SEQ2FUN

FURNA
Download all results in tab-seperated text for 22390 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1101 1zfx:A
    (2.38Å)
    		 13 N/A URS000080E09E N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:B:2~13 2~5,7~13
    rna:C:15~31 6~7
    rna:D:31~49 3~6
    1102 1zfx:B
    (2.38Å)
    		 12 N/A URS000080DF3D N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:A:1~13 2~13
    rna:C:15~31 10~12
    rna:D:31~49 11~13
    NCO:B:102 12~13
    1103 1zfx:C
    (2.38Å)
    		 17 N/A URS000080DEF8 N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:A:1~13 25~27
    rna:B:2~13 23~25
    rna:D:31~49 15~24,26~31
    NCO:D:101 20~21
    1104 1zfx:D
    (2.38Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 16411744 Assembly1
    rna:A:1~13 36~38,41~42
    rna:B:2~13 42~43
    rna:C:15~31 31~36,38,40~49
    NCO:D:101 40~41
    1105 1zho:B
    (2.6Å)
    		 38 N/A N/A N/A N/A 16330048 Assembly1
    protein:A:1 3,7~16,26,29~34
    K:A:229 10,30~31
    1106 1zho:D
    (2.6Å)
    		 38 N/A N/A N/A N/A 16330048 Assembly2
    protein:C:1~228 7~11,13~16,29~33
    K:D:39 10,30~31
    1107 1zho:F
    (2.6Å)
    		 38 N/A N/A N/A N/A 16330048 Assembly3
    protein:E:1 3,7~11,13~16,26,29~34
    K:E:229 30~31
    1108 1zho:H
    (2.6Å)
    		 38 N/A N/A N/A N/A 16330048 Assembly4
    protein:G:1~228 2~3,7~11,13~16,29~33
    K:H:39 30~31
    1109 1zif:A

