SEQ2FUN

FURNA
Download all results in tab-seperated text for 1853 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    331 5z3g:B
    (3.65Å)
    		 156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00001BF64E RF00002 Saccharomyces
    cerevisiae
    4932    		 29557065
    441    		 Assembly1
    rna:A:1~3395 3~12,14~22,24~33,35~37,40,52~5
    3,104,136,138~150,152~156
    protein:K:69~235 154~155
    protein:M:1~460 115~116,120,127~131
    protein:P:21~128 28~31
    protein:R:2~204 141~143
    protein:T:10~160 3~4,12~13
    protein:c:2~126 22~25,70~74,83~85,91
    protein:l:3~119 36~38,49,60~61,63~65,86~87,97
    protein:n:14~85 34~36,40~43,56~57,67,94~95,104
    ,111
    332 5z56:B
    (5.1Å)
    		 84 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000075BAAE RF00020 Homo
    sapiens
    9606    		 29360106
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390    		 Assembly1
    protein:A:25~2335 12,20,23,26~29,38~39,44~46,48~
    49,55~58
    protein:d:20~116 87,93~94
    protein:f:2~75 87~88
    protein:e:14~92 88,95
    protein:P:25~229 31~32,51~53
    protein:U:1~26 36~37,47
    rna:F:1~97 42~44
    rna:G:-12~163 40~44
    333 5z56:F
    (5.1Å)
    		 93 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00001EC8D7 RF00026 Homo
    sapiens
    9606    		 29360106
    1334

    1124

    s59

    M021_0.6    		 Assembly1
    protein:A:25~2335 18,21,55~57,64~73
    protein:2:461~689 42~45
    protein:J:216~802 60,93~95
    protein:L:6~795 48~49,60
    protein:N:1~143 1~2,19~24,27~28
    protein:O:19~303 23~24,26~30
    rna:B:8~104 66~67,69~70
    rna:G:-12~163 30,32~41,43~45,73
    rna:H:1~184 47~56,87~95,97
    MG:F:200 72,74
    MG:F:201 53~54,74
    MG:F:204 55,71
    334 5z56:H
    (5.1Å)
    		 136 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003EE995 RF00004 Homo
    sapiens
    9606    		 29360106
    M068_0.6

    1384

    504

    1212

    1373    		 Assembly1
    protein:A:25~2335 20~24,26,30
    protein:k:20~116 98,104~105
    protein:m:2~75 98~99,106
    protein:l:14~92 99,106
    protein:n:4~76 100,168
    protein:p:7~224 163~164,166~167,170
    protein:w:2~499 45~46
    protein:v:18~223 29,39~42
    protein:1:82~1304 31,33,36~37,56
    protein:2:461~689 56~57
    rna:F:1~97 1,3~11,20~22,25~28
    rna:G:-12~163 31~33,35~45
    335 5z57:B
    (6.5Å)
    		 84 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000075BAAE RF00020 Homo
    sapiens
    9606    		 29360106
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390    		 Assembly1
    protein:A:25~2335 12,20,23,26~29,38~39,44~46,48~
    49,55~58
    protein:d:20~116 87,93~94
    protein:f:2~75 87~88
    protein:e:14~92 88,95
    protein:P:25~229 31~32,51~53
    protein:U:1~26 36~37,47
    rna:F:1~97 42~44
    rna:G:-12~163 40~44
    336 5z57:F
    (6.5Å)
    		 93 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00001EC8D7 RF00026 Homo
    sapiens
    9606    		 29360106
    1334

    1124

    s59

    M021_0.6    		 Assembly1
    protein:A:25~2335 18,21,55~57,64~73
    protein:2:461~689 42~45
    protein:J:216~802 60,93~95
    protein:L:6~795 48~49,60
    protein:N:1~143 1~2,19~24,27~28
    protein:O:19~303 23~24,26~30
    rna:B:8~104 66~67,69~70
    rna:G:-12~163 30,32~41,43~45,73
    rna:H:1~184 47~56,87~95,97
    MG:F:200 72,74
    MG:F:201 53~54,74
    MG:F:204 55,71
    337 5z57:H
    (6.5Å)
    		 136 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003EE995 RF00004 Homo
    sapiens
    9606    		 29360106
    M068_0.6

