SEQ2FUN

FURNA
Download all results in tab-seperated text for 22390 RNAs.
  • Click the entry in the '#' column to view structure details of that RNA chain.
  • Hover over PDB to view the title of the structure.
  • Hover over Rfam to view names of Rfam families.
  • Hover over PubMed to view title of the PubMed publications.
  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.
  • Sort results by
    << < 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 > >>
    Go to page

    # PDB
    (Resolution)
    Length EC number
    & GO term
    RNAcentral Rfam Taxon PubMed ATtRACT
    motif
    Ligand &
    binding nucleotides
    2901 3ncu:D
    (2.55Å)

    12 N/A URS000080E329 N/A synthetic
    construct

    32630
    20581823 Assembly1
    protein:A:804~923 9~10,12
    protein:B:804~923 1~3
    rna:C:1~12 1~12
    2902 3nd3:A
    (1.37Å)

    16 N/A URS000080DEAD N/A synthetic
    construct

    32630
    21878548 Assembly1
    rna:A-2:1~16 1~16
    K:A:17 13~14
    NA:A:19 5~6
    2903 3nd4:A
    (1.524Å)

    16 N/A URS000080DDE8 N/A synthetic
    construct

    32630
    21878548 Assembly1
    rna:A-2:1~16 1~16
    K:A:18 6~7
    2904 3ndb:M
    (3.0Å)

    136 GO:0006617 (P) SRP-dependent cotransla...
    GO:0048501 (C) signal recognition part...
    URS000080E28C RF01857 Methanocaldococcus
    jannaschii
    DSM
    2661

    243232
    21336278 Assembly1
    protein:A:1~87 157~160,162~167,206~209,216
    protein:B:2~455 195~196,203~206,218~221
    2905 3nj6:A
    (0.95Å)

    10 N/A URS000080DE08 N/A synthetic
    construct

    32630
    20702420 Assembly1
    rna:A-2:1~10 1~10
    2906 3nj7:A
    (1.904Å)

    10 N/A URS000080DE08 N/A synthetic
    construct

    32630
    20702420 Assembly1
    rna:B:1~10 1~10
    2907 3nj7:B
    (1.904Å)

    10 N/A URS000080DE08 N/A synthetic
    construct

    32630
    20702420 Assembly1
    rna:A:1~10 1~10
    2908 3nj7:C
    (1.904Å)

    10 N/A URS000080DE08 N/A synthetic
    construct

    32630
    20702420 Assembly2
    rna:D:1~10 1~10
    2909 3nj7:D
    (1.904Å)

    10 N/A URS000080DE08 N/A synthetic
    construct

    32630
    20702420 Assembly2
    rna:C:1~10 1~10
    2910 3nj7:E
    (1.904Å)

    10 N/A URS000080DE08 N/A synthetic
    construct

    32630
    20702420 Assembly3
    rna:F:1~10 1~10
    2911 3nj7:F
    (1.904Å)

    10 N/A URS000080DE08 N/A synthetic
    construct

    32630
    20702420 Assembly3
    rna:E:1~10 1~10
    2912 3nkb:B
    (1.916Å)

    64 N/A URS000080DDAA N/A Homo
    sapiens

    9606
    20677830
    93
    Assembly1
    rna:A:2~9 31~38
    MG:B:204 55~56
    MG:B:205 57~58
    MG:B:207 64~65
    2913 3nmu:D
    (2.729Å)

    34 N/A URS000080E0DB N/A Pyrococcus
    furiosus

    2261
    20864039 Assembly1
    protein:A:8~373 13,15,29~34
    protein:G:4~124 14~15,25~28
    rna:I:1~13 1~12
    2914 3nmu:E
    (2.729Å)

    34 N/A URS000080E0DB N/A Pyrococcus
    furiosus

    2261
    20864039 Assembly2
    protein:B:8~373 12~15,18,29~34
    protein:C:4~124 14~16,25~28
    rna:K:2~13 1~11
    2915 3nmu:I
    (2.729Å)

    13 N/A URS000080E0A7 N/A synthetic
    construct

    32630
    20864039 Assembly1
    protein:A:8~373 1~2
    protein:G:4~124 4~5
    rna:D:1~34 2~13
    2916 3nmu:K
    (2.729Å)

    12 N/A URS000080E0A7 N/A synthetic
    construct

    32630
    20864039 Assembly2
    protein:C:4~124 4~5
    rna:E:1~34 3~13
    2917 3nnh:E
    (2.7501Å)

    11 N/A URS000080E207 N/A Homo
    sapiens

    9606
    20947024
    M112_0.6

    M108_0.6
    Assembly1
    protein:A:14~99 3~7,9~10
    protein:C:14~98 8~11
    2918 3nnh:F
    (2.7501Å)

