SEQ2FUN

FURNA
Download all results in tab-seperated text for 22390 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    1801 2p89:B

    		 14 N/A URS000080DD4B N/A Homo
    sapiens
    9606    		 17412831
    100    		 Assembly1
    rna:A:1~34 35~40,42~48
    1802 2pcv:A

    		 35 N/A URS000080E11B N/A Homo
    sapiens
    9606    		 17466623
    M161_0.6

    1311
    1803 2pcw:A

    		 35 N/A URS000080E11B N/A Homo
    sapiens
    9606    		 17466623
    M161_0.6

    1311    		 Assembly1
    rna:B:36~49 5,7~11,24,26~30
    1804 2pcw:B

    		 14 N/A URS000080E1DC N/A Homo
    sapiens
    9606    		 17466623 Assembly1
    rna:A:1~35 36~40,43~48
    1805 2pjp:B
    (2.3Å)
    		 23 N/A URS000080DE74 N/A synthetic
    construct
    32630    		 17537456
    17565186    		 Assembly1
    protein:A:487~607 17~24
    MG:B:150 15~16
    1806 2ply:C
    (2.6Å)
    		 23 N/A URS000080E0A3 N/A synthetic
    construct
    32630    		 17537456
    17565186    		 Assembly1
    protein:A:392~632 14~17,25~27
    1807 2ply:E
    (2.6Å)
    		 23 N/A URS000080E0A3 N/A synthetic
    construct
    32630    		 17537456
    17565186    		 Assembly2
    protein:B:436~633 14~16,26
    MG:E:144 13~14
    1808 2pn3:A
    (2.9Å)
    		 24 N/A URS000080DF3C N/A synthetic
    construct
    32630    		 18391410 Assembly1
    rna:B:98~117 47~53,56,58~70
    MG:A:2 60~61
    1809 2pn3:B
    (2.9Å)
    		 20 N/A URS000080E21F N/A synthetic
    construct
    32630    		 18391410 Assembly1
    rna:A:47~70 98~117
    1810 2pn4:A
    (2.32Å)
    		 24 N/A URS000080DF3C N/A synthetic
    construct
    32630    		 18391410 Assembly1
    rna:B:98~117 47~53,56,58~70
    SR:A:1002 60~61
    1811 2pn4:B
    (2.32Å)
    		 20 N/A URS000080E21F N/A synthetic
    construct
    32630    		 18391410 Assembly1
    rna:A:47~70 98~117
    1812 2pn4:C
    (2.32Å)
    		 24 N/A URS000080DF3C N/A synthetic
    construct
    32630    		 18391410 Assembly2
    rna:D:98~117 47~53,56,58~70
    SR:C:1003 60~61
    1813 2pn4:D
    (2.32Å)
    		 20 N/A URS000080E21F N/A synthetic
    construct
    32630    		 18391410 Assembly2
    rna:C:47~70 98~117
    1814 2pn9:A

    		 16 N/A URS000080DDA7 N/A synthetic
    construct
    32630    		 17768146 Assembly1
    rna:B:17~32 6~12
    1815 2pn9:B

    		 16 N/A URS000080E0B9 N/A synthetic
    construct
    32630    		 17768146 Assembly1
    rna:A:1~16 22~27
    1816 2ppb:H
    (3.0Å)
    		 16 N/A URS000080DE62 N/A synthetic
    construct
    32630    		 17581591 Assembly1
    dna:G:1~23 8~16
    protein:C:1~1119 1,4~7,11~16
    protein:D:2~1505 2,10,16
    1817 2ppb:Y
    (3.0Å)
    		 16 N/A URS000080DE62 N/A synthetic
    construct
    32630    		 17581591 Assembly2
    dna:X:1~23 8~16
    protein:M:1~1119 1~2,5,7,11~16
    protein:N:2~1505 2,4,9~10,16
    1818 2pwt:A
    (1.8Å)
    		 21 N/A URS000080DF2F N/A synthetic
    construct
    32630    		 17722211 Assembly1
    rna:B:24~44 2~15,18~22
    LHA:A:51 14~21
    LHA:B:50 5~7
    1819 2pwt:B
    (1.8Å)
    		 21 N/A URS000080DF2F N/A synthetic
    construct
    32630    		 17722211 Assembly1
    rna:A:2~22 24~37,40~44
    LHA:A:51 27~29
    LHA:B:50 35~42
    LHA:B:55 34~35
    1820 2pxb:B
    (2.5Å)
    		 49 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080E210 RF00169 synthetic
    construct
    32630    		 17637337 Assembly1
    protein:A:1~82 139~141,148~151,163~164
    NCO:B:201 137,170~171
    NCO:B:202 144~145,163
    NCO:B:203 148~151
    NCO:B:206 146,161~162
    NCO:B:207 131~132,171
    NCO:B:208 131~132,175
    1821 2pxd:B
    (2.0Å)
    		 49 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080E1B6 RF00169 synthetic
    construct
    32630    		 17637337 Assembly1
    protein:A:1~82 140~141,148~151,163~164
    NCO:B:201 137,170
    NCO:B:202 144~146,163
    NCO:B:203 148~151
    NCO:B:206 146~147,162
    NCO:B:207 131~133,175
    1822 2pxe:B
    (2.0Å)
    		 49 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080E2BA RF00169 synthetic
    construct
    32630    		 17637337 Assembly1
    protein:A:1~82 139~141,148~151,163~164
    NCO:B:201 137,170~171
    NCO:B:202 144~146,163
    NCO:B:203 148~151
    NCO:B:206 147,161~162
    NCO:B:207 131,133
    1823 2pxf:B
    (2.0Å)
    		 49 N/A URS000080DDE3 N/A synthetic
    construct
    32630    		 17637337 Assembly1
    protein:A:1~82 139~141,148~151,163~164
