SEQ2FUN

FURNA
Download all results in tab-seperated text for 2447 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.
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    # PDB
    (Resolution)
    Length EC number
    & GO term
    RNAcentral Rfam Taxon PubMed ATtRACT
    motif
    Ligand &
    binding nucleotides
    1651 8qyx:C2
    (1.78Å)

    156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000005270 RF00002 Homo
    sapiens

    9606
    39658079
    1227

    592

    M106_0.6

    993

    1215

    1352

    s37

    1238

    1178

    M085_0.6

    1389

    1360

    589
    Assembly1
    protein:B1:26~263 148~155
    protein:F1:2~208 29~31
    protein:H1:2~204 139~143
    protein:J1:2~161 3~5,11~14
    protein:R1:38~156 59~60,98,130~136,146~148
    protein:S1:1~134 22~24,70~75,83~84,87,89~91
    protein:b1:2~123 36~38,49~50,60,62~65,78,86~87,
    95~97

    protein:d1:2~87 32,34~36,40~43,57~58,67,93~95,
    99,101~104,109

    protein:f1:2~51 45~46,50~53,75,111
    protein:F2:4~362 21~22,26~27
    rna:A2:1~5069 3~22,24~37,40~41,53~54,103,108
    ,110~113,123~127,136,138~149,1
    51~156

    K:A2:5419 9~11
    1652 8qzs:2
    (4.1Å)

    98 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP
    URS0000E60B66 RF00004 Homo
    sapiens

    9606
    38778104
    504
    Assembly1
    rna:6:36~105 3~12,14
    rna:Z:29~43 33~44
    protein:B1:394~1304 30~31,34,36,56
    protein:B6:12~101 29,32
    protein:22:13~115 98,104~105
    protein:2B:3~94 162~167,170
    protein:2f:4~75 98~99,106~107
    protein:2b:6~87 102~103
    protein:23:2~84 101,150~151,168,181~182
    protein:2g:4~76 100~101
    protein:2e:11~91 99,106
    protein:21:1~80 103,105
    1653 8qzs:4
    (4.1Å)

    136 GO:0017070 (F) U6 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005687 (C) U4 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS00003F07BD RF00015 Homo
    sapiens

    9606
    38778104
    995

    1368
    Assembly1
    protein:B:433~2125 69~74,76~77,83
    protein:M:5~128 30~32
    protein:7:160~489 23~24
    protein:42:26~114 118,125~128,144
    protein:4f:4~74 119~120,126
    protein:4e:15~92 120~121,141
    protein:4g:4~76 121~122,139
    protein:43:4~74 123,138
    protein:L:52~432 20,32,39,41,53
    protein:N:8~941 19,40~41,49,54
    rna:6:36~105 1~18,21~22,55~61
    1654 8qzs:5
    (4.1Å)

    109 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS000075BAAE RF00020 Homo
    sapiens

    9606
    38778104
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390
    Assembly1
    protein:A:56~2317 11~12,17~19,23,26~29,44~45,48,
    54~56

    protein:5e:14~90 88,95,116~117
    protein:53:1~84 89~90
    protein:5f:3~75 87~88,93~96,117
    protein:51:2~82 91~92,94,109~110
    protein:5b:6~88 78,91~92,111
    protein:52:10~116 85,87,93~94,96
    protein:5g:3~76 89~90
    rna:z1:-3~8 40~43
    1655 8qzs:6
    (4.1Å)

    59 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS000035C796 RF00026 Homo
    sapiens

    9606
    38778104
    1334

    s59

    M021_0.6
    Assembly1
    protein:A:56~2317 40~45
    protein:X:3~82 45~46,48
    protein:62:1~90 103~104
    protein:J:436~683 55~56,66~67,77~78
    protein:L:52~432 49,52,54~55
    rna:2:3~184 85~95
    rna:4:1~144 51~75
    rna:z1:-3~8 40~43,46
    rna:z2:-3~1 36~39
    1656 8r08:1
    (6.1Å)

    153 GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0005685 (C) U1 snRNP
    URS0000B4D359 RF00003 Homo
    sapiens

