SEQ2FUN

FURNA
Download all results in tab-seperated text for 19236 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    3001 3oxe:A
    (2.899Å)
    		 88 GO:0006545 (P) glycine biosynthetic pr... URS000080DF11 RF00504 Vibrio
    cholerae
    666    		 21145485 Assembly1
    GLY:A:89 32,34~36,68~69
    MN:A:109 8,80
    MN:A:101 34~35
    MN:A:112 17,19
    MN:A:102 32~33,66
    MN:A:103 22,75
    MN:A:104 74~76
    MN:A:105 70~71
    3002 3oxe:B
    (2.899Å)
    		 88 GO:0006545 (P) glycine biosynthetic pr... URS000080DF11 RF00504 Vibrio
    cholerae
    666    		 21145485 Assembly2
    GLY:B:89 32,34~35,68~69
    MN:B:120 74~76
    MN:B:121 78~79
    MN:B:122 34~35
    MN:B:125 18,20
    MN:B:127 70~72
    MN:B:129 32~33,66
    3003 3oxj:A
    (3.2Å)
    		 88 GO:0006545 (P) glycine biosynthetic pr... URS000080DF11 RF00504 Vibrio
    cholerae
    666    		 21145485 Assembly1
    GLY:A:89 32,34~36,68~69
    BA:A:204 79~80
    BA:A:205 22,75
    BA:A:211 18~19
    BA:A:214 69~71
    BA:A:222 8,80
    MG:A:101 34~35
    MG:A:102 32~33,66
    MG:A:104 75~76
    3004 3oxj:B
    (3.2Å)
    		 87 GO:0006545 (P) glycine biosynthetic pr... URS000080DF11 RF00504 Vibrio
    cholerae
    666    		 21145485 Assembly2
    GLY:B:89 32,34~36,68~69
    BA:B:208 79~80
    BA:B:216 17,20
    BA:B:218 60~61
    BA:B:223 8,80
    MG:B:111 32~33,66
    MG:B:115 74~76
    MG:B:116 70~71
    MG:B:110 34~35
    3005 3oxm:A
    (2.95Å)
    		 88 GO:0006545 (P) glycine biosynthetic pr... URS000080DF11 RF00504 Vibrio
    cholerae
    666    		 21145485 Assembly1
    GLY:A:89 32,34~36,68~69
    TL:A:204 8,80
    TL:A:205 69~72
    TL:A:206 41~43,62
    TL:A:210 78~79
    MG:A:101 34~35
    MG:A:102 32~33
    MG:A:103 22,75
    MG:A:104 75~76
    3006 3oxm:B
    (2.95Å)
    		 88 GO:0006545 (P) glycine biosynthetic pr... URS000080DF11 RF00504 Vibrio
    cholerae
    666    		 21145485 Assembly2
    GLY:B:89 32,34~36,68~69
    TL:B:201 18,20
    TL:B:203 8,80
    TL:B:208 6,8
    TL:B:209 1~2
    MG:B:110 74~76
    MG:B:111 32~33,66
    MG:B:121 18,20
    MG:B:123 70~72
    3007 3p22:A
    (2.501Å)
    		 40 N/A URS000080DEE3 N/A synthetic
    construct
    32630    		 21109672 Assembly1
    rna:B:1~9 7~13,27~31,33~36
    3008 3p22:C
    (2.501Å)
    		 40 N/A URS000080DEE3 N/A synthetic
    construct
    32630    		 21109672 Assembly2
    rna:D:1~8 7~13,27~31,33~36
    3009 3p22:E
    (2.501Å)
    		 40 N/A URS000080DEE3 N/A synthetic
    construct
    32630    		 21109672 Assembly3
    rna:F:1~9 7~13,27~31,33~36
    3010 3p22:G
    (2.501Å)
    		 40 N/A URS000080DEE3 N/A synthetic
    construct
    32630    		 21109672 Assembly4
    rna:H:1~8 6~13,27~31,33~36
    3011 3p49:A
    (3.55Å)
    		 169 GO:0006545 (P) glycine biosynthetic pr... URS000080DF90 RF00504 Fusobacterium
    polymorphum
    76857    		 21439473 Assembly1
    protein:B:6~97 724~729,733
    MG:A:735 51~53
    MG:A:737 142~144
    MG:A:739 110~111,138
    MG:A:740 35~36
    MG:A:741 42,45
    MG:A:742 146~148
    MG:A:743 112~113,137
    MG:A:744 37~38
    MG:A:749 119~120
    GLY:A:745 35,39,49~50
    GLY:A:746 110,114,140~141
    3012 3p59:A
    (2.1793Å)
    		 15 N/A URS000080DE90 N/A synthetic
    construct
    32630    		 21464284 Assembly1
    rna:B:104~113 50~53,58~60
    rna:D:104~113 46~50
    NCO:A:1 47~49
    3013 3p59:B
    (2.1793Å)
    		 10 N/A URS000080DF2E N/A synthetic
    construct
    32630    		 21464284 Assembly1
    rna:A:46~60 107~113
    rna:G:46~60 104~107
    3014 3p59:C
    (2.1793Å)
    		 15 N/A URS000080DE90 N/A synthetic
    construct
    32630    		 21464284 Assembly1
    rna:D:104~113 50~53,58~60
    rna:F:104~113 46~50
    NCO:C:1 48~49
    NCO:C:61 53~54
    3015 3p59:D
    (2.1793Å)
    		 10 N/A URS000080DF2E N/A synthetic
    construct
    32630    		 21464284 Assembly1
    rna:A:46~60 104~107
    rna:C:46~60 108,110~113
    NCO:D:1 106~107
    3016 3p59:E
    (2.1793Å)
    		 15 N/A URS000080DE90 N/A synthetic
    construct
    32630    		 21464284 Assembly1
    rna:F:104~113 50~52,55,57~60
    rna:H:104~113 47~50
    NCO:E:1 48~49
    3017 3p59:F
    (2.1793Å)
    		 10 N/A URS000080DF2E N/A synthetic
    construct
    32630    		 21464284 Assembly1
    rna:C:46~60 104~107
    rna:E:46~60 108~113
    NCO:F:1 105~106
    3018 3p59:G
    (2.1793Å)
    		 13 N/A URS000080DE90 N/A synthetic
    construct
    32630    		 21464284 Assembly1
    rna:B:104~113 46~50
    rna:H:104~113 50~53,58~60
    NCO:G:1 47~49
    3019 3p59:H
    (2.1793Å)
    		 10 N/A URS000080DF2E N/A synthetic
    construct
    32630    		 21464284 Assembly1
    rna:E:46~60 104~107
    rna:G:46~60 108~113
    NCO:H:1 105~106
    3020 3pdr:A
    (1.853Å)
    		 161 GO:0010468 (P) regulation of gene expr...
    GO:0032026 (P) response to magnesium ion    		 URS000080E29A RF00380 Bacillus
    subtilis
    1423    		 21315082 Assembly2
    K:A:1 27~29,155,157~158
    K:A:2 66~67,74~75,106~107
    MN:A:176 100,102~104
    MN:A:177 23,100
    MN:A:178 24~25
    MN:A:6 80~81
    MN:A:7 117~119
    MN:A:9 35~36
    MN:A:10 106~107
    MN:A:13 127~129
    3021 3pdr:X
    (1.853Å)
    		 161 GO:0010468 (P) regulation of gene expr...
    GO:0032026 (P) response to magnesium ion    		 URS000080E29A RF00380 Bacillus
    subtilis
    1423    		 21315082 Assembly1
    K:X:1 27~29,155,157~158
    K:X:2 66~67,75,106~107
    K:X:3 25,73
    MN:X:176 100,102~104
    MN:X:177 23,100
    MN:X:178 24~25
    MN:X:7 117~119
    MN:X:9 35~36
    MN:X:10 106~107
    MN:X:13 127~129
    MN:X:14 30~31
    MN:X:180 46,126
    3022 3pgw:N
    (4.4Å)
    		 163 GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0005685 (C) U1 snRNP    		 URS000032B6B6 RF00003 Homo
    sapiens
    9606    		 21113136
    121

