SEQ2FUN

FURNA
Download all results in tab-seperated text for 19236 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1601 2meq:A

    		 19 N/A URS000080E1B9 N/A synthetic
    construct
    32630    		 24371282
    1602 2mer:A

    		 19 N/A URS000080E1B9 N/A synthetic
    construct
    32630    		 24371282
    1603 2mf0:G

    		 72 GO:0006109 (P) regulation of carbohydr...
    GO:0006401 (P) RNA catabolic process    		 URS000080DEDE RF00166 Pseudomonas
    fluorescens
    294    		 24828038 Assembly1
    protein:A:1~59 23,25,27~31,45,48~50,53
    protein:B:1~59 21~23,26~28,30~32,45~53
    protein:C:1~59 3~4,6,8~12,59~61,63~65,67~69
    protein:D:1~59 2~4,6~9,12,60~61,63~68
    protein:E:1~59 38~40,42~43
    protein:F:1~59 38~42
    1604 2mf1:G

    		 72 GO:0006109 (P) regulation of carbohydr...
    GO:0006401 (P) RNA catabolic process    		 URS000080DEDE RF00166 Pseudomonas
    fluorescens
    294    		 24828038 Assembly1
    protein:A:1~59 18~20,25,27~31,44~46,48~50,52~
    54
    protein:B:1~59 21~23,26~32,46~53
    protein:C:1~59 3~4,6,8~12,59~61,63~65,67~69
    protein:D:1~59 2~9,12,60~61,63~68
    protein:E:1~59 38~40,42~43,57~58,72
    protein:F:1~59 38~43,72
    1605 2mfc:B

    		 22 N/A URS000080E1AC N/A synthetic
    construct
    32630    		 24561806 Assembly1
    protein:A:1~59 3~4,6,9~12
    protein:C:1~59 2~4,6~9,12~13
    1606 2mfc:D

    		 22 N/A URS000080E1AC N/A synthetic
    construct
    32630    		 24561806 Assembly1
    protein:A:1~59 2~4,6~9,11~12
    protein:C:1~59 3~4,6,8~12
    1607 2mfd:A

    		 19 N/A URS000080DDA8 N/A Bovine
    enterovirus
    type
    1
    1248331    		 N/A
    1608 2mfe:B

    		 22 N/A URS000080E113 N/A synthetic
    construct
    32630    		 24561806 Assembly1
    protein:A:1~59 23,25,28~31
    protein:C:1~59 21~23,25~28,30~31
    1609 2mfe:D

    		 22 N/A URS000080E113 N/A synthetic
    construct
    32630    		 24561806 Assembly1
    protein:A:1~59 20~23,25~28,30~32
    protein:C:1~59 22~23,25,27~31
    1610 2mff:B

    		 21 N/A URS000080DD8A N/A synthetic
    construct
    32630    		 24561806 Assembly1
    protein:A:1~59 43,45,48~53
    protein:C:1~59 43~46,48~50,52,54
    1611 2mff:D

    		 21 N/A URS000080DD8A N/A synthetic
    construct
    32630    		 24561806 Assembly1
    protein:A:1~59 44~46,48~50,52~54
    protein:C:1~59 46,48~53
    1612 2mfg:B

    		 21 N/A URS000080E0C3 N/A synthetic
    construct
    32630    		 24561806 Assembly1
    protein:A:1~59 60~61,63~68
    protein:C:1~59 59,61,63~65,68
    1613 2mfg:D

    		 21 N/A URS000080E0C3 N/A synthetic
    construct
    32630    		 24561806 Assembly1
    protein:A:1~59 59,64~65,68
    protein:C:1~59 60~61,63~68
    1614 2mgz:C

    		 12 N/A URS000080E2FC N/A synthetic
    construct
    32630    		 25132178 Assembly1
    protein:A:96~189 1~8
    protein:B:19~123 7~12
    1615 2mhi:A

    		 53 N/A URS000080E222 N/A synthetic
    construct
    32630    		 24335084
    1616 2mi0:A

    		 22 N/A URS000080E116 N/A Neurospora
    5140    		 24325625 Assembly1
    rna:B:101~121 10~13,15
    1617 2mi0:B

    		 21 N/A URS000080DF57 N/A Neurospora
    5140    		 24325625 Assembly1
    rna:A:1~22 110~112,114~115
    1618 2mis:A

    		 26 N/A URS000080E15A N/A Neurospora
    5140    		 24364590 Assembly1
    MG:A:101 13,15
    1619 2miy:A

    		 59 GO:0008616 (P) queuosine biosynthetic ... URS000080E2D6 RF01054 Streptococcus
    pneumoniae
    1313    		 24469808 Assembly1
    PRF:A:101 7~8,19~20,50~51
    1620 2mjh:B

