SEQ2FUN

FURNA
Download all results in tab-seperated text for 1853 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
  • Hover over PDB to view the title of the structure.
  • Hover over Rfam to view names of Rfam families.
  • Hover over PubMed to view title of the PubMed publications.
  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    61 3ktv:A
    (3.8Å)
    		 108 GO:0006617 (P) SRP-dependent cotransla...
    GO:0005786 (C) signal recognition part...    		 URS000080E17A RF00017 Homo
    sapiens
    9606    		 20179341
    s71

    1212

    1373

    s72

    1164    		 Assembly1
    protein:B:10~115 141~143,147~151,196~198,204
    MG:A:6 155~156
    62 3ktv:C
    (3.8Å)
    		 108 GO:0006617 (P) SRP-dependent cotransla...
    GO:0005786 (C) signal recognition part...    		 URS000080E17A RF00017 Homo
    sapiens
    9606    		 20179341
    s71

    1212

    1373

    s72

    1164    		 Assembly2
    protein:D:8~115 141~143,147~151,196~198
    MG:C:4 193~194
    63 3nkb:B
    (1.916Å)
    		 64 N/A URS000080DDAA N/A Homo
    sapiens
    9606    		 20677830
    93    		 Assembly1
    rna:A:2~9 31~38
    MG:B:204 55~56
    MG:B:205 57~58
    MG:B:207 64~65
    64 3nnh:E
    (2.7501Å)
    		 11 N/A URS000080E207 N/A Homo
    sapiens
    9606    		 20947024
    M112_0.6

    M108_0.6    		 Assembly1
    protein:A:14~99 3~7,9~10
    protein:C:14~98 8~11
    65 3oin:C
    (1.9Å)
    		 14 N/A URS000080DE57 N/A Saccharomyces
    cerevisiae
    4932    		 21087996
    386    		 Assembly1
    protein:A:28~252 5~12
    protein:B:28~252 5~7,11~13
    66 3pgw:N
    (4.4Å)
    		 163 GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0005685 (C) U1 snRNP    		 URS000032B6B6 RF00003 Homo
    sapiens
    9606    		 21113136
    121

    M319_0.6

    1184

    1202

    518

    s52

    509

    1031

    760
    67 3pgw:R
    (4.4Å)
    		 163 GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0005685 (C) U1 snRNP    		 URS000032B6B6 RF00003 Homo
    sapiens
    9606    		 21113136
    121

    M319_0.6

    1184

    1202

    518

    s52

    509

    1031

    760
    68 3v6y:B
    (2.5Å)
    		 11 N/A URS000080E2E9 N/A Caenorhabditis
    elegans
    6239    		 N/A
    56

    30

    14

    431

    451    		 Assembly1
    protein:A:167~567 3~8,10~13
    69 3v74:B
    (2.3Å)
    		 11 N/A URS000080E2F4 N/A Caenorhabditis
    elegans
    6239    		 N/A
    56

    14

    451

    30

    392

    431    		 Assembly1
    protein:A:168~567 2~8,10~12
    70 4bpb:C
    (2.584Å)
    		 10 N/A URS000080DF81 N/A Homo
    sapiens
    9606    		 22000018
    M054_0.6

    M109_0.6

    M044_0.6    		 Assembly1
    protein:A:236~921 1~2,4~6
    rna:D:1~10 1~10
    71 4bpb:D
    (2.584Å)
    		 10 N/A URS000080DF81 N/A Homo
    sapiens
    9606    		 22000018
    M054_0.6

    M109_0.6

    M044_0.6    		 Assembly1
    protein:A:236~921 4~5,8~10
    rna:C:1~10 1~10
    72 4bs2:B

    		 12 N/A URS000080DF22 N/A Homo
    sapiens
    9606    		 24240615
    M074_0.6

    541    		 Assembly1
    protein:A:96~269 1,3~10
    73 4f3t:R
    (2.25Å)
    		 14 N/A URS000075AFCE N/A Homo
    sapiens
    9606    		 22682761
    399    		 Assembly1
    protein:A:23~859 1~10,17~20
    74 4kr2:C
    (3.292Å)
    		 69 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000305D7E RF00005 Homo
    sapiens
    9606    		 24898252
    1238    		 Assembly1
    protein:A:64~676 1,11,25~29,34~38,67~68,70~71
    protein:A-2:64~676 1,10,28,43~44
    75 4kr3:C
    (3.235Å)
    		 70 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000305D7E RF00005 Homo
    sapiens
    9606    		 24898252
    836

    900

    986

    1238

    952    		 Assembly1
    protein:A:65~678 1,11,26~28,33~38,66~68,70
    protein:A-2:65~678 10~11,28,43~44,51
    76 4kre:R
    (1.754Å)
    		 11 N/A URS000080DD55 N/A Spodoptera
    frugiperda
    7108    		 23746446
    579    		 Assembly1
    protein:A:18~857 1~9,19~20
    77 4kxt:B
    (2.294Å)
    		 12 N/A URS000080E2CC N/A Spodoptera
    frugiperda
    7108    		 23809764
    560    		 Assembly1
    protein:A:22~857 1~8,20~21
    78 4kzz:j
    (7.0305Å)
    		 75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000326EAC RF00005 Homo
    sapiens
    9606    		 23873042
    M352_0.6