    M319_0.6

    1184

    1202

    518

    s52

    509

    1031

    760
    3023 3pgw:R
    (4.4Å)
    		 163 GO:0030627 (F) pre-mRNA 5'-splice site...
    GO:0000395 (P) mRNA 5'-splice site rec...
    GO:0005685 (C) U1 snRNP    		 URS000032B6B6 RF00003 Homo
    sapiens
    9606    		 21113136
    121

    M319_0.6

    1184

    1202

    518

    s52

    509

    1031

    760
    3024 3php:A

    		 23 N/A URS000080E12C N/A synthetic
    construct
    32630    		 9857204
    3025 3pio:X
    (3.2473Å)
    		 2657 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02540
    RF02541    		 Deinococcus
    radiodurans
    R1
    =
    ATCC
    13939
    =
    DSM
    20539
    243230    		 21282615 Assembly1
    rna:Y:3~122 874~876,927~931,969
    protein:A:21~273 704~707,742,777,786~787,791~79
    5,797,1383,1506~1507,1516~1517
    ,1582~1585,1764,1779~1783,1787
    ~1788,1790~1791,1794,1796,1804
    ~1805,1808~1813,1816~1820,1835
    ,1884~1885,1954,2056,2069,2200
    ~2202,2205~2206,2218,2569~2570
    ,2577~2579
    protein:B:1~205 583,757,1141,1671~1676,1687~16
    88,1692,1976~1977,2015,2033~20
    36,2485,2490~2493,2550~2551,25
    53~2554,2557~2559,2597~2600,26
    12,2614~2616,2658~2661,2703~27
    04,2709~2711,2751~2753,2764~27
    67,2786~2787,2795~2798,2805~28
    06,2809
    protein:C:2~195 37,39,331~332,334,453~456,460~
    464,480,595~599,610~611,616~61
    8,626,629,631,672~673,682,684,
    687~688,814,1216,1218,1257,126
    0~1261,1268~1271,2042~2044,242
    3
    protein:D:3~179 2278,2282~2285,2288~2295
    protein:E:5~175 2509~2510,2638,2646~2647,2723~
    2725,2727~2728,2737~2738
    protein:F:74~136 1069~1071,1074~1076,1087~1088,
    1090~1091,1099
    protein:G:30~171 7~8,538~539,547,566~567,1006,1
    016~1018,1023,1033,1142~1143,1
    148~1152,2494,2619,2621,2760
    protein:H:1~134 1682~1685,1935,1978~1979,2540~
    2543,2545,2627~2629,2652~2655,
    2662~2664
    protein:I:11~144 173,228,575~577,596,607~609,61
    3~615,636~638,642~644,647~648,
    673~675,679,683~684,819~820,82
    4~826,844~846,953~954,1203,121
    8,1256,2371~2372,2394~2395,240
    7~2408
    protein:J:6~141 876~877,883~884,918~919,921~92
    3,964~969,971,1041,1086,2229~2
    230,2255~2257,2438,2446,2462~2
    464,2473~2475
    protein:K:3~115 1288~1292,1300~1301,1468~1470,
    1666~1668,1985,1992,2669,2680~
    2681,2685~2688,2693,2702,2792,
    2795~2797,2813~2815,2825~2827,
    2844,2848,2855~2857
    protein:L:8~111 2272~2274,2313,2355,2357
    protein:M:2~109 1744~1745,2661,2698~2699,2804,
    2822~2824,2842,2850~2851
    protein:N:2~118 17~19,29,456~457,459,542~545,5
    63,570,572~573,589~590,592~593
    ,825,986,1005~1008,1019~1022,1
    162~1164,1166~1167,1229~1230,1
    261,1264~1265,2002,2004
    protein:O:5~98 573~574,827~828,984,986,1001,1
    003~1004,1007,1172~1173,1201~1
    202,1234~1238
    protein:P:8~133 23~26,319,497~501,503~507,511~
    512,514,518,527~529,759~761,76
    4,1224,1246~1247,1274~1275,127
    9,1335~1337,1630~1631,1992~199
    3,1995~1997
    protein:Q:2~94 57,63~64,1324~1325,1348,1350~1
    355,1404~1406,1412,1613~1616,1
    618
    protein:R:4~113 34,83~85,100,308~310,320~321,3
    37~340,347~349,489,491,494
    protein:S:1~175 1051,1129
    protein:T:12~85 869~871,933~935,2240~2241,2250
    ~2251,2256~2258,2310,2315,2331
    ~2335,2343~2344,2363,2366
    protein:U:8~79 164~166,177~178,393~394,399~40
    1,409~413,1377,1801,2064,2074,
    2209~2210,2212,2374~2375,2411
    protein:V:2~66 60,71~72,75~76,94~95,109
    protein:W:1~55 863,940~943,980,999~1000,1168~
    1169,1198
    protein:Z:3~59 14~17,526~527,760,1275~1277,12
    79,1998~2002,2004,2028~2029,25
    56,2590,2592,2594,2603,2790~27
    91,2858~2862
    protein:1:2~54 2262~2265,2323~2327,2349~2350,
    2369,2378~2379,2397,2400
    protein:2:1~46 54,122~124,469~470,475~479,695
    ,697,699~700,765,783,801,1322~
    1323,1628~1629,1635~1636
    protein:3:6~64 227,603,659~661,847~848,2327~2
    329,2338~2341,2362,2369~2372,2
    399~2401