    		 12 N/A URS000080E1F6 N/A synthetic
    construct
    32630    		 9000624
    1110 1zig:A

    		 12 N/A URS000080E035 N/A synthetic
    construct
    32630    		 9000624
    1111 1zih:A

    		 12 N/A URS000080DD9C N/A synthetic
    construct
    32630    		 9000624
    1112 1zjw:B
    (2.5Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000115891 RF00005 Escherichia
    coli
    562    		 15845536 Assembly1
    protein:A:8 902~907,910~913,916,925,927,93
    4~938,969,971~976
    1113 1zl3:B
    (2.8Å)
    		 22 N/A URS000080E309 N/A synthetic
    construct
    32630    		 15987897 Assembly1
    protein:A:9 406~413,415~417
    1114 1zn0:C
    (15.5Å)
    		 40 N/A URS000080DF24 N/A Escherichia
    coli
    562    		 15949441 Assembly1
    protein:A:1~185 1410~1412
    1115 1zn1:B
    (14.1Å)
    		 59 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E0D8 RF02541 Escherichia
    coli
    562    		 15949441
    1116 1zn1:C
    (14.1Å)
    		 40 N/A URS000080DF24 N/A Escherichia
    coli
    562    		 15949441
    1117 1zo1:F
    (13.8Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Escherichia
    coli
    562    		 15935757 Assembly1
    protein:I:224~724 75~76
    1118 1zo3:A
    (13.8Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Escherichia
    coli
    562    		 15935757 Assembly1
    rna:B:1~76 30~43
    1119 1zo3:B
    (13.8Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Escherichia
    coli
    562    		 15935757 Assembly1
    rna:A:1~76 27~29,31~38
    1120 1zse:R
    (3.0Å)
    		 12 N/A URS000080DDA5 N/A synthetic
    construct
    32630    		 16531233 Assembly1
    protein:A:1~129 311~312
    protein:B:1~129 307~310
    1121 1zx7:A
    (2.15Å)
    		 15 N/A URS000080E2C8 N/A synthetic
    construct
    32630    		 16037995 Assembly1
    rna:B:21~34 2~7,10~16
    1122 1zx7:B
    (2.15Å)
    		 14 N/A URS000080E37D N/A synthetic
    construct
    32630    		 16037995 Assembly1
    rna:A:2~16 21~34
    1123 1zx7:C
    (2.15Å)
    		 15 N/A URS000080E2C8 N/A synthetic
    construct
    32630    		 16037995 Assembly2
    rna:D:21~34 2~7,10~13,15~16
    1124 1zx7:D
    (2.15Å)
    		 14 N/A URS000080E37D N/A synthetic
    construct
    32630    		 16037995 Assembly2
    rna:C:2~16 21~34
    1125 1zx7:E
    (2.15Å)
    		 15 N/A URS000080E2C8 N/A synthetic
    construct
    32630    		 16037995 Assembly3
    rna:F:21~34 2~7,10~16
    1126 1zx7:F
    (2.15Å)
    		 14 N/A URS000080E37D N/A synthetic
    construct
    32630    		 16037995 Assembly3
    rna:E:2~16 21~34
    1127 1zx7:G
    (2.15Å)
    		 15 N/A URS000080E2C8 N/A synthetic
    construct
    32630    		 16037995 Assembly4
    rna:H:21~34 2~7,10~16
    1128 1zx7:H
    (2.15Å)
    		 14 N/A URS000080E37D N/A synthetic
    construct
    32630    		 16037995 Assembly4
    rna:G:2~16 21~34
    1129 1zz5:A
    (3.0Å)
    		 15 N/A URS000080E2C8 N/A synthetic
    construct
    32630    		 16037995 Assembly1
    rna:B:21~34 2~7,10~16
    CNY:A:42 7,9~11
    CNY:A:43 11,14~16
    1130 1zz5:B
    (3.0Å)
    		 14 N/A URS000080E37D N/A synthetic
    construct
    32630    		 16037995 Assembly1
    rna:A:2~16 21~34
    1131 1zz5:C
    (3.0Å)
    		 15 N/A URS000080E2C8 N/A synthetic
    construct
    32630    		 16037995 Assembly2
    rna:D:21~34 2~7,10~16
    CNY:C:41 7,9~11
    CNY:C:44 11,14~16
    1132 1zz5:D
    (3.0Å)
    		 14 N/A URS000080E37D N/A synthetic
    construct
    32630    		 16037995 Assembly2
    rna:C:2~16 21~34
    1133 1zzn:B
    (3.37Å)
    		 197 GO:0000372 (P) Group I intron splicing URS000080E37C RF00028 synthetic
    construct
    32630    		 16141079
    15175762
    15547134
    6101203    		 Assembly1
    rna:C:191~6 1,5~10,59~62,83~84,87,127~128,
    130,172,179~190
    rna:D:3~1 10~12,37~38,87~88,168,170
    protein:A:4~98 1004~1009,1013
    MG:B:1015 88,170,172
    MG:B:3 173~174
    MG:B:1016 124,127,171
    MG:C:207 128,172
    K:B:4 149~152,159~160
    1134 1zzn:C
    (3.37Å)
    		 22 N/A URS000080E339 N/A synthetic
    construct
    32630    		 16141079
    15175762
    15547134
    6101203    		 Assembly1
    rna:B:1~190 191~206,1~6
    MG:C:207 206,1
    1135 205d:A
    (2.64Å)
    		 12 N/A URS000080E26D N/A synthetic
    construct
    32630    		 7719854 Assembly1
    rna:B:13~24 1~12
    1136 205d:B
    (2.64Å)
    		 12 N/A URS000080E26D N/A synthetic
    construct
    32630    		 7719854 Assembly1
    rna:A:1~12 13~24
    1137 219d:B

    		 10 N/A URS000080DE4A N/A synthetic
    construct
    32630    		 7711019 Assembly1
    dna:A:1~10 11~20
    1138 21cb:B
    (3.0Å)
    		 58 GO:0035195 (P) miRNA-mediated post-tra...
    GO:0016442 (C) RISC complex    		 N/A RF00639 Homo
    sapiens
    9606    		 41781616
    s104

    M296_0.6

    592

    1312    		 Assembly1
    protein:A:44~1912 13~16,25~28,32,38~40,60~61
    1139 21cc:A

    		 12 N/A N/A N/A chemical
    production
    metagenome
    2495586    		 N/A Assembly1
    rna:B:13 1~5,9~11
    PP9:B:101 5,11~12
    1140 21cc:B

    		 12 N/A N/A N/A chemical
    production
    metagenome
    2495586    		 N/A Assembly1
    rna:A:1~12 13~17,21~23
    PP9:B:101 17,23~24
    1141 21cn:A
    (3.21Å)
    		 49 N/A N/A N/A Homo
    sapiens
    9606    		 41781616
    M296_0.6