    		 10 N/A URS000080E11A N/A synthetic
    construct
    32630    		 24838563 Assembly1
    protein:A:195~336 16~25
    1621 2mkn:B

    		 19 N/A URS000080DE3E N/A synthetic
    construct
    32630    		 24521053 Assembly1
    protein:A:181~224 4~7,15
    rna:C:20~38 1~19
    1622 2mkn:C

    		 19 N/A URS000080E320 N/A synthetic
    construct
    32630    		 24521053 Assembly1
    protein:A:181~224 23~28
    rna:B:1~19 20~38
    1623 2mn0:A

    		 15 N/A URS00008116BD N/A Schizosaccharomyces
    pombe
    4896    		 25815904
    1624 2mnc:A

    		 16 N/A URS000080DD73 N/A synthetic
    construct
    32630    		 25250627
    1625 2mqt:A

    		 68 N/A URS000080DD93 N/A Murine
    leukemia
    virus
    11786    		 25209668
    1626 2mqv:B

    		 68 N/A URS000080DD93 N/A Murine
    leukemia
    virus
    11786    		 25209668 Assembly1
    protein:A:1~56 102~103,107~111,146~147
    1627 2ms0:B

    		 71 GO:0030533 (F) triplet codon-amino aci... URS0000715533 RF00005 Murine
    leukemia
    virus
    11786    		 25209668 Assembly1
    protein:A:1~55 6~15,49,60,68
    protein:C:101~156 12,32,34~38
    1628 2ms1:B

    		 71 GO:0030533 (F) triplet codon-amino aci... URS0000715533 RF00005 Murine
    leukemia
    virus
    11786    		 25209668 Assembly1
    protein:A:1~55 6~9,45
    1629 2mtj:A

    		 47 N/A URS000080DFCF N/A Neurospora
    crassa
    5141    		 25238589
    1630 2mtk:A

    		 47 N/A URS000080DFCF N/A Neurospora
    crassa
    5141    		 25238589
    1631 2mvs:1

    		 10 N/A URS000086850F N/A synthetic
    construct
    32630    		 25611135 Assembly1
    rna:2:11~20 1~10
    1632 2mvs:2

    		 10 N/A URS000086850F N/A synthetic
    construct
    32630    		 25611135 Assembly1
    rna:1:1~10 11~20
    1633 2mvy:1

    		 10 N/A URS000086850F N/A synthetic
    construct
    32630    		 25611135 Assembly1
    rna:2:11~20 1~10
    1634 2mvy:2

    		 10 N/A URS000086850F N/A synthetic
    construct
    32630    		 25611135 Assembly1
    rna:1:1~10 11~20
    1635 2mxj:A

    		 11 N/A URS000081169D N/A synthetic
    construct
    32630    		 25909229
    1636 2mxk:B

    		 10 N/A URS00008116B7 N/A synthetic
    construct
    32630    		 25909229 Assembly1
    rna:A:7~15 27~36
    1637 2mxl:A

    		 39 N/A URS00008116A2 N/A synthetic
    construct
    32630    		 25909229
    1638 2mxs:A

    		 27 N/A URS000080DFEC N/A synthetic
    construct
    32630    		 26661511 Assembly1
    PAR:A:101 5,9~11,17~20,22
    1639 2n0j:A

    		 27 N/A URS000080DFEC N/A synthetic
    construct
    32630    		 26661511
    20306311    		 Assembly1
    RIO:A:101 9~11,17,19~20
    1640 2n0r:A

    		 23 N/A URS000086851E N/A synthetic
    construct
    32630    		 25960310
    1641 2n1q:A

    		 155 GO:0019074 (P) viral RNA genome packaging
    GO:0043484 (P) regulation of RNA splicing    		 URS000086851D RF01381
    RF00175
    RF01380    		 Human
    immunodeficiency
    virus
    1
    11676    		 25999508
    1642 2n2o:A