    protein:4:1~37 1041~1045,1135~1136,2446,2505~
    2507,2518,2722~2723,2733~2737
    LMA:X:2881 759,2041,2045,2484,2590
    MG:X:2884 2555~2556
    MG:X:2886 1281,1989
    MG:X:2887 1282,1988
    MG:X:2889 2690,2692
    MG:X:2890 2690,2692,2694
    MG:X:2894 743~744
    MG:X:2896 2039~2040
    MG:X:2897 2426~2427,2478
    MG:X:2905 956~957
    MG:X:2907 2247~2248
    MG:X:2922 2043,2481
    MG:X:2924 1771,1773~1774
    MG:X:2927 2561~2562
    MG:X:2929 1681~1682
    MG:X:2940 1687~1688
    MG:X:2943 1681,1975
    MG:X:2944 2552,2554
    MG:X:2949 2594~2595
    MG:X:2955 2409~2411
    MG:X:2957 2661,2701
    MG:X:2961 169,2222
    MG:X:2962 1034~1037
    MG:X:2965 800,803
    MG:X:2968 1690,2531
    MG:X:2969 541,2018~2019
    MG:X:2972 460,483
    MG:X:2974 1311,1656
    MG:X:2975 1327~1328,1345
    MG:X:2976 462,465
    MG:X:2980 1927~1928
    MG:X:2982 595,1262
    MG:X:2983 1278,2594
    MG:X:2984 839~840,2408~2409
    MG:X:2987 1017,1020~1021
    MG:X:2989 1001,1200
    MG:X:2996 1619~1620
    MG:X:3000 1407,1620
    MG:X:3002 1284~1285,1664~1665
    MG:X:3006 1404~1405
    MG:X:3007 753,1774~1775
    MG:X:3008 959,974
    MG:X:3009 1355,1618
    MG:X:3016 585,2482
    MG:X:3020 797,2567
    MG:X:3023 1009~1010,1164
    MG:X:3025 839,2406,2408
    MG:X:3027 229,680
    MG:X:3030 395,399
    MG:X:3031 1391~1393
    NA:X:3035 813,815
    NA:X:3038 540,2005
    NA:X:3039 992~993
    NA:X:3042 1827,1953
    NA:X:3051 2527~2528
    NA:X:3052 741~742
    NA:X:3058 982,985
    NA:X:3061 1282,2591
    NA:X:3064 1358,1396
    NA:X:3065 1449~1450
    NA:X:3066 1819~1820
    NA:X:3067 171~172,174~175
    NA:Z:61 2590~2591
    K:X:3070 2015,2038,2432~2433,2478
    K:X:3071 1244~1245
    K:X:3072 608~609
    K:X:3073 1280,1992~1993
    K:X:3074 1467~1468,1473
    K:X:3076 2618~2619
    K:X:3077 574~575,823,1266
    K:X:3078 1316~1317,1623
    K:X:3079 1887,2574,2576
    K:X:3080 1206~1207
    K:X:3081 842,844~845,955~956
    K:X:3082 503~504
    3026 3pio:Y
    (3.2473Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E04E RF00001 Deinococcus
    radiodurans
    R1
    =
    ATCC
    13939
    =
    DSM
    20539
    243230    		 21282615 Assembly1
    rna:X:1~2876 80~83,92,100~103
    protein:D:3~179 33,43~45,47,57~59
    protein:J:6~141 80,92~93
    protein:L:8~111 8~9,11,30~31,39~40,49~53,116~1
    19
    protein:S:1~175 75,77~78,94,106~107
    protein:T:12~85 13~14
    3027 3pip:X
    (3.45Å)
    		 2644 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02540
    RF02541    		 Deinococcus
    radiodurans
    R1
    =
    ATCC
    13939
    =
    DSM
    20539
    243230    		 21282615 Assembly1
    rna:Y:3~122 874~876,927~931,969
    protein:A:21~273 704~707,742,777,786,791~795,79
    7,1383,1506~1507,1516~1517,158
    2~1585,1779~1783,1787~1788,179
    0~1791,1794,1796~1797,1804~180
    6,1808,1810~1813,1816~1820,183
    5,1884~1886,1955,2069,2186~218
    7,2200~2202,2205~2206,2218,256
    9~2570,2577~2579
    protein:B:1~205 583,756,1141,1671~1676,1692,19
    76,1980,2033~2038,2485,2490~24
    92,2550~2551,2553~2554,2557~25
    59,2590,2597~2600,2612,2614~26
    17,2656,2658~2662,2703~2704,27
    09~2711,2713~2714,2751~2753,27
    64~2767,2786~2787,2795~2798,28
    05~2806
    protein:C:2~195 37~40,331~334,452,454~456,460~
    463,480,594,596~597,599,610~61
    1,617~618,626~627,629~630,673,
    682,684~688,812,814,1216,1257,
    1259~1261,1268~1270,2042~2044,
    2423
    protein:D:3~179 2278,2282~2285,2288~2295
    protein:E:5~175 1046,2508~2510,2632,2636~2638,
    2646~2647,2724~2728,2731,2737~
    2738
    protein:F:74~136 1069~1071,1073~1076,1088,1090~
    1092,1099
    protein:G:30~171 6~7,538~539,547~548,566~567,10
    06,1016~1018,1023,1033,1142~11
    43,1148~1151,2023,2494,2618~26
    21,2760
    protein:H:1~134 1682~1686,1935,1978~1979,2540~
    2543,2627~2628,2652~2655,2662~
    2664
    protein:I:11~144 221~222,575~577,596,607~609,61
    4~615,636~638,642~643,647~648,
    673~676,678~680,684,817~821,82
    4~827,844~846,954,1203~1204,12