    9606
    38778104
    121

    M319_0.6

    1184

    1202

    518

    509

    1031

    760
    Assembly1
    protein:1f:2~75 126,133
    protein:11:2~82 130,135~136,164
    protein:1b:6~91 129,140
    protein:1g:4~76 127~128
    protein:1e:14~90 126,133
    protein:12:10~114 123,125,131~132,135~136
    protein:1K:2~202 30~33,135,137
    1657 8r08:2
    (6.1Å)

    97 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP
    URS00003EE995 RF00004 Homo
    sapiens

    9606
    38778104
    504
    Assembly1
    rna:Z:29~43 33~44
    rna:6:31~106 3~13
    protein:B1:394~1304 30~31,34,56
    protein:B6:12~101 29,32
    protein:22:13~115 98,104~105
    protein:2B:3~94 163,165~167,170
    protein:2f:4~75 99,106~107
    protein:2b:6~87 102~103,181
    protein:23:2~84 101,150~151,181~182
    protein:2g:4~76 100~101
    protein:2e:11~91 99,106
    protein:21:1~80 97,103,105
    1658 8r08:4
    (6.1Å)

    124 GO:0017070 (F) U6 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005687 (C) U4 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS00003F07BD RF00015 Homo
    sapiens

    9606
    38778104
    750

    780

    583

    993
    Assembly1
    protein:M:6~128 5~6,30~32,43
    protein:R:369~474 68~70,73
    protein:L:59~390 17~18,35~37,39~43,57~58
    protein:S:550~774 65,67~68
    protein:41:2~82 85,123,125
    protein:4e:14~89 119,126
    protein:42:22~113 118,124~125,127~128
    protein:4f:4~75 118~119,125~126,144
    protein:4b:8~89 86,122
    protein:4g:3~76 120~121
    rna:6:31~106 1~17,55~64,66~68,73~80
    1659 8r08:5
    (6.1Å)

    104 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS000075BAAE RF00020 Homo
    sapiens

    9606
    38778104
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390
    Assembly1
    protein:A:58~2335 12,17,19~20,23~24,26~29,45,48
    protein:5b:4~89 91~92
    protein:51:1~82 92,109
    protein:52:20~116 87,93~94,96~97,101
    protein:5f:2~75 88,95~96,117
    1660 8r08:6
    (6.1Å)

    53 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS000035C796 RF00026 Homo
    sapiens

    9606
    38778104
    1334

    s59

    M021_0.6
    Assembly1
    protein:M:6~128 71~72
    protein:R:369~474 36,48~49
    protein:J:385~683 56~57,59,76~77
    protein:L:59~390 54~55
    protein:63:14~98 105~106
    protein:68:2~96 103~104,106
    rna:2:3~184 86~88,90~95
    rna:4:1~144 31~36,47,49~75
    1661 8r09:2
    (4.3Å)

    98 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP
    URS00003EE995 RF00004 Homo
    sapiens

    9606
    38778104
    504
    Assembly1
    rna:Z:29~43 33~44
    rna:6:31~106 3~14
    protein:8:42~209 39~40
    protein:B1:394~1304 30~31,34,56
    protein:B6:12~101 29,32
    protein:22:13~115 98,104~105
    protein:2B:3~94 162~167,170
    protein:2f:4~75 99,106~107
    protein:23:2~84 101,150~151,168,181
    protein:2g:4~76 100~101
    protein:2e:11~91 99,106
    protein:21:1~80 103,105
    1662 8r09:4
    (4.3Å)

    128 GO:0017070 (F) U6 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005687 (C) U4 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS00003F07BD RF00015 Homo
    sapiens

    9606
    38778104
    993

    1368

    583
    Assembly1
    protein:41:2~82 85,123,125
    protein:4e:14~89 119,126
    protein:42:22~113 118,124~125
    protein:4f:4~75 119,125~126,144
    protein:43:3~85 121,140
    protein:4g:3~76 120~121
    protein:J:436~683 11~12
    protein:L:52~432 18,20,32,41,53
    protein:N:8~941 19,40~41,49,54
    protein:M:5~128 30~32
    protein:7:160~521 23~24
    rna:z:-3~8 70,72~73
    rna:6:31~106 1~18,21,55~62,75~78
    1663 8r09:5
    (4.3Å)

