SEQ2FUN

FURNA
Download all results in tab-seperated text for 16611 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    801 2mvy:1

    		 10 N/A URS000086850F N/A synthetic
    construct
    32630    		 25611135 Assembly1
    rna:2:11~20 1~10
    802 2mvy:2

    		 10 N/A URS000086850F N/A synthetic
    construct
    32630    		 25611135 Assembly1
    rna:1:1~10 11~20
    803 2mxk:B

    		 10 N/A URS00008116B7 N/A synthetic
    construct
    32630    		 25909229 Assembly1
    rna:A:7~15 27~36
    804 2nok:A
    (3.0Å)
    		 24 N/A URS000080DF3C N/A synthetic
    construct
    32630    		 17131443 Assembly1
    rna:B:98~117 47~53,56,58~69
    805 2nok:B
    (3.0Å)
    		 20 N/A URS000080E21F N/A synthetic
    construct
    32630    		 17131443 Assembly1
    rna:A:47~70 98~117
    806 2nok:C
    (3.0Å)
    		 24 N/A URS000080DF3C N/A synthetic
    construct
    32630    		 17131443 Assembly2
    rna:D:98~117 47~53,58~69
    807 2nok:D
    (3.0Å)
    		 20 N/A URS000080E21F N/A synthetic
    construct
    32630    		 17131443 Assembly2
    rna:C:47~70 98~105,107~117
    808 2noq:A
    (7.3Å)
    		 190 GO:0043022 (F) ribosome binding URS000080E076 RF00458 Cricket
    paralysis
    virus
    12136    		 17115051 Assembly1
    rna:B:500~545 160~162,191~193
    rna:C:1050~1062 189~190
    rna:D:1194~1208 188~190
    809 2noq:B
    (7.3Å)
    		 46 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E36E RF00177 Saccharomyces
    cerevisiae
    4932    		 17115051 Assembly1
    rna:A:4~193 505,518,528~531,533~535
    810 2noq:C
    (7.3Å)
    		 13 N/A URS000080E17D N/A Saccharomyces
    cerevisiae
    4932    		 17115051 Assembly1
    rna:D:1194~1208 1050~1062
    811 2noq:D
    (7.3Å)
    		 15 N/A URS000080E239 N/A Saccharomyces
    cerevisiae
    4932    		 17115051 Assembly1
    rna:A:4~193 1196~1197
    rna:C:1050~1062 1194~1200,1202~1208
    812 2npy:A
    (2.65Å)
    		 13 N/A URS000080DE13 N/A synthetic
    construct
    32630    		 17582172 Assembly1
    rna:B:2~13 2~5,7,9~13
    rna:D:31~49 4,6
    813 2npy:B
    (2.65Å)
    		 12 N/A URS000080DF3F N/A synthetic
    construct
    32630    		 17582172 Assembly1
    rna:A:1~13 2~9,11~13
    rna:C:15~31 10~12
    rna:D:31~49 11~13
    814 2npy:C
    (2.65Å)
    		 17 N/A URS000080DEF8 N/A synthetic
    construct
    32630    		 17582172 Assembly1
    rna:A:1~13 25~26
    rna:B:2~13 23~25
    rna:D:31~49 15~24,26~31
    815 2npy:D
    (2.65Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 17582172 Assembly1
    rna:A:1~13 36~38,41~42
    rna:B:2~13 42~43
    rna:C:15~31 31~36,38,40~49
    816 2npz:A
    (3.35Å)
    		 13 N/A URS000080E09E N/A synthetic
    construct
    32630    		 17582172 Assembly1
    rna:B:2~13 2~5,7,9~13
    rna:C:15~31 6~7
    rna:D:31~49 3~4,6
    817 2npz:B
    (3.35Å)
    		 12 N/A URS000080DF3F N/A synthetic
    construct
    32630    		 17582172 Assembly1
    rna:A:1~13 2~6,8~9,11~13
    rna:C:15~31 10~11
    rna:D:31~49 11~13
    818 2npz:C
    (3.35Å)
    		 17 N/A URS000080DEF8 N/A synthetic
    construct
    32630    		 17582172 Assembly1
    rna:A:1~13 25~26
    rna:B:2~13 24~25
    rna:D:31~49 15~23,26~31
    819 2npz:D