    17~1218,1256,1258,2338,2371~23
    72,2383,2394~2395,2407,2427
    protein:J:6~141 876,883~884,886,917~923,964~96
    9,971,2254~2257,2446~2447,2462
    ~2464,2473~2475
    protein:K:3~115 1288~1292,1298,1300~1301,1469~
    1470,1666~1668,1985,1992,2669,
    2680~2681,2685~2687,2693,2702,
    2791~2792,2795,2797,2813~2815,
    2825~2827,2848,2855~2857
    protein:L:8~111 2271~2275,2313,2355~2357
    protein:M:2~109 1744~1745,2661,2663,2698~2699,
    2804,2820,2822~2824,2842,2850~
    2851
    protein:N:2~118 17~19,28~29,456~458,461,525,54
    2~544,546,570,572~573,589~593,
    825,986~987,1004~1008,1020~102
    2,1162~1167,1213,1228,1230,126
    1,1264~1265,2002~2004
    protein:O:5~98 573~574,827~828,1003~1004,1171
    ~1173,1201~1202,1234~1239
    protein:P:8~133 24~25,319,496~498,500~507,511~
    514,518,528~530,759~761,764,12
    24,1247,1274~1275,1279,1335~13
    37,1630~1631,1992~1997
    protein:Q:2~94 57,63~64,1324,1348~1349,1351~1
    355,1404,1412,1613~1615,1618
    protein:R:4~113 34,83~86,307~309,320~321,337~3
    38,340,347~349,489,491~494
    protein:S:1~175 888~889,1051,1129
    protein:T:12~85 869~871,934~935,2236~2237,2240
    ~2241,2250,2257~2258,2309~2310
    ,2315,2331~2335,2342~2345,2363
    ,2365~2366
    protein:U:8~79 166,393~394,400~401,409~411,41
    3,1378,2063~2065,2074,2183,220
    9~2210,2212
    protein:V:2~66 60,71~72,75~76,94~95,109
    protein:W:1~55 862~865,940~943,980~981,999~10
    00,1169,1198
    protein:Z:3~59 14~17,526~527,760,1275~1277,12
    79,1998~2000,2003~2004,2028~20
    30,2556,2590~2592,2594,2790~27
    91,2858~2862
    protein:1:2~54 2262~2265,2323~2326,2349~2351,
    2369,2378~2379,2397~2398,2400~
    2401
    protein:2:1~46 54,116,122~124,469,476~478,696
    ~697,699~700,765,783~784,801~8
    02,1322~1323,1381,1628~1629,16
    35~1636
    protein:3:6~64 219~220,222~224,226~229,640,65
    9~661,847,2327~2328,2338~2341,
    2370~2373,2397~2401
    protein:4:1~37 1041~1045,1135~1136,2444~2447,
    2456,2505~2507,2518,2722,2735~
    2737
    LC2:X:2881 2044,2430~2431,2483~2485,2564
    LMA:X:2882 759,2041,2045,2482,2484,2589~2
    590
    MG:X:2885 2555~2556
    MG:X:2887 1281,1989,2031
    MG:X:2888 1282,1988
    MG:X:2891 2690,2692
    MG:X:2892 2692,2694
    MG:X:2897 743,776
    MG:X:2899 2039~2040
    MG:X:2900 2426~2427
    MG:X:2909 956~957
    MG:X:2911 2246,2248
    MG:X:2917 2512~2513
    MG:X:2923 1000~1001,1168~1169
    MG:X:2928 2425,2481
    MG:X:2930 1771,1773
    MG:X:2933 2561~2562
    MG:X:2934 583,585
    MG:X:2945 2705~2706
    MG:X:2947 1687~1688
    MG:X:2950 1681~1682
    MG:X:2951 2552,2554
    K:X:2954 2015,2038,2432~2433
    K:X:2955 1244~1245
    K:X:2957 1992~1993
    NA:X:2958 2217,2220
    NA:X:2960 1693~1694,1976
    NA:X:2961 812~813
    3028 3pip:Y
    (3.45Å)
    		 120 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E04E RF00001 Deinococcus
    radiodurans
    R1
    =
    ATCC
    13939
    =
    DSM
    20539
    243230    		 21282615 Assembly1
    rna:X:1~2876 80~83,92,100~103
    protein:D:3~179 32~33,43~47,56~59
    protein:J:6~141 92~94
    protein:L:8~111 8~11,30~31,39~40,49~53,116~117
    protein:S:1~175 75,77~78,94,106~108
    3029 3pla:G
    (3.15Å)
    		 35 N/A URS000080DD2E N/A synthetic
    construct
    32630    		 21270896 Assembly1
    protein:A:3~377 24,27~29,35
    protein:B:3~377 12~18,20~23
    protein:C:7~128 30~31
    protein:D:7~128 10~12
    protein:E:5~231 23~27
    rna:H:9~40 1~10,12~16,29~33
    rna:I:1~10 18~27
    3030 3pla:H
    (3.15Å)
    		 32 N/A URS000080DD2E N/A synthetic
    construct
    32630    		 21270896 Assembly1
    protein:A:3~377 12~23
    protein:B:3~377 24,27~29
    protein:C:7~128 10~12
    protein:D:7~128 29~31
    protein:F:5~231 24~27
    rna:G:1~35 9~10,12~16,29~40
    rna:J:1~10 18~27
    3031 3pla:I
    (3.15Å)
    		 10 N/A URS000080E062 N/A synthetic
    construct
    32630    		 21270896 Assembly1
    protein:A:3~377 1~2
    protein:B:3~377 8~10
    protein:E:5~231 2~6
    rna:G:1~35 1~10
    3032 3pla:J