    NCO:B:201 137,170
    NCO:B:202 144~146,163
    NCO:B:203 148~151
    NCO:B:206 146~147,161~162
    NCO:B:207 131~133
    1824 2pxk:B
    (2.5Å)
    		 49 N/A URS000080DD7F N/A synthetic
    construct
    32630    		 17637337 Assembly1
    protein:A:1~82 139~141,148~151,163~164
    NCO:B:201 170~171
    NCO:B:202 144~145,163
    NCO:B:203 148~150
    NCO:B:206 146~147,162
    NCO:B:207 132~133,176
    1825 2pxl:B
    (2.5Å)
    		 47 N/A URS000080DE4F N/A synthetic
    construct
    32630    		 17637337 Assembly1
    protein:A:1~82 139~141,148~151,163~164
    NCO:B:201 137,170~171
    NCO:B:202 144~145,163
    NCO:B:203 148~151
    NCO:B:206 147,161~162
    NCO:B:207 132~133,175
    1826 2pxp:B
    (2.5Å)
    		 49 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080DFAC RF00169 synthetic
    construct
    32630    		 17637337 Assembly1
    protein:A:1~82 139~141,148~151,163~164
    NCO:B:201 170~171
    NCO:B:202 144~146,163
    NCO:B:203 148~151
    NCO:B:206 146,161~162
    NCO:B:207 131~132
    1827 2pxq:B
    (2.5Å)
    		 49 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080E073 RF00169 synthetic
    construct
    32630    		 17637337 Assembly1
    protein:A:1~82 139~141,148~151,163~164
    NCO:B:201 137,170~171
    NCO:B:202 144~146,163
    NCO:B:203 148~151
    NCO:B:206 146~147,161~162
    NCO:B:207 131,175~176
    1828 2pxt:B
    (2.5Å)
    		 49 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080E32F RF00169 synthetic
    construct
    32630    		 17637337 Assembly1
    protein:A:1~82 139~141,148~151,163~164
    NCO:B:201 137,170~171
    NCO:B:202 144~145,163
    NCO:B:203 148~150
    NCO:B:206 146~147,162
    NCO:B:207 175~176
    1829 2pxu:B
    (2.5Å)
    		 49 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080E2C9 RF00169 synthetic
    construct
    32630    		 17637337 Assembly1
    protein:A:1~82 139~141,148~151,163~164
    NCO:B:201 137,170~171
    NCO:B:202 144~145,163~164
    NCO:B:203 148~151
    NCO:B:206 146~147,162
    NCO:B:208 131~132,170~171
    1830 2pxv:B
    (2.0Å)
    		 49 N/A URS000080E262 N/A Escherichia
    coli
    562    		 17637337 Assembly1
    protein:A:1~82 139~140,148~151,163~164
    NCO:B:201 137,170
    NCO:B:202 142,144~145,163
    NCO:B:203 148~151
    NCO:B:206 146~147,161~162
    NCO:B:207 133~135
    NCO:B:208 130~132,175
    1831 2py9:E
    (2.56Å)
    		 12 N/A URS000080DF3A N/A synthetic
    construct
    32630    		 17526645 Assembly1
    protein:B:13~81 7,9~12
    1832 2py9:F
    (2.56Å)
    		 12 N/A URS000080DF3A N/A synthetic
    construct
    32630    		 17526645 Assembly2
    protein:C:13~81 3~8
    1833 2q1o:A
    (1.1Å)
    		 12 N/A URS000080E2B9 N/A synthetic
    construct
    32630    		 17881374 Assembly1
    rna:B:101~112 101~112
    1834 2q1o:B
    (1.1Å)
    		 12 N/A URS000080E2B9 N/A synthetic
    construct
    32630    		 17881374 Assembly1
    rna:A:101~112 101~112
    1835 2q1o:C
    (1.1Å)
    		 12 N/A URS000080E2B9 N/A synthetic
    construct
    32630    		 17881374 Assembly2
    rna:D:101~112 101~112
    1836 2q1o:D
    (1.1Å)
    		 12 N/A URS000080E2B9 N/A synthetic
    construct
    32630    		 17881374 Assembly2
    rna:C:101~112 101~112
    1837 2q1r:A
    (1.12Å)
    		 12 N/A URS000080E0B7 N/A synthetic
    construct
    32630    		 17881374 Assembly1
    rna:A-2:1001~1012 1001~1012
    1838 2qa4:0
    (3.0Å)
    		 2753 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540 Haloarcula
    marismortui
    2238    		 17599351 Assembly1
    rna:9:1~122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    protein:A:1~237 782~784,820,857,866~867,870~87
    5,877,1652~1654,1844~1848,1850
    ~1853,1855~1856,1860~1863,1868
    ~1870,1872~1877,1879~1884,1898
    ~1900,1939~1944,2114,2123,2125
    ,2271~2273,2630,2632~2634
    protein:B:1~337 835~836,1234,1732~1736,1751,17
    53~1754,2035~2036,2038~2039,20
    65~2066,2090~2094,2545~2549,25
    80~2582,2606~2607,2609,2613~26
    16,2653~2657,2669~2674,2678~26
    79,2681~2682,2707~2708,2714~27
    19,2756~2757,2759~2760,2765~27
    68,2806~2810,2815,2818~2822,28
    37~2840,2842~2843,2846~2848,28
    51~2852,2861~2862,2897~2898
    protein:C:1~246 30,34~35,326~330,338~339,447~4
    52,454~455,457~458,474~476,641
    ,643,645~647,656~657,663~664,6
    70~672,674~678,749~751,762~766
    ,890,894,1305~1310,1343~1344,1