    (3.35Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 17582172 Assembly1
    rna:A:1~13 37~38,41~42
    rna:B:2~13 42~43
    rna:C:15~31 31~36,41,43~49
    820 2nuf:C
    (2.5Å)
    		 28 N/A URS000080DD89 N/A synthetic
    construct
    32630    		 18047582 Assembly1
    rna:D:1~28 1,27~28
    821 2nuf:D
    (2.5Å)
    		 28 N/A URS000080DD89 N/A synthetic
    construct
    32630    		 18047582 Assembly1
    rna:C:1~28 1,27~28
    822 2nug:C
    (1.7Å)
    		 11 N/A URS000080DF34 N/A synthetic
    construct
    32630    		 18047582 Assembly1
    rna:E:17~27 2~11
    rna:D:2~12 11~12
    823 2nug:D
    (1.7Å)
    		 11 N/A URS000080DF34 N/A synthetic
    construct
    32630    		 18047582 Assembly1
    rna:C:2~12 11~12
    rna:F:17~27 2~11
    824 2nug:E
    (1.7Å)
    		 11 N/A URS000080DDD6 N/A synthetic
    construct
    32630    		 18047582 Assembly1
    rna:C:2~12 17~26
    825 2nug:F
    (1.7Å)
    		 11 N/A URS000080DDD6 N/A synthetic
    construct
    32630    		 18047582 Assembly1
    rna:D:2~12 17~26
    826 2nz4:E
    (2.498Å)
    		 13 N/A URS000080E2F9 N/A Bacillus
    anthracis
    1392    		 17196404 Assembly1
    rna:P:12~141 0~5,7~11
    827 2nz4:F
    (2.498Å)
    		 13 N/A URS000080E2F9 N/A Bacillus
    anthracis
    1392    		 17196404 Assembly2
    rna:Q:12~141 0~5,7~11
    828 2nz4:G
    (2.498Å)
    		 13 N/A URS000080E2F9 N/A Bacillus
    anthracis
    1392    		 17196404 Assembly3
    rna:R:12~141 0~5,7~11
    829 2nz4:H
    (2.498Å)
    		 13 N/A URS000080E2F9 N/A Bacillus
    anthracis
    1392    		 17196404 Assembly4
    rna:S:12~141 0~5,7~11
    830 2nz4:P
    (2.498Å)
    		 141 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080E011 RF00234 Bacillus
    anthracis
    1392    		 17196404 Assembly1
    rna:E:-1~11 12,23~30,32~33,50,52~59,111~11
    2
    831 2nz4:Q
    (2.498Å)
    		 141 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080E011 RF00234 Bacillus
    anthracis
    1392    		 17196404 Assembly2
    rna:F:-1~11 12,23~30,32~33,50,52~57,59,111
    ~112
    832 2nz4:R
    (2.498Å)
    		 141 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080E011 RF00234 Bacillus
    anthracis
    1392    		 17196404 Assembly3
    rna:G:-1~11 12,23~30,32~33,50,52~59,111~11
    2
    833 2nz4:S
    (2.498Å)
    		 141 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080E011 RF00234 Bacillus
    anthracis
    1392    		 17196404 Assembly4
    rna:H:-1~11 12,23~30,32~33,50,52~59,111~11
    2
    834 2o3v:A
    (2.8Å)
    		 22 N/A URS000080DDFE N/A synthetic
    construct
    32630    		 17705310 Assembly1
    rna:B:26~46 3~15,17~23
    835 2o3v:B
    (2.8Å)
    		 21 N/A URS000080DDFE N/A synthetic
    construct
    32630    		 17705310 Assembly1
    rna:A:2~23 26~39,42~46
    836 2o3w:A
    (2.8Å)
    		 22 N/A URS000080DDFE N/A synthetic
    construct
    32630    		 17705310 Assembly1
    rna:B:26 3~15,17~23
    837 2o3w:B
    (2.8Å)
    		 21 N/A URS000080DDFE N/A synthetic
    construct
    32630    		 17705310 Assembly1
    rna:A:2~23 26~39,42~46
    838 2o3x:A
    (2.9Å)
    		 21 N/A URS000080E29E N/A synthetic
    construct
    32630    		 17705310 Assembly1