    112 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS000075BAAE RF00020 Homo
    sapiens

    9606
    38778104
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390
    Assembly1
    protein:E:51~357 5~8
    protein:A:56~2316 11~12,17~19,23,26~29,40,45,48,
    54~56

    protein:53:1~84 89~90
    protein:5f:3~75 87~88,93~96,117
    protein:51:2~82 91~92,94,109~110
    protein:5b:6~88 91~92,111
    protein:52:10~116 85,87,93~94,96
    protein:5g:3~76 89~90
    protein:5e:14~90 88,95,116~117
    rna:z:-3~8 40~43
    1664 8r09:6
    (4.3Å)

    65 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS000035C796 RF00026 Homo
    sapiens

    9606
    38778104
    1334

    s59

    M021_0.6
    Assembly1
    protein:63:14~98 105~106
    protein:68:2~96 103~104
    protein:J:436~683 55,66~67,76~78
    protein:L:52~432 50~52,54~55
    protein:A:56~2316 44~45
    protein:7:160~521 36~37
    rna:2:3~184 85~88,90~95
    rna:z:-3~8 39~44,46
    rna:4:1~144 31~34,38~39,51~75
    1665 8r0a:2
    (5.8Å)

    97 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP
    URS00003EE995 RF00004 Homo
    sapiens

    9606
    38778104
    504
    Assembly1
    rna:Z:29~43 33~44
    rna:6:31~106 3~12
    protein:8:42~209 39,41
    protein:B1:394~1304 30~31,34,56
    protein:B6:12~101 29,32
    protein:22:13~115 98,104~105
    protein:2B:3~94 163,165~167,170
    protein:2f:4~75 99,106~107
    protein:2b:6~87 103,181
    protein:23:2~84 101,150~151,181~182
    protein:2g:4~76 100~101
    protein:2e:11~91 99,106
    protein:21:1~80 103,105
    1666 8r0a:4
    (5.8Å)

    124 GO:0017070 (F) U6 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005687 (C) U4 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS00003F07BD RF00015 Homo
    sapiens

    9606
    38778104
    750

    780

    583

    993
    Assembly1
    protein:M:6~128 29~32
    protein:R:369~474 68~69
    protein:41:2~82 85,123,125
    protein:4e:14~89 119,126
    protein:42:22~113 118,125,127~128
    protein:4f:4~75 118~119,125~126,144
    protein:4b:8~89 122,138
    protein:4g:3~76 120~121
    protein:J:434~683 8~10
    protein:L:59~390 32,35~36,39~41,57
    protein:S:550~777 65~67
    rna:6:31~106 1~17,55~64,66~68,74~80
    1667 8r0a:5
    (5.8Å)

    115 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS000075BAAE RF00020 Homo
    sapiens

    9606
    38778104
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390
    Assembly1
    rna:z:-3~8 41~43
    protein:A:56~2335 12,17,19,23,26~29,45,55
    protein:5b:4~89 78,90
    protein:51:1~82 91~92
    protein:52:20~116 84~85,94
    protein:5e:14~92 95,116~117
    1668 8r0a:6
    (5.8Å)

    59 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS000035C796 RF00026 Homo
    sapiens

    9606
    38778104
    1334

    1168

    s59

    M021_0.6
    Assembly1
    protein:M:6~128 71~72
    protein:X:130~151 36,43
    protein:A:56~2335 44~45
    protein:63:14~98 105~106
    protein:68:2~96 103~104,106
    protein:J:434~683 59,74
    protein:L:59~390 54~55
    rna:z:-3~8 40~45
    rna:2:3~184 86~88,90~95
    rna:4:1~144 31~36,46~47,49~75
    1669 8r0b:2
    (4.4Å)

    98 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP
    URS00003EE995 RF00004 Homo
    sapiens