    349,1352,1359~1362,2100~2101
    protein:D:10~174 2333,2336~2338,2345~2351
    protein:E:1~172 1140,2561,2565~2567,2690,2694~
    2695,2704~2705,2778~2784,2792~
    2793,2796
    protein:F:1~119 243~246,262~264
    protein:G:7~132 1148~1151,1160~1161,1186~1188,
    1210~1212,1216
    protein:H:1~171 964~968,1002~1005,1007~1008,10
    53~1056,1058,1134~1135,2282~22
    83,2309~2311,2494~2495,2501~25
    04,2518~2522,2531
    protein:I:5~130 1162~1164,1167~1169,1180,1183~
    1185,1192
    protein:J:4~145 533,615,1102~1104,1109,1117~11
    19,1235~1236,1241~1244,1246~12
    47,2066,2081~2082,2676~2677,27
    93,2803,2815
    protein:K:1~132 1742~1745,1747,1992~1994,2036~
    2037,2546,2582~2583,2596~2598,
    2601,2686~2687,2711~2713,2720~
    2721,2763~2764
    protein:L:1~150 164~166,196~197,215~216,220~22
    3,417,623~624,644~645,688,692~
    693,697~700,745,757~758,762,89
    7~905,918~920,924~927,1294~129
    5,1297~1300,1353~1354,2430~243
    2,2441~2443,2452~2453,2465~246
    7
    protein:M:1~194 133~137,145,154~158,160~161,17
    0~171,175,182~183,188~190,192,
    204,206,227,240,242~243,251,25
    9~261,263~265,376,378~381,389~
    394,398~403,417,431~433,770~77
    1,1467,1469~1471,1864,2121~212
    2,2132,2243~2245,2262~2264,227
    3~2275
    protein:N:1~186 1010,2353,2368~2369,2413~2417
    protein:O:1~115 654~657,659~660,700~701,708~71
    1,719,721~722,745~746,935~936,
    1276~1278
    protein:P:1~143 793,800~801,815~816,1387~1388,
    1396~1399,1500~1502,1540~1541,
    1548~1549,1565~1566,1593~1598,
    1704~1708,1715~1720,1760~1762,
    1784~1790,1793~1795,1798,1800~
    1802,1813,1817,2735,2737~2739
    protein:Q:1~95 948~953,1010,1018~1019,2295~22
    99,2304,2306~2307,2353,2363~23
    67,2370,2386~2390,2392~2395,24
    03~2404,2424
    protein:R:1~150 11~12,19~22,492,499~501,523~52
    6,840~841,843~844,1369~1373,14
    28,1689~1690,2048~2055,2088,26
    58~2660,2831,2841~2842
    protein:S:1~81 67~68,1418,1444~1448,1507~1508
    ,1673~1676
    protein:T:1~119 30~31,79~82,87,97,99~101,303,3
    06~309,315~318,332~336,342~345
    ,447~448,483~484,486~489
    protein:U:4~56 1810,2721,2754~2755,2864~2866,
    2890
    protein:V:1~65 55~58,68~69,71~74,91~94,96
    protein:W:1~154 567~568,588,943~946,1024~1025,
    1067~1068,1084,1086~1087,1094~
    1099,1262~1264,1285~1288
    protein:X:7~88 1380~1386,1399~1401,1729~1731,
    2043~2044,2727,2743~2744,2834,
    2856,2895~2896,2904~2905
    protein:Y:95~236 320,521~522,537~541,551~554,59
    4~595,617,620~623,637~638,905~
    908,1071~1074,1089~1090,1266~1
    269,1293,1311~1313,1315~1317,1
    327~1331,1333~1335,1343,1356,2
    059
    protein:Z:10~82 796~797,818,820,1602,1604,1652
    ,1654,1771,1773,1829~1830,1885
    ~1887,2018
    protein:1:1~56 51,111~113,119~121,148~149,179
    ,470~473,772~774,776~779,845,8
    63~864,881~882,890~892,894,141
    4~1415,1473,1687~1688,1694~169
    5,1836~1837
    protein:2:1~49 53~54,60~61,86~88,120~123,462,
    466,514,1414~1415,1417~1419,14
    39,1486,1677,1684~1685,1691
    protein:3:1~92 169~170,218~219,389~390,396,73
    5,1922~1925,2317,2319~2321,237
    8~2379,2381~2382,2407~2409,242
    7~2428,2432~2436,2451,2457~246
    2,2468
    MG:0:1 2483,2533~2534
    MG:0:2924 627,2483,2534
    MG:0:2925 876~877,2624
    MG:0:2926 456,459
    MG:0:2927 1836,1838~1839
    MG:0:2928 821~822,854
    MG:0:2929 832,1839~1840
    MG:0:2930 919,2464~2465
    MG:0:2931 2611~2612
    MG:0:2932 836,2615
    MG:0:2933 824,854
    MG:0:2935 877,2623
    MG:0:2936 2102,2537
    MG:0:2937 844,1689
    MG:0:2938 1504,1678~1679
    MG:0:2940 1291~1292
    MG:0:2942 1828,1830
    MG:0:2944 2097,2540
    MG:0:2945 2617~2618
    MG:0:2946 1380~1381
    MG:0:2947 1120~1121
    MG:0:2948 2608~2610
    MG:0:2949 240,269
    MG:0:2950 1448,1677
    MG:0:2951 1503,1679
    MG:0:2952 1748~1749
    MG:0:2953 777~778
    MG:0:2955 1747~1749,2585
    MG:0:2956 2302~2303
    MG:0:2963 196,227~228
    MG:0:2965 816~817
    MG:0:2966 2048,2088~2089
    MG:0:2969 1098~1099
    MG:0:2970 2746,2749~2750
    MG:0:2971 2422~2423
    MG:0:2973 641,1355
    MG:0:2974 1125~1126
    MG:0:2975 470~471
    MG:0:2978 1883,2012
    MG:0:2980 2618,2643
    MG:0:2982 1369,2650
    MG:0:2983 1489,1491
    MG:0:2986 1845~1846,1884
    MG:0:2987 2568~2569
    MG:0:2988 219,221
    MG:0:2991 1286~1287
    MG:0:2994 880,883
