
    32630    		 17705310 Assembly1
    rna:B:26~46 3~15,17~23
    823 2o3y:B
    (2.7Å)
    		 21 N/A URS000080DDFE N/A synthetic
    construct
    32630    		 17705310 Assembly1
    rna:A:2~23 26~39,42~46
    824 2oe5:A
    (1.51Å)
    		 16 N/A URS000080E0E3 N/A synthetic
    construct
    32630    		 17258916 Assembly1
    rna:B:84~100 2~3,1404~1413,14~17
    825 2oe5:B
    (1.51Å)
    		 17 N/A URS000080E0F2 N/A synthetic
    construct
    32630    		 17258916 Assembly1
    rna:A:2~17 84~86,1487~1490,1492~1497,98~1
    00
    826 2oe6:A
    (2.4Å)
    		 16 N/A URS000080DDFB N/A synthetic
    construct
    32630    		 17258916 Assembly1
    rna:B:83~99 2~3,1404~1413,14~16
    827 2oe6:B
    (2.4Å)
    		 17 N/A URS000080E1C5 N/A synthetic
    construct
    32630    		 17258916 Assembly1
    rna:A:1~16 84~86,1487~1490,1492~1497,98~9
    9
    828 2oe8:A
    (1.8Å)
    		 16 N/A URS000080DDFB N/A synthetic
    construct
    32630    		 17258916 Assembly1
    rna:B:83 2~3,1404~1413,14~16
    829 2oe8:B
    (1.8Å)
    		 17 N/A URS000080E1C5 N/A synthetic
    construct
    32630    		 17258916 Assembly1
    rna:A:1~16 84~86,1487~1490,1492~1497,98~9
    9
    830 2oeu:A
    (2.0Å)
    		 43 EC:3.1.-.-
    GO:0004540 (F) RNA nuclease activity    		 URS000080DF75 RF00163 synthetic
    construct
    32630    		 18420140 Assembly1
    rna:B:1~20 1~5,9~14,17~18,20,28,30~31,36,
    38~43
    831 2oeu:B
    (2.0Å)
    		 20 N/A URS000080DDC4 N/A synthetic
    construct
    32630    		 18420140 Assembly1
    rna:A:1~43 1~15,17~20
    832 2oij:A
    (2.31Å)
    		 23 N/A URS000080DD3F N/A synthetic
    construct
    32630    		 12736317 Assembly1
    rna:B:1~23 1~8,10~16,18~23
    833 2oij:B
    (2.31Å)
    		 23 N/A URS000080DD3F N/A synthetic
    construct
    32630    		 12736317 Assembly1
    rna:A:1~23 1~8,10~16,18~23
    834 2oiy:A
    (1.6Å)
    		 23 N/A URS000080DD3F N/A synthetic
    construct
    32630    		 20460458 Assembly1
    rna:B:1~23 1~8,10~23
    835 2oiy:B
    (1.6Å)
    		 23 N/A URS000080DD3F N/A synthetic
    construct
    32630    		 20460458 Assembly1
    rna:A:1~23 1~8,10~23
    836 2oj0:A
    (2.6Å)
    		 23 N/A URS000080DD3F N/A synthetic
    construct
    32630    		 20460458 Assembly1
    rna:B:1~23 1~8,10~23
    837 2oj0:B
    (2.6Å)
    		 23 N/A URS000080DD3F N/A synthetic
    construct
    32630    		 20460458 Assembly1
    rna:A:1~23 1~8,10~23
    838 2om7:B
    (7.3Å)
    		 10 N/A URS000080DEFC N/A Thermus
    thermophilus
    274    		 17349960 Assembly1
    rna:D:52~359 367~368
    839 2om7:D
    (7.3Å)
    		 13 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E0A6 RF00177
    RF01959
    RF01960    		 Thermus
    thermophilus
    274    		 17349960 Assembly1
    rna:B:367~394 55~56,356~357
    840 2om7:M
    (7.3Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E2DD RF00005 Thermus
    thermophilus
    274    		 17349960 Assembly1
    rna:J:2094~2195 19,56
    841 2oom:A

