SEQ2FUN

FURNA
Download all results in tab-seperated text for 22390 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1401 2gcs:B
    (2.1Å)
    		 123 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080DF18 RF00234 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 16990543 Assembly1
    rna:A:0~20 23~37,39~40,58,60~65,67,115~11
    7
    MG:B:501 36~37
    MG:B:503 79,81
    MG:B:504 57,59
    1402 2gcv:A
    (2.1Å)
    		 20 N/A URS000080E25B N/A Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 16990543 Assembly1
    rna:B:23~145 1~5,7~19
    MES:A:501 1~2
    1403 2gcv:B
    (2.1Å)
    		 123 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080DF18 RF00234 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 16990543 Assembly1
    rna:A:1~20 23~37,58,60~65,115~117
    MES:A:501 65~66
    MES:B:502 40,65,67
    MG:B:401 36~37
    MG:B:403 79,81
    MG:B:404 57,59
    1404 2gdi:X
    (2.05Å)
    		 80 GO:0030976 (F) thiamine pyrophosphate ... URS000080DDEB RF00059 Escherichia
    coli
    562    		 16728979 Assembly1
    NA:X:122 64~66
    K:X:123 21~22,72
    K:X:124 21~22,43,71~73
    K:X:125 38~39,70~71,73
    MG:X:101 60,78
    TPP:X:100 19,40,42~43,58,72,77~78
    1405 2gdi:Y
    (2.05Å)
    		 80 GO:0030976 (F) thiamine pyrophosphate ... URS000080DDEB RF00059 Escherichia
    coli
    562    		 16728979 Assembly2
    MG:Y:111 60,78
    TPP:Y:100 19,40,42~43,58,72~73,77~78
    1406 2gic:R
    (2.92Å)
    		 45 N/A URS000080E17E N/A synthetic
    construct
    32630    		 16778022 Assembly1
    protein:A:2~422 29~33,35~37
    protein:B:2~422 20~24,26,28
    protein:C:2~422 11~15,17,19
    protein:D:2~422 2~10
    protein:E:2~422 38~42,44~45
    rna:R-2:1~45 1~2,45
    1407 2gio:A

    		 29 N/A URS000080DE0D N/A synthetic
    construct
    32630    		 16710302
    1408 2gip:A

    		 28 N/A URS000080DED0 N/A synthetic
    construct
    32630    		 16710302
    1409 2gis:A
    (2.9Å)
    		 94 GO:0010468 (P) regulation of gene expr... URS000080DF35 RF00162 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 16810258 Assembly1
    MG:A:205 10,63~64
    MG:A:206 84~85
    IRI:A:202 16~18
    IRI:A:203 23,25~28
    IRI:A:204 4~5,88
    SAM:A:301 7,11,45~47,57~59,88~89
    1410 2gje:R
    (3.37Å)
    		 13 N/A URS000080DE5E N/A synthetic
    construct
    32630    		 16923390 Assembly1
    rna:S:40~44 20~23
    protein:A:65~221 17~21
    protein:D:27~173 12~14
    1411 2gjw:E
    (2.85Å)
    		 18 N/A URS000080E337 N/A synthetic
    construct
    32630    		 16690865 Assembly1
    rna:F:3~14 9~12,15~20
    rna:H:15~21 4~10
    protein:A:1~308 14~16
    protein:B:4~307 10~11,13~14,16
    1412 2gjw:F
    (2.85Å)
    		 12 N/A URS000080E0F0 N/A synthetic
    construct
    32630    		 16690865 Assembly1
    rna:E:3~20 4~12
    rna:H:15~21 12~14
    protein:A:1~308 10~11,13
    1413 2gjw:I
    (2.85Å)
    		 19 N/A URS000080E337 N/A synthetic
    construct
    32630    		 16690865 Assembly2
    rna:J:3~14 9~12,15~21
    rna:L:15~21 3~10
    protein:C:1~307 13~16
    protein:D:5~308 10~11,13
    1414 2gjw:J
    (2.85Å)
    		 12 N/A URS000080E0F0 N/A synthetic
    construct
    32630    		 16690865 Assembly2
    rna:I:3~21 4~12
    rna:L:15~21 12~14
    protein:C:1~307 10~11,13
    1415 2gm0:A

    		 35 GO:0019074 (P) viral RNA genome packaging URS000080DE12 RF00175 Human
    immunodeficiency
    virus
    1
    11676    		 16603544 Assembly1
    rna:B:36~70 1~35
    1416 2gm0:B