    11 N/A URS000080E207 N/A Homo
    sapiens

    9606
    20947024 Assembly2
    protein:B:14~99 8~10
    protein:D:14~100 2~6
    2919 3npn:A
    (2.792Å)

    50 N/A URS000080DDCD N/A Ralstonia
    solanacearum

    305
    20864509 Assembly1
    SAH:A:55 15~16,29~32,47
    2920 3npq:A
    (2.1814Å)

    51 GO:0010468 (P) regulation of gene expr...
    GO:0046498 (P) S-adenosylhomocysteine ...
    URS000080E144 RF01057 Ralstonia
    solanacearum

    305
    20864509 Assembly1
    SAH:A:55 15~16,29~32,47
    NCO:A:56 15,28
    NCO:A:58 16~19,27~28
    NCO:A:59 21,23
    NCO:A:60 7,9
    2921 3npq:B
    (2.1814Å)

    49 GO:0010468 (P) regulation of gene expr...
    GO:0046498 (P) S-adenosylhomocysteine ...
    URS000080E144 RF01057 Ralstonia
    solanacearum

    305
    20864509 Assembly2
    SAH:B:55 15~16,29~32,47
    NCO:B:56 24~25
    NCO:B:57 16~19,27~28
    NCO:B:58 15,28
    NCO:B:59 21,23
    NCO:B:60 7,9
    2922 3npq:C
    (2.1814Å)

    50 GO:0010468 (P) regulation of gene expr...
    GO:0046498 (P) S-adenosylhomocysteine ...
    URS000080E144 RF01057 Ralstonia
    solanacearum

    305
    20864509 Assembly3
    SAH:C:55 15~16,29~31,47
    NCO:C:58 15~19,27
    NCO:C:59 21,23
    NCO:C:60 6~7
    2923 3nvi:E
    (2.709Å)

    24 N/A URS000080DE0F N/A Pyrococcus
    furiosus
    DSM
    3638

    186497
    20864039 Assembly1
    protein:A:127~373 2~4,10,12,15,19~25
    protein:B:4~124 4~6,17~19
    2924 3nvi:F
    (2.709Å)

    24 N/A URS000080DE0F N/A Pyrococcus
    furiosus
    DSM
    3638

    186497
    20864039 Assembly1
    protein:C:127~373 3~4,15,19~25
    protein:D:4~124 4~6,17~19
    2925 3nvk:K
    (3.209Å)

    24 N/A URS000080E0DB N/A synthetic
    construct

    32630
    20864039 Assembly1
    protein:A:8~370 3,5~6,17,21~24
    protein:E:4~124 6~7,18~20
    rna:G:2~4 1,3~4
    2926 3nvk:L
    (3.209Å)

    24 N/A URS000080E0DB N/A synthetic
    construct

    32630
    20864039 Assembly1
    protein:F:8~370 4~6,17,21~24
    protein:H:4~124 6~8,18~20
    rna:S:2~4 1~4
    2927 3o3i:A
    (2.801Å)

    14 N/A URS000080E0AC N/A synthetic
    construct

    32630
    21193640 Assembly1
    protein:X:276~393 11~14
    protein:X-2:276~393 1~3
    rna:A-2:1~14 1~12
    2928 3o6e:A
    (2.904Å)

    14 N/A URS000080E0AC N/A synthetic
    construct

    32630
    21193640 Assembly1
    protein:X:277~393 11~14
    protein:X-2:277~393 1~3
    rna:A-2:1~14 1~12
    2929 3o7v:A
    (2.1Å)

    14 N/A URS000080E0AC N/A synthetic
    construct

    32630
    21193640 Assembly1
    protein:X:277~393 11~14
    protein:X-2:277~393 1~3
    rna:A-2:1~14 1~12
    2930 3og8:C
    (2.4Å)

    14 N/A URS000080DFA5 N/A synthetic
    construct

    32630
    20961956 Assembly1
    protein:A:803~928 1~2,4
    protein:B:801~928 7,11,14
    rna:D:1~14 1~14
    2931 3og8:D
    (2.4Å)

    14 N/A URS000080DFA5 N/A synthetic
    construct

    32630
    20961956 Assembly1
    protein:A:803~928 7,14
    protein:B:801~928 1~2,4
    rna:C:1~14 1~14
    2932 3oij:C
    (3.0Å)

    14 N/A URS000080DE57 N/A synthetic
    construct

    32630
    21087996 Assembly1
    protein:A:28~252 5~11
    protein:B:28~252 6,11~12
    2933 3oij:D
    (3.0Å)