    (3.15Å)
    		 10 N/A URS000080E062 N/A synthetic
    construct
    32630    		 21270896 Assembly1
    protein:A:3~377 8~10
    protein:F:5~231 2~6
    rna:H:9~40 1~10
    3033 3pla:N
    (3.15Å)
    		 31 N/A URS000080DD2E N/A synthetic
    construct
    32630    		 21270896 Assembly2
    protein:K:3~377 27~29
    protein:L:7~128 30~31
    protein:M:5~231 24~27
    protein:K-2:3~377 8,12~23
    protein:L-2:7~128 10~12
    rna:O:1~10 18~27
    rna:N-2:6~36 7~10,12~15,29~35
    3034 3pla:O
    (3.15Å)
    		 10 N/A URS000080E062 N/A synthetic
    construct
    32630    		 21270896 Assembly2
    protein:M:5~231 2~7
    protein:K-2:3~377 7~10
    rna:N:6~36 1~10
    3035 3po2:P
    (3.3Å)
    		 15 N/A URS000080E1FB N/A synthetic
    construct
    32630    		 21346759 Assembly1
    protein:A:3~1454 11,13~17
    protein:B:20~1224 10,12
    dna:T:5~23 6~10
    3036 3ptx:R
    (3.0Å)
    		 45 N/A URS000080E1AF N/A synthetic
    construct
    32630    		 21177817 Assembly1
    protein:A:2~422 29~36
    protein:B:2~422 20~27
    protein:C:2~422 11~18
    protein:D:2~422 2~9
    protein:E:2~422 38~45
    rna:R-2:1~45 1,44~45
    3037 3pu0:R
    (3.09Å)
    		 45 N/A URS000080E318 N/A synthetic
    construct
    32630    		 21177817 Assembly1
    protein:A:2~422 29~36
    protein:B:2~422 20~27
    protein:C:2~422 11~18
    protein:D:2~422 2~10
    protein:E:2~422 38~45
    rna:R-2:1~45 1,44~45
    IUM:R:539 32~33
    IUM:R:540 40,42
    3038 3pu1:R
    (3.14Å)
    		 45 N/A URS000080E13B N/A synthetic
    construct
    32630    		 21177817 Assembly1
    protein:A:2~422 29~33,35~36
    protein:B:2~422 19~24,26~27
    protein:C:2~422 11~18
    protein:D:2~422 2~9
    protein:E:2~422 38~45
    rna:R-2:1~45 1,44~45
    3039 3pu4:R
    (3.0Å)
    		 45 N/A URS000080E17E N/A synthetic
    construct
    32630    		 21177817 Assembly1
    protein:A:2~422 29~33,35~36
    protein:B:2~422 20~24,26~27
    protein:C:2~422 11~15,17
    protein:D:2~422 2~6,8~10
    protein:E:2~422 38~40,42,44~45
    rna:R-2:1~45 1,44~45
    3040 3q1q:B
    (3.8Å)
    		 347 EC:3.1.26.5 ribonuclease P
    GO:0004526 (F) ribonuclease P activity
    GO:0008033 (P) tRNA processing
    GO:0030680 (C) dimeric ribonuclease P ...    		 URS000080E347 RF00010 Thermotoga
    maritima
    2336    		 21076397 Assembly1
    protein:A:6~117 18~22,267,302~308,320~321
    rna:C:1~86 50~53,111~112,156,207~208,220~
    223,230,263~266,323~324,330
    MG:B:903 50~52
    3041 3q1q:C
    (3.8Å)
    		 86 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DFE4 RF00005 Thermotoga
    maritima
    2336    		 21076397 Assembly1
    rna:B:1~347 1~3,19,63~64,66,68,71~72,74~75
    ,82~86
    MG:C:901 83~84
    3042 3q1r:B
    (4.21Å)
    		 347 EC:3.1.26.5 ribonuclease P
    GO:0004526 (F) ribonuclease P activity
    GO:0008033 (P) tRNA processing
    GO:0030680 (C) dimeric ribonuclease P ...    		 URS000080E347 RF00010 Thermotoga
    maritima
    2336    		 21076397 Assembly1
    protein:A:6~117 18~22,267,302~304,306~308,320~
    321
    rna:C:1~86 50~53,111~112,156,207~208,220~
    223,230,263~266,323~324,330~33
    1
    MG:B:349 50~52
    3043 3q1r:C
    (4.21Å)
    		 86 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DFE4 RF00005 Thermotoga
    maritima
    2336    		 21076397 Assembly1
    rna:B:1~347 1~3,19,63~64,66,68,71,74~75,82
    ~86
    3044 3q3z:A
    (2.51Å)
    		 75 GO:0035438 (F) cyclic-di-GMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000080E282 RF01786 Clostridium
    acetobutylicum
    1488    		 21518891 Assembly2
    C2E:A:2 13~14,61,69~70,73~74
    MG:A:82 61~63
    MG:A:6 60,66
    MG:A:86 61,67
    3045 3q3z:V
    (2.51Å)
    		 75 GO:0035438 (F) cyclic-di-GMP binding
    GO:0010468 (P) regulation of gene expr...    		 URS000080E282 RF01786 Clostridium
    acetobutylicum
    1488    		 21518891 Assembly1
    C2E:V:1 13~14,61,69~70,73~74
    MG:V:4 61~63
    MG:V:83 60,66
    3046 3q50:A
    (2.75Å)
    		 33 N/A URS000080E32E N/A synthetic
    construct
    32630    		 21592962