    		 35 GO:0019074 (P) viral RNA genome packaging URS000080DE12 RF00175 Human
    immunodeficiency
    virus
    1
    11676    		 16603544 Assembly1
    rna:A:1~35 36~70
    1417 2go5:9
    (7.4Å)
    		 90 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E04F RF02540 Triticum
    sp.
    4569    		 16675701 Assembly1
    protein:6:17~97 2854~2857,2895,2904~2906
    1418 2go5:A
    (7.4Å)
    		 127 GO:0006617 (P) SRP-dependent cotransla...
    GO:0005786 (C) signal recognition part...    		 URS000080DFD3 RF00017 Canis
    sp.
    9616    		 16675701 Assembly1
    protein:B:14~120 141~143,147~151,195~198,203~20
    4
    protein:W:326~434 184~185,192~195,207~208
    protein:1:-1~130 231~235
    1419 2grw:A

    		 22 N/A URS000080E363 N/A synthetic
    construct
    32630    		 17449731
    1420 2gtt:W
    (3.49Å)
    		 99 N/A URS000080DE2F N/A synthetic
    construct
    32630    		 16778023 Assembly1
    protein:A:6~448 42~49
    protein:B:5~448 33~40
    protein:C:5~448 24~31
    protein:D:6~448 15~19,21~22
    protein:E:6~448 6~10,12~13
    protein:F:6~448 1~4,96~99
    protein:G:6~448 87~94
    protein:H:5~448 78~82,84~85
    protein:I:6~448 69~76
    protein:J:5~448 60~68
    protein:K:5~448 51~58
    1421 2gtt:X
    (3.49Å)
    		 99 N/A URS000080E002 N/A synthetic
    construct
    32630    		 16778023 Assembly2
    protein:L:5~448 1~4,96~99
    protein:M:5~448 87~94
    protein:N:6~448 78~85
    protein:O:6~448 69~76
    protein:P:5~448 60~67
    protein:Q:6~448 51~55,57~58
    protein:R:5~448 42~49
    protein:S:5~448 33~40
    protein:T:5~448 24~31
    protein:U:5~448 15~19,21~22
    protein:V:5~448 7~10,12~13
    1422 2gv3:A

    		 22 N/A URS000080E0A9 N/A synthetic
    construct
    32630    		 16787653
    1423 2gv4:A

    		 22 N/A URS000080E31D N/A synthetic
    construct
    32630    		 17449731
    1424 2gvo:A

    		 18 N/A URS000080DD83 N/A Homo
    sapiens
    9606    		 17041234
    1425 2h0s:A
    (2.35Å)
    		 22 N/A URS000080DE3A N/A Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 16990543 Assembly1
    rna:B:23 -1,1~5,7~19
    1426 2h0s:B
    (2.35Å)
    		 123 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080DF18 RF00234 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 16990543 Assembly1
    rna:A:-2~20 23~37,39~40,58,60~67,115~117
    MG:B:301 36~37
    MG:B:302 79,81
    MG:B:303 57,59
    1427 2h0w:A
    (2.4Å)
    		 20 N/A URS000080E25B N/A Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 16990543 Assembly1
    rna:B:23 1~5,7~19
    MES:B:601 1~2
    1428 2h0w:B
    (2.4Å)
    		 123 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080DF18 RF00234 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 16990543 Assembly1
    rna:A:1~20 23~37,58,60~65,115~117
    MG:B:501 36~37
    MG:B:503 79,81
    MG:B:504 57,59
    MES:B:601 65~66
    MES:B:602 40,65,67
    1429 2h0x:A
    (2.3Å)
    		 21 N/A URS000080E25E N/A Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 16990543 Assembly1
    rna:B:23 0~5,7~19
    1430 2h0x:B
    (2.3Å)
    		 123 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080DF18 RF00234 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 16990543 Assembly1
    rna:A:0~20 23~37,39~40,58,60~65,67,115~11
    7
    MG:B:501 36~37
    MG:B:503 79,81
    MG:B:504 57,59
    1431 2h0z:A
    (2.7Å)
    		 21 N/A URS000080E125 N/A Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 16990543 Assembly1
    rna:B:23~145 0~5,7~19
    G6P:A:301 1~2
    1432 2h0z:B
    (2.7Å)
    		 123 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080DF18 RF00234 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 16990543 Assembly1
    rna:A:0~20 23~35,37,39~40,58,60~67,115~11
    7
    G6P:A:301 51,66
    MG:A:401 35~36
    MG:B:402 57,59
    MG:B:403 79,81
    1433 2h1m:A
    (2.9Å)
    		 16 N/A URS000080DE73 N/A synthetic
    construct
    32630    		 16866550 Assembly1
    rna:B:17~32 1~16
    1434 2h1m:B
    (2.9Å)
    		 16 N/A URS000080DE73 N/A synthetic
    construct
    32630    		 16866550 Assembly1
    rna:A:1~16 17~32
    1435 2hem:A