    14 N/A URS000080DE57 N/A synthetic
    construct

    32630
    21087996 Assembly1
    protein:A:28~252 6,11~12
    protein:B:28~252 5~11
    2934 3oin:C
    (1.9Å)

    14 N/A URS000080DE57 N/A Saccharomyces
    cerevisiae

    4932
    21087996
    386
    Assembly1
    protein:A:28~252 5~12
    protein:B:28~252 5~7,11~13
    2935 3ok2:B
    (1.963Å)

    10 N/A URS000080E1AA N/A synthetic
    construct

    32630
    22638588 Assembly1
    rna:A:1~11 1~10
    2936 3ok2:D
    (1.963Å)

    10 N/A URS000080E1AA N/A synthetic
    construct

    32630
    22638588 Assembly2
    rna:C:1~11 1~10
    2937 3ok2:F
    (1.963Å)

    10 N/A URS000080E1AA N/A synthetic
    construct

    32630
    22638588 Assembly3
    rna:E:1~11 1~10
    2938 3ok4:2
    (1.149Å)

    10 N/A URS000080E1AA N/A synthetic
    construct

    32630
    N/A Assembly14
    rna:1:1~11 1~10
    2939 3ok4:4
    (1.149Å)

    10 N/A URS000080E1AA N/A synthetic
    construct

    32630
    N/A Assembly15
    rna:3:1~11 1~10
    2940 3ok4:B
    (1.149Å)

    10 N/A URS000080E1AA N/A synthetic
    construct

    32630
    N/A Assembly1
    rna:A:1~11 1~10
    2941 3ok4:D
    (1.149Å)

    10 N/A URS000080E1AA N/A synthetic
    construct

    32630
    N/A Assembly2
    rna:C:1~11 1~10
    2942 3ok4:F
    (1.149Å)

    10 N/A URS000080E1AA N/A synthetic
    construct

    32630
    N/A Assembly3
    rna:E:1~11 1~10
    2943 3ok4:H
    (1.149Å)

    10 N/A URS000080E1AA N/A synthetic
    construct

    32630
    N/A Assembly4
    rna:G:1~11 1~10
    2944 3ok4:J
    (1.149Å)

    10 N/A URS000080E1AA N/A synthetic
    construct

    32630
    N/A Assembly5
    rna:I:1~11 1~10
    2945 3ok4:L
    (1.149Å)

    10 N/A URS000080E1AA N/A synthetic
    construct

    32630
    N/A Assembly6
    rna:K:1~11 1~10
    2946 3ok4:N
    (1.149Å)

    10 N/A URS000080E1AA N/A synthetic
    construct

    32630
    N/A Assembly7
    rna:M:1~11 1~10
    2947 3ok4:P
    (1.149Å)

    10 N/A URS000080E1AA N/A synthetic
    construct

    32630
    N/A Assembly8
    rna:O:1~11 1~10
    2948 3ok4:R
    (1.149Å)

    10 N/A URS000080E1AA N/A synthetic
    construct

    32630
    N/A Assembly9
    rna:Q:1~11 1~4,6~10
    2949 3ok4:T
    (1.149Å)

    10 N/A URS000080E1AA N/A synthetic
    construct

    32630
    N/A Assembly10
    rna:S:1~11 1~10
    2950 3ok4:V
    (1.149Å)

    10 N/A URS000080E1AA N/A synthetic
    construct

    32630
    N/A Assembly11
    rna:U:1~11 1~10
    2951 3ok4:X
    (1.149Å)

    10 N/A URS000080E1AA N/A synthetic
    construct

    32630
    N/A Assembly12
    rna:W:1~11 1~10
    2952 3ok4:Z
    (1.149Å)

    10 N/A URS000080E1AA N/A synthetic
    construct

    32630
    N/A Assembly13
    rna:Y:1~11 1~10
    2953 3ol6:B
    (2.5Å)

    18 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly1
    protein:A:1~461 598~606
    rna:C:688~701 601~612
    rna:D:804~806 596~598
    2954 3ol6:C
    (2.5Å)

    14 N/A URS000080E1D2 N/A synthetic
    construct

    32630
    21148772 Assembly1
    protein:A:1~461 695,697~701
    rna:B:596~613 690~701
    2955 3ol6:F
    (2.5Å)

    18 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly2
    protein:E:1~461 598~606
    rna:G:688~701 601~612
    rna:H:804~806 596~598
    2956 3ol6:G
    (2.5Å)

    14 N/A URS000080E1D2 N/A synthetic
    construct

    32630
    21148772 Assembly2
    protein:E:1~461 695~701
    rna:F:596~613 690~701
    2957 3ol6:J
    (2.5Å)

