SEQ2FUN

FURNA
Download all results in tab-seperated text for 22390 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    101 1di2:D
    (1.9Å)
    		 10 N/A URS000080E216 N/A synthetic
    construct
    32630    		 9857205 Assembly1
    rna:C:1~10 11~20
    protein:A:112~180 16~19
    protein:B:112~180 13~16
    102 1di2:E
    (1.9Å)
    		 10 N/A URS000080E216 N/A synthetic
    construct
    32630    		 9857205 Assembly2
    rna:E-2:21~30 21~30
    103 1di2:G
    (1.9Å)
    		 10 N/A URS000080E216 N/A synthetic
    construct
    32630    		 9857205 Assembly3
    rna:G-3:41~50 41~48,50
    104 1dk1:B
    (2.8Å)
    		 57 N/A URS000080E305 N/A Thermus
    thermophilus
    274    		 10742169 Assembly1
    protein:A:101~186 20~23,30~33,37~41,49~54
    NA:B:211 4,54~55
    105 1dqf:B
    (2.2Å)
    		 10 N/A URS000080E151 N/A synthetic
    construct
    32630    		 10999608 Assembly1
    rna:A:1~9 10~15,17~19
    106 1dqh:B
    (1.7Å)
    		 10 N/A URS000080E151 N/A synthetic
    construct
    32630    		 10999608 Assembly1
    rna:A:1~9 10~15,17~19
    107 1drr:B

    		 10 N/A URS000080DFE7 N/A synthetic
    construct
    32630    		 9425027 Assembly1
    dna:A:1~10 1~10
    108 1drz:B
    (2.3Å)
    		 72 GO:0004540 (F) RNA nuclease activity URS000080E321 RF00094 Hepatitis
    delta
    virus
    12475    		 9783582 Assembly1
    protein:A:4~98 144,148~154,157~158
    MG:B:402 169~170
    109 1duh:A
    (2.7Å)
    		 45 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080E0AE RF00169 synthetic
    construct
    32630    		 10801497 Assembly1
    rna:A-2:31~75 31~38,43~75
    MG:A:2 59~60
    SO4:A:4 48~49
    110 1dul:B
    (1.8Å)
    		 49 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...    		 URS000080DD2B RF00169 synthetic
    construct
    32630    		 10678824 Assembly1
    protein:A:1~82 139~141,148~151,163~164
    K:B:701 146~147,163~165
    K:B:702 135~137
    K:B:703 149~150,161~163
    111 1duq:A
    (2.1Å)
    		 12 N/A URS000080DFAD N/A synthetic
    construct
    32630    		 10792052 Assembly1
    rna:B:117 101~112
    112 1duq:B
    (2.1Å)
    		 14 N/A URS000080DE8A N/A synthetic
    construct
    32630    		 10792052 Assembly1
    rna:A:101~112 117~120,122~124,126~130
    NA:B:911 123~124
    113 1duq:C
    (2.1Å)
    		 12 N/A URS000080DFAD N/A synthetic
    construct
    32630    		 10792052 Assembly2
    rna:D:217~230 201~212
    NA:C:906 201~202
    NA:C:913 201~202
    114 1duq:D
    (2.1Å)
    		 14 N/A URS000080DE8A N/A synthetic
    construct
    32630    		 10792052 Assembly2
    rna:C:201~212 217~220,222~224,226~230
    NA:C:904 223~224,226
    NA:D:901 220~222
    115 1duq:E
    (2.1Å)
    		 12 N/A URS000080DFAD N/A synthetic
    construct
    32630    		 10792052 Assembly3
    rna:F:317~330 301~312
    116 1duq:F
    (2.1Å)
    		 14 N/A URS000080DE8A N/A synthetic
    construct
    32630    		 10792052 Assembly3
    rna:E:301~312 317~320,322~324,326~330
    NA:E:912 323~324
    117 1duq:G
    (2.1Å)
    		 12 N/A URS000080DFAD N/A synthetic
    construct
    32630    		 10792052 Assembly4
    rna:H:417~430 401~412
    NA:G:905 401~402
    NA:G:914 401~402
    118 1duq:H
    (2.1Å)
    		 14 N/A URS000080DE8A N/A synthetic
    construct
    32630    		 10792052 Assembly4
    rna:G:401~412 417~420,422~424,426~430
    NA:H:902 423~424,426
    NA:H:903 420~422
    119 1dv4:A
    (4.5Å)
    		 362 N/A N/A N/A Thermus
    thermophilus
    274    		 10588692
    120 1dz5:C