    1384

    504

    1212

    1373    		 Assembly1
    protein:A:25~2335 20~24,26,30
    protein:k:20~116 98,104~105
    protein:m:2~75 98~99,106
    protein:l:14~92 99,106
    protein:n:4~76 100,168
    protein:p:7~224 163~164,166~167,170
    protein:w:2~499 45~46
    protein:v:18~223 29,39~42
    protein:1:82~1304 31,33,36~37,56
    protein:2:461~689 56~57
    rna:F:1~97 1,3~11,20~22,25~28
    rna:G:-12~163 31~33,35~45
    338 5z58:B
    (4.9Å)
    		 84 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000075BAAE RF00020 Homo
    sapiens
    9606    		 29360106
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390    		 Assembly1
    protein:A:25~2335 12~13,20,23,25~29,35,38~39,45,
    48~49,53,55~59
    protein:E:58~356 63~64
    protein:d:20~116 87,93~94
    protein:f:2~75 87~88
    protein:e:14~92 88,95
    protein:T:184~496 50~51
    rna:F:1~97 42~44
    rna:G:-12~163 40~44
    339 5z58:F
    (4.9Å)
    		 93 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00001EC8D7 RF00026 Homo
    sapiens
    9606    		 29360106
    1334

    1124

    s59

    M021_0.6    		 Assembly1
    protein:A:25~2335 18,21,29,55~57,64~71
    protein:2:461~689 42~45
    protein:J:216~802 60,93~95
    protein:L:6~235 48~49,60
    rna:B:8~104 66~67,69~70
    rna:G:-12~163 30,32~41,43~45,73
    rna:H:1~184 47~56,87~95,97
    MG:F:200 72,74
    MG:F:201 53~54,74
    MG:F:204 55,71
    340 5z58:H
    (4.9Å)
    		 136 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003EE995 RF00004 Homo
    sapiens
    9606    		 29360106
    M068_0.6

    1384

    504

    1212

    1373    		 Assembly1
    protein:A:25~2335 20~24,26,30
    protein:k:20~116 98,104~105
    protein:m:2~75 98~99,106
    protein:l:14~92 99,106
    protein:n:4~76 100,168
    protein:p:7~224 163~164,166~167,170
    protein:w:2~499 45~46
    protein:1:82~1304 31,33,36~37,56
    protein:2:461~689 56~57
    rna:F:1~97 1,3~11,20~22,25~28
    rna:G:-12~163 31~33,35~45
    341 5zal:C
    (4.7Å)
    		 58 GO:0035195 (P) miRNA-mediated post-tra...
    GO:0016442 (C) RISC complex    		 URS0000D56C46 RF00027 Homo
    sapiens
    9606    		 29706542
    1011

    509    		 Assembly1
    protein:A:45~1913 1~4,13~15,24~28,70~73
    342 5zam:C
    (5.7Å)
    		 44 GO:0035195 (P) miRNA-mediated post-tra...
    GO:0016442 (C) RISC complex    		 URS0000D56C46 RF00027 Homo
    sapiens
    9606    		 29706542
    74

    1011

    509    		 Assembly1
    protein:A:45~1913 1~4,12~14,45~46,48~49,70~73
    343 6aas:A

    		 28 N/A URS0000EEAD2A N/A Homo
    sapiens
    9606    		 31251801
    1216
    344 6aax:B
    (2.994Å)
    		 28 N/A URS0000EEAD2A N/A Homo
    sapiens
    9606    		 31251801
    1216    		 Assembly1
    protein:A:35~324 932~934,936~938
    345 6aax:D
    (2.994Å)
    		 28 N/A URS0000EEAD2A N/A Homo
    sapiens
    9606    		 31251801
    1216    		 Assembly2
    protein:C:34~325 933~934,936~938
    346 6ah0:B
    (5.7Å)
    		 115 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000075BAAE RF00020 Homo
    sapiens
    9606    		 30315277
    1213

    M150_0.6

    1263

    42

    1267

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390    		 Assembly1
    protein:O:2~140 40~41
    protein:A:56~2335 14,19,24~28,45,47~48,55~56
    347 6ah0:F
    (5.7Å)
    		 69 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00001EC8D7 RF00026 Homo
    sapiens
    9606    		 30315277
    1334

    1124

    1168

    s59

    M021_0.6    		 Assembly1
    rna:H:3~184 85~95
    rna:I:1~144 48~75
    348 6ah0:G
    (5.7Å)
    		 42 N/A N/A N/A Homo
    sapiens
    9606    		 30315277
    605