    19 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly3
    protein:I:1~461 598~606
    rna:K:688~701 601~612
    rna:L:804~807 595~598
    2958 3ol6:K
    (2.5Å)

    14 N/A URS000080E1D2 N/A synthetic
    construct

    32630
    21148772 Assembly3
    protein:I:1~461 695~701
    rna:J:595~613 690~701
    2959 3ol6:N
    (2.5Å)

    19 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly4
    protein:M:1~461 598~606
    rna:O:688~701 601~612
    rna:P:804~807 595~598
    2960 3ol6:O
    (2.5Å)

    14 N/A URS000080E1D2 N/A synthetic
    construct

    32630
    21148772 Assembly4
    protein:M:1~461 695~701
    rna:N:595~613 690~701
    2961 3ol7:B
    (2.7Å)

    18 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly1
    protein:A:1~461 598~606
    rna:C:688~702 600~612
    rna:D:804~806 596~598
    2962 3ol7:C
    (2.7Å)

    15 N/A URS000080E1BB N/A synthetic
    construct

    32630
    21148772 Assembly1
    protein:A:1~461 695,697~702
    rna:B:596~613 690~702
    MG:A:3006 701~702
    2963 3ol7:F
    (2.7Å)

    18 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly2
    protein:E:1~461 598~606
    rna:G:688~702 600~612
    rna:H:804~806 596~598
    2964 3ol7:G
    (2.7Å)

    15 N/A URS000080E1BB N/A synthetic
    construct

    32630
    21148772 Assembly2
    protein:E:1~461 695,697~702
    rna:F:596~613 690~702
    MG:E:3002 701~702
    2965 3ol7:J
    (2.7Å)

    16 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly3
    protein:I:1~461 598~606
    rna:K:688~702 600~612
    rna:L:804~807 597~598
    PEG:J:7003 605~606
    2966 3ol7:K
    (2.7Å)

    15 N/A URS000080E1BB N/A synthetic
    construct

    32630
    21148772 Assembly3
    protein:I:1~461 697~702
    rna:J:597~612 690~702
    2967 3ol7:N
    (2.7Å)

    16 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly4
    protein:M:1~461 598~606
    rna:O:688~702 600~612
    rna:P:804~807 597~598
    IPA:N:6020 606~607
    PEG:N:7004 605~606
    2968 3ol7:O
    (2.7Å)

    15 N/A URS000080E1BB N/A synthetic
    construct

    32630
    21148772 Assembly4
    protein:M:1~461 695,697~702
    rna:N:597~612 690~702
    2969 3ol8:B
    (2.75Å)

    17 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly1
    protein:A:1~461 598~604,606~607
    rna:C:688~702 600~612
    rna:D:805~807 597~598
    2970 3ol8:C
    (2.75Å)

    15 N/A URS000080E1BB N/A synthetic
    construct

    32630
    21148772 Assembly1
    protein:A:1~461 695,697~702
    rna:B:597~613 690~702
    MN:A:3008 701~702
    2971 3ol8:F
    (2.75Å)

    17 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly2
    protein:E:1~461 598~604,606~607
    rna:G:688~702 600~612
    rna:H:805~807 597~598
    2972 3ol8:G
    (2.75Å)

    15 N/A URS000080E1BB N/A synthetic
    construct

    32630
    21148772 Assembly2
    protein:E:1~461 695,697~702
    rna:F:597~613 690~702
    MN:E:3006 701~702
    2973 3ol8:J
    (2.75Å)

    17 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly3
    protein:I:1~461 598~607
    rna:K:688~702 600~612
    rna:L:805~808 597~598
    2974 3ol8:K
    (2.75Å)

    15 N/A URS000080E1BB N/A synthetic
    construct

    32630
    21148772 Assembly3
    protein:I:1~461 697~702
    rna:J:597~613 690~702
    MN:I:3004 701~702
    2975 3ol8:N
    (2.75Å)

    17 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly4
    protein:M:1~461 598~607
    rna:O:688~702 600~612
    rna:P:805~808 597~598
    2976 3ol8:O
    (2.75Å)

    15 N/A URS000080E1BB N/A synthetic
    construct

    32630
    21148772 Assembly4
    protein:M:1~461 697~702
    rna:N:597~613 690~702
    MN:M:3002 701~702
    2977 3ol9:B
    (2.25Å)

    18 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly1
    protein:A:1~461 598~606
    rna:C:688~702 600~612
    rna:D:804~806 596~598
    2978 3ol9:C
    (2.25Å)