    19261617    		 Assembly1
    PRF:A:34 5,11,15~16,29
    3047 3q51:A
    (2.85Å)
    		 32 N/A URS000080E32E N/A synthetic
    construct
    32630    		 21592962
    19261617
    3048 3qjj:Q
    (2.8049Å)
    		 12 N/A URS000080E2BC N/A synthetic
    construct
    32630    		 N/A Assembly2
    protein:A:-3~239 1,3~12
    3049 3qjj:R
    (2.8049Å)
    		 12 N/A URS000080E2BC N/A synthetic
    construct
    32630    		 N/A Assembly1
    protein:B:0~239 1~11
    3050 3qjl:R
    (2.7009Å)
    		 12 N/A URS000080DF86 N/A synthetic
    construct
    32630    		 N/A Assembly1
    protein:A:0~239 5~12
    protein:B:0~239 1~7
    rna:X:1~12 3,6
    3051 3qjl:X
    (2.7009Å)
    		 12 N/A URS000080DF86 N/A synthetic
    construct
    32630    		 N/A Assembly1
    protein:A:0~239 1~7,9
    protein:B:0~239 5~12
    rna:R:1~12 3,6
    3052 3qrq:B
    (3.194Å)
    		 19 N/A N/A N/A N/A 21572444 Assembly1
    protein:A:-1~211 4~7
    3053 3qrr:B
    (3.099Å)
    		 18 N/A URS00021ED985 N/A synthetic
    construct
    32630    		 21572444 Assembly1
    protein:A:-1~211 4~7
    3054 3qsy:D
    (3.2Å)
    		 77 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00001BBAFC RF00005 Escherichia
    coli
    562    		 23291527 Assembly1
    protein:A:1~415 1~4,11,24~25,71~76
    3055 3r1d:A
    (1.45Å)
    		 11 N/A URS00021ED9B0 N/A synthetic
    construct
    32630    		 21596781 Assembly1
    rna:B:1~11 1~11
    SO4:A:14 2~3
    3056 3r1d:B
    (1.45Å)
    		 11 N/A URS00021ED9B0 N/A synthetic
    construct
    32630    		 21596781 Assembly1
    rna:A:1~11 1~11
    SO4:B:13 2~3
    3057 3r1d:C
    (1.45Å)
    		 11 N/A URS00021ED9B0 N/A synthetic
    construct
    32630    		 21596781 Assembly2
    rna:D:1~11 1~11
    3058 3r1d:D
    (1.45Å)
    		 11 N/A URS00021ED9B0 N/A synthetic
    construct
    32630    		 21596781 Assembly2
    rna:C:1~11 1~11
    SO4:D:12 2~3
    3059 3r1d:E
    (1.45Å)
    		 11 N/A URS00021ED9B0 N/A synthetic
    construct
    32630    		 21596781 Assembly3
    rna:E-2:1~11 1~11
    SO4:E:12 2~3
    SO4:E:13 5~6
    3060 3r1h:C
    (3.15Å)
    		 130 N/A URS000080E303 N/A synthetic
    construct
    32630    		 21857665 Assembly1
    protein:A:7~98 57,1001,1005~1011,1014~1015
    rna:B:-7~-1 1,13~19,22,26~27,29
    CA:C:1019 31~32
    CA:C:1020 70~72,106
    CA:C:1021 3~4
    CA:C:1022 46~47,74
    CA:C:1029 29~30
    CA:C:1031 98~99
    3061 3r1h:F
    (3.15Å)
    		 130 N/A URS000080E303 N/A synthetic
    construct
    32630    		 21857665 Assembly2
    protein:D:6~98 1001,1005~1011,1014~1015
    rna:E:-7~-1 1,13~19,22,27,29
    CA:F:1019 31~32
    CA:F:1020 70~72,106
    CA:F:1021 26,28
    CA:F:1022 47,74
    CA:F:1023 4~6
    CA:F:1027 29~30
    3062 3r1l:C
    (3.125Å)
    		 130 N/A URS000080E303 N/A synthetic
    construct
    32630    		 21857665 Assembly1
    protein:A:7~98 57,1001,1006~1011,1014~1015
    rna:B:-7~-1 1,13~19,22,26~27
    MG:C:1019 31~32
    MG:C:1020 1~2
    MG:C:1021 70,72,106
    MG:C:1031 4,114~115
    MG:C:1036 41,44
    MG:C:1040 92~93
    MG:C:1041 29~30
    3063 3r1l:F
    (3.125Å)
    		 130 N/A URS000080E303 N/A synthetic
    construct
    32630    		 21857665 Assembly2
    protein:D:6~98 57,1001,1005~1011,1014~1015
    rna:E:-7~-1 1,13~19,22,26~27
    MG:F:1019 31~32
    MG:F:1020 1~2
    MG:F:1021 70~72,106
    MG:F:1028 4,6
    MG:F:1029 3~4
    MG:F:1030 26,28
    MG:F:1032 35,76
    MG:F:1036 41~43
    3064 3r2c:S
    (1.902Å)
    		 10 N/A URS000080DF91 N/A Aquifex
    aeolicus
    63363    		 21652641 Assembly2
    protein:B:1~137 1~9
    PEG:S:13 2,5
    PEG:S:14 4,6
    3065 3r2d:R
    (2.199Å)
    		 12 N/A URS000080DF91 N/A Aquifex
    aeolicus
    63363    		 21652641 Assembly1
    protein:J:4~82 8~9
    rna:S:5~12 2,5~10
    3066 3r4f:A
    (3.5Å)
    		 66 N/A URS000080E05F RF00044 synthetic
    construct
    32630    		 21471452 Assembly1
    MG:A:202 26,29
    MG:A:206 8~9
    3067 3r9w:B
    (2.05Å)
    		 34 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080E021 RF01960
