SEQ2FUN

FURNA
Download all results in tab-seperated text for 19236 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
  • Hover over PDB to view the title of the structure.
  • Hover over Rfam to view names of Rfam families.
  • Hover over PubMed to view title of the PubMed publications.
  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

    • Sort results by
    << < 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 > >>
    Go to page

    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1001 1yrm:C
    (2.5Å)
    		 16 N/A URS000080DF42 N/A synthetic
    construct
    32630    		 16190727 Assembly2
    rna:C-2:1~16 1~16
    1002 1ysh:A
    (9.5Å)
    		 28 N/A URS000080E2C0 N/A synthetic
    construct
    32630    		 15864315 Assembly1
    rna:F:1579~1612 799,815~816
    protein:D:10~82 796~797,818~819
    protein:E:65~148 804~807
    1003 1ysh:B
    (9.5Å)
    		 101 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DD61 RF00177
    RF01959    		 synthetic
    construct
    32630    		 15864315 Assembly1
    protein:E:65~148 656~658,666~669,727~728,739~74
    2,750
    1004 1ysh:F
    (9.5Å)
    		 34 N/A URS000080E2B3 N/A synthetic
    construct
    32630    		 15864315 Assembly1
    rna:A:792~819 1597~1599
    protein:C:1~104 1591~1592,1603~1605
    1005 1ysv:A