    		 24 N/A URS000080DD5C N/A synthetic
    construct
    32630    		 15939932
    1436 2hgh:B

    		 55 N/A URS000080DF63 N/A synthetic
    construct
    32630    		 16405997 Assembly1
    protein:A:104 1,4~9,18~26,40~41
    1437 2hhh:A
    (3.35Å)
    		 1505 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E226 RF00177 Thermus
    thermophilus
    HB8
    300852    		 16998488 Assembly1
    protein:B:7~240 812~814,1056~1059,1084,1086~10
    87
    protein:C:2~207 417,516,1038~1041,1043,1090~10
    92,1094~1096,1171~1174,1187~11
    88,1238
    protein:D:2~209 9,27,397~408,421~426,433~434,4
    74~475,492~493,495~496,525~531
    ,600,603~604
    protein:E:5~154 7~10,16~17,19~21,543,899~901,1
    052~1053,1055~1057,1060~1065,1
    176,1380~1381
    protein:F:1~101 657~658,694~695,720~723
    protein:G:2~156 910~911,913,917~918,1075,1221~
    1223,1272~1274,1279~1280,1328,
    1332~1333,1356~1363
    protein:H:1~138 570~571,574,581~584,624~627,63
    7,737,808~810,812,839,853~856
    protein:I:2~128 944~946,1100~1102,1110~1114,11
    30~1132,1160~1162,1169,1213~12
    15,1230~1233,1273~1274,1324~13
    25,1327~1333,1349~1356
    protein:J:3~100 941~942,950~951,953,1042~1044,
    1106~1108,1133~1136,1171,1181,
    1236~1237,1261~1262,1349~1351
    protein:K:11~129 659~661,667~670,672~676,678~67
    9,688~692,700~702,761~764,781,
    1501~1503
    protein:L:5~128 34~38,50,237,358~360,484~487,5
    02~507,510~513,521~523,535~537
    ,540,546~548,551~552,858~859,8
    88~891
    protein:M:2~126 925~931,943,947~948,1207~1213,
    1277,1279,1284,1288~1292,1303~
    1304,1310~1312
    protein:N:2~61 951~954,957~961,972~973,994~99
    5,1030~1032,1043,1097~1098,116
    8~1171,1184~1185,1198~1199,120
    1,1298~1299,1339~1341,1351~135
    2
    protein:O:2~89 563~566,640~644,651~653,712,72
    3~726,734,736,738~739,748,792
    protein:P:1~83 44~45,104,106,129~132,223~226,
    306~307,371~373,386~389,445,44
    7,457~459,591,601,608~610
    protein:Q:2~105 121~123,125,190,230~233,243,24
    9~252,260~263,271~276,548,566,
    569,744~745
    protein:R:16~88 647~648,658,702~705,718~720,81
    9~820
    protein:S:2~81 935~936,964~965,993,1201~1205,
    1207,1209,1292~1297,1300~1304
    protein:T:8~106 96~98,100~102,127~128,171~173,
    180~183,197~202,219,255~257,25
    9,318~321,328~329,1422,1435~14
    38
    protein:U:2~25 1217~1218,1224~1226,1249,1251,
    1268,1286~1287,1307~1310,1334~
    1335
    KSG:A:1523 776,778,904,1476~1477,1483~148
    4
    KSG:A:1524 677,772~773
    1438 2hns:A