    9606
    38778104
    504
    Assembly1
    rna:6:31~106 3~14
    rna:Z:29~43 33~44
    protein:8:42~209 39,41
    protein:B1:394~1304 30~31,56
    protein:B6:12~101 29,32
    protein:22:13~115 98,104~105
    protein:2B:3~94 163,165~167,170
    protein:2f:4~75 99,106~107
    protein:23:2~84 101,150~151,168,181
    protein:2g:4~76 100~101
    protein:21:1~80 103,105
    1670 8r0b:4
    (4.4Å)

    128 GO:0017070 (F) U6 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005687 (C) U4 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS00003F07BD RF00015 Homo
    sapiens

    9606
    38778104
    993

    1368

    583
    Assembly1
    rna:6:31~106 1~18,55~62,64,75~79
    rna:z:-5~8 72~74
    protein:M:5~128 30~32
    protein:41:2~82 85,123,125
    protein:4e:14~89 119,126
    protein:42:22~113 118,124~125,127~128
    protein:4f:4~75 119,125~126,144
    protein:4g:3~76 120~121
    protein:L:52~432 18,20,32,39,41,53,58
    protein:N:8~941 19,40,49,54
    1671 8r0b:5
    (4.4Å)

    112 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS000075BAAE RF00020 Homo
    sapiens

    9606
    38778104
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390
    Assembly1
    protein:A:56~2316 11~12,17~19,23,26~29,44~45,48,
    55

    protein:E:51~357 5~7
    protein:5e:14~90 88,95,116~117
    protein:53:1~84 89~90
    protein:5f:3~75 87~88,93~96,117
    protein:51:2~82 91~92,94,109~110
    protein:5b:6~88 91~92,111
    protein:52:10~116 85,87,93~94,96
    protein:5g:3~76 89~90
    rna:z:-5~8 40~44
    1672 8r0b:6
    (4.4Å)

    65 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS000035C796 RF00026 Homo
    sapiens

    9606
    38778104
    1334

    s59

    M021_0.6
    Assembly1
    protein:A:56~2316 44~45
    protein:63:14~98 105~106
    protein:68:2~96 103~104,106
    protein:J:436~683 55,66~67,76~77
    protein:L:52~432 49~50,54~55
    rna:2:3~184 85~88,90~95
    rna:4:1~144 31,33~35,49,51~75
    rna:z:-5~8 39~41,43~44,46
    1673 8r7n:A
    (3.4Å)

    114 GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0005692 (C) U11 snRNP
    URS000000A142 RF00548 Homo
    sapiens

    9606
    39809272
    M150_0.6

    1272

    660

    M025_0.6

    M075_0.6

    M158_0.6
    Assembly1
    protein:B:1~128 19~20,23,32,70~72
    protein:C:10~164 18~21,62~63,66~71,74~75
    protein:D:171~391 106,108~109,122~125
    protein:E:2~43 6~8
    protein:F:1~268 106,109~110,127~128
    protein:h:2~82 92,94,97
    protein:i:11~114 8~9,83~85,87,93~95,98,102,133
    protein:j:3~83 89~91
    protein:k:6~91 91~92,97~98,102,124~126
    protein:l:14~90 88~89,95
    protein:m:2~75 87~88,93~95,97
    protein:n:4~76 89~90
    1674 8rc0:5
    (3.2Å)

    104 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS000075BAAE RF00020 Homo
    sapiens

    9606
    38467877
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390
    Assembly1
    protein:A:58~2335 11~14,16~17,19~20,23~30,45,47~
    48,55~59

    protein:E:95~163 19,52~54
    protein:m:3~75 88,96,117
    protein:j:10~116 87,93~94
    1675 8rg0:7
    (3.4Å)

    31 N/A N/A N/A Homo
    sapiens

    9606
    39289545
    M082_0.6
    Assembly1
    protein:Q:5~100 -8,-4
    protein:n:11~68 -7~-6
    protein:u:1~603 -23~-19,-16,-13
    protein:x:19~88 -32~-31
    protein:y:317~875 -26,-24~-21
    1676 8rg0:A
    (3.4Å)

    121 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00029EB318 RF01960 Homo
    sapiens