    		 27 N/A URS000080E192 N/A Homo
    sapiens
    9606    		 15840813
    1006 1yvp:C
    (2.2Å)
    		 10 N/A URS000080DF3E N/A synthetic
    construct
    32630    		 15907467 Assembly1
    rna:D:1~10 1~8
    protein:A:5 3~10
    1007 1yvp:D
    (2.2Å)
    		 10 N/A URS000080E06D N/A synthetic
    construct
    32630    		 15907467 Assembly1
    rna:C:1~10 3~10
    protein:A:5 1~3
    1008 1yvp:E
    (2.2Å)
    		 10 N/A URS000080DF3E N/A synthetic
    construct
    32630    		 15907467 Assembly2
    rna:F:1~10 1~8
    protein:B:4 3~10
    1009 1yvp:F
    (2.2Å)
    		 10 N/A URS000080E06D N/A synthetic
    construct
    32630    		 15907467 Assembly2
    rna:E:1~10 3~10
    protein:B:4 1~3
    1010 1yxp:A
    (2.4Å)
    		 23 N/A URS000080E167 N/A synthetic
    construct
    32630    		 16403527 Assembly1
    rna:B:1~23 10~16
    1011 1yxp:B
    (2.4Å)
    		 23 N/A URS000080E167 N/A synthetic
    construct
    32630    		 16403527 Assembly1
    rna:A:1~23 10~16
    1012 1yy0:A
    (3.2Å)
    		 16 N/A URS000080DF42 N/A synthetic
    construct
    32630    		 16190727 Assembly1
    rna:B:1~16 1~16
    1013 1yy0:B
    (3.2Å)
    		 16 N/A URS000080DF42 N/A synthetic
    construct
    32630    		 16190727 Assembly1
    rna:A:1~16 1~16
    1014 1yy0:C
    (3.2Å)
    		 16 N/A URS000080DF42 N/A synthetic
    construct
    32630    		 16190727 Assembly2
    rna:C-2:1~16 1~16
    1015 1yyk:C
    (2.5Å)
    		 12 N/A URS000080DE83 N/A synthetic
    construct
    32630    		 16216575 Assembly1
    rna:D:13~24 1~12
    protein:A:1~221 8~10
    1016 1yyk:D
    (2.5Å)
    		 12 N/A URS000080DE83 N/A synthetic
    construct
    32630    		 16216575 Assembly1
    rna:C:1~12 13~24
    protein:A:1~221 17,19
    1017 1yyk:E
    (2.5Å)
    		 12 N/A URS000080DE83 N/A synthetic
    construct
    32630    		 16216575 Assembly1
    rna:F:13~24 1~12
    protein:A:1~221 8~10
    TRS:E:201 4~5
    1018 1yyk:F
    (2.5Å)
    		 12 N/A URS000080DE83 N/A synthetic
    construct
    32630    		 16216575 Assembly1
    rna:E:1~12 13~24
    protein:A:1~221 17~20
    1019 1yyo:C
    (2.9Å)
    		 12 N/A URS000080DE83 N/A synthetic
    construct
    32630    		 16216575 Assembly1
    rna:D:13~24 1~12
    protein:A:1~220 8~10
    1020 1yyo:D
    (2.9Å)
    		 12 N/A URS000080DE83 N/A synthetic
    construct
    32630    		 16216575 Assembly1
    rna:C:1~12 13~24
    protein:A:1~220 17~19
    1021 1yyo:E
    (2.9Å)
    		 12 N/A URS000080DE83 N/A synthetic
    construct
    32630    		 16216575 Assembly1
    rna:F:13~24 1~12
    protein:A:1~220 8~10
    TRS:E:201 3~5
    1022 1yyo:F
    (2.9Å)
    		 12 N/A URS000080DE83 N/A synthetic
    construct
    32630    		 16216575 Assembly1
    rna:E:1~12 13~24
    protein:A:1~220 17~20
    1023 1yyw:E
    (2.8Å)
    		 12 N/A URS000080E28A N/A synthetic
    construct
    32630    		 16216575 Assembly1
    rna:F:13~24 1~12
    protein:A:2~220 10~11
    1024 1yyw:F
    (2.8Å)
    		 12 N/A URS000080E28A N/A synthetic
    construct
    32630    		 16216575 Assembly1
    rna:E:1~12 13~24
    1025 1yyw:G
    (2.8Å)
    		 12 N/A URS000080E28A N/A synthetic
    construct
    32630    		 16216575 Assembly1
    rna:H:13~24 1~12
    protein:A:2~220 8~10
    1026 1yyw:H
    (2.8Å)
    		 12 N/A URS000080E28A N/A synthetic
    construct
    32630    		 16216575 Assembly1
    rna:G:1~12 13~24
    protein:A:2~220 17~19
    1027 1yyw:I
    (2.8Å)
    		 12 N/A URS000080E28A N/A synthetic
    construct
    32630    		 16216575 Assembly2
    rna:J:13~24 1~12
    protein:C:2~219 10~11
    1028 1yyw:J
    (2.8Å)
    		 12 N/A URS000080E28A N/A synthetic
    construct
    32630    		 16216575 Assembly2
    rna:I:1~12 13~24
    1029 1yyw:K
    (2.8Å)
    		 12 N/A URS000080E28A N/A synthetic
    construct
    32630    		 16216575 Assembly2
    rna:L:13~24 1~12
    protein:C:2~219 8~10
    1030 1yyw:L
    (2.8Å)
    		 12 N/A URS000080E28A N/A synthetic
    construct
    32630    		 16216575 Assembly2
    rna:K:1~12 13~24
    protein:C:2~219 17~19
    1031 1yz9:C
    (2.1Å)
    		 11 N/A URS000080E0A2 N/A synthetic
    construct
    32630    		 16216575 Assembly1
    rna:D:12~22 1~9
    rna:F:12~22 10~11
    protein:A:1~220 6~11
    1032 1yz9:D
    (2.1Å)
    		 11 N/A URS000080E0A2 N/A synthetic
    construct
    32630    		 16216575 Assembly1
    rna:C:1~11 12~20
    protein:A:1~220 13~17
    1033 1yz9:E
    (2.1Å)
    		 11 N/A URS000080E0A2 N/A synthetic
    construct
    32630    		 16216575 Assembly1
    rna:F:12~22 1~9
    protein:A:1~220 6~8
    1034 1yz9:F
    (2.1Å)
    		 11 N/A URS000080E0A2 N/A synthetic
    construct
    32630    		 16216575 Assembly1
    rna:C:1~11 21~22
    rna:E:1~11 12~15,17~20
    protein:A:1~220 15~18
    1035 1yzd:A
    (2.35Å)
    		 16 N/A URS000080DF15 N/A synthetic
    construct
    32630    		 16190727 Assembly1
    rna:B:1~16 1~16
    1036 1yzd:B
    (2.35Å)
    		 16 N/A URS000080DF15 N/A synthetic
    construct
    32630    		 16190727 Assembly1
    rna:A:1 1~16
    1037 1yzd:C
    (2.35Å)
    		 16 N/A URS000080DF15 N/A synthetic
    construct
    32630    		 16190727 Assembly2
    rna:C-2:1~16 1~16
    1038 1z2j:A