    592

    1312    		 Assembly1
    protein:D:741~1912 1~2,9~14,19~23,36~44,50~53,59~
    61
    CA:D:2001 40~41
    1142 21cq:R
    (3.29Å)
    		 54 N/A N/A N/A synthetic
    construct
    32630    		 41781616 Assembly1
    protein:D:740~1912 1~3,8~14,17~25,37,40~46,51,53~
    56,58~59,63~64
    1143 21kl:C
    (3.19Å)
    		 34 N/A N/A N/A Salicola
    phage
    CGphi29
    754067    		 N/A Assembly1
    protein:A:66~309 10~12,14~18,22~30
    protein:B:66~309 2~6,8~11,28~29,32~34
    dna:D:4~33 5,7,24~31
    dna:E:6~35 6~13,23,25~26
    1144 21we:B
    (2.91Å)
    		 31 N/A N/A N/A Bacteroidales
    bacterium
    2030927    		 N/A Assembly1
    protein:A:1~1174 1~20,28~37
    1145 21wj:B
    (2.87Å)
    		 42 N/A N/A N/A Bacteroidales
    bacterium
    2030927    		 N/A Assembly1
    protein:A:2~1174 1~20,23~27,31~32,34~35,37~39
    rna:C:12~38 20~42
    1146 21wj:C
    (2.87Å)
    		 27 N/A N/A N/A Bacteroidales
    bacterium
    2030927    		 N/A Assembly1
    protein:A:2~1174 14~17,20~22,24,26,28~38
    rna:B:1~42 12~33
    1147 247d:A
    (2.8Å)
    		 11 N/A N/A N/A N/A 8807843 Assembly1
    rna:A-2:1~11 1~7,9~11
    1148 248d:A
    (1.83Å)
    		 11 N/A N/A N/A N/A 8807843 Assembly1
    rna:A-2:1~11 1~7,9~11
    SPM:A:12 9~10
    1149 255d:A
    (2.0Å)
    		 12 N/A URS000080DD82 N/A synthetic
    construct
    32630    		 1922368 Assembly1
    rna:A-2:1~12 1~6,8~12
    1150 280d:A
    (2.4Å)
    		 12 N/A URS000080E1E2 N/A synthetic
    construct
    32630    		 8805576 Assembly1
    rna:B:13~24 1~12
    1151 280d:B
    (2.4Å)
    		 12 N/A URS000080E1E2 N/A synthetic
    construct
    32630    		 8805576 Assembly1
    rna:A:1~12 13~24
    1152 280d:C
    (2.4Å)
    		 12 N/A URS000080E1E2 N/A synthetic
    construct
    32630    		 8805576 Assembly2
    rna:D:37~48 25~36
    1153 280d:D
    (2.4Å)
    		 12 N/A URS000080E1E2 N/A synthetic
    construct
    32630    		 8805576 Assembly2
    rna:C:25~36 37~48
    1154 283d:A
    (2.3Å)
    		 12 N/A URS000080DE79 N/A synthetic
    construct
    32630    		 8917508 Assembly1
    rna:A-2:1~12 1~12
    MN:A:13 8~9
    1155 28sp:A