    		 22 N/A URS000080DF04 N/A synthetic
    construct
    32630    		 16979185
    1439 2ho6:A
    (2.8Å)
    		 20 N/A URS000080E125 N/A Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 16990543 Assembly1
    rna:B:23~145 1~5,7~19
    MES:A:401 1~2
    1440 2ho6:B
    (2.8Å)
    		 123 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080DF18 RF00234 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 16990543 Assembly1
    rna:A:1~20 23~37,58,60~65,115~117
    MG:B:201 36~37
    MG:B:202 79,81
    MG:B:203 57,59
    MES:B:402 40,65,67
    1441 2ho7:A
    (2.9Å)
    		 21 N/A URS000080E125 N/A Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 16990543 Assembly1
    rna:B:23~145 0~5,7~19
    1442 2ho7:B
    (2.9Å)
    		 123 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080DF18 RF00234 Caldanaerobacter
    subterraneus
    subsp.
    tengcongensis
    119072    		 16990543 Assembly1
    rna:A:0~20 23~37,39~40,58,60~67,115~117
    G6P:A:401 50,65
    MG:B:201 36~37
    MG:B:202 57,59
    MG:B:204 79,81~82
    1443 2hoj:A
    (2.5Å)
    		 79 GO:0030976 (F) thiamine pyrophosphate ... URS000080E068 RF00059 Escherichia
    coli
    562    		 16962976 Assembly1
    MN:A:116 60,78
    MN:A:117 63~64
    MG:A:127 37~38
    MG:A:128 21,71,73
    TPP:A:114 19,40,42~43,57~58,72,78
    1444 2hok:A
    (3.2Å)
    		 78 GO:0030976 (F) thiamine pyrophosphate ... URS000080E068 RF00059 Escherichia
    coli
    562    		 16962976 Assembly1
    CA:A:95 60,78
    CA:A:96 63~64
    CA:A:98 40,43
    TPP:A:93 19,40,42~43,57~58,72,77~78
    1445 2hol:A
    (2.9Å)
    		 79 GO:0030976 (F) thiamine pyrophosphate ... URS000080E068 RF00059 Escherichia
    coli
    562    		 16962976 Assembly1
    BA:A:107 60,78
    BA:A:108 63~64
    BA:A:114 40,43
    MG:A:119 21,71,73
    TPP:A:105 19,40,42~43,58,72,77~78
    1446 2hom:A
    (2.89Å)
    		 80 GO:0030976 (F) thiamine pyrophosphate ... URS000080E068 RF00059 Escherichia
    coli
    562    		 16962976 Assembly1
    MG:A:98 60,78
    MG:A:103 62~63
    CA:A:100 63~64
    TPS:A:97 19~20,40,42~43,72,77~78
    1447 2hoo:A
    (3.0Å)
    		 83 GO:0030976 (F) thiamine pyrophosphate ... URS000080E068 RF00059 Escherichia
    coli
    562    		 16962976 Assembly1
    CA:A:96 59~60,78
    CA:A:97 72,76~77
    CA:A:98 80~81
    CA:A:100 20~21,44
    CA:A:101 35~36
    BFT:A:95 19~20,40,42~43,58,72,78
    1448 2hop:A
    (3.3Å)
    		 76 GO:0030976 (F) thiamine pyrophosphate ... URS000080E068 RF00059 Escherichia
    coli
    562    		 16962976 Assembly1
    218:A:92 19,42~43,73
    1449 2hua:A

    		 40 N/A URS000080E165 N/A synthetic
    construct
    32630    		 17255934
    1450 2hvy:E
    (2.3Å)
    		 61 N/A URS000080E071 N/A synthetic
    construct
    32630    		 16943774 Assembly1
    protein:A:11~337 3~5,18,41~43,45,55~61
    protein:C:3~55 19~20,33
    protein:D:4~124 21~25,30~33
    1451 2hw8:B
    (2.1Å)
    		 36 N/A URS000080E2CF N/A synthetic
    construct
    32630    		 17139090 Assembly1
    protein:A:1~228 3,7~11,13~16,28~34
    K:A:229 10,30~31
    1452 2i7e:A

    		 43 N/A URS000080DD2F N/A synthetic
    construct
    32630    		 17119098 Assembly1
    rna:B:44~86 6,8~10,21~25,37~38
    NCO:A:101 18~19,25
    1453 2i7e:B

    		 43 N/A URS000080DD2F N/A synthetic
    construct
    32630    		 17119098 Assembly1
    rna:A:1~43 49,51~53,64~68,81
    1454 2i7z:A

    		 43 N/A URS000080DD2F N/A synthetic
    construct
    32630    		 17119098 Assembly1
    rna:B:44~86 6,8,10,21~25,36~38
    MN:A:105 18~19
    1455 2i7z:B