    		 23 N/A URS0000868545 N/A synthetic
    construct
    32630    		 26165594
    1643 2n2p:A

    		 23 N/A URS0000868557 N/A synthetic
    construct
    32630    		 26165594
    1644 2n3o:B

    		 23 N/A URS0000A7637D N/A synthetic
    construct
    32630    		 N/A Assembly1
    protein:A:41~163 9~14
    1645 2n3q:A

    		 62 N/A URS000086855B N/A synthetic
    construct
    32630    		 26124200
    1646 2n3r:A

    		 62 N/A URS000086855B N/A Neurospora
    crassa
    5141    		 26124200
    1647 2n4l:A

    		 53 N/A URS00008FED4D N/A synthetic
    construct
    32630    		 26607354
    1648 2n6s:A

    		 36 N/A URS0000A763A4 N/A Neisseria
    meningitidis
    487    		 27369378
    1649 2n6t:A

    		 42 N/A URS0000A763A6 N/A Neisseria
    meningitidis
    487    		 27369378
    1650 2n6w:A

    		 68 N/A URS0000A7636B N/A Neisseria
    meningitidis
    487    		 27369378
    1651 2n6x:A

    		 43 N/A URS0000A76327 N/A Neisseria
    meningitidis
    487    		 27369378
    1652 2n7m:X

    		 92 GO:0017070 (F) U6 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005687 (C) U4 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...    		 URS00008FED30 RF00015 Saccharomyces
    cerevisiae
    4932    		 26655855
    1653 2n7x:A

    		 23 N/A URS0000A7638D N/A synthetic
    construct
    32630    		 27001519
    1654 2n82:A

    		 23 N/A URS0000A7638D N/A synthetic
    construct
    32630    		 27001519 Assembly1
    protein:B:105~208 19,25~36,41
    1655 2n8v:X

    		 70 N/A URS00008FED24 N/A Apis
    mellifera
    7460    		 26554019
    1656 2nbx:A

    		 108 GO:0043022 (F) ribosome binding URS0000A76323 RF00210 synthetic
    construct
    32630    		 27525590
    1657 2nby:A