    		 45 GO:0075523 (P) viral translational fra... URS000080E22A RF00480 Human
    immunodeficiency
    virus
    1
    11676    		 15927637
    1039 1z30:A

    		 18 N/A URS000080E060 N/A synthetic
    construct
    32630    		 15814817
    1040 1z31:A

    		 32 N/A URS000080DE6E N/A synthetic
    construct
    32630    		 15703438
    1041 1z43:A
    (2.6Å)
    		 101 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080DED9 RF00169 Methanocaldococcus
    jannaschii
    2190    		 15928341
    12050674
    1042 1z58:2
    (3.8Å)
    		 2766 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02540
    RF02541    		 Deinococcus
    radiodurans
    1299    		 15943964 Assembly1
    RAP:2:2881 1772~1773,2045,2422,2565~2566,
    2588
    1043 1z79:A
    (2.55Å)
    		 16 N/A URS000080DF42 N/A synthetic
    construct
    32630    		 16190727 Assembly1
    rna:B:1~16 1~16
    1044 1z79:B
    (2.55Å)
    		 16 N/A URS000080DF42 N/A synthetic
    construct
    32630    		 16190727 Assembly1
    rna:A:1~16 1~16
    1045 1z79:C
    (2.55Å)
    		 16 N/A URS000080DF42 N/A synthetic
    construct
    32630    		 16190727 Assembly2
    rna:C-2:1~16 1~16
    1046 1z7f:A
    (2.1Å)
    		 16 N/A URS000080DF42 N/A synthetic
    construct
    32630    		 16190727 Assembly1
    rna:A-2:1~16 1~16
    1047 1z7f:B
    (2.1Å)
    		 16 N/A URS000080DF42 N/A synthetic
    construct
    32630    		 16190727 Assembly2
    rna:C:17 1~16
    1048 1z7f:C
    (2.1Å)
    		 16 N/A URS000080DF42 N/A synthetic
    construct
    32630    		 16190727 Assembly2
    rna:B:1~16 17~32
    1049 1zbh:E
    (3.0Å)
    		 16 N/A URS000080E105 N/A synthetic
    construct
    32630    		 N/A Assembly1
    protein:A:60~348 13~14,16~18
    protein:D:60~348 6,18~21
    1050 1zbh:F
    (3.0Å)
    		 16 N/A URS000080E105 N/A synthetic
    construct
    32630    		 N/A Assembly1
    protein:A:60~348 6,19~21
    protein:D:60~348 12~18
    1051 1zbi:C
    (1.85Å)
    		 12 N/A URS000080E2AD N/A synthetic
    construct
    32630    		 15989951 Assembly1
    dna:D:1~12 1~12
    protein:A:62~196 7~12
    protein:B:59~194 3~6
    1052 1zbl:C
    (2.2Å)
    		 12 N/A URS000080E2AD N/A synthetic
    construct
    32630    		 15989951 Assembly1
    dna:D:13~24 1~12
    protein:A:61~193 3~7
    protein:B:61~193 8~12
    1053 1zbn:A

    		 28 N/A URS000080DE03 N/A synthetic
    construct
    32630    		 15857951 Assembly1
    protein:B:1~17 5~8,10~12,14~22
    1054 1zc5:A