    		 43 N/A URS000080DD2F N/A synthetic
    construct
    32630    		 17119098 Assembly1
    rna:A:1~43 49,51~53,64~68,81
    1456 2i82:E
    (2.05Å)
    		 21 N/A URS000080E189 N/A synthetic
    construct
    32630    		 17188032 Assembly1
    protein:A:3~219 1206~1213,1216~1218
    1457 2i82:F
    (2.05Å)
    		 21 N/A URS000080E189 N/A synthetic
    construct
    32630    		 17188032 Assembly2
    protein:B:306~519 1306~1313,1316~1318
    1458 2i82:G
    (2.05Å)
    		 21 N/A URS000080E189 N/A synthetic
    construct
    32630    		 17188032 Assembly3
    protein:C:605~819 1406~1413,1416~1418
    1459 2i82:H
    (2.05Å)
    		 21 N/A URS000080E189 N/A synthetic
    construct
    32630    		 17188032 Assembly4
    protein:D:904~1119 1506~1512,1516~1518
    1460 2i91:D
    (2.65Å)
    		 14 N/A URS000080E00F N/A synthetic
    construct
    32630    		 17041599 Assembly1
    rna:C:1~8 2~8,11
    protein:A:5 5~15
    1461 2i91:F
    (2.65Å)
    		 15 N/A URS000080E00F N/A synthetic
    construct
    32630    		 17041599 Assembly2
    rna:E:1~8 2~8,10~11
    protein:B:5 5~15
    1462 2ihx:B

    		 75 N/A URS000080DE1F N/A synthetic
    construct
    32630    		 17070546 Assembly1
    protein:A:15 168,196~199,216~218,220~221,22
    4
    1463 2il9:A
    (3.1Å)
    		 135 GO:0043022 (F) ribosome binding URS000080DDA6 RF00458 Plautia
    stali
    intestine
    virus
    64698    		 17124290 Assembly1
    rna:M:6003~6146 6030~6035,6040~6043,6045,6049~
    6052,6103,6105~6109,6133~6139,
    6141~6146
    1464 2il9:M
    (3.1Å)
    		 132 GO:0043022 (F) ribosome binding URS000080DDA6 RF00458 Plautia
    stali
    intestine
    virus
    64698    		 17124290 Assembly1
    rna:A:6003~6146 6030~6032,6034~6035,6039~6044,
    6049~6052,6103,6105,6107~6109,
    6133~6140,6142~6146
    1465 2ix1:B
    (2.74Å)
    		 13 N/A URS000080E227 N/A Escherichia
    coli
    BL21(DE3)
    469008    		 16957732
    16820694
    16806266
    8497196    		 Assembly1
    protein:A:1~643 1~13
    MG:A:1644 12~13
    1466 2ixy:A