    		 16 N/A URS000080DDA7 N/A synthetic
    construct
    32630    		 17768146 Assembly1
    rna:B:17~32 6~10
    842 2oom:B

    		 16 N/A URS000080E0B9 N/A synthetic
    construct
    32630    		 17768146 Assembly1
    rna:A:1~16 23~27
    843 2otj:0
    (2.9Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 17321546 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    844 2otj:9
    (2.9Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 17321546 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3105
    845 2otl:0
    (2.7Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 17321546 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    846 2otl:9
    (2.7Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 17321546 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3105
    847 2oue:A
    (2.05Å)
    		 13 N/A URS000080E09E N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:B:2~13 -4~-1,2~8
    rna:C:15~31 1~2
    rna:D:31~49 -2~-1,1
    848 2oue:B
    (2.05Å)
    		 12 N/A URS000080DF3F N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:A:-5~8 2~13
    rna:C:15~31 10~12
    rna:D:31~49 11~13
    849 2oue:C
    (2.05Å)
    		 17 N/A URS000080DEF8 N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:A:-5~8 25~27
    rna:B:2~13 23~25
    rna:D:31~49 15~24,26~31
    850 2oue:D
    (2.05Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:A:-5~8 36~38,40~42
    rna:B:2~13 42~43
    rna:C:15~31 31~36,38,40~49
    851 2p7d:B
    (2.25Å)
    		 13 N/A URS000080DFAF N/A synthetic
    construct
    32630    		 17488874
    16411744
    16262240    		 Assembly1
    rna:A:1~5 8~13
    rna:C:15~31 10~12,14
    rna:D:31~49 11~13
    rna:P:6~13 2~7,9
    852 2p7d:C
    (2.25Å)
    		 17 N/A URS000080DEF8 N/A synthetic
    construct
    32630    		 17488874
    16411744
    16262240    		 Assembly1
    rna:B:2~14 15,23~25
    rna:D:31~49 15~24,26~31
    rna:P:6~13 25~27
    853 2p7d:D
    (2.25Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 17488874
    16411744
    16262240    		 Assembly1
    rna:A:1~5 41~42
    rna:B:2~14 42~43
    rna:C:15~31 31~36,38,40~49
    rna:P:6~13 36~38
    854 2p7e:B
    (2.05Å)
    		 13 N/A URS000080DFAF N/A synthetic
    construct
    32630    		 17488874
    16411744
    16262240    		 Assembly1
    rna:A:1~5 8~13
    rna:C:15~31 10~12,14
    rna:D:31~49 11~13
    rna:P:6~13 2~7,9
    855 2p7e:C
    (2.05Å)
    		 17 N/A URS000080DEF8 N/A synthetic
    construct
    32630    		 17488874
    16411744
    16262240    		 Assembly1
    rna:B:2~14 15,23~25
    rna:D:31~49 15~24,26~31
    rna:P:6~13 25~27
    856 2p7e:D
    (2.05Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 17488874
    16411744
    16262240    		 Assembly1
    rna:A:1~5 38,41~42
    rna:B:2~14 42~43
    rna:C:15~31 31~36,38,40~49
    rna:P:6~13 36,38
    857 2p7f:A
    (2.35Å)
    		 13 N/A URS000080E09E N/A synthetic
    construct
    32630    		 17488874
    16411744
    16262240    		 Assembly1
    rna:B:2~13 2~13
    rna:C:15~31 6~7
    rna:D:31~49 4~6
    858 2p7f:B
    (2.35Å)
    		 12 N/A URS000080DF3F N/A synthetic
    construct
    32630    		 17488874
    16411744
    16262240    		 Assembly1
    rna:A:1~13 2~13
    rna:C:15~31 10~12
    rna:D:31~49 11~13
    859 2p7f:C
    (2.35Å)
    		 17 N/A URS000080DEF8 N/A synthetic
    construct
    32630    		 17488874
    16411744
    16262240    		 Assembly1
    rna:A:1~13 25~27
    rna:B:2~13 23~25
    rna:D:31~49 15~24,26~31
    860 2p7f:D
    (2.35Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 17488874
    16411744
    16262240    		 Assembly1
    rna:A:1~13 37~38,41~42
    rna:B:2~13 42~43
    rna:C:15~31 31~36,38,40~49
    861 2p89:A