    		 41 GO:0075523 (P) viral translational fra... URS000080DFC4 RF00480 synthetic
    construct
    32630    		 15907937
    1055 1zc8:A
    (13.0Å)
    		 59 GO:0006401 (P) RNA catabolic process URS000080E10D RF00023 Thermus
    thermophilus
    274    		 12677067
    1056 1zc8:B
    (13.0Å)
    		 16 N/A URS000080DE88 N/A Thermus
    thermophilus
    274    		 12677067
    1057 1zc8:C
    (13.0Å)
    		 31 N/A N/A N/A Thermus
    thermophilus
    274    		 12677067
    1058 1zc8:F
    (13.0Å)
    		 29 N/A URS000080E026 N/A Thermus
    thermophilus
    274    		 12677067
    1059 1zc8:G
    (13.0Å)
    		 30 N/A N/A N/A Thermus
    thermophilus
    274    		 12677067
    1060 1zc8:H
    (13.0Å)
    		 59 N/A N/A N/A Thermus
    thermophilus
    274    		 12677067
    1061 1zc8:I
    (13.0Å)
    		 49 N/A URS000080DFAA N/A Thermus
    thermophilus
    274    		 12677067
    1062 1zc8:J
    (13.0Å)
    		 52 N/A N/A N/A Thermus
    thermophilus
    274    		 12677067
    1063 1zc8:Z
    (13.0Å)
    		 91 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFFA RF00177 Thermus
    thermophilus
    274    		 12677067
    1064 1zci:A
    (1.65Å)
    		 23 N/A URS000080E167 N/A synthetic
    construct
    32630    		 16403527 Assembly1
    rna:B:1~23 9~16
    K:A:24 2~4
    1065 1zci:B
    (1.65Å)
    		 23 N/A URS000080E167 N/A synthetic
    construct
    32630    		 16403527 Assembly1
    rna:A:1~23 9~16
    K:B:24 3~4
    1066 1zci:C
    (1.65Å)
    		 23 N/A URS000080E167 N/A synthetic
    construct
    32630    		 16403527 Assembly2
    rna:D:1~23 9~16
    K:C:24 2~4
    1067 1zci:D
    (1.65Å)
    		 23 N/A URS000080E167 N/A synthetic
    construct
    32630    		 16403527 Assembly2
    rna:C:1~23 9~16
    K:D:24 3~4
    1068 1zdh:R
    (2.7Å)
    		 13 N/A URS000080DD3D N/A synthetic
    construct
    32630    		 9245600
    7523953
    8254664    		 Assembly1
    protein:A:1~129 11~12
    protein:B-5:1~129 6,8~9
    1069 1zdh:S
    (2.7Å)
    		 13 N/A URS000080DD3D N/A synthetic
    construct
    32630    		 9245600
    7523953
    8254664    		 Assembly1
    protein:C:1~129 10~12
    protein:C-6:1~129 6,8~9
    rna:S-6:4~16 4~9,12~16
    1070 1zdi:R
    (2.7Å)
    		 16 N/A URS000080DDB6 N/A synthetic
    construct
    32630    		 9245600
    7523953
    8254664    		 Assembly1
    protein:A:1~129 3,11~12
    protein:B-5:1~129 6,8~9
    1071 1zdi:S
    (2.7Å)
    		 13 N/A URS000080DDB6 N/A synthetic
    construct
    32630    		 9245600
    7523953
    8254664    		 Assembly1
    protein:C:1~129 11~12
    protein:C-6:1~129 6,8~9
    rna:S-6:4~16 4~9,12~16
    1072 1zdk:R
    (2.86Å)
    		 19 N/A URS000080DD3D N/A synthetic
    construct
    32630    		 9917072 Assembly1
    protein:A:1~129 12~14
    protein:B-5:1~129 8~12
    1073 1zdk:S
    (2.86Å)
    		 19 N/A URS000080DD3D N/A synthetic
    construct
    32630    		 9917072 Assembly1
    protein:C:1~129 5,12~14
    protein:C-6:1~129 7~8,10~11
    rna:S-6:3~21 4~11,13~20
    1074 1ze2:C
    (3.0Å)
    		 22 N/A URS000080E051 N/A synthetic
    construct
    32630    		 14990747 Assembly1
    protein:A:1~308 7~13,15~18
    1075 1ze2:D
    (3.0Å)
    		 22 N/A URS000080E051 N/A synthetic
    construct
    32630    		 14990747 Assembly2
    protein:B:1~308 7~13,15~18
    1076 1zev:A
    (1.58Å)
    		 18 N/A URS000080DEA4 N/A synthetic
    construct
    32630    		 16269545 Assembly1
    rna:B:1~18 1~18
    1077 1zev:B
    (1.58Å)
    		 18 N/A URS000080DEA4 N/A synthetic
    construct
    32630    		 16269545 Assembly1
    rna:A:1~18 1~18
    1078 1zft:A
    (2.33Å)
    		 13 N/A URS000080E09E N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:B:2~13 2~5,7,9~13