    		 27 N/A URS000080E2F3 N/A Hepatitis
    B
    virus
    10407    		 16945960
    1467 2iy3:B
    (16.0Å)
    		 110 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080DE7C RF00169 Escherichia
    coli
    562    		 17086205
    1468 2iy5:T
    (3.1Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E078 RF00005 Thermus
    thermophilus
    HB8
    300852    		 16939209 Assembly1
    protein:A:15~350 19,28,42~45,56~57
    protein:B:1~780 1,11~12,24~26,33~37
    protein:A-2:15~350 69,76
    protein:B-2:1~780 10~11,67,73~75
    1469 2iz8:R
    (3.3Å)
    		 16 N/A URS000080DF8F N/A Escherichia
    phage
    MS2
    12022    		 12060685 Assembly1
    protein:A:1~129 10~12
    protein:B:1~129 6,8~9
    1470 2iz8:S
    (3.3Å)
    		 13 N/A URS000080DF8F N/A Escherichia
    phage
    MS2
    12022    		 12060685 Assembly1
    protein:C:1~129 10~12
    protein:C-6:1~129 6,8~9
    rna:S-6:4~16 4~9,12~16
    1471 2iz9:R
    (2.85Å)
    		 15 N/A URS000080DDB6 N/A Escherichia
    phage
    MS2
    12022    		 11095669 Assembly1
    protein:A:1~129 10,12
    protein:B-8:1~129 3~6
    1472 2iz9:S
    (2.85Å)
    		 15 N/A URS000080DDB6 N/A Escherichia
    phage
    MS2
    12022    		 11095669 Assembly1
    protein:C:1~129 10,12
    protein:C-6:1~129 6~9
    rna:S-6:3~17 3~10,12~17
    1473 2izm:R
    (2.7Å)
    		 13 N/A URS000080E283 N/A Escherichia
    phage
    MS2
    12022    		 12060685 Assembly1
    protein:A:1~129 10~12
    protein:B:1~129 6,8~10
    1474 2izm:S
    (2.7Å)
    		 13 N/A URS000080E283 N/A Escherichia
    phage
    MS2
    12022    		 12060685 Assembly1
    protein:C:1~129 10~12
    protein:C-6:1~129 6,8~10
    rna:S-6:4~16 4~9,11~16
    1475 2izn:R
    (2.56Å)
    		 15 N/A URS000080E328 N/A Escherichia
    phage
    MS2
    12022    		 12060685 Assembly1
    protein:A:1~129 11~12
    protein:B:1~129 5~6,8~9
    1476 2izn:S
    (2.56Å)
    		 11 N/A URS000080E328 N/A Escherichia
    phage
    MS2
    12022    		 12060685 Assembly1
    protein:C:1~129 11~12
    protein:C-6:1~129 6,8~9
    rna:S-6:5~15 5~7,12~15
    1477 2j28:8
    (9.5Å)
    		 74 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080E293 RF00169 Escherichia
    coli
    K-12
    83333    		 17086193 Assembly1
    protein:9:2~431 39,47~49,62~63
    1478 2j28:A
    (9.5Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DF7E RF00001 Escherichia
    coli
    K-12
    83333    		 17086193 Assembly1
    rna:B:1~2903 41,78~81,89~90,96~97,99~101
    protein:F:1~178 41~43,45,54~57
    protein:O:1~117 7~9,28,30,38,46~51,112~116
    protein:V:1~94 74~78,94~95,98,103
    protein:Y:1~58 82~83
    1479 2j28:B
    (9.5Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    K-12
    83333    		 17086193 Assembly1
    protein:0:1~56 15~17,516~517,1262~1264,1266,2
    015~2017,2020~2022,2045~2046,2
    054,2056,2614~2615,2815~2816,2
    884~2887
    protein:1:1~54 2285~2286,2344,2346,2370~2371,
    2399~2400,2418~2419
    protein:2:1~46 66,118,125~126,179~180,458~459
    ,464~467,682~684,686~688,752~7
    53,770~771,789,1309~1310,1368,
    1612,1619~1620
    protein:3:1~64 242,247,249~250,253,592~593,62
    9,631,649,651,834,2348~2351,23
    59,2361~2363,2382~2383,2391~23
    94,2419~2422
    protein:4:1~38 1031~1033,2465~2468,2477,2525~
    2529,2538~2539,2741~2743,2750,
    2755~2756
    protein:9:2~431 484~488,490,1284,1317,1535
    protein:C:3~269 690~692,728~730,764,773~774,77
    9~782,784,1354,1490~1491,1500~
    1501,1566~1569,1694~1695,1774,
    1788~1792,1796~1805,1812~1814,
    1816~1821,1824~1826,1828,1842~
    1845,1902~1903,1971,2073,2085~
    2086,2204,2227~2228,2239,2591,
    2593,2595,2597~2600
    protein:D:1~209 574,743~744,1654~1658,1675,199
    4,1997,2024~2025,2032,2051~205
    3,2511~2514,2571~2572,2574,257
    8~2581,2618~2621,2632~2633,263
    5~2637,2677~2682,2724,2729~273
    1,2772~2774,2783~2784,2786~278
    7,2810~2811,2820~2823
    protein:E:1~201 37~38,320~321,323~324,333,442~
    444,448~449,451~452,583,586~59
    0,599~600,607,613,615~617,620,
    658~660,671~675,798,801,1205,1
    244~1245,1248,1254~1257,2059~2
    060,2443~2445
    protein:F:1~178 2302~2306,2310~2316
    protein:G:1~176 1049,1092~1093,1112~1114,2529~
    2531,2653,2667,2745,2747~2749,
    2751,2757~2758
    protein:H:1~149 2092~2095,2198
    protein:I:1~141 1059~1061,1063~1064,1080~1081,
    1088,1098~1100
    protein:J:1~140 6~8,529,536,549,557~558,995,10
    05~1007,1012,1022,1131~1133,11
    38~1141,1143,2039,2515,2639~26
    42,2780,2898~2899
    protein:K:2~122 1665~1667,1669,1952,1995~1996,
    2547~2548,2561~2563,2566,2674~
    2676,2683~2685,2727~2728