    1235

    s46

    1075    		 Assembly1
    protein:Q:6~146 31~34
    rna:i:1~1863 28~30,33,39~41
    rna:k:10~22 33~36
    79 4l8r:A
    (2.6Å)
    		 26 GO:0006398 (P) mRNA 3'-end processing ... URS000233597C RF00032 Homo
    sapiens
    9606    		 23329046
    517    		 Assembly1
    protein:B:63~348 13~21,24~26
    protein:C:127~199 3~10,12,14~16
    80 4l8r:D
    (2.6Å)
    		 19 GO:0006398 (P) mRNA 3'-end processing ... URS000233597C N/A Homo
    sapiens
    9606    		 23329046
    517    		 Assembly2
    protein:E:64~350 12~14,16~17,19~21,24~26
    81 4ola:B
    (2.3Å)
    		 10 N/A URS000080E10F N/A Homo
    sapiens
    9606    		 22539551
    414

    416

    327    		 Assembly1
    protein:A:23~859 1~9,21
    82 4olb:B
    (2.899Å)
    		 10 N/A URS000080E10F N/A Homo
    sapiens
    9606    		 22539551
    414

    416

    327    		 Assembly1
    protein:A:22~859 1~9,21
    83 4p3e:A
    (3.5Å)
    		 124 GO:0006617 (P) SRP-dependent cotransla...
    GO:0005786 (C) signal recognition part...    		 URS000080DE0E RF00017
    RF01856    		 Homo
    sapiens
    9606    		 24700861
    1164

    1212

    1373

    110

    s71

    s72    		 Assembly1
    protein:B:13~117 141~143,147~151,195~198,204
    protein:C:50~244 117~120,166~167,173~174,176,22
    3~226
    MG:A:303 163~164
    84 4pjo:1
    (3.3Å)
    		 48 N/A URS000080E380 N/A Homo
    sapiens
    9606    		 25555158
    509    		 Assembly1
    protein:A:1~84 127~128
    protein:B:6~88 129~130,134
    protein:C:-3~82 122,129~130,132,135~138
    protein:D:10~116 123~125,131~133,135~136
    protein:E:14~90 126,133
    protein:F:3~75 125~126,131~133
    protein:G:3~76 127~128
    protein:K:2~59 135,137~138
    protein:L:2~54 1,9~11,26,28
    rna:X:1~10 1~11,25~26
    EPE:1:201 11,25~26
    K:1:210 124~125
    85 4pjo:2
    (3.3Å)
    		 48 N/A URS000080E380 N/A Homo
    sapiens
    9606    		 25555158
    509    		 Assembly2
    protein:a:2~84 127~128
    protein:b:6~89 129~130,134
    protein:c:-3~83 122,129~130,132,135~137
    protein:d:13~114 125,131~133,135~136
    protein:e:14~90 126,133
    protein:f:2~75 125~126,131~133
    protein:g:4~76 127~128
    protein:k:3~59 135,137~138
    protein:l:2~54 1,9~11,26,28
    rna:x:1~10 1~11,25~26
    EPE:2:201 11,13,26
    86 4pjo:4
    (3.3Å)
    		 49 N/A URS000080E380 N/A Homo
    sapiens
    9606    		 25555158
    509    		 Assembly4
    protein:o:3~83 127~128
    protein:p:6~91 129~130,134
    protein:q:-4~82 122,129~130,132,134~138
    protein:r:10~114 13,31,122~125,131~133,135
    protein:s:14~90 126,133
    protein:t:2~75 125~126,131~133
    protein:u:4~76 127~128
    protein:n:2~59 135,137
    protein:m:2~51 9~11,27
    rna:y:1~10 1~11,25~26
    CL:4:203 135,137
    87 4pkd:V
    (2.5Å)
    		 55 N/A URS000080DF10 N/A Homo
    sapiens
    9606    		 25555158
    19325628
    7984237
    21113136
    506

    518

    s53

    M348_0.6

    M319_0.6    		 Assembly1
    protein:B:6~267 59,65~71,75,86,92~104
    MG:V:201 92,103
    88 4plx:A
    (3.1Å)
    		 76 N/A URS000080DE55 N/A Homo
    sapiens
    9606    		 24952594
    1095

    1287

    M269_0.6

    991

    1093

    1340

    s0

    s100

    1276

    1286

    414

    416

    1284

    327

    1012

    1013
    89 4plx:B
    (3.1Å)
    		 73 N/A URS000080DE55 N/A Homo
    sapiens
    9606    		 24952594
    1095

    1287

    M269_0.6

    991

    1093

    1340

    s0

    s100

    1276

    1286

    414

    416

    1284

    327

    1012

    1013
    90 4plx:C
    (3.1Å)
    		 71 N/A URS000080DE55 N/A Homo
    sapiens
    9606    		 24952594
    1095

    1287

    M269_0.6

    991

    1093

    1340

    s0

    s100

    1276

    1286

    414

    416

    1284

    327

    1012

    1013
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.