    rna:C:15~31 6~7
    rna:D:31~49 3~6
    1079 1zft:B
    (2.33Å)
    		 12 N/A URS000080E1BF N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:A:1~13 2~13
    rna:C:15~31 10~12
    rna:D:31~49 11~13
    NCO:B:102 12~13
    1080 1zft:C
    (2.33Å)
    		 17 N/A URS000080DEF8 N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:A:1~13 25~27
    rna:B:2~13 23~25
    rna:D:31~49 15~24,26~31
    NCO:D:101 20~21
    1081 1zft:D
    (2.33Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:A:1~13 36~38,40~42
    rna:B:2~13 42~43
    rna:C:15~31 31~36,38,40~49
    NCO:D:101 40~41
    1082 1zfv:A
    (2.4Å)
    		 13 N/A URS000080E09E N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:B:2~13 2~5,7~13
    rna:C:15~31 6~7
    rna:D:31~49 3~6
    1083 1zfv:B
    (2.4Å)
    		 12 N/A URS000080DDAC N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:A:1~13 2~13
    rna:C:15~31 10~12
    rna:D:31~49 11~13
    1084 1zfv:C
    (2.4Å)
    		 17 N/A URS000080DEF8 N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:A:1~13 25~27
    rna:B:2~13 23~25
    rna:D:31~49 15~24,26~31
    NCO:D:101 20~21
    1085 1zfv:D
    (2.4Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:A:1~13 36~38,41~42
    rna:B:2~13 42~43
    rna:C:15~31 31~36,38,40~49
    NCO:D:101 40~41
    1086 1zfx:A
    (2.38Å)
    		 13 N/A URS000080E09E N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:B:2~13 2~5,7~13
    rna:C:15~31 6~7
    rna:D:31~49 3~6
    1087 1zfx:B
    (2.38Å)
    		 12 N/A URS000080DF3D N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:A:1~13 2~13
    rna:C:15~31 10~12
    rna:D:31~49 11~13
    NCO:B:102 12~13
    1088 1zfx:C
    (2.38Å)
    		 17 N/A URS000080DEF8 N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:A:1~13 25~27
    rna:B:2~13 23~25
    rna:D:31~49 15~24,26~31
    NCO:D:101 20~21
    1089 1zfx:D
    (2.38Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:A:1~13 36~38,41~42
    rna:B:2~13 42~43
    rna:C:15~31 31~36,38,40~49
    NCO:D:101 40~41
    1090 1zho:B
    (2.6Å)
    		 38 N/A N/A N/A N/A 16330048 Assembly1
    protein:A:1 3,7~16,26,29~34
    K:A:229 10,30~31
    1091 1zho:D
    (2.6Å)
    		 38 N/A N/A N/A N/A 16330048 Assembly2
    protein:C:1~228 7~11,13~16,29~33
    K:D:39 10,30~31
    1092 1zho:F
    (2.6Å)
    		 38 N/A N/A N/A N/A 16330048 Assembly3
    protein:E:1 3,7~11,13~16,26,29~34
    K:E:229 30~31
    1093 1zho:H
    (2.6Å)
    		 38 N/A N/A N/A N/A 16330048 Assembly4
    protein:G:1~228 2~3,7~11,13~16,29~33
    K:H:39 30~31
    1094 1zif:A

    		 12 N/A URS000080E1F6 N/A synthetic
    construct
    32630    		 9000624
    1095 1zig:A

    		 12 N/A URS000080E035 N/A synthetic
    construct
    32630    		 9000624
    1096 1zih:A

    		 12 N/A URS000080DD9C N/A synthetic
    construct
    32630    		 9000624
    1097 1zjw:B
    (2.5Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000115891 RF00005 Escherichia
    coli
    562    		 15845536 Assembly1
    protein:A:8 902~907,910~913,916,925,927,93
    4~938,969,971~976
    1098 1zl3:B
    (2.8Å)
    		 22 N/A URS000080E309 N/A synthetic
    construct
    32630    		 15987897 Assembly1
    protein:A:9 406~413,415~417
    1099 1zn0:C
    (15.5Å)
    		 40 N/A URS000080DF24 N/A Escherichia
    coli
    562    		 15949441 Assembly1
    protein:A:1~185 1410~1412
    1100 1zn1:B
    (14.1Å)
    		 59 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E0D8 RF02541 Escherichia
    coli
    562    		 15949441
    << < 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 > >>
    Go to page

    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.