    protein:L:1~144 244~245,250~251,587~588,597~59
    8,623,625~627,630~637,661~663,
    665~667,805,810~811,813,833,94
    3,1189~1190,1202~1203,1243~124
    4,2360,2392~2395,2404~2405,241
    4~2416
    protein:M:1~136 863,870~873,905~907,909~910,95
    4~958,1030,1116~1117,2250,2275
    ~2278,2466~2469,2483~2485,2493
    ~2496
    protein:N:1~127 1275~1279,1287,1294~1295,1453~
    1454,1649~1655,2002,2009,2689~
    2690,2700~2701,2706,2722~2723,
    2820~2823,2838~2840,2850~2851,
    2873~2874,2880~2882
    protein:O:1~117 2293~2294,2334,2376~2380
    protein:P:1~114 1754,2682~2685,2717~2719,2845~
    2849,2867,2876~2877
    protein:Q:1~117 17~19,28,445~446,513,515~516,5
    32~536,561,563~564,578,580~585
    ,812,992~998,1009~1012,1151~11
    54,1156,1198~1199,1216~1217,12
    19,1227,1248~1252,2018~2021
    protein:R:1~103 548,565,814,975,992~993,996,11
    61~1163,1187~1188,1223~1226
    protein:S:1~110 24~26,485~488,491~496,517,519~
    520,747~748,751,1262,1266,1323
    ,1325,1614~1615,2010~2014
    protein:T:1~99 64~65,135~136,139,143~144,456,
    1312,1338~1342,1392,1599,1601
    protein:U:1~102 83~86,99~101,297~298,308,310,3
    29,336~337,480~481,483
    protein:V:1~94 1039,1118
    protein:W:1~84 855~857,922~923,2256~2257,2261
    ~2263,2270~2271,2276~2281,2330
    ~2331,2334,2352,2354~2356,2365
    ~2366,2386~2387
    protein:X:1~63 61,72,76~78,95~96
    protein:Y:1~58 850~851,927~930,968~969,988,99
    9,1155,1157,1184
    protein:Z:1~70 188~189,199~201,372,380,395~39
    8,1364~1365,1808,2079~2081,209
    0~2092,2199~2200,2217,2230~223
    1,2433
    rna:A:2~118 861~864,916~919,958,2340
    MG:B:3907 945~946
    MG:B:3914 1670~1671
    MG:B:3915 1268,2006
    MG:B:3918 999,1153
    MG:B:3920 733,761
    MG:B:3923 2061,2502
    MG:B:3924 2056~2057
    MG:B:3933 2579,2611
    MG:B:3934 1269,2005
    MG:B:3936 2268~2269
    MG:B:3940 1358,1371
    MG:B:3941 948,962~963
    MG:B:3943 827,2429~2430
    MG:B:3947 810,1253
    MG:B:3950 784,2588
    MG:B:3956 526~527
    MG:B:3958 751,1614
    MG:B:3959 621~622
    MG:B:3964 450,453
    MG:B:3970 783~784,2589
    MG:B:3974 1394,1604
    MG:B:3975 1395,1603~1604
    MG:B:3978 1968,2592
    MG:B:3980 2248~2249
    MG:B:3983 2711,2714
    MG:B:3985 2448,2498~2499
    MG:B:3986 570,2448,2499
    MG:B:3987 1780,1782~1783
    MG:B:3988 730~731,761
    MG:B:3989 740,1783~1784
    MG:B:3990 826,2427~2429
    MG:B:3992 2582~2583
    MG:B:3993 1023~1026
    MG:B:3994 2573~2575
    MG:B:3995 1342,1602
    MG:B:3997 1669~1671,2550
    MG:B:4000 192,2243
    MG:B:4002 1265,2615
    MG:B:4003 1378~1379
    MG:B:4004 787,790
    MG:B:4005 195,197~198
    MG:B:4006 1314~1315,1332
    MG:B:4008 510~512
    MG:B:4010 1189~1190
    MG:B:4011 1006,1009~1010
    MG:B:4012 1271~1272,1647~1648
    1480 2j37:A
    (8.7Å)
    		 128 GO:0006617 (P) SRP-dependent cotransla...
    GO:0005786 (C) signal recognition part...    		 URS000080DE1E RF00017 Canis
    sp.
    9616    		 17086193 Assembly1
    protein:B:14~120 141~143,147~151,195~198,203~20
    4
    protein:W:8~488 184~185,192~195,207~208
    1481 2j37:Z
    (8.7Å)
    		 280 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E01F RF02540 Haloarcula
    marismortui
    2238    		 17086193 Assembly1
    protein:4:69~149 109~112,165~166,171~172
    protein:6:17~97 44~50,62~65
    protein:W:8~488 12~14,86
    1482 2ja5:P
    (3.8Å)
    		 10 N/A URS000080E343 N/A synthetic
    construct
    32630    		 17290000 Assembly1
    protein:A:2~1455 1~2,10
    protein:B:18~1224 9~10
    dna:T:18~28 3~10
    1483 2ja6:P
    (4.0Å)
    		 10 N/A URS000080E343 N/A synthetic
    construct
    32630    		 17290000 Assembly1
    protein:A:2~1455 0~1,9
    protein:B:18~1224 0,4,7~9
    dna:T:10~29 2~9
    1484 2ja7:3
    (3.8Å)
    		 10 N/A URS000080E343 N/A synthetic
    construct
    32630    		 17290000 Assembly1
    dna:2:10~28 2~10
    protein:A:2~1455 1~3,10
    protein:B:18~1224 9~10
    1485 2ja7:6
    (3.8Å)
    		 10 N/A URS000080E343 N/A synthetic
    construct
    32630    		 17290000 Assembly2
    dna:5:10~28 2~10
    protein:M:2~1455 1~3,10
    protein:N:18~1224 9~10
    1486 2ja8:P
    (3.8Å)
    		 10 N/A URS000080E07F N/A synthetic
    construct
    32630    		 17290000 Assembly1
    protein:A:2~1455 1,9
    protein:B:18~1224 4,7~9
    dna:T:10~29 0~9
    1487 2jlt:A
    (2.9Å)
    		 18 N/A URS000080DE2A N/A Escherichia
    coli
    562    		 18996893 Assembly1
    rna:B:1~16 6~13
    1488 2jlt:B
    (2.9Å)
    		 16 N/A URS000080DDA7 N/A Escherichia
    coli
    562    		 18996893 Assembly1
    rna:A:1~18 5~12
    1489 2jpp:C