    RF01959    		 synthetic
    construct
    32630    		 21646538
    19706445
    10411886    		 Assembly1
    protein:A:0~301 1524~1525,1529~1538
    ACT:B:504 1531~1532
    3068 3r9x:C
    (2.8Å)
    		 35 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DE4E RF01959
    RF00177
    RF01960    		 synthetic
    construct
    32630    		 21646538
    19706445
    10411886    		 Assembly1
    protein:A:0~301 1506,1524,1529~1538
    protein:B:13~247 1514,1527
    3069 3rg5:A
    (2.0Å)
    		 86 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000624339 RF01852
    RF00005    		 Mus
    musculus
    10090    		 21629646 Assembly1
    GOL:A:74 10,26
    3070 3rg5:B
    (2.0Å)
    		 86 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS0000624339 RF01852
    RF00005    		 Mus
    musculus
    10090    		 21629646 Assembly2
    GOL:B:74 30~31
    3071 3rkf:A
    (2.5Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080DFAE RF00167 Bacillus
    subtilis
    1423    		 21890900 Assembly1
    DX4:A:91 21~22,47,51~52,74~75
    NCO:A:101 47,50
    NCO:A:102 31~32,66
    NCO:A:103 55~57
    NCO:A:104 15,79~80
    NCO:A:105 60~62
    NCO:A:110 37~38
    3072 3rkf:B
    (2.5Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080DFAE RF00167 Bacillus
    subtilis
    1423    		 21890900 Assembly2
    DX4:B:91 21~22,52,74~75
    NCO:B:101 47,50
    NCO:B:102 30~32,66
    NCO:B:103 56,69
    NCO:B:106 21~22
    3073 3rkf:C
    (2.5Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080DFAE RF00167 Bacillus
    subtilis
    1423    		 21890900 Assembly3
    DX4:C:91 21~22,47,50~52,74
    NCO:C:101 46~47,50
    NCO:C:102 30~32,66
    NCO:C:103 56,69
    NCO:C:106 21~22
    3074 3rkf:D
    (2.5Å)
    		 67 GO:0009113 (P) purine nucleobase biosy... URS000080DFAE RF00167 Bacillus
    subtilis
    1423    		 21890900 Assembly4
    DX4:D:91 21~22,47,51~52,74
    NCO:D:101 46,50
    NCO:D:102 31~32,66
    NCO:D:103 55~56
    NCO:D:104 15,79
    NCO:D:105 61~62
    NCO:D:108 27,67~68
    3075 3rw6:F
    (2.3Å)
    		 62 N/A URS000080DD81 N/A synthetic
    construct
    32630    		 21822283 Assembly2
    protein:B:117~360 13~16,20,30~34,50~51,54
    3076 3rw6:H
    (2.3Å)
    		 62 N/A URS000080DD81 N/A synthetic
    construct
    32630    		 21822283 Assembly1
    protein:A:118~362 11,13~15,32~34,50~51,54
    3077 3s4p:A
    (2.56Å)
    		 21 N/A URS000080DF2F N/A synthetic
    construct
    32630    		 21905229 Assembly1
    rna:B:22~42 1~14,17~21
    JS6:A:50 13~17
    JS6:B:51 3~6
    3078 3s4p:B
    (2.56Å)
    		 21 N/A URS000080DF2F N/A synthetic
    construct
    32630    		 21905229 Assembly1
    rna:A:1~21 22~35,38~42
    JS6:A:50 25~27
    JS6:B:51 34~39
    3079 3s7c:A
    (1.1Å)
    		 27 N/A URS000080E28F N/A synthetic
    construct
    32630    		 22273279
    3080 3s8u:A
    (1.2Å)
    		 27 N/A URS000080DEF4 N/A Escherichia
    coli
    562    		 22273279
    3081 3sd3:A
    (1.95Å)
    		 89 GO:0046653 (P) tetrahydrofolate metabo... URS000080DFDF RF01831 Streptococcus
    mutans
    1309    		 21906956 Assembly1
    IRI:A:90 59,61
    IRI:A:92 77~78
    IRI:A:93 32,42
    FFO:A:3631 7~8,42,44,79~80
    3082 3siu:C
    (2.626Å)
    		 28 N/A URS000080E193 N/A Homo
    sapiens
    9606    		 21784869 Assembly1
    protein:A:4~128 34~37,47~48
    protein:B:86~332 36~37,40~42,44~47
    3083 3siu:F
    (2.626Å)
    		 28 N/A URS000080E193 N/A Homo
    sapiens
    9606    		 21784869 Assembly2
    protein:D:4~128 34~37,47~48
    protein:E:86~332 34,36~37,40~41,44~47
    3084 3siv:C
    (3.304Å)
    		 32 N/A URS000080E2ED N/A Homo
    sapiens
    9606    		 21784869 Assembly1
    protein:A:1~128 47~48
    protein:B:85~332 44~47
    protein:D:4~128 34~37
    protein:E:86~332 33~34,37,40~42
    rna:F:26~57 26~35,37~41,44,46~57
    3085 3siv:F
    (3.304Å)
    		 32 N/A URS000080E2ED N/A Homo
    sapiens
    9606    		 21784869 Assembly1
    protein:A:1~128 34~37
    protein:B:85~332 33~34,36~37,40~42
    protein:D:4~128 47~48
    protein:E:86~332 44~46