    		 34 N/A URS000080E1BE N/A Homo
    sapiens
    9606    		 17412831
    993    		 Assembly1
    rna:B:35~48 6~12,23~29
    862 2p89:B

    		 14 N/A URS000080DD4B N/A Homo
    sapiens
    9606    		 17412831
    100    		 Assembly1
    rna:A:1~34 35~40,42~48
    863 2pcw:A

    		 35 N/A URS000080E11B N/A Homo
    sapiens
    9606    		 17466623
    M161_0.6

    1311    		 Assembly1
    rna:B:36~49 5,7~11,24,26~30
    864 2pcw:B

    		 14 N/A URS000080E1DC N/A Homo
    sapiens
    9606    		 17466623 Assembly1
    rna:A:1~35 36~40,43~48
    865 2pn3:A
    (2.9Å)
    		 24 N/A URS000080DF3C N/A synthetic
    construct
    32630    		 18391410 Assembly1
    rna:B:98~117 47~53,56,58~70
    866 2pn3:B
    (2.9Å)
    		 20 N/A URS000080E21F N/A synthetic
    construct
    32630    		 18391410 Assembly1
    rna:A:47~70 98~117
    867 2pn4:A
    (2.32Å)
    		 24 N/A URS000080DF3C N/A synthetic
    construct
    32630    		 18391410 Assembly1
    rna:B:98~117 47~53,56,58~70
    868 2pn4:B
    (2.32Å)
    		 20 N/A URS000080E21F N/A synthetic
    construct
    32630    		 18391410 Assembly1
    rna:A:47~70 98~117
    869 2pn4:C
    (2.32Å)
    		 24 N/A URS000080DF3C N/A synthetic
    construct
    32630    		 18391410 Assembly2
    rna:D:98~117 47~53,56,58~70
    870 2pn4:D
    (2.32Å)
    		 20 N/A URS000080E21F N/A synthetic
    construct
    32630    		 18391410 Assembly2
    rna:C:47~70 98~117
    871 2pn9:A