    MG:0:2995 164~165,168
    MG:0:2996 1684,1724
    MG:0:2997 1420~1421,1438
    MG:0:3002 532~533
    MG:0:3003 682~683
    MG:0:3004 2540,2611
    MG:0:3005 516~517
    MG:0:3010 1096,1257~1258
    MG:0:3011 1848~1849
    MG:0:3012 863~864
    MG:0:3016 2281~2282
    MG:0:3021 1106~1107
    MG:0:3023 903,1357
    MG:0:3030 1840~1841,2022
    MG:A:241 1872~1873
    K:0:3031 2102,2482,2535~2536
    K:M:196 169,172
    NA:0:3032 1068~1069,1072,1087
    NA:0:3033 1119~1121
    NA:0:3034 643~644,904,1354
    NA:0:3035 629~631,2070
    NA:0:3036 2092~2094,2649
    NA:0:3037 40~41,442
    NA:0:3038 1394,1432,1724
    NA:0:3039 2577~2579
    NA:0:3040 2493,2523~2525
    NA:0:3041 2398~2399
    NA:0:3042 2541,2607~2608
    NA:0:3043 164~167
    NA:0:3044 896~897
    NA:0:3045 1416~1417
    NA:0:3046 2543~2544
    NA:0:3047 2465~2466
    NA:0:3048 2543,2611,2615
    NA:0:3049 836~837,1737
    NA:0:3050 2287~2288
    NA:0:3051 885~886,2112~2113,2475
    NA:0:3052 130,145~146
    NA:0:3053 776~777,779
    NA:0:3054 1971,2009~2010,2012
    NA:0:3055 821,854,1831~1832
    NA:0:3056 56,59~62
    NA:0:3057 66,107~108
    NA:0:3058 140~142
    NA:0:3059 170~171,218~219,221
    NA:0:3060 386~387,402~403
    NA:0:3061 1894,1897~1898,1939
    NA:0:3062 1894~1897
    NA:0:3063 621~623
    NA:0:3064 1706~1707
    NA:0:3066 2540,2611,2645
    NA:0:3067 1740~1741,2033
    NA:0:3068 681~683
    NA:0:3069 891~893
    NA:0:3070 308,335,342
    NA:0:3071 2663,2811~2812,2816~2817
    NA:0:3072 1043~1045
    NA:0:3073 623~624,901
    NA:0:3074 1040,1296
    NA:0:3075 768,2111~2112
    NA:0:3076 1243~1244
    NA:0:3077 920,2278~2279,2463,2467
    NA:0:3078 941~942,1023~1024
    NA:0:3079 2094,2610~2612
    NA:0:3080 898,922~923,2109
    NA:0:3081 454,478
    NA:0:3083 167,2110~2111,2277
    NA:0:3086 390~392,398~399
    NA:0:3087 544,611~612
    NA:0:3088 464,475
    NA:0:3089 798,814~815
    NA:0:3090 391~392,395,398
    NA:0:3091 1831~1832
    NA:0:3092 2528~2529
    NA:0:3093 919,922
    NA:0:3094 1576~1577,1618~1619
    NA:0:3095 196,415~416
    NA:0:3096 868~869,886~887
    NA:0:3097 633,2096,2535,2538~2539
    NA:0:3098 1293,1295
    NA:0:3099 762,903
    NA:0:3100 831~833,849~850
    NA:0:3101 2585~2587,2592
    NA:0:3102 2772~2773
    NA:0:3104 1077,1079
    NA:H:172 1133~1134
    NA:R:155 2659~2660
    CL:0:3106 202,230
    CL:0:3111 594~595
    1839 2qa4:9
    (3.0Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 17599351 Assembly1
    rna:0:10~2914 80~83,87,91,100~101,103~105
    protein:D:10~174 17,29~30,40~42,44~45,53,56~59
    protein:N:1~186 4~8,10~11,13~15,26~29,34~37,46
    ~52,68~69,114,117~119
    protein:Q:1~95 8~9,11,69
    protein:W:1~154 84~88,97~99
    MG:9:123 21,56~57
    NA:9:126 21,57~59
    1840 2qbz:X
    (2.6Å)
    		 153 GO:0010468 (P) regulation of gene expr...
    GO:0032026 (P) response to magnesium ion    		 URS000080E29A RF00380 Bacillus
    subtilis
    1423    		 17803910 Assembly1
    MG:X:201 100,102~104
    MG:X:202 23,100
    MG:X:203 24~25
    MG:X:206 80~81
    K:X:301 27~29,155,157~158
    K:X:302 66~67,74~75,106~107
    K:X:303 25,72~73,161~162
    K:X:304 23~24
    1841 2qek:A
    (1.8Å)
    		 23 N/A URS000080E167 N/A synthetic
    construct
    32630    		 18435520 Assembly1
    rna:B:1~23 1~8,10~23
    K:A:9002 3~4
    K:A:9003 6~8
    1842 2qek:B
    (1.8Å)
    		 23 N/A URS000080E167 N/A synthetic
    construct
    32630    		 18435520 Assembly1
    rna:A:1~23 1~7,10~23
    K:B:9001 3~4
    1843 2qex:0
    (2.9Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E276 RF02540 Haloarcula
    marismortui
    2238    		 17664317 Assembly1
    rna:9:3001~3122 955~958,1011,1013~1015,1084,10
    99,1124,1130~1132
    protein:A:1~237 782~784,820,857,866~867,870~87
    5,877,886,1652~1654,1844~1848,
    1850~1853,1855~1856,1860~1863,
    1868~1870,1872~1884,1898~1900,
    1939~1944,2114,2123,2125,2248~
    2250,2270,2272~2273,2630,2633~
    2634
    protein:B:1~337 835~836,1234,1732~1736,1751,17
    53~1754,2034~2036,2038~2039,20
    65~2066,2091~2094,2545~2549,25
    80~2582,2606~2607,2609~2610,26
    13~2616,2653~2658,2669~2674,26
    78,2681~2682,2714~2719,2756~27
    57,2759~2760,2765~2768,2806~28
    10,2818~2822,2828,2837~2840,28
    42~2843,2846~2848,2851~2852,28
    61~2862,2897~2898
    protein:C:1~246 34~35,326~330,339,447~452,455,
    457~459,474~475,477,641~642,64