    9606
    39289545
    1236

    1311

    1303

    1124

    1333

    1276
    Assembly1
    protein:H:12~82 927~929,1014~1016,1105~1107,11
    27~1129

    protein:I:10~104 924~926,935~936,1007~1010,1012
    ~1013,1015~1018

    protein:M:93~132 1100,1109~1110,1124~1126
    protein:N:19~50 1097,1126
    protein:O:32~233 931~933,940~942,987~990,1003~1
    005,1101~1104,1121~1125,1869

    protein:P:25~139 942,984,986
    protein:Q:5~100 933,989~993,999,1001,1132~1135
    ,1209~1210,1691~1692,1863~1869

    protein:n:11~68 1680~1681,1683
    protein:y:317~875 929~930
    1677 8rl2:L5
    (2.84Å)

    3382 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000075EC78 RF02543 Homo
    sapiens

    9606
    40207627
    29872004

    M054_0.6

    1306

    769

    M329_0.6

    1303

    762

    42

    1148

    1149

    764

    870

    167

    21

    1079

    930

    1029

    1072

    1073

    s77

    1071

    819

    1373

    938

    546

    s52

    s50

    813

    936

    s59

    995

    994

    1314

    991

    1312

    1311

    1150

    123

    124

    125

    1068

    s72

    1060

    s100

    s102

    52

    533

    M227_0.6

    1384

    375

    926

    822

    1128

    988

    1321

    1083

    1081

    704

    705

    1328

    707

    1124

    987

    1126

    703

    M077_0.6

    M290_0.6

    1037

    1336

    1181

    119

    797

    796

    795

    836

    837

    791

    790

    838

    1334

    s70

    1016

    1017

    1393

    610

    1012

    1013

    1234

    1236

    1237

    763

    1231

    1232

    1233

    1335

    1331

    M109_0.6

    440

    1238

    1239

    1333

    589

    776

    s96

    s99

    M273_0.6

    1389

    902

    821

    900

    901

    906

    905

    33

    924

    s17

    853

    M044_0.6

    1245

    1183

    s62

    s61

    1227

    883

    M035_0.6

    1223

    M156_0.6

    1165

    M320_0.6

    1347

    60

    s81

    M349_0.6

    595

    175

    1026

    977

    976

    974

    852

    970

    M154_0.6

    884

    s55

    979

    M153_0.6

    183

    185

    1375

    1036

    706

    1034

    659

    1212

    M102_0.6

    1211

    1216

    1042

    986

    467

    M148_0.6

    1354

    708

    M103_0.6

    169

    91

    1127

    162

    M070_0.6

    M272_0.6

    M020_0.6

    M050_0.6

    1187

    1182

    815

    503

    727

    M347_0.6

    722

    935

    M086_0.6

    1035

    1164

    604

    1166

    606

    886

    156

    748

    749

    608

    1313

    M061_0.6

    s48

    1055

    878

    1059

    953

    952

    872

    954

    957

    1107

    1352

    774

    1215

    M104_0.6

    1173

    770

    773

    958

    1271

    1272

    1273

    779

    778

    1178

    M151_0.6

    78

    1285

    M083_0.6

    1041

    1040

    1043

    1045

    1044

    1288

    354

    1360

    684

    800

    1368

    804
    Assembly1
    rna:L8:1~156 1~22,58,146~147,339,342~348,35
    0~353,355~357,360,362,379~380,
    415~430,1304~1305,1333~1334,13
    71,2308~2309,2312~2313,2333~23
    34,2355,2444,2472,2488,2493~24
    94,2508,2778~2780,3890,4162

    protein:LA:3~206 1539~1541,1577,1613,1622,1627~
    1631,1633,2448,2503,2594~2595,
    2739~2743,3651~3654,3661~3662,
    3667~3668,3677~3686,4081~4082,
    4084,4086~4087,4115,4117~4118,
    4120~4121,4124~4125