    		 22 N/A URS000080DE18 N/A Homo
    sapiens
    9606    		 10742179
    518

    346

    M319_0.6    		 Assembly1
    protein:A:1~101 24~25
    protein:B:1~101 13~19
    rna:D:34~55 8~13,20~29
    121 1dz5:D

    		 22 N/A URS000080DE18 N/A Homo
    sapiens
    9606    		 10742179
    518

    346

    M319_0.6    		 Assembly1
    protein:A:1~101 40~45
    protein:B:1~101 50~51
    rna:C:8~29 34~39,46~55
    122 1e4p:A

    		 24 N/A URS000080DF64 N/A Neurospora
    5140    		 11142381
    123 1e7k:C
    (2.9Å)
    		 17 N/A URS000080E042 N/A Homo
    sapiens
    9606    		 11163207
    10545122
    708

    705

    52

    183

    123

    125    		 Assembly1
    protein:A:4~128 29~32,42~43
    124 1e7k:D
    (2.9Å)
    		 17 N/A URS000080E042 N/A Homo
    sapiens
    9606    		 11163207
    10545122
    708

    705

    52

    183

    123

    125    		 Assembly2
    protein:B:6~128 29~32,42~43
    125 1e8o:E
    (3.2Å)
    		 50 GO:0006617 (P) SRP-dependent cotransla...
    GO:0035195 (P) miRNA-mediated post-tra...
    GO:0005786 (C) signal recognition part...
    GO:0016442 (C) RISC complex    		 URS000080E0CE RF00017
    RF04277    		 Homo
    sapiens
    9606    		 11089964
    M054_0.6

    M109_0.6

    M044_0.6

    445

    M151_0.6    		 Assembly1
    protein:A:2~75 112~114
    protein:B:2~95 113,135~136
    protein:C:5~75 121~124
    protein:D:2~95 119,121,123~129
    126 1e8s:C
    (4.0Å)
    		 86 GO:0006617 (P) SRP-dependent cotransla...
    GO:0035195 (P) miRNA-mediated post-tra...
    GO:0005786 (C) signal recognition part...
    GO:0016442 (C) RISC complex    		 URS000080DFFF RF00017
    RF04277    		 Homo
    sapiens
    9606    		 11089964
    M054_0.6

    M109_0.6

    445

    M151_0.6

    M044_0.6

    509
    127 1e95:A

    		 36 N/A URS000080DFAB N/A Simian
    retrovirus
    1
    11942    		 11501999
    128 1ebq:A

    		 29 N/A URS000080E096 N/A synthetic
    construct
    32630    		 9000617
    129 1ebr:A

    		 30 N/A URS000080DF20 N/A synthetic
    construct
    32630    		 9000617
    130 1ebs:A

    		 29 N/A URS000080E096 N/A synthetic
    construct
    32630    		 9000617
    131 1ec6:C
    (2.4Å)
    		 20 N/A URS000080E29D N/A synthetic
    construct
    32630    		 10676814 Assembly2
    protein:B:4~87 6~15
    132 1ec6:D
    (2.4Å)
    		 20 N/A URS000080E29D N/A synthetic
    construct
    32630    		 10676814 Assembly1
    protein:A:4~90 7,10~16
    133 1efo:B
    (2.3Å)
    		 10 N/A URS000080E346 N/A synthetic
    construct
    32630    		 10860725 Assembly1
    dna:A:1~9 10~15,17~19
    134 1efs:B

    		 13 N/A URS000080E099 N/A synthetic
    construct
    32630    		 11311717 Assembly1
    dna:A:1~13 26,25,24,23,22,21,20,19,18,17,
    16,15,14
    135 1efw:C
    (3.0Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000150212 RF00005 Escherichia
    coli
    562    		 10843857 Assembly1
    protein:A:1~580 11,26~29,32~38,68,72
    136 1efw:D
    (3.0Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000150212 RF00005 Escherichia
    coli
    562    		 10843857 Assembly2
    protein:B:1~580 28,32~38
    137 1eg0:I
    (11.5Å)
    		 33 N/A N/A N/A Escherichia
    coli
    562    		 10721991
    138 1eg0:L
    (11.5Å)
    		 57 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE3F RF02541 Escherichia
    coli
    562    		 10721991
    139 1eg0:M
    (11.5Å)
    		 26 N/A URS000080DE5C N/A Escherichia
    coli
    562    		 10721991
    140 1eg0:O
    (11.5Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DD9A RF00005 Escherichia
    coli
    562    		 10721991
    141 1egk:A
    (3.1Å)
    		 20 N/A URS000080DE4B N/A synthetic
    construct
    32630    		 10864501 Assembly1
    dna:B:21~54 10~20
    dna:D:121~154 1~10,14
    142 1egk:C
    (3.1Å)
    		 20 N/A URS000080DE4B N/A synthetic
    construct
    32630    		 10864501 Assembly1
    dna:B:21~54 101~110,114
    dna:D:121~154 110~120
    143 1eht:A