    4~647,656~657,663~664,671~672,
    674~678,749~751,762,764~766,89
    0,894,1305~1311,1343~1344,1351
    ~1352,1359~1363,2100~2101
    protein:D:10~174 2333,2337~2338,2345~2349
    protein:E:1~172 1140,2561,2565~2567,2690,2694~
    2695,2704~2705,2778,2780~2784,
    2792~2794,2796
    protein:F:1~119 243~246,261~264
    protein:G:12~73 1150~1151,1210~1211
    protein:H:1~171 964~969,1002~1008,1053~1056,11
    34~1135,2282~2283,2309~2312,24
    94~2495,2501~2504,2519~2522,25
    31
    protein:J:4~145 533,615,1102~1104,1109,1117~11
    19,1235~1236,1241~1244,1247,20
    65,2081~2082,2676~2677,2803,28
    14~2815
    protein:K:1~132 1742~1745,1747,1992~1994,2036~
    2037,2546,2582~2583,2596~2598,
    2601,2686~2687,2708~2709,2711~
    2712,2720~2721,2762~2764
    protein:L:1~150 165~166,196,215~216,220~223,41
    7,623~625,644~645,688,692~694,
    697~701,745,757~759,762,897~90
    5,918~920,924~927,1041~1042,12
    94~1300,1302,1353~1354,2430~24
    32,2441~2444,2452~2454,2465~24
    66
    protein:M:1~194 133~136,145,154~161,170~171,17
    5,181~183,188~191,193,195,206,
    227,241~244,251,259,263~266,37
    8~381,389,391~394,398~404,417,
    431~433,770~771,1467,1469~1472
    ,1864,2121~2123,2132,2243~2245
    ,2262~2264,2266,2273~2275
    protein:N:1~186 962,1010,2353,2368,2413~2417
    protein:O:1~115 654~657,659~660,700~701,708~71
    1,719,721~722,745~746,935~936,
    1276~1278
    protein:P:1~143 792~793,800~801,815~816,1387~1
    388,1396~1399,1500~1502,1541,1
    548~1549,1565~1566,1593~1598,1
    704~1708,1715~1720,1760~1762,1
    784~1790,1793~1795,1798,1800~1
    802,1813,1817,2735~2739
    protein:Q:1~95 948~953,1018~1019,2295~2300,23
    04~2307,2353,2363~2367,2370,23
    86~2390,2392~2395,2403~2404,24
    23~2424
    protein:R:1~150 11~12,19~22,492,494,499~501,51
    0,523~524,840~841,844,1369~137
    2,1428,1431,1689,2048~2055,208
    7~2088,2658~2660,2832,2841~284
    3
    protein:S:1~81 67,1418,1444~1448,1507~1508,16
    74~1676
    protein:T:1~119 30~32,79~82,97,99~101,303,306~
    308,315~318,332~336,342~344,44
    6~448,483~484,486~489
    protein:U:4~56 1810,2721,2754~2755,2864~2866,
    2890
    protein:V:1~65 57,68~69,72~73,90,92~94,96
    protein:W:1~154 567~568,588,943~946,1024~1025,
    1067~1068,1084,1086~1087,1095~
    1099,1262~1264,1285~1288
    protein:X:7~88 1380~1385,1399~1401,1729~1731,
    2043~2044,2726,2834~2835,2855~
    2856,2895~2896,2904~2905
    protein:Y:95~236 320,521,537~541,551~553,594,61
    7~618,620~623,628,637~638,905~
    908,1072~1075,1089~1090,1266~1
    269,1293,1312~1313,1315~1317,1
    326~1331,1334~1335,1343,1356
    protein:Z:10~82 796~797,818,820~821,1601~1602,
    1604,1651~1652,1654,1771~1773,
    1829,1885~1887
    protein:1:1~56 51,111~113,119~121,148~149,178
    ~179,470~473,772~777,845,863~8
    64,881~882,890~892,894,1414~14
    15,1473,1687~1688,1695,1836~18
    37
    protein:2:1~49 53~54,58~61,86~88,120~123,462,
    513,1414~1415,1417~1419,1439,1
    486,1675~1677,1684~1685,1691
    protein:3:1~92 169~170,218~220,389~390,395~39
    6,735,1922~1923,1925,2120~2121
    ,2317~2320,2378~2379,2381~2382
    ,2407~2409,2427~2428,2432~2438
    ,2451~2452,2457~2462,2468
    protein:I:71~140 1162~1164,1167~1168,1180~1181,
    1183~1187,1192
    MG:0:8001 2483,2533~2534
    MG:0:8002 627,2483,2534
    MG:0:8003 876~877,2624
    MG:0:8004 456,459
    MG:0:8005 1836,1838~1839
    MG:0:8006 821~822,854
    MG:0:8007 832,1839~1840
    MG:0:8008 919,2464~2465
    MG:0:8009 2611~2612
    MG:0:8010 836,2615
    MG:0:8011 824,854
    MG:0:8013 877,2623
    MG:0:8014 2102,2537
    MG:0:8015 844,1689
    MG:0:8016 1504,1678~1679
    MG:0:8018 1291~1292
    MG:0:8020 1828,1830
    MG:0:8022 2097,2540
    MG:0:8023 2617~2618
    MG:0:8025 1120~1121
    MG:0:8026 2608~2610
    MG:0:8027 240,269
    MG:0:8028 1448,1677
    MG:0:8029 1503,1679
    MG:0:8030 1748~1749
    MG:0:8031 777~778
    MG:0:8033 1747~1749,2585
    MG:0:8034 2302~2303
    MG:0:8041 196,227~228
    MG:0:8042 1309,1346
    MG:0:8044 2048,2089
    MG:0:8048 2746,2750
    MG:0:8049 2421,2423
    MG:0:8054 162,2276
    MG:0:8057 1883,2012~2013
    MG:0:8061 1369,2650
    MG:0:8062 1489,1491
    MG:0:8067 1845~1846,1884
    MG:0:8074 1286~1287
    MG:0:8075 907~908
    MG:0:8077 880,883
    MG:0:8079 165,167~168
    MG:0:8080 1684,1724
    MG:0:8081 1420~1421,1438