    protein:LB:2~403 1591,1593,2044,2835~2840,2856,
    3842,3844,3870~3871,3878,3895~
    3899,4455,4457~4460,4492~4493,
    4515~4518,4520~4521,4524,4564~
    4569,4578~4582,4587~4589,4615~
    4617,4622~4627,4664~4665,4667~
    4668,4674~4676,4714~4718,4723~
    4724,4726~4728,4909,4911~4912,
    4966~4968,4974,4976~4979,4981,
    4984~4988,5000~5003,5041~5043,
    5047,5049~5051,5063

    protein:LC:5~366 222~226,228~229,340,347~352,35
    4~355,357~358,366~368,374~377,
    654~655,667,715,724~725,943,94
    5~947,957,961,974~976,1279~128
    3,1335~1339,1341,1350~1351,135
    7,1359,1364,1370~1376,1506~150
    8,1517,1519~1522,1646,1650,208
    6~2090,2273~2275,2294~2301,233
    3~2334,2338~2341,2343,2349~235
    3,3903~3906,4390~4391

    protein:LD:8~256 4238~4239,4264~4266,4279~4280,
    4323~4327

    protein:LE:41~288 457~459,688~689,710~713,957~96
    1,970,972,977~982,1067,1069~10
    72,1237~1238,1240,1280~1282,12
    84~1288,1291,4754~4755,4883~48
    85,4930~4932,4936,4938~4943,49
    45

    protein:LF:30~248 718,726~730,940~944,974~975,12
    38,1272~1273,1723~1727,1839~18
    41,1876~1877,1895~1897,1905~19
    07,2072~2073,2083,2274~2275

    protein:LG:27~255 6,119~122,142~143,147~151,2471
    ~2472,4074~4076,4085~4088,4116
    ~4117,4125~4128,4157,4161~4165

    protein:LH:1~190 1949,4471,4475~4478,4598,4602~
    4604,4611~4613,4686,4688~4693,
    4700~4702,4704,4764~4765

    protein:LJ:9~178 4204~4205,4241,4248~4251,4253~
    4254,4256~4261

    protein:LL:9~201 46~49,64,71~76,80,85,95~97,101
    ~103,105~107,109~110,159,186,3
    37~338,510,512,1343,1360~1364,
    1366,1371,1378,1382,1393~1395,
    1482,1485,1487~1488,1516,4349,
    4352,4358~4359

    protein:LM:2~136 736~739,748,917~920,935~937,19
    21,1923~1925,4764~4765,4869~48
    72,4879~4881,4891,4895,4897,49
    28~4929

    protein:LN:2~204 8,18~19,27~33,48~49,54~55,57,6
    1~63,65,67~68,76,78~81,98~99,1
    13~115,124~125,147,151~153,278
    ~280,287,292~293,298~303,305,3
    08,313,315,330~333,338,1342,13
    59~1360,1372,1625,2457~2461,36
    69~3671,3926~3929,3937~3938,41
    87

    protein:LO:3~203 432,1309,1912~1914,1928,1930,1
    932,2044~2046,2051~2057,3886~3
    887,4564~4565,4584~4587,4681~4
    682,4711~4713,4757~4761,4768~4
    769,4860,4872~4873,4893,4910~4
    911

    protein:LP:2~158 393~394,398~401,409,422~424,15
    96~1597,1600,2360~2362,2419~24
    22,2794~2795,3855~3861,3891~38
    93,4568~4569,4969~4971,4980~49
    82,5066

    protein:LQ:2~152 1346~1355,1419~1420,1427~1430,
    1456~1461,1497~1498,1501~1504,
    1666~1668,1689~1693,1847,1897~
    1898,2072,2081~2082,2084,2087~
    2088,2268,2277

    protein:LR:2~150 1549~1550,1557~1558,1570~1574,
    2384~2387,2426~2427,2523~2527,
    2606~2608,2615~2616,2633~2634,
    2660,2663~2669,2709,2711,2725,
    2808~2809,2811~2812,2819~2823,
    2863~2864,2887~2892,2896~2898,
    3597,3604~3608,3619,4645~4646,
    4648

    protein:LS:1~176 729,731~733,748~749,939,1919,1
    921,1923,1925,1951~1953,2033~2
    035,2055,2059~2063,4763~4765,4
    870~4871,4874~4876