    		 33 N/A URS000080E163 N/A synthetic
    construct
    32630    		 9253414 Assembly1
    TEP:A:34 6~8,22,24,28
    144 1ehz:A
    (1.93Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 10943889 Assembly1
    MG:A:590 37~38
    MG:A:540 20~21
    MG:A:580 7,14
    MN:A:530 16,19
    145 1ei2:A

    		 25 N/A URS000080DF33 N/A Homo
    sapiens
    9606    		 10637322
    M325_0.6

    M175_0.6    		 Assembly1
    NMY:A:26 5~8,14,17~18
    146 1eiy:C
    (3.3Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E078 RF00005 Thermus
    thermophilus
    HB8
    300852    		 9016717 Assembly1
    protein:A:6~350 75~76
    protein:B:1~785 26~27,74~75
    protein:A-2:6~350 19,43~44,56
    protein:B-2:1~785 11~12,25~26,34~37
    147 1ekz:B

    		 30 N/A URS000080DFCA N/A synthetic
    construct
    32630    		 10698941 Assembly1
    protein:A:1~76 2~4,15~16,28~29
    148 1elh:A

    		 12 N/A URS000080E111 N/A Escherichia
    coli
    562    		 1371071 Assembly1
    rna:B:8~20 -1,1~10
    149 1elh:B

    		 13 N/A URS000080DD78 N/A Escherichia
    coli
    562    		 1371071 Assembly1
    rna:A:-1~11 9~20
    150 1emi:B
    (7.5Å)
    		 161 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DD27 RF00177 Thermus
    thermophilus
    274    		 10836793
    151 1esh:A

    		 13 N/A URS000080DE89 N/A synthetic
    construct
    32630    		 10802741
    152 1esy:A

    		 19 GO:0043484 (P) regulation of RNA splicing URS000080E02B RF01380 Human
    immunodeficiency
    virus
    1
    11676    		 10860728
    153 1et4:A
    (2.3Å)
    		 35 N/A URS000080E03A N/A synthetic
    construct
    32630    		 10903943 Assembly1
    CNC:A:701 214,216,229~231
    154 1et4:B
    (2.3Å)
    		 35 N/A URS000080E03A N/A synthetic
    construct
    32630    		 10903943 Assembly2
    CNC:B:801 314,316,329~330
    155 1et4:C
    (2.3Å)
    		 35 N/A URS000080E03A N/A synthetic
    construct
    32630    		 10903943 Assembly3
    CNC:C:901 414,416,430
    156 1et4:D
    (2.3Å)
    		 35 N/A URS000080E03A N/A synthetic
    construct
    32630    		 10903943 Assembly4
    CNC:D:1001 514,516,529~530
    157 1et4:E
    (2.3Å)
    		 35 N/A URS000080E03A N/A synthetic
    construct
    32630    		 10903943 Assembly5
    CNC:E:601 114,116,129~130
    158 1etf:A

    		 34 N/A URS000080E35B N/A synthetic
    construct
    32630    		 8703216 Assembly1
    protein:B:33~55 45~48,66~70,72~73
    159 1etg:A

    		 34 N/A URS000080E35B N/A synthetic
    construct
    32630    		 8703216 Assembly1
    protein:B:33~55 45~48,66~73
    160 1euq:B
    (3.1Å)
    		 72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E003 RF00005 Escherichia
    coli
    562    		 10860750 Assembly1
    protein:A:8 902~904,906,911~913,916,925,92
    7,934~938,972~976
    161 1euy:B
    (2.6Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E0EE RF00005 Escherichia
    coli
    562    		 10860750 Assembly1
    protein:A:8 902~907,911~914,916,925,927,93
    4~938,971~976
    162 1evv:A
    (2.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    4930    		 10926517 Assembly1
    MG:A:902 20~21
    MG:A:908 71~72
    SPM:A:501 53~55,58
    163 1exd:B
    (2.7Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DE52 RF00005 Escherichia
    coli
    562    		 10881199 Assembly1
    protein:A:8~547 902~908,911~913,925,934~938,96
    9,971~976
    SO4:B:1393 925~926,944
    164 1exy:A