    MG:0:8086 532~533
    MG:0:8087 682~683
    MG:0:8088 2540,2611
    MG:0:8089 517~518
    MG:0:8092 1843~1844
    MG:0:8093 1070~1071
    MG:0:8094 1096,1257
    MG:0:8096 1848~1849
    MG:0:8097 863~864
    MG:0:8102 2434,2458
    MG:0:8107 1106~1107
    MG:0:8110 903,1357
    MG:0:8117 1840~1841,2022
    K:0:8401 2102,2482,2535~2536
    K:0:8402 162~163,172
    NA:0:8501 1068~1069,1072,1087
    NA:0:8502 1119~1122
    NA:0:8503 643,1353~1354
    NA:0:8505 630~632
    NA:0:8506 2092~2094,2612,2649
    NA:0:8507 40~41,442~443
    NA:0:8508 1394,1432~1433,1724
    NA:0:8509 1133~1134
    NA:0:8510 2577~2579
    NA:0:8511 2523~2525
    NA:0:8514 2607~2608
    NA:0:8515 165~167
    NA:0:8516 896~897
    NA:0:8517 1416~1417
    NA:0:8518 2543~2544
    NA:0:8519 2465~2466
    NA:0:8520 2543~2544,2611,2615
    NA:0:8521 836~837,1736~1737
    NA:0:8523 2112~2113,2475~2476
    NA:0:8524 130,146~147
    NA:0:8525 776~777,779
    NA:0:8526 1971,2009~2010,2012
    NA:0:8527 821,854,1831~1832
    NA:0:8528 56,59~62
    NA:0:8529 66,107~108
    NA:0:8530 140~142
    NA:0:8531 170~171,218~219,221
    NA:0:8532 386~388,402
    NA:0:8533 1894,1897~1898,1939
    NA:0:8534 1894~1897
    NA:0:8535 621~623,630
    NA:0:8536 1706~1707
    NA:0:8539 2540,2611,2616,2645
    NA:0:8540 1740~1741,2033
    NA:0:8541 681~683
    NA:0:8542 892~893
    NA:0:8543 308,335,342
    NA:0:8544 2663,2811~2812,2816~2817
    NA:0:8549 914~915,1043~1045
    NA:0:8550 623~624,901
    NA:0:8553 1040~1041,1295~1296
    NA:0:8554 768~769,2111~2112
    NA:0:8555 1119,1243
    NA:0:8556 920,2278~2279,2463,2467
    NA:0:8557 941~942
    NA:0:8558 2610~2611
    NA:0:8559 898,922~924,2109
    NA:0:8560 453~454,478~479
    NA:0:8562 167~168,2110~2111,2277
    NA:0:8563 1359~1360
    NA:0:8564 636,2057~2058
    NA:0:8565 391~392,398~399
    NA:0:8566 544~545,611~612
    NA:0:8567 464,475
    NA:0:8568 798,814~816
    NA:0:8569 392,395
    NA:0:8571 2491~2492,2529
    NA:0:8572 919,922
    NA:0:8573 1576~1577,1618~1619
    NA:0:8574 195~196,415~416
    NA:0:8575 868~869,886~887
    NA:0:8576 633,2538~2539
    NA:0:8577 911,1293
    NA:0:8578 762,902~903
    NA:0:8579 831~833
    NA:0:8581 2585~2587,2592
    NA:0:8582 2772~2773
    NA:0:8585 1077,1079
    NA:R:8538 2659~2660
    CL:0:8817 594~595
    CL:0:8822 1072,1087
    NEG:0:8823 510~511,517~518
    1844 2qex:9
    (2.9Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 17664317 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3105
    protein:D:10~174 3017,3029~3030,3041~3042,3044~
    3046,3053,3056~3059
    protein:N:1~186 3004~3008,3010~3011,3013~3014,
    3026~3028,3034~3037,3046~3052,
    3068~3069,3114,3117~3119
    protein:Q:1~95 3008~3009,3011~3012
    protein:W:1~154 3084~3088,3097~3099
    MG:9:8095 3056~3057
    NA:9:8583 3058~3059
    1845 2qh2:A

    		 24 N/A URS000080DEB2 N/A synthetic
    construct
    32630    		 17889661
    1846 2qh3:A

    		 23 N/A URS000080E32D N/A synthetic
    construct
    32630    		 17889661
    1847 2qh4:A

    		 18 N/A URS000080E196 N/A synthetic
    construct
    32630    		 17889661
    1848 2qk9:B
    (2.55Å)
    		 18 N/A URS000080E35D N/A synthetic
    construct
    32630    		 17964265 Assembly1
    dna:C:19~36 1~18
    protein:A:134~286 1~2,8~12
    SO4:B:1007 8~9
    NA:A:9001 9~10
    1849 2qkb:C
    (2.4Å)
    		 20 N/A URS000080DD35 N/A synthetic
    construct
    32630    		 17964265 Assembly1
    dna:D:21~40 2~20
    protein:A:133~284 10~14
    protein:B:134~284 17~20
    1850 2qkk:C
    (3.2Å)
    		 14 N/A URS000080DFB1 N/A synthetic
    construct
    32630    		 17964265 Assembly1
    dna:D:15~28 1~14
    protein:A:133~286 4~8
    protein:B:134~284 11~12,14
    CA:A:1001 5~6
    1851 2qkk:G
    (3.2Å)
    		 14 N/A URS000080DFB1 N/A synthetic
    construct
    32630    		 17964265 Assembly2
    dna:H:15~28 1~14
    protein:E:135~283 4~8
    protein:F:133~285 11~12,14
    CA:E:1004 5~6
    1852 2qkk:K
    (3.2Å)
    		 14 N/A URS000080DFB1 N/A synthetic
    construct
    32630    		 17964265 Assembly3
    dna:L:15~28 1~14
    protein:I:136~284 4~8
    protein:J:134~284 11~12,14
    1853 2qkk:O
    (3.2Å)
    		 14 N/A URS000080DFB1 N/A synthetic
    construct
    32630    		 17964265 Assembly4
    dna:P:15~28 1~13
    protein:M:138~282 4~8
    protein:N:135~281 11~12,14
    1854 2qkk:T
    (3.2Å)