    		 28 N/A URS000080DF97 N/A Escherichia
    coli
    562    		 10404218
    1156 28sr:A

    		 28 N/A URS000080DF97 N/A Escherichia
    coli
    562    		 10404218
    1157 299d:A
    (3.0Å)
    		 16 N/A URS000080DF69 N/A synthetic
    construct
    32630    		 8953035 Assembly1
    rna:B:114~15 25,24,23,22,21,30,40,50,60,70,
    80,90,101~104
    1158 299d:B
    (3.0Å)
    		 25 N/A URS000080E0D1 N/A synthetic
    construct
    32630    		 8953035 Assembly1
    rna:A:25~104 114,113,112,111,120,130,140,15
    1~153,161,170,11~15
    1159 2a04:A
    (2.95Å)
    		 15 N/A URS000080E2C8 N/A synthetic
    construct
    32630    		 16037995 Assembly1
    rna:B:21~34 2~7,10~16
    NMY:A:17 6~7,9~11
    NMY:A:18 14~16
    1160 2a04:B
    (2.95Å)
    		 14 N/A URS000080E37D N/A synthetic
    construct
    32630    		 16037995 Assembly1
    rna:A:2~16 21~34
    NMY:A:17 26~27
    1161 2a04:C
    (2.95Å)
    		 15 N/A URS000080E2C8 N/A synthetic
    construct
    32630    		 16037995 Assembly2
    rna:D:21~34 2~7,10~16
    NMY:C:1 6~11
    NMY:C:17 11,14~16
    1162 2a04:D
    (2.95Å)
    		 14 N/A URS000080E37D N/A synthetic
    construct
    32630    		 16037995 Assembly2
    rna:C:2~16 21~34
    NMY:C:1 24,26~27
    1163 2a2e:A
    (3.85Å)
    		 304 EC:3.1.26.5 ribonuclease P
    GO:0004526 (F) ribonuclease P activity
    GO:0008033 (P) tRNA processing
    GO:0030680 (C) dimeric ribonuclease P ...    		 URS0000292A32 RF00010 Thermotoga
    maritima
    2336    		 16113684
    1164 2a43:A
    (1.34Å)
    		 26 N/A URS000080DDA9 N/A synthetic
    construct
    32630    		 16114868
    1165 2a64:A
    (3.3Å)
    		 298 EC:3.1.26.5 ribonuclease P
    GO:0004526 (F) ribonuclease P activity
    GO:0008033 (P) tRNA processing
    GO:0030680 (C) dimeric ribonuclease P ...    		 URS000080DD3C RF00011 Geobacillus
    stearothermophilus
    1422    		 16157868
    1166 2a9l:A

    		 38 N/A URS000080E0DA N/A synthetic
    construct
    32630    		 9660971
    1167 2a9x:2

    		 28 N/A URS000080DE03 N/A synthetic
    construct
    32630    		 16156649 Assembly1
    protein:1:1~14 7~11,15~16,18,20~21
    1168 2aar:0
    (3.5Å)
    		 2766 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02541 Deinococcus
    radiodurans
    1299    		 16091460
    1169 2ab4:B
    (2.4Å)
    		 20 N/A URS000080DD87 N/A synthetic
    construct
    32630    		 16300397 Assembly1
    protein:A:1 7~13,15~17
    1170 2adt:A

    		 43 N/A URS000080DD2F N/A synthetic
    construct
    32630    		 16002091 Assembly1
    rna:B:44~86 6,8,10,21~25,36~38
    1171 2adt:B

    		 43 N/A URS000080DD2F N/A synthetic
    construct
    32630    		 16002091 Assembly1
    rna:A:1~43 49,51,53,64~68,79,81
    1172 2agn:A
    (15.0Å)
    		 28 N/A URS000080E22C N/A synthetic
    construct
    32630    		 16271893
    1173 2agn:B
    (15.0Å)
    		 25 N/A URS000080E000 N/A synthetic
    construct
    32630    		 16271893
    1174 2agn:C
    (15.0Å)
    		 76 GO:0043022 (F) ribosome binding URS000080E1C8 RF00061 synthetic
    construct
    32630    		 16271893
    1175 2agn:D
    (15.0Å)
    		 14 N/A URS000080DF46 N/A synthetic
    construct
    32630    		 16271893
    1176 2agn:E
    (15.0Å)
    		 40 N/A URS000080DF76 N/A synthetic
    construct
    32630    		 16271893
    1177 2aht:A

    		 27 N/A URS000080DE67 N/A Saccharomyces
    cerevisiae
    4932    		 17200997
    1178 2ake:B
    (3.1Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000669B12 RF00005 Bos
    taurus
    9913    		 16798914 Assembly1
    protein:A:97~469 33~37
    protein:A-2:97~469 1,68,70,73
    1179 2ann:B
    (2.3Å)
    		 23 N/A URS000080E252 N/A synthetic
    construct
    32630    		 21742260 Assembly1
    protein:A:3~177 11~17
    K:B:301 5~7,17
    1180 2anr:B
    (1.94Å)
    		 25 N/A URS000080DD42 N/A synthetic
    construct
    32630    		 21742260 Assembly1
    protein:A:3~178 211~216
    K:B:301 206~207,217
    1181 2ao5:A
    (2.1Å)
    		 10 N/A URS000080DFE1 N/A synthetic
    construct
    32630    		 16510980 Assembly1
    rna:B:1~10 1~10
    MG:A:198 5~6
    1182 2ao5:B
    (2.1Å)
    		 10 N/A URS000080DFE1 N/A synthetic
    construct
    32630    		 16510980 Assembly1
    rna:A:1~10 1~10
    1183 2ao5:C
    (2.1Å)
    		 10 N/A URS000080DFE1 N/A synthetic
    construct
    32630    		 16510980 Assembly2
    rna:D:1~10 1~10
    1184 2ao5:D
    (2.1Å)
    		 10 N/A URS000080DFE1 N/A synthetic
    construct
    32630    		 16510980 Assembly2
    rna:C:1~10 1~10
    1185 2ap0:A