    		 16 N/A URS000080DDA7 N/A synthetic
    construct
    32630    		 17768146 Assembly1
    rna:B:17~32 6~12
    872 2pn9:B

    		 16 N/A URS000080E0B9 N/A synthetic
    construct
    32630    		 17768146 Assembly1
    rna:A:1~16 22~27
    873 2pwt:A
    (1.8Å)
    		 21 N/A URS000080DF2F N/A synthetic
    construct
    32630    		 17722211 Assembly1
    rna:B:24~44 2~15,18~22
    874 2pwt:B
    (1.8Å)
    		 21 N/A URS000080DF2F N/A synthetic
    construct
    32630    		 17722211 Assembly1
    rna:A:2~22 24~37,40~44
    875 2q1o:A
    (1.1Å)
    		 12 N/A URS000080E2B9 N/A synthetic
    construct
    32630    		 17881374 Assembly1
    rna:B:101~112 101~112
    876 2q1o:B
    (1.1Å)
    		 12 N/A URS000080E2B9 N/A synthetic
    construct
    32630    		 17881374 Assembly1
    rna:A:101~112 101~112
    877 2q1o:C
    (1.1Å)
    		 12 N/A URS000080E2B9 N/A synthetic
    construct
    32630    		 17881374 Assembly2
    rna:D:101~112 101~112
    878 2q1o:D
    (1.1Å)
    		 12 N/A URS000080E2B9 N/A synthetic
    construct
    32630    		 17881374 Assembly2
    rna:C:101~112 101~112
    879 2q1r:A
    (1.12Å)
    		 12 N/A URS000080E0B7 N/A synthetic
    construct
    32630    		 17881374 Assembly1
    rna:A-2:1001~1012 1001~1012
    880 2qa4:0
    (3.0Å)
    		 2753 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 17599351 Assembly1
    rna:9:1~122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    881 2qa4:9
    (3.0Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 17599351 Assembly1
    rna:0:10~2914 80~83,87,91,100~101,103~105
    882 2qek:A
    (1.8Å)
    		 23 N/A URS000080E167 N/A synthetic
    construct
    32630    		 18435520 Assembly1
    rna:B:1~23 1~8,10~23
    883 2qek:B
    (1.8Å)
    		 23 N/A URS000080E167 N/A synthetic
    construct
    32630    		 18435520 Assembly1
    rna:A:1~23 1~7,10~23
    884 2qex:0
    (2.9Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E276 RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 17664317 Assembly1
    rna:9:3001~3122 955~958,1011,1013~1015,1084,10
    99,1124,1130~1132
    885 2qex:9
    (2.9Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 17664317 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3105
    886 2quw:A
    (2.2Å)
    		 12 N/A URS000080E0C8 N/A Tobacco
    ringspot
    virus
    satellite
    RNA
    31504    		 18834200 Assembly1
    rna:B:13~69 1~12
    887 2quw:B
    (2.2Å)
    		 57 N/A URS000080DFDA N/A Tobacco
    ringspot
    virus
    satellite
    RNA
    31504    		 18834200 Assembly1
    rna:A:1~12 13,34,51,54~65
    888 2quw:C
    (2.2Å)
    		 12 N/A URS000080E0C8 N/A Tobacco
    ringspot
    virus
    satellite
    RNA
    31504    		 18834200 Assembly2
    rna:D:13~69 1~12
    889 2quw:D
    (2.2Å)
    		 57 N/A URS000080DFDA N/A Tobacco
    ringspot
    virus
    satellite
    RNA
    31504    		 18834200 Assembly2
    rna:C:1~12 13,34~35,51,54~65
    890 2r1s:A
    (1.4Å)
    		 13 N/A URS000080DEB6 N/A synthetic
    construct
    32630    		 17940138 Assembly1
    rna:B:14~26 1~13
    891 2r1s:B
    (1.4Å)
    		 13 N/A URS000080DEB6 N/A synthetic
    construct
    32630    		 17940138 Assembly1
    rna:A:1~13 14~26
    892 2r20:A
    (1.3Å)
    		 13 N/A URS000080DEB6 N/A synthetic
    construct
    32630    		 17940138 Assembly1
    rna:B:14~26 1~13
    893 2r20:B
    (1.3Å)
    		 13 N/A URS000080DEB6 N/A synthetic
    construct
    32630    		 17940138 Assembly1
    rna:A:1~13 14~26
    894 2r21:A
    (1.59Å)
    		 13 N/A URS000080DEB6 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:14~26 1~13
    895 2r21:B
    (1.59Å)
    		 13 N/A URS000080DEB6 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:1~13 14~26
    896 2r22:A
    (1.4Å)
    		 13 N/A URS000080DEB6 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:14~26 1~13
    897 2r22:B
    (1.4Å)
    		 13 N/A URS000080DEB6 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:1~13 14~26
    898 2r92:T
    (3.8Å)
    		 10 N/A URS000080E066 N/A synthetic
    construct
    32630    		 18004386 Assembly1
    rna:P:8~16 7~14
    899 2rfk:D
    (2.87Å)
    		 21 N/A URS000080E178 N/A synthetic
    construct
    32630    		 18059286 Assembly1
    rna:E:1~26 1~9,17~21
    rna:F:4~17 9~17
    900 2rfk:E
    (2.87Å)
    		 26 N/A URS000080DF8D N/A synthetic
    construct
    32630    		 18059286 Assembly1
    rna:D:1~21 1~5,12~21
    rna:F:4~17 6~12
    << < 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.