    		 14 N/A URS000080DFB1 N/A synthetic
    construct
    32630    		 17964265 Assembly5
    dna:U:15~28 1~10,12~14
    protein:R:135~282 4~8
    protein:S:135~282 11~12,14
    1855 2qkk:X
    (3.2Å)
    		 13 N/A URS000080DFB1 N/A synthetic
    construct
    32630    		 17964265 Assembly6
    dna:Z:15~25 4~14
    protein:W:135 11~12,14
    1856 2qus:A
    (2.4Å)
    		 69 GO:0004540 (F) RNA nuclease activity URS000080DE02 RF00008 Tobacco
    ringspot
    virus
    satellite
    RNA
    31504    		 18834200 Assembly1
    MG:A:70 22,24
    MG:A:72 9~10
    MG:A:73 48~49
    MG:A:74 43~44
    MG:A:76 2~3
    1857 2qus:B
    (2.4Å)
    		 69 GO:0004540 (F) RNA nuclease activity URS000080DE02 RF00008 Tobacco
    ringspot
    virus
    satellite
    RNA
    31504    		 18834200 Assembly2
    MG:B:70 56~57
    MG:B:73 18~19
    MG:B:76 33,36
    MG:B:77 6~7
    1858 2quw:A
    (2.2Å)
    		 12 N/A URS000080E0C8 N/A Tobacco
    ringspot
    virus
    satellite
    RNA
    31504    		 18834200 Assembly1
    rna:B:13~69 1~12
    1859 2quw:B
    (2.2Å)
    		 57 N/A URS000080DFDA N/A Tobacco
    ringspot
    virus
    satellite
    RNA
    31504    		 18834200 Assembly1
    rna:A:1~12 13,34,51,54~65
    MG:B:2 22,45
    MG:B:4 38~39,51~52
    MG:B:7 34,55
    MG:B:70 22~24
    MG:B:71 56~57
    MG:B:72 28~29
    1860 2quw:C
    (2.2Å)
    		 12 N/A URS000080E0C8 N/A Tobacco
    ringspot
    virus
    satellite
    RNA
    31504    		 18834200 Assembly2
    rna:D:13~69 1~12
    MG:C:14 5~6
    1861 2quw:D
    (2.2Å)
    		 57 N/A URS000080DFDA N/A Tobacco
    ringspot
    virus
    satellite
    RNA
    31504    		 18834200 Assembly2
    rna:C:1~12 13,34~35,51,54~65
    MG:D:11 57~58
    MG:D:12 19~20,22,45
    1862 2qux:C
    (2.44Å)
    		 25 N/A URS000080DEBC N/A synthetic
    construct
    32630    		 18066080 Assembly1
    protein:A:-1~127 6,11~13,15
    protein:B:1~127 5~6,12~16
    1863 2qux:F
    (2.44Å)
    		 25 N/A URS000080DEBC N/A synthetic
    construct
    32630    		 18066080 Assembly2
    protein:D:0~127 6,11~13,15
    protein:E:0~127 5~6,12~14,16
    1864 2qux:I
    (2.44Å)
    		 25 N/A URS000080DEBC N/A synthetic
    construct
    32630    		 18066080 Assembly3
    protein:G:-1~127 6,11~13,15
    protein:H:1~127 5~6,12~13,16
    GOL:I:26 11~12
    1865 2qux:L
    (2.44Å)
    		 25 N/A URS000080DEBC N/A synthetic
    construct
    32630    		 18066080 Assembly4
    protein:J:-1~127 6,9~13,15
    protein:K:-1~127 6,12~13,15~16
    GOL:L:26 10~11
    1866 2qux:O
    (2.44Å)
    		 25 N/A URS000080DEBC N/A synthetic
    construct
    32630    		 18066080 Assembly5
    protein:M:3~127 6,10~13,15
    protein:N:1~127 6,12~13,16
    1867 2qux:R
    (2.44Å)
    		 25 N/A URS000080DEBC N/A synthetic
    construct
    32630    		 18066080 Assembly6
    protein:P:0~127 6,11~13,15
    protein:Q:1~127 5~6,12~13,16
    1868 2qwy:A
    (2.8Å)
    		 52 N/A URS000080E1C7 N/A synthetic
    construct
    32630    		 18204466 Assembly1
    SAM:A:100 10~12,18,20~22,44~45,47
    1869 2qwy:B
    (2.8Å)
    		 52 N/A URS000080E1C7 N/A synthetic
    construct
    32630    		 18204466 Assembly2
    SAM:B:300 9~12,17~18,20~22,44~45,47
    1870 2qwy:C
    (2.8Å)
    		 52 N/A URS000080E1C7 N/A synthetic
    construct
    32630    		 18204466 Assembly3
    CS:C:501 5,25
    SAM:C:500 9~12,18,20~22,44~45,47
    1871 2r1g:A
    (12.5Å)
    		 24 N/A URS000080DED5 N/A synthetic
    construct
    32630    		 17996707
    11014170
    1872 2r1g:B
    (12.5Å)
    		 48 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E2AE RF00177 synthetic
    construct
    32630    		 17996707
    11014170
    1873 2r1g:C
    (12.5Å)
    		 29 N/A URS000080E240 N/A synthetic
    construct
    32630    		 17996707
    11014170
    1874 2r1g:D
    (12.5Å)
    		 28 N/A URS000080DFE9 N/A synthetic
    construct
    32630    		 17996707
    11014170
    1875 2r1g:E
    (12.5Å)
    		 11 N/A URS000080DD45 N/A synthetic
    construct
    32630    		 17996707
    11014170
    1876 2r1g:F
    (12.5Å)
    		 29 N/A URS000080DF62 N/A synthetic
    construct
    32630    		 17996707
    11014170
    1877 2r1g:X
    (12.5Å)
    		 11 N/A URS000080E097 N/A synthetic
    construct
    32630    		 17996707
    11014170
    1878 2r1s:A
    (1.4Å)
    		 13 N/A URS000080DEB6 N/A synthetic
    construct
    32630    		 17940138 Assembly1
    rna:B:14~26 1~13