    		 20 N/A URS000080E040 N/A synthetic
    construct
    32630    		 17704818 Assembly1
    protein:A:1~53 8,10~14
    protein:B:1~53 4~6,8~11,13~15
    1490 2jpp:D

    		 20 N/A URS000080E040 N/A synthetic
    construct
    32630    		 17704818 Assembly1
    protein:A:1~53 4~6,8~11,13~15
    protein:B:1~53 8,10~14
    1491 2jq7:B

    		 58 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E044 RF02541 Escherichia
    coli
    562    		 17169991 Assembly1
    protein:A:8~141 1058~1065,1070,1076~1082,1096~
    1098
    protein:C:0~17 1067,1095
    1492 2jr4:A

    		 17 N/A URS000080DEB4 N/A synthetic
    construct
    32630    		 18473483
    1493 2jrg:A

    		 17 N/A URS000080DE70 N/A synthetic
    construct
    32630    		 18473483
    1494 2jrq:A

    		 17 N/A URS000080DE70 N/A synthetic
    construct
    32630    		 N/A
    1495 2jse:A

    		 22 N/A URS000080E31A N/A synthetic
    construct
    32630    		 17929882
    1496 2jsg:A

    		 17 N/A URS000080DEB4 N/A synthetic
    construct
    32630    		 N/A
    1497 2jtp:A

    		 34 GO:0075523 (P) viral translational fra... URS000080E15C RF01835 synthetic
    construct
    32630    		 17868691
    1498 2juk:A

    		 22 N/A URS000080E13A N/A synthetic
    construct
    32630    		 18058789 Assembly1
    G0B:A:23 4~6,10~11,14~17
    1499 2jwv:A

    		 29 N/A URS000080E05E N/A synthetic
    construct
    32630    		 18160411
    1500 2jxq:A

    		 10 N/A URS000080E386 N/A synthetic
    construct
    32630    		 18399645 Assembly1
    rna:B:11~20 1~10
    << < 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.