    		 39 N/A URS0000A76329 N/A synthetic
    construct
    32630    		 27525590
    1658 2nbz:A

    		 40 N/A URS0000A76326 N/A synthetic
    construct
    32630    		 27525590
    1659 2nc0:A

    		 28 N/A URS0000A7634D N/A synthetic
    construct
    32630    		 27525590
    1660 2nc1:A

    		 67 GO:0043022 (F) ribosome binding URS0000A7633E N/A synthetic
    construct
    32630    		 27525590
    1661 2nci:A

    		 28 N/A URS0000A7636F N/A synthetic
    construct
    32630    		 27631837
    1662 2nok:A
    (3.0Å)
    		 24 N/A URS000080DF3C N/A synthetic
    construct
    32630    		 17131443 Assembly1
    rna:B:98~117 47~53,56,58~69
    1663 2nok:B
    (3.0Å)
    		 20 N/A URS000080E21F N/A synthetic
    construct
    32630    		 17131443 Assembly1
    rna:A:47~70 98~117
    1664 2nok:C
    (3.0Å)
    		 24 N/A URS000080DF3C N/A synthetic
    construct
    32630    		 17131443 Assembly2
    rna:D:98~117 47~53,58~69
    MN:C:120 54~55
    1665 2nok:D
    (3.0Å)
    		 20 N/A URS000080E21F N/A synthetic
    construct
    32630    		 17131443 Assembly2
    rna:C:47~70 98~105,107~117
    1666 2noq:A
    (7.3Å)
    		 190 GO:0043022 (F) ribosome binding URS000080E076 RF00458 Cricket
    paralysis
    virus
    12136    		 17115051 Assembly1
    rna:B:500~545 160~162,191~193
    rna:C:1050~1062 189~190
    rna:D:1194~1208 188~190
    protein:F:75~224 86~90
    protein:G:4~216 10~15,61
    1667 2noq:B
    (7.3Å)
    		 46 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E36E RF00177 Saccharomyces
    cerevisiae
    4932    		 17115051 Assembly1
    rna:A:4~193 505,518,528~531,533~535
    1668 2noq:C
    (7.3Å)
    		 13 N/A URS000080E17D N/A Saccharomyces
    cerevisiae
    4932    		 17115051 Assembly1
    rna:D:1194~1208 1050~1062
    1669 2noq:D
    (7.3Å)
    		 15 N/A URS000080E239 N/A Saccharomyces
    cerevisiae
    4932    		 17115051 Assembly1
    rna:A:4~193 1196~1197
    rna:C:1050~1062 1194~1200,1202~1208
    1670 2noq:E
    (7.3Å)
    		 53 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E06B RF02543 Saccharomyces
    cerevisiae
    4932    		 17115051 Assembly1
    protein:G:4~216 2153~2157,2169~2177,2183~2185
    1671 2npy:A
    (2.65Å)
    		 13 N/A URS000080DE13 N/A synthetic
    construct
    32630    		 17582172 Assembly1
    rna:B:2~13 2~5,7,9~13
    rna:D:31~49 4,6
    1672 2npy:B
    (2.65Å)
    		 12 N/A URS000080DF3F N/A synthetic
    construct
    32630    		 17582172 Assembly1
    rna:A:1~13 2~9,11~13
    rna:C:15~31 10~12
    rna:D:31~49 11~13
    1673 2npy:C
    (2.65Å)
    		 17 N/A URS000080DEF8 N/A synthetic
    construct
    32630    		 17582172 Assembly1
    rna:A:1~13 25~26
    rna:B:2~13 23~25
    rna:D:31~49 15~24,26~31
    NCO:C:32 20~21
    1674 2npy:D
    (2.65Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 17582172 Assembly1
    rna:A:1~13 36~38,41~42
    rna:B:2~13 42~43
    rna:C:15~31 31~36,38,40~49
    NCO:C:32 40~41
    1675 2npz:A
    (3.35Å)
    		 13 N/A URS000080E09E N/A synthetic
    construct
    32630    		 17582172 Assembly1
    rna:B:2~13 2~5,7,9~13
    rna:C:15~31 6~7
    rna:D:31~49 3~4,6
    1676 2npz:B
    (3.35Å)
    		 12 N/A URS000080DF3F N/A synthetic
    construct
    32630    		 17582172 Assembly1
    rna:A:1~13 2~6,8~9,11~13
    rna:C:15~31 10~11
    rna:D:31~49 11~13
    1677 2npz:C
    (3.35Å)
    		 17 N/A URS000080DEF8 N/A synthetic
    construct
    32630    		 17582172 Assembly1
    rna:A:1~13 25~26
    rna:B:2~13 24~25
    rna:D:31~49 15~23,26~31
    NCO:C:4 20~21
    1678 2npz:D
    (3.35Å)
    		 19 N/A URS000080E34C N/A synthetic
    construct
    32630    		 17582172 Assembly1
    rna:A:1~13 37~38,41~42
    rna:B:2~13 42~43
    rna:C:15~31 31~36,41,43~49
    NCO:C:4 40~41
    1679 2nqp:F
    (3.5Å)
    		 71 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00004EADCF RF00005 Escherichia
    coli
    562    		 17466622 Assembly1
    protein:C:7~270 16,19~20,56
    protein:D:8~270 16,22~25,40
    K:F:77 60~62
    K:F:78 48~49,59~60
    K:F:79 54~55,58
    K:F:80 20,20A
    K:F:81 20,20A,48,59~60
    1680 2nr0:E
    (3.9Å)
    		 81 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00004630EA RF00005 Escherichia
    coli
    562    		 17466622 Assembly1
    protein:A:7~270 16,23,25,31,39~40