    NA:A:14 4~5
    1879 2r1s:B
    (1.4Å)
    		 13 N/A URS000080DEB6 N/A synthetic
    construct
    32630    		 17940138 Assembly1
    rna:A:1~13 14~26
    NA:B:1 17~18
    1880 2r20:A
    (1.3Å)
    		 13 N/A URS000080DEB6 N/A synthetic
    construct
    32630    		 17940138 Assembly1
    rna:B:14~26 1~13
    NA:A:14 4~5
    1881 2r20:B
    (1.3Å)
    		 13 N/A URS000080DEB6 N/A synthetic
    construct
    32630    		 17940138 Assembly1
    rna:A:1~13 14~26
    NA:B:1 17~18
    1882 2r21:A
    (1.59Å)
    		 13 N/A URS000080DEB6 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:14~26 1~13
    NA:A:14 4~5
    NA:A:15 6~7
    1883 2r21:B
    (1.59Å)
    		 13 N/A URS000080DEB6 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:1~13 14~26
    NA:B:1 17~18
    1884 2r22:A
    (1.4Å)
    		 13 N/A URS000080DEB6 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:B:14~26 1~13
    NA:A:14 4~5
    1885 2r22:B
    (1.4Å)
    		 13 N/A URS000080DEB6 N/A synthetic
    construct
    32630    		 N/A Assembly1
    rna:A:1~13 14~26
    NA:B:1 17~18
    1886 2r7z:P
    (3.8Å)
    		 10 N/A URS000080E0E6 N/A synthetic
    construct
    32630    		 17994106 Assembly1
    dna:T:11~27 3~10
    protein:A:2~1455 1,3,10
    protein:B:20~1224 9~10
    1887 2r8s:R
    (1.95Å)
    		 159 GO:0000372 (P) Group I intron splicing URS000080E2DA RF00028 synthetic
    construct
    32630    		 18162543 Assembly1
    protein:L:1~214 130,167,169~173,195~197
    protein:H:1~224 130~133,166~167,175~176,179
    MG:R:1001 183~184,186
    MG:R:1002 184,186~188
    MG:R:1004 257~258
    1888 2r92:T
    (3.8Å)
    		 10 N/A URS000080E066 N/A synthetic
    construct
    32630    		 18004386 Assembly1
    rna:P:8~16 7~14
    protein:A:2~1455 6~8
    protein:B:19~1224 8~10,12
    1889 2r93:R
    (4.0Å)
    		 14 N/A URS000080DE58 N/A synthetic
    construct
    32630    		 18004386 Assembly1
    protein:A:2~1455 1,3~4,12,18
    protein:B:19~1224 3~7,17~18
    1890 2rd2:B
    (2.6Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000115891 RF00005 Escherichia
    coli
    562    		 18477696 Assembly1
    protein:A:8 902~903,906~907,911~913,916,92
    5,927,934~938,971~976
    1891 2rdo:A
    (9.1Å)
    		 117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000049E57 RF00001 Escherichia
    coli
    562    		 17996252
    1892 2rdo:B
    (9.1Å)
    		 2841 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00004B0F34 RF02541 Escherichia
    coli
    562    		 17996252
    1893 2re8:B
    (2.6Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000115891 RF00005 Escherichia
    coli
    562    		 18477696 Assembly1
    protein:A:8 902~904,906~907,910~914,925,92
    7,934~938,972~976
    1894 2rfk:D
    (2.87Å)
    		 21 N/A URS000080E178 N/A synthetic
    construct
    32630    		 18059286 Assembly1
    rna:E:1~26 1~9,17~21
    rna:F:4~17 9~17
    protein:A:8~341 3~5,21
    1895 2rfk:E
    (2.87Å)
    		 26 N/A URS000080DF8D N/A synthetic
    construct
    32630    		 18059286 Assembly1
    rna:D:1~21 1~5,12~21
    rna:F:4~17 6~12
    protein:A:8~341 4,6~10,17~24
    1896 2rfk:F
    (2.87Å)
    		 14 N/A URS000080E065 N/A synthetic
    construct
    32630    		 18059286 Assembly1
    rna:D:1~21 5,11~17
    rna:E:1~26 5~9
    1897 2rkj:C
    (4.5Å)
    		 238 GO:0000372 (P) Group I intron splicing URS000080E20D RF00028 Twortvirus
    twort
    55510    		 18172503 Assembly1
    rna:D:1~4 9~13,34,36~38,84,182~185,187
    protein:B:39~416 47~51,88~91,109,123~124,203,21
    2
    1898 2rkj:G
    (4.5Å)
    		 238 GO:0000372 (P) Group I intron splicing URS000080E20D RF00028 Twortvirus
    twort
    55510    		 18172503 Assembly2
    rna:H:1~4 9~13,34,36~38,84,182~185,187
    protein:F:39~416 47~48,50~52,88~91,109,123~124,
    203,212
    1899 2rkj:K
    (4.5Å)
    		 238 GO:0000372 (P) Group I intron splicing URS000080E20D RF00028 Twortvirus
    twort
    55510    		 18172503 Assembly3
    rna:L:1~4 9~13,34,36~38,84,182~185,187
    protein:J:39~416 47~48,50~52,88~91,109,123~124,
    203,212
    1900 2rkj:O
    (4.5Å)
    		 238 GO:0000372 (P) Group I intron splicing URS000080E20D RF00028 Twortvirus
    twort
    55510    		 18172503 Assembly4
    rna:P:1~4 9~13,34,36~38,84,182~185,187
    protein:N:39~416 47~48,50~51,88~91,109,123~124,
    203,212
    << < 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.