    rna:B:26 3~5,7~16,19~23
    839 2o3x:B
    (2.9Å)
    		 21 N/A URS000080E29E N/A synthetic
    construct
    32630    		 17705310 Assembly1
    rna:A:3~23 26~39,42,44~46
    840 2o3y:A
    (2.7Å)
    		 22 N/A URS000080DDFE N/A synthetic
    construct
    32630    		 17705310 Assembly1
    rna:B:26~46 3~15,17~23
    841 2o3y:B
    (2.7Å)
    		 21 N/A URS000080DDFE N/A synthetic
    construct
    32630    		 17705310 Assembly1
    rna:A:2~23 26~39,42~46
    842 2oe5:A
    (1.51Å)
    		 16 N/A URS000080E0E3 N/A synthetic
    construct
    32630    		 17258916 Assembly1
    rna:B:84~100 2~3,1404~1413,14~17
    843 2oe5:B
    (1.51Å)
    		 17 N/A URS000080E0F2 N/A synthetic
    construct
    32630    		 17258916 Assembly1
    rna:A:2~17 84~86,1487~1490,1492~1497,98~1
    00
    844 2oe6:A
    (2.4Å)
    		 16 N/A URS000080DDFB N/A synthetic
    construct
    32630    		 17258916 Assembly1
    rna:B:83~99 2~3,1404~1413,14~16
    845 2oe6:B
    (2.4Å)
    		 17 N/A URS000080E1C5 N/A synthetic
    construct
    32630    		 17258916 Assembly1
    rna:A:1~16 84~86,1487~1490,1492~1497,98~9
    9
    846 2oe8:A
    (1.8Å)
    		 16 N/A URS000080DDFB N/A synthetic
    construct
    32630    		 17258916 Assembly1
    rna:B:83 2~3,1404~1413,14~16
    847 2oe8:B
    (1.8Å)
    		 17 N/A URS000080E1C5 N/A synthetic
    construct
    32630    		 17258916 Assembly1
    rna:A:1~16 84~86,1487~1490,1492~1497,98~9
    9
    848 2oeu:A
    (2.0Å)
    		 43 GO:0004540 (F) RNA nuclease activity URS000080DF75 RF00163 synthetic
    construct
    32630    		 18420140 Assembly1
    rna:B:1~20 1~5,9~14,17~18,20,28,30~31,36,
    38~43
    849 2oeu:B
    (2.0Å)
    		 20 N/A URS000080DDC4 N/A synthetic
    construct
    32630    		 18420140 Assembly1
    rna:A:1~43 1~15,17~20
    850 2oij:A
    (2.31Å)
    		 23 N/A URS000080DD3F N/A synthetic
    construct
    32630    		 12736317 Assembly1
    rna:B:1~23 1~8,10~16,18~23
    851 2oij:B
    (2.31Å)
    		 23 N/A URS000080DD3F N/A synthetic
    construct
    32630    		 12736317 Assembly1
    rna:A:1~23 1~8,10~16,18~23
    852 2oiy:A
    (1.6Å)
    		 23 N/A URS000080DD3F N/A synthetic
    construct
    32630    		 20460458 Assembly1
    rna:B:1~23 1~8,10~23
    853 2oiy:B
    (1.6Å)
    		 23 N/A URS000080DD3F N/A synthetic
    construct
    32630    		 20460458 Assembly1
    rna:A:1~23 1~8,10~23
    854 2oj0:A
    (2.6Å)
    		 23 N/A URS000080DD3F N/A synthetic
    construct
    32630    		 20460458 Assembly1
    rna:B:1~23 1~8,10~23
    855 2oj0:B
    (2.6Å)
    		 23 N/A URS000080DD3F N/A synthetic
    construct
    32630    		 20460458 Assembly1
    rna:A:1~23 1~8,10~23
    856 2om7:B
    (7.3Å)
    		 10 N/A URS000080DEFC N/A Thermus
    thermophilus
    274    		 17349960 Assembly1
    rna:D:52~359 367~368
    857 2om7:D
    (7.3Å)
    		 13 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E0A6 RF00177 Thermus
    thermophilus
    274    		 17349960 Assembly1
    rna:B:367~394 55~56,356~357
    858 2om7:M
    (7.3Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E2DD RF00005 Thermus
    thermophilus
    274    		 17349960 Assembly1
    rna:J:2094~2195 19,56
    859 2oom:A