    		 28 N/A URS000080E359 N/A synthetic
    construct
    32630    		 17000902
    1186 2ap5:A

    		 28 N/A URS000080E359 N/A synthetic
    construct
    32630    		 17000902
    1187 2asb:B
    (1.5Å)
    		 11 N/A URS000080E298 N/A synthetic
    construct
    32630    		 16193062 Assembly1
    protein:A:108~333 1~10
    1188 2atw:B
    (2.25Å)
    		 12 N/A URS000080E10A N/A synthetic
    construct
    32630    		 16193062 Assembly1
    protein:A:107~329 0~10
    1189 2atw:D
    (2.25Å)
    		 12 N/A URS000080E10A N/A synthetic
    construct
    32630    		 16193062 Assembly2
    protein:C:105~329 0~10
    1190 2au4:A

    		 41 N/A URS000080E1AD N/A synthetic
    construct
    32630    		 16510427 Assembly1
    GTP:A:42 8~9,11,15~16,31~32
    1191 2awq:A

    		 17 GO:0030533 (F) triplet codon-amino aci... URS000080DF54 RF00005 synthetic
    construct
    32630    		 16377777
    1192 2az0:C
    (2.6Å)
    		 18 N/A URS000080DDF7 N/A synthetic
    construct
    32630    		 16228003 Assembly1
    rna:D:1~18 1~18
    protein:A:2~71 6~8,16~17
    protein:B:2~72 5~6,16~17
    1193 2az0:D
    (2.6Å)
    		 18 N/A URS000080DDF7 N/A synthetic
    construct
    32630    		 16228003 Assembly1
    rna:C:1~18 1~18
    protein:A:2~71 4~5,15~16
    protein:B:2~72 5,7,15~16
    1194 2az2:C
    (2.6Å)
    		 18 N/A URS000080DDF7 N/A synthetic
    construct
    32630    		 16228003 Assembly1
    rna:D:1~18 1~18
    protein:A:2~71 6~8,16~17
    protein:B:2~71 5~6,15~17
    1195 2az2:D
    (2.6Å)
    		 18 N/A URS000080DDF7 N/A synthetic
    construct
    32630    		 16228003 Assembly1
    rna:C:1~18 1~18
    protein:A:2~71 4~5,14~15
    protein:B:2~71 5,7,15~17
    1196 2azx:C
    (2.8Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002CF5C7 RF00005 Bos
    taurus
    9913    		 16724112 Assembly1
    protein:A:82~468 533~537
    protein:A-2:82~468 501,568,570,573
    1197 2azx:D
    (2.8Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00002CF5C7 RF00005 Bos
    taurus
    9913    		 16724112 Assembly2
    protein:B:82~469 533~537
    1198 2b2e:R
    (3.15Å)
    		 16 N/A URS000080DDB6 N/A synthetic
    construct
    32630    		 16531233 Assembly1
    protein:A:1~129 302,310~311
    protein:B:1~129 305,307~308
    1199 2b2e:S
    (3.15Å)
    		 14 N/A URS000080DDB6 N/A synthetic
    construct
    32630    		 16531233 Assembly1
    protein:C:1~129 410~411
    protein:C-6:1~129 404~405,407~408
    rna:S-6:403~416 403~408,411~416
    1200 2b2g:R
    (3.02Å)
    		 16 N/A URS000080DDB6 N/A synthetic
    construct
    32630    		 16531233 Assembly1
    protein:A:1~129 302,310~311
    protein:B:1~129 305,307~308
    << < 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.