    protein:LT:32~158 1724,1729~1732,1799~1800,1802~
    1803,1807,1833~1834,1836~1837,
    1876,4227~4228

    protein:LU:18~119 2619~2623,2626,2630~2632,2702~
    2703,2716

    protein:LV:4~140 2845~2848,3842~3843,4493~4494,
    4507~4511,4593~4594,4617~4621,
    4629,4670~4673

    protein:LX:38~156 2,11~17,2434~2438,2472~2475,25
    32~2534,2778~2781,4085

    protein:LY:1~132 194~200,209~210,226~232,235,23
    8~240,242~243,346~347,386~387,
    389,404~405,1367~1368

    protein:LZ:2~136 2556,2572~2583,2655~2656,2754~
    2756,2759~2760,4122~4123,4128~
    4129,4149

    protein:La:2~148 69~70,86~89,92,101,294,315,508
    ~509,1338~1339,1387,1391~1392,
    1396~1398,1419,1468,1488~1489,
    1509~1511,1660~1661,2284,2286~
    2287,2340~2342,2344~2345,4351,
    4354,4364

    protein:Lc:12~106 2656,2658,2660,2673~2675,4120
    protein:Ld:19~123 2369~2370,2372~2375,2390,2832~
    2833,4634~4637,4653,4658,4994~
    4998,5045~5046,5048,5055,5058

    protein:Le:2~129 435~439,449,703,705,957,1301~1
    302,1311~1316,1332~1333,1661~1
    664,1881~1885,1898~1900,2077~2
    079,2279,2281,2300,2302~2303,2
    305~2308,2316~2322,2324~2327,2
    347,3865

    protein:Lf:2~110 438~443,950~951,953,1297~1298,
    1308~1311,1885~1887,1903~1905,
    1915~1919,2065~2070,4748~4754,
    4943~4946

    protein:Lg:2~112 1544,2395,2397,2399~2403,2441,
    2513~2519,2521~2523,2530,2539,
    2582~2584,2587,2596~2599,2601,
    2612~2614,2637~2641,2651~2653,
    2682~2683,2685,2748~2752,2769,
    2783,2803~2807,4119~4122

    protein:Lh:3~123 16~17,19,112,134~137,155,173,2
    65

    protein:Li:2~105 72,158~160,276~277,282~284,304
    ~310,325~327,3722~3723,3725,37
    28

    protein:Lj:2~86 21~24,52,54~55,134,342~343,358
    ,364,370~375,1529~1530,1532~15
    35,1601~1602,1617~1618,1620,16
    37~1638,1646~1647,2404~2406,27
    92~2793,2799~2801,3642~3643

    protein:Lk:2~70 2536~2538,2642,2692~2693,2695~
    2696,2772~2774

    protein:Ll:2~51 362,367~368,2404~2409,2428~243
    1,2512,2781~2783,2789,2792,279
    6

    protein:Lp:3~92 1553~1555,1567,1573,1575~1577,
    2652,2671~2672,2674,2737~2739,
    2741,2874~2876,3635,3692~3693,
    3824

    protein:Lr:2~124 478~480,667,677~679,690,2090,2
    263~2269,2289,2298,2337~2338

    protein:Lt:7~165 1972~1979,1993~1995,2002
    protein:CA:1~245 4596~4598
    protein:CB:11~465 1864~1865,1870~1871,1980~1982,
    1987~1988,2870,2881~2884,3629,
    3631~3633,3695,3697~3698,3751~
    3753,3772~3774,3776~3780,3822~
    3823,3833~3834,3912,3922,3924,
    4291~4296,4304~4305,4308,4336,
    4381~4383,4434~4439,4441,4446,
    4499~4500,4507,4538~4543,4548

    protein:CC:1~80 1737,1859~1862,1889~1890,1930~
    1933,1938,1954~1955,2040~2041,
    2047~2049,3872,3874~3876,4400~
    4401,4418,4463~4464,4488