    1129

    M156_0.6

    596

    609

    332

    M077_0.6

    M149_0.6

    726

    775

    s65

    1074

    798

    1039

    1018

    M012_0.6

    1015

    1094

    1096

    996

    1159

    1158

    772

    465

    611

    1098

    1135

    s95

    725

    765

    1069

    1286

    1061

    1063

    1065

    s101

    M232_0.6

    1106

    1243

    1242

    683

    720

    721

    s67

    686

    1108    		 Assembly1
    rna:H:3~184 131~135,137~142,145~147
    protein:w:1~499 129~130
    349 6ah0:H
    (5.7Å)
    		 109 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003EE995 RF00004 Homo
    sapiens
    9606    		 30315277
    1212

    1373

    504    		 Assembly1
    rna:F:1~107 3~12,14
    rna:G:122~163 31~33,35~46
    protein:p:3~96 163~167,170
    protein:k:20~116 98,104~105
    350 6ah0:I
    (5.7Å)
    		 117 GO:0017070 (F) U6 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005687 (C) U4 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00003F07BD RF00015 Homo
    sapiens
    9606    		 30315277
    s37    		 Assembly1
    rna:F:1~107 1~17,21~22,55~64
    protein:M:4~128 30~32
    protein:P:26~114 119,144
    protein:T:4~74 123,138
    protein:U:7~83 124,127
    protein:V:2~83 125~127
    351 6ahd:B
    (3.8Å)
    		 115 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS000075BAAE RF00020 Homo
    sapiens
    9606    		 30315277
    1213

    M150_0.6

    1263

    42

    1267

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390    		 Assembly1
    protein:A:56~2316 12,14~15,19~20,24~30,35~36,40,
    44~45,47~49,54~57
    protein:a:4~89 80,91
    protein:b:1~82 91~92
    protein:c:20~116 85,93
    protein:d:2~75 93,95,117
    protein:e:14~92 88,95~96,115~116
    protein:f:3~76 89,96
    protein:g:3~85 77,89~90
    protein:E:58~356 6~7
    rna:G:-12~163 40~44
    352 6ahd:F
    (3.8Å)
    		 94 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00001EC8D7 RF00026 Homo
    sapiens
    9606    		 30315277
    1334

    1124

    s59

    M021_0.6    		 Assembly1
    protein:A:56~2316 27~28,38,44~49,51
    protein:O:2~142 47,49
    protein:M:5~128 71~72
    protein:L:52~432 49~51,53~55
    protein:J:436~672 55~56,66~67,78
    protein:z:4~73 102~103
    rna:I:1~144 50~51,53~65,67~75
    rna:G:-12~163 29~36,38~44
    rna:H:3~184 85~95
    353 6ahd:G
    (3.8Å)
    		 77 N/A N/A N/A Homo
    sapiens
    9606    		 30315277
    605

    1129

    M156_0.6

    596

    609

    332

    M077_0.6

    M149_0.6

    726

    775

    s65

    1074

    798

    1039

    1018

    M012_0.6

    1015

    1094

    1096

    996

    1159

    1158

    772

    465

    611

    1098

    1135

    s95

    725

    765

    1069

    1286

    1061

    1063

    1065

    s101

    M232_0.6

    1106

    1243

    1242

    683

    720

    721

    s67

    686

    1108    		 Assembly1
    protein:A:56~2316 -11~-9,-5~-4,-1,1~2,14
    protein:O:2~142 -1,2,4
    protein:C:112~943 -12~-11
    protein:A0:1~73 -4~-3
    protein:1:82~1304 136,142
    rna:B:3~117 -5~-1
    rna:F:1~105 3~11,13~18
    rna:H:3~184 131~135,137~142,145~147
    354 6ahd:H
    (3.8Å)
    		 109 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP    		 URS00003EE995 RF00004 Homo
    sapiens
    9606    		 30315277
    1212

    1373

    504    		 Assembly1
    rna:F:1~105 3~12,14
    rna:G:-12~163 31~33,35~46
    protein:k:20~116 98,104~105
    protein:p:3~96 163~167,170
    protein:w:1~463 53~54
    355 6ahd:I
    (3.8Å)
    		 136 GO:0017070 (F) U6 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005687 (C) U4 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00003F07BD RF00015 Homo
    sapiens
    9606    		 30315277
    995