    		 16 N/A URS000080DDA7 N/A synthetic
    construct
    32630    		 17768146 Assembly1
    rna:B:17~32 6~10
    860 2oom:B

    		 16 N/A URS000080E0B9 N/A synthetic
    construct
    32630    		 17768146 Assembly1
    rna:A:1~16 23~27
    861 2otj:0
    (2.9Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540 Haloarcula
    marismortui
    2238    		 17321546 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    862 2otj:9
    (2.9Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 17321546 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3105
    863 2otl:0
    (2.7Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540 Haloarcula
    marismortui
    2238    		 17321546 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    864 2otl:9
    (2.7Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 17321546 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3105
    865 2oue:A
    (2.05Å)
    		 13 N/A URS000080E09E N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:B:2~13 -4~-1,2~8
    rna:C:15~31 1~2
    rna:D:31~49 -2~-1,1
    866 2oue:B
    (2.05Å)
    		 12 N/A URS000080DF3F N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:A:-5~8 2~13
    rna:C:15~31 10~12
    rna:D:31~49 11~13
    867 2oue:C
    (2.05Å)
    		 17 N/A URS000080DEF8 N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:A:-5~8 25~27
    rna:B:2~13 23~25
    rna:D:31~49 15~24,26~31
    868 2oue:D
    (2.05Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:A:-5~8 36~38,40~42
    rna:B:2~13 42~43
    rna:C:15~31 31~36,38,40~49
    869 2p7d:B
    (2.25Å)
    		 13 N/A URS000080DFAF N/A synthetic
    construct
    32630    		 17488874
    16411744
    16262240    		 Assembly1
    rna:A:1~5 8~13
    rna:C:15~31 10~12,14
    rna:D:31~49 11~13
    rna:P:6~13 2~7,9
    870 2p7d:C
    (2.25Å)
    		 17 N/A URS000080DEF8 N/A synthetic
    construct
    32630    		 17488874
    16411744
    16262240    		 Assembly1
    rna:B:2~14 15,23~25
    rna:D:31~49 15~24,26~31
    rna:P:6~13 25~27
    871 2p7d:D
    (2.25Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 17488874
    16411744
    16262240    		 Assembly1
    rna:A:1~5 41~42
    rna:B:2~14 42~43
    rna:C:15~31 31~36,38,40~49
    rna:P:6~13 36~38
    872 2p7e:B
    (2.05Å)
    		 13 N/A URS000080DFAF N/A synthetic
    construct
    32630    		 17488874
    16411744
    16262240    		 Assembly1
    rna:A:1~5 8~13
    rna:C:15~31 10~12,14
    rna:D:31~49 11~13
    rna:P:6~13 2~7,9
    873 2p7e:C
    (2.05Å)
    		 17 N/A URS000080DEF8 N/A synthetic
    construct
    32630    		 17488874
    16411744
    16262240    		 Assembly1
    rna:B:2~14 15,23~25
    rna:D:31~49 15~24,26~31
    rna:P:6~13 25~27
    874 2p7e:D
    (2.05Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 17488874
    16411744
    16262240    		 Assembly1
    rna:A:1~5 38,41~42
    rna:B:2~14 42~43
    rna:C:15~31 31~36,38,40~49
    rna:P:6~13 36,38
    875 2p7f:A
    (2.35Å)
    		 13 N/A URS000080E09E N/A synthetic
    construct
    32630    		 17488874
    16411744
    16262240    		 Assembly1
    rna:B:2~13 2~13
    rna:C:15~31 6~7
    rna:D:31~49 4~6
    876 2p7f:B
    (2.35Å)
    		 12 N/A URS000080DF3F N/A synthetic
    construct
    32630    		 17488874
    16411744
    16262240    		 Assembly1
    rna:A:1~13 2~13
    rna:C:15~31 10~12
    rna:D:31~49 11~13
    877 2p7f:C
    (2.35Å)
    		 17 N/A URS000080DEF8 N/A synthetic
    construct
    32630    		 17488874
    16411744
    16262240    		 Assembly1
    rna:A:1~13 25~27
    rna:B:2~13 23~25
    rna:D:31~49 15~24,26~31
    878 2p7f:D
    (2.35Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 17488874
    16411744
    16262240    		 Assembly1
    rna:A:1~13 37~38,41~42
    rna:B:2~13 42~43
    rna:C:15~31 31~36,38,40~49
    879 2p89:A