    protein:B:7~270 19,56
    1681 2nr0:F
    (3.9Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00004630EA RF00005 Escherichia
    coli
    562    		 17466622 Assembly1
    protein:A:7~270 19~20,56
    protein:B:7~270 16~17,23~25,33~34,36~41
    1682 2nr0:G
    (3.9Å)
    		 67 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00004630EA RF00005 Escherichia
    coli
    562    		 17466622 Assembly2
    protein:C:7~270 16~17,23~25,30,32,35~36,39~42
    protein:D:7~270 16,19~20,56
    1683 2nr0:H
    (3.9Å)
    		 65 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00004630EA RF00005 Escherichia
    coli
    562    		 17466622 Assembly2
    protein:C:7~270 16,19~20,56
    protein:D:7~270 16,23~25,31,39~40
    1684 2nre:F
    (4.0Å)
    		 56 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00004630EA RF00005 Escherichia
    coli
    562    		 17466622 Assembly1
    protein:A:7~270 16,23,25
    K:F:78 17~18
    1685 2nue:C
    (2.9Å)
    		 46 N/A URS000080E013 N/A synthetic
    construct
    32630    		 18047582 Assembly1
    protein:A:2~221 6~8,17~18,31~34,42~44
    protein:B:1~220 29~30
    1686 2nuf:C
    (2.5Å)
    		 28 N/A URS000080DD89 N/A synthetic
    construct
    32630    		 18047582 Assembly1
    rna:D:1~28 1,27~28
    protein:A:2~220 7~8,11,18~24
    protein:B:2~220 1~6,24~26
    MG:C:202 1~2
    1687 2nuf:D
    (2.5Å)
    		 28 N/A URS000080DD89 N/A synthetic
    construct
    32630    		 18047582 Assembly1
    rna:C:1~28 1,27~28
    protein:A:2~220 1~6,23~26
    protein:B:2~220 7~8,11,18~23
    MG:D:206 1~2
    1688 2nug:C
    (1.7Å)
    		 11 N/A URS000080DF34 N/A synthetic
    construct
    32630    		 18047582 Assembly1
    rna:E:17~27 2~11
    rna:D:2~12 11~12
    protein:A:3~218 2~7
    protein:B:3~220 7~12
    1689 2nug:D
    (1.7Å)
    		 11 N/A URS000080DF34 N/A synthetic
    construct
    32630    		 18047582 Assembly1
    rna:C:2~12 11~12
    rna:F:17~27 2~11
    protein:A:3~218 8~12
    protein:B:3~220 2~7
    1690 2nug:E
    (1.7Å)
    		 11 N/A URS000080DDD6 N/A synthetic
    construct
    32630    		 18047582 Assembly1
    rna:C:2~12 17~26
    protein:A:3~218 17,23~25
    protein:B:3~220 17~22
    1691 2nug:F
    (1.7Å)
    		 11 N/A URS000080DDD6 N/A synthetic
    construct
    32630    		 18047582 Assembly1
    rna:D:2~12 17~26
    protein:A:3~218 17~21
    protein:B:3~220 17,23~25
    1692 2nvq:R
    (2.9Å)
    		 10 N/A URS000080E03D N/A synthetic
    construct
    32630    		 17129781 Assembly1
    dna:T:1~28 2~10
    protein:A:3~1445 1,10
    protein:B:20~1224 5,9~10
    1693 2nvt:R
    (3.36Å)
    		 10 N/A URS000080DEA1 N/A synthetic
    construct
    32630    		 17129781 Assembly1
    dna:T:8~28 2~10
    protein:A:3~1451 1,10
    protein:B:20~1224 1~2,6,9~10
    1694 2nvx:R
    (3.6Å)
    		 10 N/A URS000080E03D N/A synthetic
    construct
    32630    		 17129781 Assembly1
    dna:T:1~28 3~10
    protein:A:3~1445 1,3,10
    protein:B:20~1222 2,6~10
    1695 2nvz:R
    (4.3Å)
    		 10 N/A URS000080E03D N/A synthetic
    construct
    32630    		 17129781 Assembly1
    dna:T:1~28 3~10
    protein:A:2~1445 1,10
    protein:B:20~1223 2,8~10
    1696 2nz4:E
    (2.498Å)
    		 13 N/A URS000080E2F9 N/A Bacillus
    anthracis
    1392    		 17196404 Assembly1
    rna:P:12~141 0~5,7~11
    GLP:P:5001 1~2
    1697 2nz4:F
    (2.498Å)
    		 13 N/A URS000080E2F9 N/A Bacillus
    anthracis
    1392    		 17196404 Assembly2
    rna:Q:12~141 0~5,7~11
    GLP:F:5002 1~2
    MG:F:9011 0,2
    1698 2nz4:G
    (2.498Å)
    		 13 N/A URS000080E2F9 N/A Bacillus
    anthracis
    1392    		 17196404 Assembly3
    rna:R:12~141 0~5,7~11
    GLP:G:5003 1~2
    1699 2nz4:H
    (2.498Å)
    		 13 N/A URS000080E2F9 N/A Bacillus
    anthracis
    1392    		 17196404 Assembly4
    rna:S:12~141 0~5,7~11
    GLP:H:5004 1~2
    1700 2nz4:P
    (2.498Å)
    		 141 GO:0003824 (F) catalytic activity
    GO:0010468 (P) regulation of gene expr...    		 URS000080E011 RF00234 Bacillus
    anthracis
    1392    		 17196404 Assembly1
    rna:E:-1~11 12,23~30,32~33,50,52~59,111~11
    2
    protein:A:7~96 14,16,17B,17C,17D,17E,17F,17G,
    17H,17K,17L
    GLP:P:5001 42~43,57
    MG:P:9010 28~30
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.