    		 33 N/A URS000080E1F2 N/A synthetic
    construct
    32630    		 10647177 Assembly1
    protein:B:101~116 3~9,18~26
    165 1f1t:A
    (2.8Å)
    		 38 N/A URS000080DE28 N/A synthetic
    construct
    32630    		 10926496 Assembly1
    SR:A:201 32,34
    ROS:A:101 7~8,24~25,28~30
    166 1f27:A
    (1.3Å)
    		 19 N/A URS000080E0B3 N/A synthetic
    construct
    32630    		 10698630 Assembly1
    rna:B:22~32 4~5,7~8,10~19
    BTN:A:33 6~7
    167 1f27:B
    (1.3Å)
    		 11 N/A URS000080DF5E N/A synthetic
    construct
    32630    		 10698630 Assembly1
    rna:A:3~21 22~32
    BTN:A:33 26~27
    168 1f5g:A

    		 10 N/A URS000080DE87 N/A synthetic
    construct
    32630    		 10995243 Assembly1
    rna:B:1~10 1~10
    169 1f5g:B

    		 10 N/A URS000080DE87 N/A synthetic
    construct
    32630    		 10995243 Assembly1
    rna:A:1~10 1~10
    170 1f5h:A

    		 10 N/A URS000080DE87 N/A synthetic
    construct
    32630    		 10995243 Assembly1
    rna:B:1~10 1~10
    171 1f5h:B

    		 10 N/A URS000080DE87 N/A synthetic
    construct
    32630    		 10995243 Assembly1
    rna:A:1~10 1~10
    172 1f5u:A

    		 18 N/A URS000080DEA8 N/A synthetic
    construct
    32630    		 10931958 Assembly1
    rna:B:1~18 9~11,13
    173 1f5u:B

    		 18 N/A URS000080DEA8 N/A synthetic
    construct
    32630    		 10931958 Assembly1
    rna:A:1~18 9~11,13
    174 1f6u:B

    		 19 GO:0043484 (P) regulation of RNA splicing URS000080E02B RF01380 Human
    immunodeficiency
    virus
    1
    11676    		 10926523 Assembly1
    protein:A:1 209~213,215
    175 1f6x:A

    		 27 N/A URS000080DDA0 N/A synthetic
    construct
    32630    		 10999599
    176 1f6z:A

    		 27 N/A URS000080E1DD N/A synthetic
    construct
    32630    		 10999599
    177 1f78:A

    		 27 N/A URS000080DDA0 N/A synthetic
    construct
    32630    		 10999599
    178 1f79:A

    		 27 N/A URS000080E1DD N/A synthetic
    construct
    32630    		 10999599 Assembly1
    NCO:A:28 5,21
    179 1f7f:A

    		 27 N/A URS000080DDA0 N/A synthetic
    construct
    32630    		 10999599
    180 1f7g:A

    		 27 N/A URS000080E1DD N/A synthetic
    construct
    32630    		 10999599
    181 1f7h:A

    		 27 N/A URS000080DDA0 N/A synthetic
    construct
    32630    		 10999599
    182 1f7i:A

    		 27 N/A URS000080E1DD N/A synthetic
    construct
    32630    		 10999599 Assembly1
    NCO:A:28 5~6,21
    183 1f7u:B
    (2.2Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E1EA RF00005 Saccharomyces
    cerevisiae
    4932    		 11060012 Assembly1
    protein:A:2~607 903~904,913~916,918~919,923~92
    4,934~941,956,969~974,976
    184 1f7v:B
    (2.9Å)
    		 73 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080E1EA RF00005 Saccharomyces
    cerevisiae
    4932    		 11060012 Assembly1
    protein:A:2~607 904,914~916,918~919,922~925,93
    4~941,956,969~972
    185 1f7y:B
    (2.8Å)
    		 57 N/A URS000080E305 N/A synthetic
    construct
    32630    		 11071808 Assembly1
    protein:A:1~86 20~23,30~33,37~41,49~54
    186 1f84:A