    		 34 N/A URS000080E1BE N/A Homo
    sapiens
    9606    		 17412831
    993    		 Assembly1
    rna:B:35~48 6~12,23~29
    880 2p89:B

    		 14 N/A URS000080DD4B N/A Homo
    sapiens
    9606    		 17412831
    100    		 Assembly1
    rna:A:1~34 35~40,42~48
    881 2pcw:A

    		 35 N/A URS000080E11B N/A Homo
    sapiens
    9606    		 17466623
    M161_0.6

    1311    		 Assembly1
    rna:B:36~49 5,7~11,24,26~30
    882 2pcw:B

    		 14 N/A URS000080E1DC N/A Homo
    sapiens
    9606    		 17466623 Assembly1
    rna:A:1~35 36~40,43~48
    883 2pn3:A
    (2.9Å)
    		 24 N/A URS000080DF3C N/A synthetic
    construct
    32630    		 18391410 Assembly1
    rna:B:98~117 47~53,56,58~70
    884 2pn3:B
    (2.9Å)
    		 20 N/A URS000080E21F N/A synthetic
    construct
    32630    		 18391410 Assembly1
    rna:A:47~70 98~117
    885 2pn4:A
    (2.32Å)
    		 24 N/A URS000080DF3C N/A synthetic
    construct
    32630    		 18391410 Assembly1
    rna:B:98~117 47~53,56,58~70
    886 2pn4:B
    (2.32Å)
    		 20 N/A URS000080E21F N/A synthetic
    construct
    32630    		 18391410 Assembly1
    rna:A:47~70 98~117
    887 2pn4:C
    (2.32Å)
    		 24 N/A URS000080DF3C N/A synthetic
    construct
    32630    		 18391410 Assembly2
    rna:D:98~117 47~53,56,58~70
    888 2pn4:D
    (2.32Å)
    		 20 N/A URS000080E21F N/A synthetic
    construct
    32630    		 18391410 Assembly2
    rna:C:47~70 98~117
    889 2pn9:A

    		 16 N/A URS000080DDA7 N/A synthetic
    construct
    32630    		 17768146 Assembly1
    rna:B:17~32 6~12
    890 2pn9:B

    		 16 N/A URS000080E0B9 N/A synthetic
    construct
    32630    		 17768146 Assembly1
    rna:A:1~16 22~27
    891 2pwt:A
    (1.8Å)
    		 21 N/A URS000080DF2F N/A synthetic
    construct
    32630    		 17722211 Assembly1
    rna:B:24~44 2~15,18~22
    892 2pwt:B
    (1.8Å)
    		 21 N/A URS000080DF2F N/A synthetic
    construct
    32630    		 17722211 Assembly1
    rna:A:2~22 24~37,40~44
    893 2q1o:A
    (1.1Å)
    		 12 N/A URS000080E2B9 N/A synthetic
    construct
    32630    		 17881374 Assembly1
    rna:B:101~112 101~112
    894 2q1o:B
    (1.1Å)
    		 12 N/A URS000080E2B9 N/A synthetic
    construct
    32630    		 17881374 Assembly1
    rna:A:101~112 101~112
    895 2q1o:C
    (1.1Å)
    		 12 N/A URS000080E2B9 N/A synthetic
    construct
    32630    		 17881374 Assembly2
    rna:D:101~112 101~112
    896 2q1o:D
    (1.1Å)
    		 12 N/A URS000080E2B9 N/A synthetic
    construct
    32630    		 17881374 Assembly2
    rna:C:101~112 101~112
    897 2q1r:A
    (1.12Å)
    		 12 N/A URS000080E0B7 N/A synthetic
    construct
    32630    		 17881374 Assembly1
    rna:A-2:1001~1012 1001~1012
    898 2qa4:0
    (3.0Å)
    		 2753 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540 Haloarcula
    marismortui
    2238    		 17599351 Assembly1
    rna:9:1~122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    899 2qa4:9
    (3.0Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 17599351 Assembly1
    rna:0:10~2914 80~83,87,91,100~101,103~105
    900 2qek:A
    (1.8Å)
    		 23 N/A URS000080E167 N/A synthetic
    construct
    32630    		 18435520 Assembly1
    rna:B:1~23 1~8,10~23
    << < 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.