    1368    		 Assembly1
    protein:A:56~2316 19,54
    protein:N:6~941 19,40~41,48~49,52,54
    protein:M:5~128 29~32,42~43
    protein:L:52~432 16~18,20,29,32,39~41,51,53,56~
    57
    protein:J:436~672 10~13,22~24,57
    protein:P:26~114 126~128,144
    protein:Q:4~74 119~120
    protein:R:15~92 120~121
    protein:S:4~76 121~122
    protein:D:427~2125 71~79
    rna:F:1~105 1~9,11~18,55~62
    356 6ahr:A
    (3.92Å)
    		 341 EC:3.1.26.5 ribonuclease P
    GO:0004526 (F) ribonuclease P activity
    GO:0008033 (P) tRNA processing
    GO:0030677 (C) ribonuclease P complex    		 URS000013F331 RF00009 Homo
    sapiens
    9606    		 30454648
    1165

    1236

    1314

    837

    953

    M348_0.6

    987

    1333

    s49

    M151_0.6

    M044_0.6

    901

    s53

    s52

    506

    M070_0.6

    s61

    21    		 Assembly1
    protein:B:100~1024 2~4,14~17,19~21,28~31,35,57~59
    ,67,69~71,83~92,99,104,106~108
    ,110,256~257,261~263,266~268,2
    70~271,283~284,286,301~303,317
    ~319,328,332
    protein:C:19~238 143~145,180~183,220~222
    protein:D:76~220 6~8,119,121~123,125,336~338
    protein:E:2~148 73,272~276,315
    protein:F:1~156 34,36~39,50~58,62
    protein:G:9~139 28,30~35,37,64~66,265
    protein:I:2~237 23,63,65
    protein:J:2~248 312,314
    protein:K:4~124 121,143~144,146~147,157,182~18
    4,215~219,240~241,243~245
    protein:L:2~363 278,289,291,307~308,310,328,33
    9
    357 6ahu:A
    (3.66Å)
    		 341 EC:3.1.26.5 ribonuclease P
    GO:0004526 (F) ribonuclease P activity
    GO:0008033 (P) tRNA processing
    GO:0030677 (C) ribonuclease P complex    		 URS000013F331 RF00009 Homo
    sapiens
    9606    		 30454648
    1165

    1236

    1314

    837

    953

    M348_0.6

    987

    1333

    s49

    M151_0.6

    M044_0.6

    901

    s53

    s52

    506

    M070_0.6

    s61

    21    		 Assembly1
    protein:B:100~1024 2~4,14~17,19~21,28~31,35,58~59
    ,69~70,82~92,99,105~109,256~25
    7,260~263,266~268,270,283~285,
    302~303,317~319,328,330,332
    protein:C:19~238 143~146,149,181~183,221~222
    protein:D:76~220 7~8,119~123,125,336~338
    protein:E:2~148 73,272~276
    protein:F:1~156 37~40,50~56,58
    protein:G:9~139 27,31~35,37,64~66,265
    protein:H:4~124 291,305
    protein:I:2~237 63,65~66
    protein:K:4~124 144,146~147,156,180,182~183,21
    5~219,238,240~243
    protein:L:2~363 278,289~291,306,308,310~311,33
    9
    rna:T:1~72 79,120,142,244,250,316~317,324
    358 6ahu:T
    (3.66Å)
    		 72 GO:0030533 (F) triplet codon-amino aci... URS0000E60B72 RF00005 Homo
    sapiens
    9606    		 30454648
    1334

    M168_0.6    		 Assembly1
    rna:A:1~341 1,19,54~56,65
    protein:B:100~1024 1~3,72
    protein:D:76~220 47,50~53,58~59
    protein:J:2~248 10,47,67~68
    protein:K:4~124 56~57
    359 6ajk:B
    (3.001Å)
    		 28 N/A URS0000EEAD2A N/A Homo
    sapiens
    9606    		 31251801
    1216    		 Assembly1
    protein:A:33~325 931~934,936~938
    360 6aso:I
    (2.71Å)
    		 70 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS0000D56C4E RF00026 Saccharomyces
    cerevisiae
    4932    		 29717126
    383    		 Assembly1
    protein:A:30~398 36~37,39~44,46~55,57~58,91~92
    protein:B:1~95 110~111,113
    protein:C:1~79 112~113
    protein:F:10~84 112~113
    protein:H:2~108 110,113
    K:I:202 59~60,86~87
    MG:I:203 74~75
    MG:I:204 40~41
    << < 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.