    		 29 N/A URS000080E22C N/A synthetic
    construct
    32630    		 11101890
    187 1f85:A

    		 14 N/A URS000080E35E N/A synthetic
    construct
    32630    		 11101890
    188 1f8v:R
    (3.0Å)
    		 25 N/A URS000080E0CB N/A Pariacoto
    virus
    103782    		 11135676 Assembly1
    protein:A:7~361 4~5
    protein:A-6:7~361 13~14,16~17
    rna:R-6:1~25 4~21,23~24
    189 1f9l:A

    		 22 N/A URS000080E09C N/A synthetic
    construct
    32630    		 10653698
    190 1fcw:A
    (17.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 10931859 Assembly1
    rna:B:1~76 1~74
    191 1fcw:B
    (17.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 10931859 Assembly1
    rna:A:1~76 1~74
    rna:C:1~76 1,16,71~74
    192 1fcw:C
    (17.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 10931859 Assembly1
    rna:B:1~76 47,74~76
    193 1fcw:D
    (17.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 10931859 Assembly1
    rna:E:1~76 5~26,44~65,67~68
    194 1fcw:E
    (17.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 10931859 Assembly1
    rna:D:1~76 1~8,13~21,47~70
    195 1feq:A

    		 17 N/A URS000080DE6A N/A synthetic
    construct
    32630    		 11063577
    196 1feu:B
    (2.3Å)
    		 19 N/A URS000080E277 N/A synthetic
    construct
    32630    		 11418764 Assembly1
    rna:C:90~110 70~86
    protein:A:1~185 73~77
    197 1feu:C
    (2.3Å)
    		 21 N/A URS000080E275 N/A synthetic
    construct
    32630    		 11418764 Assembly1
    rna:B:69~87 90~107
    protein:A:1~185 93~95,102~106
    198 1feu:E
    (2.3Å)
    		 19 N/A URS000080E277 N/A synthetic
    construct
    32630    		 11418764 Assembly2
    rna:F:90~110 70~86
    protein:D:1~189 73~77
    199 1feu:F
    (2.3Å)
    		 21 N/A URS000080E275 N/A synthetic
    construct
    32630    		 11418764 Assembly2
    rna:E:69~87 90~107
    protein:D:1~189 92,94,102~106
    200 1ffk:0
    (2.4Å)
    		 2706 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540 Haloarcula
    marismortui
    2238    		 10937989 Assembly1
    rna:9:1~122 955~958,1011,1013~1015,1084,10
    99,1124,1130~1132
    protein:A:1~237 820,1653,1846,1852,1861,1869,1
    872,1875~1876,1880~1882,1899,1
    943,2633~2634
    protein:B:1~337 1733,2093,2546,2609,2657,2672,
    2679,2715,2717,2719,2756,2765,
    2808,2821,2838~2839,2861,2897~
    2898
    protein:C:1~246 34~35,458,672,1308,1343,1359,2
    100~2101
    protein:D:10~174 2337~2338
    protein:E:2~119 262~264
    protein:F:1~157 1055,1134,2310,2519~2520
    protein:G:4~145 1244,2676,2803,2815
    protein:H:1~132 2582~2583,2598,2687
    protein:I:1~194 188~189,194~195,243,251,402,77
    0,2263,2275
    protein:J:1~151 166,692,697~698,700,904,1294~1
    295,2430~2431
    protein:K:1~186 2368,2415
    protein:L:1~115 655~656,659~660,710,721,745
    protein:M:1~143 1501,1565~1566,1593,1708,1719,
    1761,1784~1785
    protein:N:1~95 951,2296,2365,2394,2404
    protein:O:1~150 21,1370,1689,2088~2089
    protein:S:1~65 68,94
    protein:T:1~154 945,1067,1086,1096~1097,1285
    protein:V:1~143 622~623,1089,1268,1312~1313,13
    15,1326~1328,1335
    protein:W:10~82 797,818,1654,1773,1829,1885
    protein:X:1~56 121,149,1695,1836~1837
    protein:Z:1~92 170,390,2121,2318,2434~2435,24
    59
    protein:1:1~172 2567,2704
    K:0:2924 2102,2482,2535~2536
    MG:0:2925 2483,2532~2534
    MG:0:2926 627,2483,2534
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.