    rna:C:26~57 26~35,37~41,44,46~57
    3086 3siv:I
    (3.304Å)
    		 32 N/A URS000080E2ED N/A Homo
    sapiens
    9606    		 21784869 Assembly2
    protein:G:1~128 47~48
    protein:H:86~332 44~45,47
    protein:J:3~128 34~37
    protein:K:86~332 33,37,40~42
    rna:L:26~57 26~35,37~41,44,46~57
    3087 3siv:L
    (3.304Å)
    		 32 N/A URS000080E2ED N/A Homo
    sapiens
    9606    		 21784869 Assembly2
    protein:G:1~128 34~37
    protein:H:86~332 32~34,37,40~42
    protein:J:3~128 47~48
    protein:K:86~332 44~45,47
    rna:I:26~57 26~35,37~41,44,46~57
    3088 3sj2:A
    (1.36Å)
    		 19 N/A URS000080E259 N/A synthetic
    construct
    32630    		 21766409 Assembly1
    rna:B:3~19 3~19
    3089 3sj2:B
    (1.36Å)
    		 17 N/A URS000080DE63 N/A synthetic
    construct
    32630    		 21766409 Assembly1
    rna:A:1~19 3~19
    ACT:A:21 12~13
    3090 3ski:A
    (2.3Å)
    		 68 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DE91 RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly1
    rna:B:22~89 41~43,70
    GNG:A:120 30~31,56~59,80~82
    MG:A:204 31,53
    MG:A:228 58~59
    SO4:A:213 30,80
    SO4:A:216 39~40
    3091 3ski:B
    (2.3Å)
    		 68 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DE91 RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly1
    rna:A:22~89 41~43,70
    GNG:B:120 30~31,56~59,80~81
    SO4:B:214 24~25
    3092 3skl:A
    (2.9Å)
    		 66 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DEBE RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly1
    GNG:A:120 29~30,56~58,79~80
    IRI:A:402 44~45
    IRI:A:403 62,73~74
    IRI:A:405 32,48,59~60
    IRI:A:409 51~52,54,56
    IRI:A:411 34~35
    3093 3skl:B
    (2.9Å)
    		 66 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DEBE RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly2
    GNG:B:120 29~30,55,57~58,79~80
    MG:B:202 30~31
    MG:B:203 22~23,85
    MG:B:205 32~34
    MG:B:206 68~69
    IRI:B:404 51~52,56
    IRI:B:407 44~45
    IRI:B:408 31,77
    IRI:B:410 32,47~48,59~60
    3094 3skr:A
    (3.1Å)
    		 66 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DEBE RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly1
    GNG:A:120 30~31,59,80
    NCO:A:403 45~46
    NCO:A:405 33,48~49,60~61
    NCO:A:406 33,74~76
    MG:A:201 31~32
    3095 3skr:B
    (3.1Å)
    		 66 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DEBE RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly2
    GNG:B:120 30~31,56,59,80~81
    NCO:B:404 33,49,60~61
    NCO:B:407 23,86~87
    NCO:B:409 74~76
    3096 3skt:A
    (3.1Å)
    		 66 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DEBE RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly1
    GNG:A:89 30~31,56~59,80~81
    MN:A:207 33~34,73
    MN:A:208 75~76
    MN:A:209 33,61
    MN:A:210 41,70~71
    3097 3skt:B
    (3.1Å)
    		 66 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DEBE RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly2
    GNG:B:89 30~31,56~57,59,80~81
    MN:B:204 32,78
    MN:B:205 33,60~61
    MN:B:206 34~35,73
    MG:B:309 33,48,61
    3098 3skw:A
    (2.95Å)
    		 66 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DEBE RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly1
    GNG:A:120 30~31,56~59,80~81
    CS:A:201 46~47,71~72
    CS:A:202 31~32
    CS:A:203 33~35
    CS:A:205 68,72
    MG:A:206 45~46
    MG:A:305 63,76
    3099 3skw:B
    (2.95Å)
    		 66 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DEBE RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly2
    GNG:B:120 30~31,56~59,80~81
    3100 3skz:A
    (2.605Å)
    		 68 GO:0032546 (F) deoxyribonucleoside bin...
    GO:0031554 (P) regulation of terminati...    		 URS000080DE91 RF01510 Mesoplasma
    florum
    2151    		 21841796 Assembly1
    GMP:A:120 30~31,58~59,80~81
    MG:A:228 58~59
    SO4:A:216 39~40
    SIN:A:301 57~58
    << < 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 > >>
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.