    protein:CD:1~634 366,387,412~413,1594~1595,1597
    ,1599~1602,1867,1981,2009,2416
    ~2419,2432~2433,2624~2627,2794
    ,3644,3904~3905,3907,4402~4407
    ,4435~4442,4448~4449,4464,4475
    ~4478,4483,4503,4514~4515,4519
    ,4555~4557,4597~4598,4604~4607
    ,4646,4650~4651

    protein:CE:2~114 4468~4470,4590~4593,4612~4614,
    4677~4680,4708,4725~4728,4737~
    4739,4741,4900,4903~4904,4913,
    4961~4962,5069

    protein:CF:1~219 1946~1949,1960~1961,1964~1965,
    1967~1969,1996~2001,2004,2007,
    2012~2014,2017~2021,2032,4693,
    4695

    protein:CH:2~260 1865,1930~1931,1943~1948,2038~
    2040,4291,4305~4308,4317,4319~
    4320,4385,4405~4406,4408~4409,
    4411,4433~4435,4447~4448,4475,
    4477,4540,4546~4549,4604~4606,
    4687,4692,4696~4698

    protein:CI:1~140 3615,4628~4630,4661~4663,5004~
    5006,5009,5038~5041

    protein:CJ:6~286 2872,3753~3754,3770~3773,3779~
    3780,3820,3822,4236,4271~4272,
    4274~4276,4282,4298,4300,4314,
    4328~4329,4332~4333

    protein:CK:4~198 4195~4200,4226,4232~4233,4291,
    4293~4294,4302,4311~4312,4331,
    4333~4337

    protein:CL:1~120 1590~1593,1598,1604~1606,2366,
    2798,2839~2843,2845~2846,2848,
    2858~2860,2884~2886,2888~2889,
    3610,3614,3616~3617,3838,3849,
    4660~4661
    1678 8rl2:L7
    (2.84Å)

    120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00000F9D45 RF00001 Homo
    sapiens

    9606
    40207627
    29872004

    931

    1290

    s51

    879
    Assembly1
    protein:LD:8~256 5~8,10~11,13~15,26~28,30,33~36
    ,44~50,65~66,113~114,116~117

    protein:LJ:9~178 5~6,19,26,28,39~40,42~43,51~52
    ,54~56

    protein:CJ:6~286 9,70,75,98~100,113
    1679 8rl2:L8
    (2.84Å)

    156 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000005270 RF00002 Homo
    sapiens

    9606
    40207627
    29872004

    1227

    592

    s24

    993

    1215

    1352

    s37

    1238

    1178

    M085_0.6

    1389

    1360

    589

    375

    M106_0.6
    Assembly1
    rna:L5:1~5069 3~13,15~22,24~37,40~41,53~54,1
    03,108,110~113,115,125~127,136
    ,138~156

    protein:LC:5~366 21~22,26~27
    protein:LG:27~255 148~156
    protein:LL:9~201 29~31
    protein:LN:2~204 139~143
    protein:LP:2~158 3~5,11~14
    protein:LX:38~156 59~60,98,130~131,133~134,136,1
    46~147

    protein:LY:1~132 22~24,70~75,83,87,90~91
    protein:Lh:3~123 35~39,49,60,62~65,78,86~87,95~
    97

    protein:Lj:2~86 33~36,40~43,57~58,67,93~95,101
    ~104,109

    protein:Ll:2~51 45~46,50~53,75,111
    protein:CD:1~634 50,75~76
    1680 8rm5:2
    (6.9Å)

    98 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP
    URS00003EE995 RF00004 Homo
    sapiens

    9606
    38778104
    504
    Assembly1
    rna:Z:29~43 33~45
    rna:6:32~106 3~14
    protein:8:42~209 39,41
    protein:9:1~462 45~46
    protein:B1:394~1304 30~31,36~37,56
    protein:B6:12~101 29,32
    protein:22:13~115 98,104~105
    protein:2B:3~94 163,165,167,170
    protein:2f:4~75 99,105~107
    protein:2b:6~87 102~103,181
    protein:23:2~84 101~102,150~151
    protein:2g:4~76 100~101
    protein:2e:11~91 99,106
    << < 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.