    15 N/A URS000080E0FE N/A synthetic
    construct

    32630
    21148772 Assembly1
    protein:A:1~461 695,697~702
    rna:B:596~613 690~702
    2979 3ol9:F
    (2.25Å)

    18 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly2
    protein:E:1~461 598~606
    rna:G:688~702 600~612
    rna:H:804~806 596~598
    2980 3ol9:G
    (2.25Å)

    15 N/A URS000080E0FE N/A synthetic
    construct

    32630
    21148772 Assembly2
    protein:E:1~461 695,697~702
    rna:F:596~613 690~702
    2981 3ol9:J
    (2.25Å)

    19 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly3
    protein:I:1~461 598~607
    rna:K:688~702 600~612
    rna:L:804~807 595~598
    2982 3ol9:K
    (2.25Å)

    15 N/A URS000080E0FE N/A synthetic
    construct

    32630
    21148772 Assembly3
    protein:I:1~461 695,697~702
    rna:J:595~613 690~702
    2983 3ol9:N
    (2.25Å)

    19 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly4
    protein:M:1~461 598~607
    rna:O:688~702 600~612
    rna:P:804~807 595~598
    2984 3ol9:O
    (2.25Å)

    15 N/A URS000080E0FE N/A synthetic
    construct

    32630
    21148772 Assembly4
    protein:M:1~461 695,697~702
    rna:N:595~613 690~702
    2985 3ola:B
    (2.55Å)

    17 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly1
    protein:A:1~461 598~606
    rna:C:688~702 600~612
    rna:D:805~807 596~598
    2986 3ola:C
    (2.55Å)

    15 N/A URS000080E1BB N/A synthetic
    construct

    32630
    21148772 Assembly1
    protein:A:1~461 695~702
    rna:B:596~612 690~702
    2987 3ola:F
    (2.55Å)

    17 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly2
    protein:E:1~461 598~606
    rna:G:688~702 600~612
    rna:H:805~807 596~598
    2988 3ola:G
    (2.55Å)

    15 N/A URS000080E1BB N/A synthetic
    construct

    32630
    21148772 Assembly2
    protein:E:1~461 695~702
    rna:F:596~612 690~702
    2989 3ola:J
    (2.55Å)

    18 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly3
    protein:I:1~461 598~606
    rna:K:688~701 601~612
    rna:L:805~808 595~598
    2990 3ola:K
    (2.55Å)

    14 N/A URS000080E1D2 N/A synthetic
    construct

    32630
    21148772 Assembly3
    protein:I:1~461 695~701
    rna:J:595~612 690~701
    2991 3ola:N
    (2.55Å)

    18 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly4
    protein:M:1~461 598~606
    rna:O:688~701 601~612
    rna:P:805~808 595~598
    2992 3ola:O
    (2.55Å)

    14 N/A URS000080E1D2 N/A synthetic
    construct

    32630
    21148772 Assembly4
    protein:M:1~461 695~701
    rna:N:595~612 690~701
    2993 3olb:B
    (2.41Å)

    18 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly1
    protein:A:1~461 598~606
    rna:C:688~701 601~612
    rna:D:804~806 596~598
    2994 3olb:C
    (2.41Å)

    14 N/A URS000080E1D2 N/A synthetic
    construct

    32630
    21148772 Assembly1
    protein:A:1~461 696~701
    rna:B:596~613 690~701
    2995 3olb:F
    (2.41Å)

    18 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly2
    protein:E:1~461 598~606
    rna:G:688~701 601~612
    rna:H:804~806 596~598
    2996 3olb:G
    (2.41Å)

    14 N/A URS000080E1D2 N/A synthetic
    construct

    32630
    21148772 Assembly2
    protein:E:1~461 696~701
    rna:F:596~613 690~701
    2997 3olb:J
    (2.41Å)

    19 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly3
    protein:I:1~461 598~607
    rna:K:688~701 601~612
    rna:L:804~807 595~598
    2998 3olb:K
    (2.41Å)

    14 N/A URS000080E1D2 N/A synthetic
    construct

    32630
    21148772 Assembly3
    protein:I:1~461 695~701
    rna:J:595~613 690~701
    2999 3olb:N
    (2.41Å)

    19 N/A URS000080E368 N/A synthetic
    construct

    32630
    21148772 Assembly4
    protein:M:1~461 598~607
    rna:O:688~701 601~612
    rna:P:804~807 595~598
    3000 3olb:O
    (2.41Å)

    14 N/A URS000080E1D2 N/A synthetic
    construct

    32630
    21148772 Assembly4
    protein:M:1~461 695~701
    rna:N:595~613 690~701
    IPA:O:6009 698~699
    << < 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 > >>
    Go to page


    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.